LOCUS JH000014 5219470 bp DNA linear CON 14-MAR-2015 DEFINITION Cricetulus griseus cell line CHO-K1 unplaced genomic scaffold scaffold903, whole genome shotgun sequence. ACCESSION JH000014 AFTD01000000 VERSION JH000014.1 DBLINK BioProject: PRJNA69991 BioSample: SAMN02981352 KEYWORDS WGS. SOURCE Cricetulus griseus (Chinese hamster) ORGANISM Cricetulus griseus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus. REFERENCE 1 (bases 1 to 5219470) AUTHORS Xu,X., Nagarajan,H., Lewis,N.E., Pan,S., Cai,Z., Liu,X., Chen,W., Xie,M., Wang,W., Hammond,S., Andersen,M.R., Neff,N., Passarelli,B., Koh,W., Fan,C.H., Wang,J., Gui,Y., Lee,K.H., Betenbaugh,M.J., Quake,S.R., Famili,I., Palsson,B.O. and Wang,J. TITLE The genomic sequence of the Chinese hamster ovary CHO-K1 cell line JOURNAL Unpublished REFERENCE 2 (bases 1 to 5219470) AUTHORS Xu,X., Nagarajan,H., Lewis,N.E., Pan,S., Cai,Z., Liu,X., Chen,W., Xie,M., Wang,W., Hammond,S., Andersen,M.R., Neff,N., Passarelli,B., Koh,W., Fan,C.H., Wang,J., Gui,Y., Lee,K.H., Betenbaugh,M.J., Quake,S.R., Famili,I., Palsson,B.O. and Wang,J. TITLE Direct Submission JOURNAL Submitted (02-AUG-2011) Beijing Genomics Institute in Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen, China COMMENT Source of DNA is available from ATCC Catalog No. CCL-61. ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 1.05 Assembly Name :: CriGri_1.0 Genome Coverage :: 130x Sequencing Technology :: Illumina GA IIx ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..5219470 /organism="Cricetulus griseus" /mol_type="genomic DNA" /submitter_seqid="scaffold903" /db_xref="taxon:10029" /chromosome="Unknown" /cell_line="CHO-K1" assembly_gap 2748..2820 /estimated_length=73 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 19136..19164 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 117786..117795 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 203807..203844 /estimated_length=38 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 260524..260533 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 273346..273355 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 326903..326921 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 329502..329523 /estimated_length=22 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 380430..380439 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 490527..490606 /estimated_length=80 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 505921..505930 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 526469..526650 /estimated_length=182 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 629445..629465 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 723321..723330 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 738296..738517 /locus_tag="I79_000701" mRNA 738296..738517 /locus_tag="I79_000701" /product="hypothetical protein" CDS 738296..738517 /locus_tag="I79_000701" /codon_start=1 /product="hypothetical protein" /protein_id="EGV99664.1" /translation="MRSCLKKKKRKRRRKRRRRGEEEEREEEEEEEEEEEEEEEEEEE EEEEEEEEEVHKKRLREKGEGRELPPRIC" assembly_gap 754842..754882 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 804059..805202 /estimated_length=1144 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 816543..816575 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 826873..826882 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 835472..835540 /estimated_length=69 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 865901..865975 /estimated_length=75 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 967872..968547 /estimated_length=676 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1003565..1003574 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1029757..1029906 /estimated_length=150 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1074595..1074707 /estimated_length=113 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1075879..1076110 /estimated_length=232 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1173466..1173560 /estimated_length=95 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1213810..1213938 /estimated_length=129 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1214657..1214711 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1215249..1215538 /estimated_length=290 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1216632..1216733 /estimated_length=102 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1218034..1218096 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1248214..1249315 /estimated_length=1102 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1293539..1293746 /estimated_length=208 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1354767..1354780 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1354915..1355001 /estimated_length=87 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1447561..1447605 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1452761..1452795 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1459158..1459204 /estimated_length=47 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1478695..1478842 /estimated_length=148 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1480187..1484228 /estimated_length=4042 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 1560892..1561476 /locus_tag="I79_000702" mRNA 1560892..1561476 /locus_tag="I79_000702" /product="Teneurin-3" CDS 1560892..1561476 /locus_tag="I79_000702" /codon_start=1 /product="Teneurin-3" /protein_id="EGV99665.1" /db_xref="UniProtKB/Swiss-Prot:Q9WTS6" /db_xref="UniProtKB/TrEMBL:B7ZNJ5" /translation="MAEVQVSRRKAGGEQSWLWFATVKSLIGKGVMLAVSQGRVQTNV LNIANEDCIKVAAVLNNAFYLENLHFTIEGKDTHYFIKTTTPESDLGTLRLTSGRKAL ENGINVTVSQSTTVVNGRTRRFADVEMQFGALALHVRYGMTLDEEKARILEQARXXXS STPSWPTAPTTSSSCDKARSARGNLRATPAQRLL" assembly_gap 1561359..1561368 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1603020..1603029 