LOCUS JAGSOG010000418 5046 bp DNA linear BCT 25-APR-2021 DEFINITION Actinospica durhamensis strain CSCA 57 NODE_418_length_5046_cov_25.7174, whole genome shotgun sequence. ACCESSION JAGSOG010000418 JAGSOG010000000 VERSION JAGSOG010000418.1 DBLINK BioProject: PRJNA610628 BioSample: SAMN18753151 KEYWORDS WGS. SOURCE Actinospica durhamensis ORGANISM Actinospica durhamensis Bacteria; Actinobacteria; Catenulisporales; Actinospicaceae; Actinospica. REFERENCE 1 (bases 1 to 5046) AUTHORS Kusuma,A.B., Putra,K.E., Nafisah,S., Loh,J., Nouioui,I. and Goodfellow,M. TITLE Genome based classification of Actinospica acidithermotolerans sp. nov., an actinobacterium isolated from an Indonesian hot spring JOURNAL Unpublished REFERENCE 2 (bases 1 to 5046) AUTHORS Kusuma,A.B., Putra,K.E., Nafisah,S., Loh,J., Nouioui,I. and Goodfellow,M. TITLE Direct Submission JOURNAL Submitted (19-APR-2021) Indonesian Centre for Extremophile Bioresources and Biotechnology (ICEBB), Faculty of Biotechnology, Sumbawa University of Technology, Jl. Raya Olat Maras, Moyo Hulu, Sumbawa, West Nusa Tenggara 84371, Indonesia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.1 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 73x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/20/2021 14:04:48 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 5.1 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 8,579 CDSs (total) :: 8,498 Genes (coding) :: 8,440 CDSs (with protein) :: 8,440 Genes (RNA) :: 81 rRNAs :: 3, 5, 8 (5S, 16S, 23S) complete rRNAs :: 2, 1 (5S, 16S) partial rRNAs :: 1, 4, 8 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 3 Pseudo Genes (total) :: 58 CDSs (without protein) :: 58 Pseudo Genes (ambiguous residues) :: 0 of 58 Pseudo Genes (frameshifted) :: 8 of 58 Pseudo Genes (incomplete) :: 51 of 58 Pseudo Genes (internal stop) :: 1 of 58 Pseudo Genes (multiple problems) :: 2 of 58 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5046 /organism="Actinospica durhamensis" /mol_type="genomic DNA" /submitter_seqid="NODE_418_length_5046_cov_25.7174" /strain="CSCA 57" /isolation_source="Spruce forest soil" /type_material="type strain of Actinospica durhamensis" /db_xref="taxon:1508375" /geo_loc_name="Italy: Gerenzano" gene <1..109 /locus_tag="KDL01_38950" CDS <1..109 /locus_tag="KDL01_38950" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_009212138.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=2 /transl_table=11 /product="LUD domain-containing protein" /protein_id="MBR7839305.1" /translation="PQTWIAGPSATSDIELDRVEGVHGPRRLDVILVEG" gene 223..1293 /locus_tag="KDL01_38955" CDS 223..1293 /locus_tag="KDL01_38955" /inference="COORDINATES: protein motif:HMM:NF012318.1,HMM:NF012803.