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1608570..1608632 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1612784..1613068 /estimated_length=285 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1621446..1621491 /estimated_length=46 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1621679..1622043 /estimated_length=365 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1622153..1622907 /estimated_length=755 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(1641627..1667311) /locus_tag="I79_000703" mRNA complement(join(1641627..1641705,1643128..1643224, 1644505..1644621,1666904..1667039,1667204..1667311)) /locus_tag="I79_000703" /product="Deoxycytidylate deaminase" CDS complement(join(1641627..1641705,1643128..1643224, 1644505..1644621,1666904..1667039,1667204..1667311)) /locus_tag="I79_000703" /note="GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]" /codon_start=1 /product="Deoxycytidylate deaminase" /protein_id="EGV99666.1" /db_xref="InterPro:IPR002125" /db_xref="InterPro:IPR016193" /db_xref="UniProtKB/Swiss-Prot:Q5M9G0" /db_xref="UniProtKB/TrEMBL:A6QQC3" /translation="MSDSSCKKRDDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNT ENKIVGIGYNGMPNGCSDDLLPWRRTAENKLDTKYPYVCHAELNAIMNKNSADVKGCS MYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSEETTAARLMFKLAGVTFRKFTPKYS KIVIDFDSINSRPSQKLQ" assembly_gap 1668264..1668311 /estimated_length=48 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1677295..1677309 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1725228..1725604 /estimated_length=377 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1730249..1730671 /estimated_length=423 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1731138..1731288 /estimated_length=151 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1786812..1787553 /estimated_length=742 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1798870..1798928 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1819733..1819742 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 1865519..1933360 /locus_tag="I79_000704" mRNA join(1865519..1865669,1866948..1867024,1876963..1877042, 1881507..1881636,1883399..1883545,1884687..1884760, 1887787..1888029,1893866..1893955,1895292..1895896, 1900314..1900443,1900971..1901051,1901129..1901215, 1904818..1905010,1907258..1907422,1918025..1918146, 1920342..1920537,1923040..1923204,1924467..1924559, 1925217..1925459,1930754..1930881,1933294..1933360) /locus_tag="I79_000704" /product="Protein WWC2" CDS join(1865519..1865669,1866948..1867024,1876963..1877042, 1881507..1881636,1883399..1883545,1884687..1884760, 1887787..1888029,1893866..1893955,1895292..1895896, 1900314..1900443,1900971..1901051,1901129..1901215, 1904818..1905010,1907258..1907422,1918025..1918146, 1920342..1920537,1923040..1923204,1924467..1924559, 1925217..1925459,1930754..1930881,1933294..1933360) /locus_tag="I79_000704" /codon_start=1 /product="Protein WWC2" /protein_id="EGV99667.1" /db_xref="InterPro:IPR008973" /db_xref="UniProtKB/Swiss-Prot:Q6AWC2" /db_xref="UniProtKB/TrEMBL:Q0KIX1" /translation="MLKDYLSVAQDALRTQKELYHVKEQRLALALDEYVRLNDAYKEK SSSRTSLFSGSSSSTKYDPDILKAEISTTRLRVKRLKRELSQMKQELLYKEQGFETLQ QIDEKMSGGQSGYELSEAKAILTELKSIRKAISSGEKEKQDLMQSLAKLQGRFHLDQN MGSSEPDLRSSPVNSHLSLSRQTLDAGSQTNISGDIGVRSRSNLAEKVRLSLQYEEAK RSMANLKIELSKLDSEAWPGALDIEKEKLMLINEKEELLKELQFITPQKRTQDELERL EAERQRLEEELMSSRGLPSRALAERLKLEEKRKELLQKLEETTKLTTYLYSQLKSTLS MSSGSSLGSLTSSRGSLNTSSRGSLNSLSSSELYYTSQGDSMDADYQCKLDFLLQEKG GYIPSGPITTIHENEVVKSPSQPGQSGLCGVAAAAPSHTPPLTEASKSVTSLSSRSSL SSLSPPGSPLVLDSTFPVSPHDTSLHQFTVDFEDCGLSSHFADIGLGENQVLLDSDSG ASQSLLEDKDLDECTGQLLYEGTTDVEKSLPKRGGIHLRGDKIACVSAAASDESVAGD SGVYEASMKQPGEMEDATYSEEDVTVVETAQVQIGLRYDTKSSSFMVIIAQLRNLHAF LIPHSSKVYFRVAVLPSSADVSCLFRTKVHPPTESVLYNDVSRMAISQAALQQKTLRV DLCCVSKHHREECLAGTQISLADLPFSNEIFMLWYNLLPSKQTPCKKNEEENEEPVLQ SNEPELDSIDLDAVSALLARTSAELLAVEQELAQEEEEELKPEEQRGPGGDCLTMLRE ASNETVAAKEAEVHLVEGSRCPGDPSSCTGGPEMREDQRRKERHYAEDPCQPPTGIPT LVDKETNTDEAVDGNMAVRPKDRSSLSSRQHPFVRNSVIVRSQTFSPGERSQYICRLN RSDSDSSTLAKKSLFVRNSTERRSLRVKRAVCQPTLRRTAQECPVRTSLDLELDLQAS LTRQSRLNDELQALRDLRQKLEELKAQGETDLPPGVLEDERFQKLLKQAEKQAEQTKE EQKQDLNAEKLMRQVSKDVCRLREQSRKVPRQVQSFREKIAYFTRAKISIPSLPADDV " assembly_gap 1871260..1871459 /estimated_length=200 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1874700..1874709 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1906211..1906220 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1914600..1914697 /estimated_length=98 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1926388..1926726 /estimated_length=339 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(1937058..1937720) /locus_tag="I79_000705" mRNA complement(1937058..1937720) /locus_tag="I79_000705" /product="Claudin-22" CDS complement(1937058..1937720) /locus_tag="I79_000705" /note="GO_component: GO:0016020 - membrane [Evidence IEA]" /codon_start=1 /product="Claudin-22" /protein_id="EGV99668.1" /db_xref="InterPro:IPR004031" /db_xref="UniProtKB/Swiss-Prot:Q9D7U6" /db_xref="UniProtKB/TrEMBL:C3VMW7" /translation="MGLDFRTATQSAALLLSLLGWVLACLTNYLPHWKNLNLELNEME NWTMGLWKSCVIQEEVGRQCKDFDSFLALPAELQISRILMSLSNGLGLLGLLASGSGL DCLRLGETQKDLKRRLLILGGLLLWTSGVMVLVPVSWVAHMTVEEFWDETLPEIVPRW EFGEALFLGWFAGFCLVLGGCLLHCAACSSPAPPASGRYAVTGLQDHCQQLELKHANP EI" assembly_gap 1954044..1954143 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1968928..1971460 /estimated_length=2533 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2043155..2043732 /estimated_length=578 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 2045880..2046872 /locus_tag="I79_000706" mRNA 2045880..2046872 /locus_tag="I79_000706" /product="CDKN2A-interacting protein" CDS 2045880..2046872 /locus_tag="I79_000706" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0003725 - double-stranded RNA binding [Evidence IEA]" /codon_start=1 /product="CDKN2A-interacting protein" /protein_id="EGV99669.1" /db_xref="InterPro:IPR001159" /db_xref="UniProtKB/Swiss-Prot:Q8BI72" /db_xref="UniProtKB/TrEMBL:B3KTW3" /translation="MNSHVTQSTDSRQQSGSPKKSALEGSSVSASQSSSEIEVPLLGS SGSSEVELPLLSSKSSPETASSGLTSKTSSEASVSSSVPKNTSSTSGTSLLTPKGSST NASLLTSKSTSQVAASLLASKSSSQSSGSVASKSTSLAGMSQLASKSSSQSSTSQLPS KSTSQSSESSVKFSCRKLTNEDVKQKQPFFNRLYKTVAWKLVAVGGFSPTVNHGELLN AAIEALKATLDVFFVPLKELADLPQNKSSQESIVCELRCKSVYLGTGCGKSKENAKAV ASREALKLFLKKKVVVKICKRKYRGSEVEDLVLLDEESRPLNLPPALKHPQELL" gene complement(2074328..2074654) /locus_tag="I79_000707" mRNA complement(2074328..2074654) /locus_tag="I79_000707" /product="hypothetical protein" CDS complement(2074328..2074654) /locus_tag="I79_000707" /codon_start=1 /product="hypothetical protein" /protein_id="EGV99670.1" /translation="MNFGDPNAYPDACTSSLPTESSYQVISKGQFYKNRFCKTTIENQ LLKYFQLCVYVVFMPVMCMCRYNAFRVQKRASDSLELQLCEFVSRPMWMLGAELCLLQ DDNMLN" gene 2082525..2082683 /locus_tag="I79_000708" mRNA 2082525..2082683 /locus_tag="I79_000708" /product="hypothetical protein" CDS 2082525..2082683 /locus_tag="I79_000708" /codon_start=1 /product="hypothetical protein" /protein_id="EGV99671.1" /translation="MLSKSFVASQLFVVVVVLGNSASPTVLSFHTSCRSVVSRLHKIR KSTTPNSN" assembly_gap 2083651..2085033 /estimated_length=1383 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2085505..2085613 /estimated_length=109 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2102076..2102184 /estimated_length=109 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2123721..2123958 /estimated_length=238 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2203454..2203633 /estimated_length=180 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 2207506..2207661 /locus_tag="I79_000709" mRNA 2207506..2207661 /locus_tag="I79_000709" /product="hypothetical protein" CDS 2207506..2207661 /locus_tag="I79_000709" /codon_start=1 /product="hypothetical protein" /protein_id="EGV99672.1" /translation="MGASQLFQMQAYSFTVLHFTAHTTSLKPRVTLGTPWIHLNLLLC YSNSLKR" gene 2208393..2208716 /locus_tag="I79_000710" mRNA 2208393..2208716 /locus_tag="I79_000710" /product="hypothetical protein" CDS 2208393..2208716 /locus_tag="I79_000710" /codon_start=1 /product="hypothetical protein" /protein_id="EGV99673.1" /translation="MNQELNDSAKPVGQQAWGILLSASPALGFRCMLGFVCVCWGSKF PSSCLHSKHLIDGALSQPLNFLLRFFLLFIESKELMIKCFYPNQEKSITRYQFNRGKQ FTADK" gene complement(2212672..2223460) /locus_tag="I79_000711" mRNA complement(join(2212672..2212727,2215896..2216013, 2216942..2217092,2217173..2217282,2223380..2223460)) /locus_tag="I79_000711" /product="RWD domain-containing protein 4" CDS complement(join(2212672..2212727,2215896..2216013, 2216942..2217092,2217173..2217282,2223380..2223460)) /locus_tag="I79_000711" /codon_start=1 /product="RWD domain-containing protein 4" /protein_id="EGV99674.1" /db_xref="InterPro:IPR006575" /db_xref="InterPro:IPR016135" /db_xref="UniProtKB/Swiss-Prot:Q569B7" /db_xref="UniProtKB/TrEMBL:C9J9G5" /translation="MELEALRSIYEGDESFRELSPVSFQYRIGEDGDPKAFLIEISWT ETYPQTPPVISMNAFFNNTISSAVKQSILAKLQEAVEVNLGTAMTYTLFEYAKDNKEQ FMENHHPGNSTPTPVANIISVETPSTAPSSKKKDKKEQLSKAQKRKLADKTDHKGELP RGWNWVDVVKV" gene 2226554..2256200 /locus_tag="I79_000712" mRNA join(2226554..2226570,2230328..2230553,2231567..2231736, 2233039..2233109,2234174..2234288,2236150..2236249, 2236603..2236676,2238343..2238439,2241129..2241262, 2242223..2242370,2244071..2244164,2244803..2244882, 2244984..2245062,2245140..2245194,2245484..2245629, 2246303..2246364,2246478..2246610,2248025..2248155, 2248538..2248693,2250704..2250891,2250995..2251143, 2252727..2252848,2253295..2253414,2254954..2255019, 2255127..2255283,2256013..2256200) /locus_tag="I79_000712" /product="UPF0636 protein C4orf41-like" CDS join(2226554..2226570,2230328..2230553,2231567..2231736, 2233039..2233109,2234174..2234288,2236150..2236249, 2236603..2236676,2238343..2238439,2241129..2241262, 2242223..2242370,2244071..2244164,2244803..2244882, 2244984..2245062,2245140..2245194,2245484..2245629, 2246303..2246364,2246478..2246610,2248025..2248155, 2248538..2248693,2250704..2250891,2250995..2251143, 2252727..2252848,2253295..2253414,2254954..2255019, 2255127..2255283,2256013..2256200) /locus_tag="I79_000712" /codon_start=1 /product="UPF0636 protein C4orf41-like" /protein_id="EGV99675.1" /db_xref="UniProtKB/Swiss-Prot:B2RXC1" /db_xref="UniProtKB/TrEMBL:B7WNP8" /translation="MRGTGGFLCDILNMSPTQWDFPVELCCRPMAFVTLTGLDVVYNA VHRAVWDAFCANRRADRVPISFKVLPGDHEYPKCRSKRTSYEWYIPKGILKTGWMNKH LNLVPALVVVFYELDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLP PGEDIIASERAAALCNVCELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIR RVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETN ILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKVGSAELSFEHAAWMSK QFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQERKQHARALCNHDASVMYPSP DPLETQTGVLDFYGQRPWRQGVLSFDLSDPEKEKAGVLAIQLLERSVVHSEIIISLLS NAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVMCDYRSEGWWTLLTSI LTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLMNVLMNESPDPEPDC DVLAVKTAQKLWADRVSLAGSNVFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQFDVYL KADCPHPIRFSKLCVSFNNQAYNQFCVLEEASKASEVLENLTQGKMCLVPGKTRKLLF KFVAKTEDVGKKIEITSVDLVLGSESGRCVVLSWQGGGGDAASSQEALQAARSFKRRP KLPNNEVHWDSIIIQASTMIISRVPNISVHLRHEPPALMNEMYCLVVTVQSHEKSQIR DVKLTAGLKPGQDANLTQKTHVTLHGAELCDESYPALLTDIPVGDLHPGEQLEKTVYV RCGTVGSRMFLVYVSYLINTTVEGKEIVCKCHKDETVTIETVFPFDVAVRFVSTKFEH LERVYADIPFLLMTDVLSASPWALTIVSSELQLAPSMTTMDHLESQVDKGPGMGFPLS LNLQLPLNLRVPLFPSPASDQKQYTVKGRNCRGQPCSFTHTQPDTKFSFLYFS" assembly_gap 2226863..2226994 /estimated_length=132 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 2261557..2266967 /locus_tag="I79_000713" mRNA join(2261557..2261638,2263686..2263819,2265544..2265711, 2266923..2266967) /locus_tag="I79_000713" /product="UPF0636 protein C4orf41" CDS join(2261557..2261638,2263686..2263819,2265544..2265711, 2266923..2266967) /locus_tag="I79_000713" /codon_start=1 /product="UPF0636 protein C4orf41" /protein_id="EGV99676.1" /db_xref="InterPro:IPR012880" /db_xref="UniProtKB/Swiss-Prot:Q7Z392" /db_xref="UniProtKB/TrEMBL:B3KU05" /translation="MENIPVISTVITLPHVIVENIPLHVNADLPSFGRVRESLPVRYH LQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTKQEMLYNFYPLMAGYQQLPSL NINLLRFPSFTNQLLRRFLPTSIFVKPQGRLLDDASIAAA" gene 2267889..2268131 /locus_tag="I79_000714" mRNA 2267889..2268131 /locus_tag="I79_000714" /product="hypothetical protein" CDS 2267889..2268131 /locus_tag="I79_000714" /codon_start=1 /product="hypothetical protein" /protein_id="EGV99677.1" /translation="MSFSWFDFSCVKQPLPRTRHEGPGKRSQKCSLCSRPCPANPCSD RGKLYGGHESRMSRIFQIEAISVLLSGLGSSLTCVA" assembly_gap 2291058..2291440 /estimated_length=383 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2292493..2292526 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(2323919..2324404) /locus_tag="I79_000715" mRNA complement(2323919..2324404) /locus_tag="I79_000715" /product="Glyceraldehyde-3-phosphate dehydrogenase" CDS complement(2323919..2324404) /locus_tag="I79_000715" /codon_start=1 /product="Glyceraldehyde-3-phosphate dehydrogenase" /protein_id="EGV99678.1" /db_xref="InterPro:IPR020829" /db_xref="UniProtKB/Swiss-Prot:P17244" /db_xref="UniProtKB/TrEMBL:Q58A57" /translation="MTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVG KVIPELNGKLTGLAFRVPTPNVSVVDLTCRLEKPAKYEDIKKVVKQASEGPLKGILGY TEDQVVSCDFNCDSHSSTFDAGAGIALNGNFVKLISWYDNEFGYSNRVVDLIAYMASK E" assembly_gap 2324435..2324711 /estimated_length=277 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2326293..2327435 /estimated_length=1143 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2328888..2328903 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2352181..2352202 /estimated_length=22 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2415660..2415706 /estimated_length=47 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2437260..2439057 /estimated_length=1798 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 2439066..2589194 /locus_tag="I79_000716" mRNA join(2439066..2439235,2589119..2589194) /locus_tag="I79_000716" /product="Storkhead-box protein 2" CDS join(2439066..2439235,2589119..2589194) /locus_tag="I79_000716" /codon_start=1 /product="Storkhead-box protein 2" /protein_id="EGV99679.1" /db_xref="UniProtKB/Swiss-Prot:Q9P2F5" /db_xref="UniProtKB/TrEMBL:Q5R479" /translation="MKKTRSTTLRRAWPSSDFSDRASDRMRSRSEKDYRLHKRFPAAF APQASRGYMTSGWLMLCVSKTNHEDLVGLFSVQQSTV" assembly_gap 2472831..2474028 /estimated_length=1198 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2483807..2484947 /estimated_length=1141 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2527823..2530391 /estimated_length=2569 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2568226..2568318 /estimated_length=93 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2595597..2595644 /estimated_length=48 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2596642..2596785 /estimated_length=144 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(2613278..2720641) /locus_tag="I79_000717" mRNA complement(join(2613278..2613483,2618359..2618482, 2631237..2631374,2634371..2634514,2634937..2635078, 2643898..2644009,2672836..2673015,2720401..2720641)) /locus_tag="I79_000717" /product="Ectonucleotide pyrophosphatase/phosphodiesterase family member 6" CDS complement(join(2613278..2613483,2618359..2618482, 2631237..2631374,2634371..2634514,2634937..2635078, 2643898..2644009,2672836..2673015,2720401..2720641)) /locus_tag="I79_000717" /note="GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]" /codon_start=1 /product="Ectonucleotide pyrophosphatase/phosphodiesterase family member 6" /protein_id="EGV99680.1" /db_xref="InterPro:IPR002591" /db_xref="InterPro:IPR017850" /db_xref="UniProtKB/Swiss-Prot:Q8BGN3" /db_xref="UniProtKB/TrEMBL:C3ZMZ5" /translation="MAVKLGTFLLVFGLSLVWPASAHRKLLVFLLDGFRSDYISEEVL ASLPGFREIVNRGVKVDYLTPDFPSLSYPNYYTLMTGRHCEVHQMIGNYMWDSTINKS FDIGVNRDSLMPLWWNGSEPLWITLMKARRKVYMYYWPGCEVEILGVRPTYCLEYKTV PTDINFANAVSDALDSLKSGRADLAAIYHERIDVEGHHYGPSSPQRKDALKAVDTVLK YMIQWIQERGLQDDLNVIIFSDHGMTDIFWMDKVIELSKYISLDDLQQVKDRGPVIYH KLSTVEHMTVYEKEAIPSRFHYKKGKFVSPLTLVADEGWFITENREMLPFWMNSTGKR EGWQRGWHGYDNELMDMRGIFLAFGPDFKSNFRAAPIRSVDVYNIMCNVAGITPLPNN GSWSRVECMLKGQTSSAPSVPLNCYALALILLLYFA" assembly_gap 2620649..2620702 /estimated_length=54 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2629794..2630096 /estimated_length=303 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2678123..2678778 /estimated_length=656 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2685231..2685608 /estimated_length=378 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2689320..2689336 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2709570..2711233 /estimated_length=1664 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2711404..2717326 /estimated_length=5923 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2717378..2717491 /estimated_length=114 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2772494..2772780 /estimated_length=287 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(2778988..2779813) /locus_tag="I79_000718" mRNA complement(join(2778988..2779389,2779715..2779813)) /locus_tag="I79_000718" /product="WD repeat-containing protein 92" CDS complement(join(2778988..2779389,2779715..2779813)) /locus_tag="I79_000718" /codon_start=1 /product="WD repeat-containing protein 92" /protein_id="EGV99681.1" /db_xref="InterPro:IPR011046" /db_xref="UniProtKB/Swiss-Prot:Q8BGF3" /db_xref="UniProtKB/TrEMBL:Q86YQ0" /translation="MSMFEKPQIIVHIQKGLNDTVFDCKWVPCSAKFVWDPRQKDDPV ANMEPAQGENKRDCWTVAFGNAYNREERVVCAGYDNGDIKLFDLRNMLLRWETNIKNV VCSLEFDRKDISMNKLVSTSLEGKFHVFDMECSILPKALLPLRKRPINPPYGKFDTCL GTESSF" assembly_gap 2803857..2804010 /estimated_length=154 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2804141..2804198 /estimated_length=58 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2804397..2804478 /estimated_length=82 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2804751..2804908 /estimated_length=158 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2805077..2805213 /estimated_length=137 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2806683..2806879 /estimated_length=197 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2813367..2815724 /estimated_length=2358 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2817969..2817994 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2821982..2822033 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 2859706..2859921 /locus_tag="I79_000719" mRNA 2859706..2859921 /locus_tag="I79_000719" /product="hypothetical protein" CDS 2859706..2859921 /locus_tag="I79_000719" /codon_start=1 /product="hypothetical protein" /protein_id="EGV99682.1" /translation="MLALTVGNAAPPLPLWLLVHELEGVALGDPAGSRDMHLPRGWSP ELKRSSSPGVGHSNQYSIVKAFSLRFV" gene complement(2860009..2910865) /locus_tag="I79_000720" mRNA complement(join(2860009..2860317,2861345..2861391, 2868545..2868709,2885690..2885807,2896133..2896179, 2896486..2896662,2897332..2897431,2910779..2910865)) /locus_tag="I79_000720" /product="Interferon regulatory factor 2" CDS complement(join(2860009..2860317,2861345..2861391, 2868545..2868709,2885690..2885807,2896133..2896179, 2896486..2896662,2897332..2897431,2910779..2910865)) /locus_tag="I79_000720" /note="GO_function: GO:0003700 - transcription factor activity [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]" /codon_start=1 /product="Interferon regulatory factor 2" /protein_id="EGV99683.1" /db_xref="InterPro:IPR001346" /db_xref="UniProtKB/Swiss-Prot:Q8R4E0" /db_xref="UniProtKB/TrEMBL:Q923E9" /translation="MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARH GWDVEKDAPLFRNWAIHTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDRSIKKG NNAFRVYRMLPLSERPSKKGKKPKTEKEDRVKHIKQEPVESSLGLSNGVSDLSPEYAV LTSAIKNEVDSTVNIIVVGQSHLDSSIEDQEIVTNPPDICQVVEVTTESDDQPVSMSE LYPLQISPVSSYAESETTDSVPSDEESAEGRPHWRKRNIEGKQYLSNMGTRSTYLLPS MATFVTSNKPDLQVTIKEESCPMPYNSSWPPFTDLSLPAPVTPTPSSSRPDRETRASV IKKTSDITQARVKSC" assembly_gap 2956085..2956200 /estimated_length=116 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2958077..2958804 /estimated_length=728 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2961032..2962776 /estimated_length=1745 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3029091..3029489 /estimated_length=399 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3029960..3030023 /estimated_length=64 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3030125..3030564 /estimated_length=440 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3030798..3031142 /estimated_length=345 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3031787..3031915 /estimated_length=129 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3032449..3032789 /estimated_length=341 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3065622..3066039 /estimated_length=418 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3088341..3089352 /estimated_length=1012 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 3094908..3106323 /locus_tag="I79_000721" mRNA join(3094908..3094938,3095630..3095792,3098366..3098454, 3099994..3100083,3100161..3100269,3103531..3103613, 3103692..3103738,3106069..3106323) /locus_tag="I79_000721" /product="Coiled-coil domain-containing protein 111" CDS join(3094908..3094938,3095630..3095792,3098366..3098454, 3099994..3100083,3100161..3100269,3103531..3103613, 3103692..3103738,3106069..3106323) /locus_tag="I79_000721" /note="GO_function: GO:0003896 - DNA primase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]" /codon_start=1 /product="Coiled-coil domain-containing protein 111" /protein_id="EGV99684.1" /db_xref="InterPro:IPR004340" /db_xref="UniProtKB/Swiss-Prot:Q6P1E7" /db_xref="UniProtKB/TrEMBL:Q5RFF3" /translation="MGEKCLFVDLGVYTRNRNFRLYRSSKIGKCVALEVAEDNRFIPK QSKDISEENQYFLSSLVSNVRFSDTLRILTCDTSQTKRKRAEYFNSTGTSVESLEGFH CSPYPEVDQFVLSLVNKHDIKGGIRRWNYFFPEELLVYDICKYRWCENIGRAHKSNNI MILVDLKNEVWYQKCHDPVCKAQNFKSNCFPLPTEVSLLFLLKEEEFTPDEVGETSNS LTKNSQNPPSSNLLPDSFSDAGWDDQDDACFLEATEDAEFADAADRSLLGYKSAMDDI PDELIIEALQSS" gene complement(3106898..3132188) /locus_tag="I79_000722" mRNA complement(join(3106898..3107011,3108857..3109013, 3111328..3111389,3111865..3111912,3112726..3112804, 3118334..3118442,3119727..3119796,3122261..3122491, 3123420..3123480,3124810..3124912,3128127..3128238, 3130465..3130513,3132148..3132188)) /locus_tag="I79_000722" /product="Centromere protein U" CDS complement(join(3106898..3107011,3108857..3109013, 3111328..3111389,3111865..3111912,3112726..3112804, 3118334..3118442,3119727..3119796,3122261..3122491, 3123420..3123480,3124810..3124912,3128127..3128238, 3130465..3130513,3132148..3132188)) /locus_tag="I79_000722" /codon_start=1 /product="Centromere protein U" /protein_id="EGV99685.1" /db_xref="UniProtKB/Swiss-Prot:Q8C4M7" /db_xref="UniProtKB/TrEMBL:Q149H7" /translation="MAARRRLRYPGFPGAKHSKNTLGRTHSRKHKAGQKHNPKDVFDF ADNSDVSSMLGEMEEEEEPYESFDPPLHSTAIDAEEELSKHCGSSASPATHGRQEGRS LSPSESESSENKSIKISAKKPRRRLESISDEFESSEDNVRRKVGSTERASARQHQTAP AASPAPHVKPVKCVTPERTRCHSTQPSVVEETGAVKRQLKTQKKVRLSPGRKKKSGSE ATDSDASERMHIWCLEGKRRSSIMELDVILSVFEKTFLEYKQRIESEPCSQAVNKFYF KIKGQLIRMLKEVQVLKALKRKNTKIISNMEKKRQRLIEVQDELLQLEPQLKQLQTKY DHLTERKSSLKNSTNFLSNLKQLYQDYSEVQEKEPKEKEKYDSSSLPALLFEARTVLG AKKHLKTINYQLGKLLEQE" assembly_gap 3139843..3139860 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3145613..3145655 /estimated_length=43 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3167520..3167572 /estimated_length=53 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3168791..3170320 /estimated_length=1530 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3170577..3173206 /estimated_length=2630 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3173505..3173635 /estimated_length=131 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3173808..3174040 /estimated_length=233 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3174248..3174314 /estimated_length=67 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3174658..3174772 /estimated_length=115 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3214313..3214335 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3378173..3378579 /estimated_length=407 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3406346..3406390 /estimated_length=45 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3413752..3413871 /estimated_length=120 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3479737..3479747 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3488900..3489103 /estimated_length=204 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3489514..3489728 /estimated_length=215 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3555684..3555693 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3561968..3564135 /estimated_length=2168 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3564402..3564944 /estimated_length=543 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3582935..3582944 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3588526..3588538 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3615820..3615977 /estimated_length=158 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3623366..3623668 /estimated_length=303 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3636097..3636110 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 3636468..3637580 /locus_tag="I79_000723" mRNA 3636468..3637580 /locus_tag="I79_000723" /product="Polyadenylate-binding protein 4-like" CDS 3636468..3637580 /locus_tag="I79_000723" /note="GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]" /codon_start=1 /product="Polyadenylate-binding protein 4-like" /protein_id="EGV99686.1" /db_xref="InterPro:IPR000504" /db_xref="UniProtKB/Swiss-Prot:P0CB38" /db_xref="UniProtKB/TrEMBL:B1ANR0" /translation="MSLEAKYRAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRD LVSRRSLGYAYVNFLQLDDAQKALDTMNFDLIQGKSIRLMWSQRDAYLRKSGIGNVFI KNLDKSIDNKTLYEHFSPFGKILSSKVMSDEEGSRGYGFVHYQDQSAADRAIEEMNGK LLRDCTVFVDRFKSRKDREAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLS VKVMKDDNGKSKGFGFVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELK EKFEQMKKERIRARQAAKLYIKNLDETIDDETLRREFSSFGSICRVKVMQEAGQSKGF GLICFFSPEAAAKAMAEMNGRILGSKALNIALGQKH" assembly_gap 3697429..3697491 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3703139..3703206 /estimated_length=68 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3773550..3773559 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3852343..3852440 /estimated_length=98 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3854062..3854184 /estimated_length=123 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3877665..3883149 /estimated_length=5485 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3885516..3886452 /estimated_length=937 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3888486..3888795 /estimated_length=310 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3910089..3910264 /estimated_length=176 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3971181..3971405 /estimated_length=225 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3971467..3971476 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4010353..4013175 /estimated_length=2823 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4023718..4023937 /estimated_length=220 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4035244..4035305 /estimated_length=62 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4035516..4036085 /estimated_length=570 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4037280..4037417 /estimated_length=138 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4043623..4043636 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4048518..4049890 /estimated_length=1373 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4053858..4053868 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4065588..4066267 /estimated_length=680 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4128006..4128033 /estimated_length=28 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4130307..4130316 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4135263..4135304 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 4137904..4138066 /locus_tag="I79_000724" ncRNA 4137904..4138066 /ncRNA_class="snRNA" /locus_tag="I79_000724" /product="U1 spliceosomal RNA" assembly_gap 4182068..4182101 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4187872..4188259 /estimated_length=388 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4191285..4191323 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4234111..4234592 /estimated_length=482 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4241220..4241371 /estimated_length=152 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4282191..4282286 /estimated_length=96 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4308380..4308524 /estimated_length=145 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4326163..4326202 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4326471..4326576 /estimated_length=106 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4361768..4361869 /estimated_length=102 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4363201..4363210 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4363504..4363609 /estimated_length=106 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4368119..4368128 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4368484..4368542 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4467226..4467365 /estimated_length=140 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4513297..4513923 /estimated_length=627 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4529096..4529241 /estimated_length=146 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4530428..4530503 /estimated_length=76 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(4549577..4558538) /locus_tag="I79_000725" mRNA complement(join(4549577..4549932,4557921..4558027, 4558513..4558538)) /locus_tag="I79_000725" /product="Protocadherin-10" CDS complement(join(4549577..4549932,4557921..4558027, 4558513..4558538)) /locus_tag="I79_000725" /codon_start=1 /product="Protocadherin-10" /protein_id="EGV99687.1" /db_xref="UniProtKB/Swiss-Prot:Q9P2E7" /db_xref="UniProtKB/TrEMBL:Q925I8" /translation="MNSLQSLACSAFQEADIVSSKDSGHGDSEQGDSDHDVTNRGQSA GMDLFSNCTEECKALGHSDRCWMPSFVPSDGRQAADYRSNLHVPGMDSVPDTEVFEPP EAQPGSERSFSTFGKEKALHGTLERKELDGLLSNTRAPYKPPYLSKYHMKACIKVVPR KK" gene complement(4560046..4562610) /locus_tag="I79_000726" mRNA complement(4560046..4562610) /locus_tag="I79_000726" /product="Protocadherin-10" CDS complement(4560046..4562610) /locus_tag="I79_000726" /note="GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_process: GO:0007156 - homophilic cell adhesion [Evidence IEA]" /codon_start=1 /product="Protocadherin-10" /protein_id="EGV99688.1" /db_xref="InterPro:IPR002126" /db_xref="InterPro:IPR013164" /db_xref="InterPro:IPR015919" /db_xref="UniProtKB/Swiss-Prot:Q9P2E7" /db_xref="UniProtKB/TrEMBL:Q6P0A6" /translation="MIVLLFFALLWMVDGVFSQLHYTVQEEQEHGTFVGNIAEDLGLD ITKLSARRFQTVANSRTPYLDLNLETGVLYVNEKIDREQICKQSPSCVLHLEVFLENP LELFRVEIEVLDINDNPPSFPEPDLTVEISESATPGTRFPLESAFDPDVGTNSLRDYE ITPNSYFSLDVQTQGDGNRFTELVLEKPLDREQQAVHRYVLTAVDGGGGQPVYTVSLP ENSPPGTLVIQLNATDPDEGQNGEVVYSFSSHISPRARELFGLSPRTGRLEVSGELDY EESPVYQVYVQAKDLGPNAVPAHCKVLVRVLDANDNAPEISFSTVKEAVSEGAAPGTV VALFSVTDRDSEENGQVQCELLGDVPFRLKSSFKNYYTIVTEAPLDREAGDSYTLTVV ARDRGEPALSTSKSIQVQVSDVNDNAPRFSQPVYDVYVTENNVPGAYIYAVSATDRDE GANAKLTYSILECQIQGMSVFTYVSINSDNGYLYALRSFDYEQIKDFSFQVEARDAGS PQALAGNATVNILIVDQNDNAPAIVAPLPGRNGTPAREVLPRSAEPGYLLTRVAAVDA DDGENARLTYSIVRGNEMNLFRLDWRTGELRTARRVPAKRDPQRPYELVIEVRDHGEP PLSSTATLVVQLVDGAVEPQGGGGGGGGGPGEHQRPSRSGGGETSLDLTLILIIALGS VSFIFLLAMIVLAVRCQKEKKLNIYTCLASDCCLCCCCCGSGGSTCCGRQARARKKKL SKSDIMLVQSANVPSNPAQVPVEETGSFGSHHHNQNYCYQVCLTPESAKTDLMFLKPC SPSRSTDAEHNPCGAIVTGYSDQQPDIISNGSILSNEVRLKRKNHHLSSPPSESLL" assembly_gap 4637576..4638136 /estimated_length=561 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4638407..4638865 /estimated_length=459 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4638993..4639833 /estimated_length=841 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4641258..4641438 /estimated_length=181 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4657888..4657972 /estimated_length=85 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4658146..4663438 /estimated_length=5293 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4683426..4683460 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4684797..4685009 /estimated_length=213 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4687596..4687605 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4795564..4795593 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 4803183..4804182 /locus_tag="I79_000727" mRNA join(4803183..4803680,4804000..4804182) /locus_tag="I79_000727" /product="Ornithine decarboxylase" CDS join(4803183..4803680,4804000..4804182) /locus_tag="I79_000727" /note="GO_function: GO:0003824 - catalytic activity [Evidence IEA]" /codon_start=1 /product="Ornithine decarboxylase" /protein_id="EGV99689.1" /db_xref="InterPro:IPR000183" /db_xref="UniProtKB/Swiss-Prot:P09057" /db_xref="UniProtKB/TrEMBL:Q53TU3" /translation="MMTFDIEVELMKVTRVHPKANLVLQIATDDSKAVCDLSLKFSTI FRTSRLLLERAIELNIDVIGNSFHMGSGCTDPETFIQALSDACCVFDMWTEVGFSMYL LDIGGGFPECEDMKQVKFEELTSIIHPALDKYIPTDSRVRVTAKPGRYYVASAFTLTV NITAKKRPSIYYVMSRPMWQLMKQIQNHGFPLEVEEQDAGTLPMSCAQESRICCHPAV FVSASINV" assembly_gap 4864662..4864719 /estimated_length=58 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4915938..4916032 /estimated_length=95 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4944106..4944201 /estimated_length=96 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4980898..4980924 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4989700..4989945 /estimated_length=246 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5066934..5067244 /estimated_length=311 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5070416..5072305 /estimated_length=1890 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5072569..5073629 /estimated_length=1061 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5095243..5095304 /estimated_length=62 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5100895..5101083 /estimated_length=189 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5111270..5111279 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5114777..5117195 /estimated_length=2419 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5117463..5118704 /estimated_length=1242 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5119127..5119230 /estimated_length=104 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5119503..5120298 /estimated_length=796 /gap_type="within scaffold" /linkage_evidence="unspecified" CONTIG join(AFTD01054378.1:1..2747,gap(73),AFTD01054379.1:1..16315, gap(29),AFTD01054380.1:1..98621,gap(10),AFTD01054381.1:1..86011, gap(38),AFTD01054382.1:1..56679,gap(10),AFTD01054383.1:1..12812, gap(10),AFTD01054384.1:1..53547,gap(19),AFTD01054385.1:1..2580, gap(22),AFTD01054386.1:1..50906,gap(10),AFTD01054387.1:1..110087, gap(80),AFTD01054388.1:1..15314,gap(10),AFTD01054389.1:1..20538, gap(182),AFTD01054390.1:1..102794,gap(21),AFTD01054391.1:1..93855, gap(10),AFTD01054392.1:1..31511,gap(41),AFTD01054393.1:1..49176, gap(1144),AFTD01054394.1:1..11340,gap(33),AFTD01054395.1:1..10297, gap(10),AFTD01054396.1:1..8589,gap(69),AFTD01054397.1:1..30360, gap(75),AFTD01054398.1:1..101896,gap(676),AFTD01054399.1:1..35017, gap(10),AFTD01054400.1:1..26182,gap(150),AFTD01054401.1:1..44688, gap(113),AFTD01054402.1:1..1171,gap(232),AFTD01054403.1:1..97355, gap(95),AFTD01054404.1:1..40249,gap(129),AFTD01054405.1:1..718, gap(55),AFTD01054406.1:1..537,gap(290),AFTD01054407.1:1..1093, gap(102),AFTD01054408.1:1..1300,gap(63),AFTD01054409.1:1..30117, gap(1102),AFTD01054410.1:1..44223,gap(208),AFTD01054411.1:1..61020, gap(14),AFTD01054412.1:1..134,gap(87),AFTD01054413.1:1..92559, gap(45),AFTD01054414.1:1..5155,gap(35),AFTD01054415.1:1..6362, gap(47),AFTD01054416.1:1..19490,gap(148),AFTD01054417.1:1..1344, gap(4042),AFTD01054418.1:1..77130,gap(10),AFTD01054419.1:1..41651, gap(10),AFTD01054420.1:1..5540,gap(63),AFTD01054421.1:1..4151, gap(285),AFTD01054422.1:1..8377,gap(46),AFTD01054423.1:1..187, gap(365),AFTD01054424.1:1..109,gap(755),AFTD01054425.1:1..45356, gap(48),AFTD01054426.1:1..8983,gap(15),AFTD01054427.1:1..47918, gap(377),AFTD01054428.1:1..4644,gap(423),AFTD01054429.1:1..466, gap(151),AFTD01054430.1:1..55523,gap(742),AFTD01054431.1:1..11316, gap(59),AFTD01054432.1:1..20804,gap(10),AFTD01054433.1:1..51517, gap(200),AFTD01054434.1:1..3240,gap(10),AFTD01054435.1:1..31501, gap(10),AFTD01054436.1:1..8379,gap(98),AFTD01054437.1:1..11690, gap(339),AFTD01054438.1:1..27317,gap(100),AFTD01054439.1:1..14784, gap(2533),AFTD01054440.1:1..71694,gap(578),AFTD01054441.1:1..39918, gap(1383),AFTD01054442.1:1..471,gap(109),AFTD01054443.1:1..16462, gap(109),AFTD01054444.1:1..21536,gap(238),AFTD01054445.1:1..79495, gap(180),AFTD01054446.1:1..23229,gap(132),AFTD01054447.1:1..64063, gap(383),AFTD01054448.1:1..1052,gap(34),AFTD01054449.1:1..31908, gap(277),AFTD01054450.1:1..1581,gap(1143),AFTD01054451.1:1..1452, gap(16),AFTD01054452.1:1..23277,gap(22),AFTD01054453.1:1..63457, gap(47),AFTD01054454.1:1..21553,gap(1798),AFTD01054455.1:1..33773, gap(1198),AFTD01054456.1:1..9778,gap(1141),AFTD01054457.1:1..42875, gap(2569),AFTD01054458.1:1..37834,gap(93),AFTD01054459.1:1..27278, gap(48),AFTD01054460.1:1..997,gap(144),AFTD01054461.1:1..23863, gap(54),AFTD01054462.1:1..9091,gap(303),AFTD01054463.1:1..48026, gap(656),AFTD01054464.1:1..6452,gap(378),AFTD01054465.1:1..3711, gap(17),AFTD01054466.1:1..20233,gap(1664),AFTD01054467.1:1..170, gap(5923),AFTD01054468.1:1..51,gap(114),AFTD01054469.1:1..55002, gap(287),AFTD01054470.1:1..31076,gap(154),AFTD01054471.1:1..130, gap(58),AFTD01054472.1:1..198,gap(82),AFTD01054473.1:1..272, gap(158),AFTD01054474.1:1..168,gap(137),AFTD01054475.1:1..1469, gap(197),AFTD01054476.1:1..6487,gap(2358),AFTD01054477.1:1..2244, gap(26),AFTD01054478.1:1..3987,gap(52),AFTD01054479.1:1..134051, gap(116),AFTD01054480.1:1..1876,gap(728),AFTD01054481.1:1..2227, gap(1745),AFTD01054482.1:1..66314,gap(399),AFTD01054483.1:1..470, gap(64),AFTD01054484.1:1..101,gap(440),AFTD01054485.1:1..233, gap(345),AFTD01054486.1:1..644,gap(129),AFTD01054487.1:1..533, gap(341),AFTD01054488.1:1..32832,gap(418),AFTD01054489.1:1..22301, gap(1012),AFTD01054490.1:1..50490,gap(18),AFTD01054491.1:1..5752, gap(43),AFTD01054492.1:1..21864,gap(53),AFTD01054493.1:1..1218, gap(1530),AFTD01054494.1:1..256,gap(2630),AFTD01054495.1:1..298, gap(131),AFTD01054496.1:1..172,gap(233),AFTD01054497.1:1..207, gap(67),AFTD01054498.1:1..343,gap(115),AFTD01054499.1:1..39540, gap(23),AFTD01054500.1:1..163837,gap(407),AFTD01054501.1:1..27766, gap(45),AFTD01054502.1:1..7361,gap(120),AFTD01054503.1:1..65865, gap(11),AFTD01054504.1:1..9152,gap(204),AFTD01054505.1:1..410, gap(215),AFTD01054506.1:1..65955,gap(10),AFTD01054507.1:1..6274, gap(2168),AFTD01054508.1:1..266,gap(543),AFTD01054509.1:1..17990, gap(10),AFTD01054510.1:1..5581,gap(13),AFTD01054511.1:1..27281, gap(158),AFTD01054512.1:1..7388,gap(303),AFTD01054513.1:1..12428, gap(14),AFTD01054514.1:1..61318,gap(63),AFTD01054515.1:1..5647, gap(68),AFTD01054516.1:1..70343,gap(10),AFTD01054517.1:1..78783, gap(98),AFTD01054518.1:1..1621,gap(123),AFTD01054519.1:1..23480, gap(5485),AFTD01054520.1:1..2366,gap(937),AFTD01054521.1:1..2033, gap(310),AFTD01054522.1:1..21293,gap(176),AFTD01054523.1:1..60916, gap(225),AFTD01054524.1:1..61,gap(10),AFTD01054525.1:1..38876, gap(2823),AFTD01054526.1:1..10542,gap(220),AFTD01054527.1:1..11306, gap(62),AFTD01054528.1:1..210,gap(570),AFTD01054529.1:1..1194, gap(138),AFTD01054530.1:1..6205,gap(14),AFTD01054531.1:1..4881, gap(1373),AFTD01054532.1:1..3967,gap(11),AFTD01054533.1:1..11719, gap(680),AFTD01054534.1:1..61738,gap(28),AFTD01054535.1:1..2273, gap(10),AFTD01054536.1:1..4946,gap(42),AFTD01054537.1:1..46763, gap(34),AFTD01054538.1:1..5770,gap(388),AFTD01054539.1:1..3025, gap(39),AFTD01054540.1:1..42787,gap(482),AFTD01054541.1:1..6627, gap(152),AFTD01054542.1:1..40819,gap(96),AFTD01054543.1:1..26093, gap(145),AFTD01054544.1:1..17638,gap(40),AFTD01054545.1:1..268, gap(106),AFTD01054546.1:1..35191,gap(102),AFTD01054547.1:1..1331, gap(10),AFTD01054548.1:1..293,gap(106),AFTD01054549.1:1..4509, gap(10),AFTD01054550.1:1..355,gap(59),AFTD01054551.1:1..98683, gap(140),AFTD01054552.1:1..45931,gap(627),AFTD01054553.1:1..15172, gap(146),AFTD01054554.1:1..1186,gap(76),AFTD01054555.1:1..107072, gap(561),AFTD01054556.1:1..270,gap(459),AFTD01054557.1:1..127, gap(841),AFTD01054558.1:1..1424,gap(181),AFTD01054559.1:1..16449, gap(85),AFTD01054560.1:1..173,gap(5293),AFTD01054561.1:1..19987, gap(35),AFTD01054562.1:1..1336,gap(213),AFTD01054563.1:1..2586, gap(10),AFTD01054564.1:1..107958,gap(30),AFTD01054565.1:1..69068, gap(58),AFTD01054566.1:1..51218,gap(95),AFTD01054567.1:1..28073, gap(96),AFTD01054568.1:1..36696,gap(27),AFTD01054569.1:1..8775, gap(246),AFTD01054570.1:1..76988,gap(311),AFTD01054571.1:1..3171, gap(1890),AFTD01054572.1:1..263,gap(1061),AFTD01054573.1:1..21613, gap(62),AFTD01054574.1:1..5590,gap(189),AFTD01054575.1:1..10186, gap(10),AFTD01054576.1:1..3497,gap(2419),AFTD01054577.1:1..267, gap(1242),AFTD01054578.1:1..422,gap(104),AFTD01054579.1:1..272, gap(796),AFTD01054580.1:1..99172) //