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="trypsin-like peptidase domain-containing protein" /protein_id="MBR7839306.1" /translation="MLHRRLVAWGVAGAVAVGGGLLGGCSSSSSSSSTPSSNATVSVQ GGASDLQSNYESVISTVMPSVVQINTTSELGSGIVLDSKGDIVTNNHVVAGSTSFKVT LSTSSQSYAATLVAGFPQGDLAVIKLTDPPSGLRPAQFADSSKLTVGQIVLAMGNPIG LSSSATNGIISATGRTVTEPQSDNTPAATLTDMIQTSAAINPGNSGGALVDLTGAVVG IPTLTAVDPELGGAFPGIGFAIASNTAKDIADQIVEHGKVVDSGLASLGITGRTVVNT NAQPVGVGVVSTTAGGPAADAGIVAGDVIVSLDNTAVTSLAQMQELLATLSPGDKVPV GLIKADGSKPTVNVTLGTLSTS" gene 1798..3546 /locus_tag="KDL01_38960" CDS 1798..3546 /locus_tag="KDL01_38960" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003972818.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="nitrite/sulfite reductase" /protein_id="MBR7839307.1" /translation="MTTPESRPAATSSTAAAADAAEPVASVKQHQIRRHRGEGQWAKG HFTPLNNNEQFKKDDDGLNVRARIENIYSVRGFDSIDGSDLRGRMRWWGLYTQRRPGI DGGRTAVLEPHELDDEYFMLRVRIDGGRLTLAQLRAIATVSTEYARGTADITDRQNIQ LHWVRIEDVPAIWRILEGVGLTTAEACGDVPRVILGSPVAGVARDEILDGTPAIEEIT SRFIGSPEFSNLPRKFKTAISGLQDVVHEANDISFVGVVHPELGPGFDLWVGGGLSTN PQFAKRLGAFVTLAEVPEVWAGVCGIFRDYGYRRLRTRARLKFLMADWGPVRFREVLE TEYLKRALPDGPAPAFVPPAERDHVGVHEQKDGAFYVGFAPRVGRVDGPTLARIADAA EAAGSDRVRTTADQKMLILDVAQDRVEPLIEALDALDLQVRPSVFRRHTMACTGIEFC KLAIVETKALGSSVIDELEKRLAGFDTPITININGCPNSCARIQTADIGLKGQIVRDA AGEQVEGFQVHLGGHFGADLDDAGSFGRKVRGLKVTAVELPDYIERVVRRYAAGREQG ESFATWTVRATEAELA" gene 3606..4763 /locus_tag="KDL01_38965" CDS 3606..4763 /locus_tag="KDL01_38965" /EC_number="2.3.1.9" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005141495.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="acetyl-CoA C-acetyltransferase" /protein_id="MBR7839308.1" /translation="MSEAYIVGAVRTPVGRKGGALSAVHPADLGAHVLRALMERTGVD PGAVEDVVFGCIDTVGPQSTDIARTAWLAAGLPEHVPGVTIDRQCGSSQQAVHFAAQA VMSGTSDLVVAGGVQSMSQIPLWYSGSAAAEPLGLTDGPFRGSVGWTERYGAAPVSQF HGAERIAAEWKISRAEMQEWALRSHQRALAAIDAGHFTREIAPYGEFAVDEGPRRGTS LEQMAGLKTLVPGGLLTAAVSSPTNDASAALLLASEQAVREHGLTPRARIHHLSVRGD DPIRMLTAPIPATTHALRKTGLGFEDIDLVEINEAFASVVLAWLRETGCDPAKVNVNG GALALGHPVGATGARLMTTLLHELERTGGRYGLQTMCEGGGQANVTIIERL" BASE COUNT 752 a 1819 c 1782 g 693 t ORIGIN 1 cccgcagacc tggatcgccg gaccctcggc caccagcgac atcgaactcg accgagtcga 61 aggagtacac ggaccacgac gactcgacgt gatcttggtg gagggctgac acggtcgcgg 121 cagcggctca ttcggcccat cgggcgtgcg gctgacgggc attcgggttc tcctggaagt 181 cggggctgag gagaatccga gagccgagga tggtggtcca gggtgctgca caggcgactc 241 gtggcatggg gtgtggccgg ggccgtggca gtcggcggcg ggctgctcgg cggctgttcg 301 tcctcgtcct cgtcctcttc gacaccgtcg agcaatgcga cggtgagcgt ccagggcggc 361 gcgagcgacc tgcagtccaa ctacgagtcg gtgatctcca ccgtcatgcc gtcggtggtg 421 cagatcaaca ccaccagtga gctcgggtcc gggatcgtgt tggacagcaa gggcgacatc 481 gtcaccaaca accacgtggt ggccgggtcg acctcgttca aggtcaccct gtcgacctcg 541 agtcagagct atgcggccac cctggtggcc gggttcccgc agggcgacct cgcggtgatc 601 aagctgaccg atccgccctc gggcctgcgc ccggcgcagt tcgccgactc ctcgaagctg 661 acggtggggc agatcgtgct ggccatgggc aacccgatcg gcctgtcgag ttcggcgacg 721 aacgggatca tctcggccac cggacgcacc gtcaccgaac cccagtcgga caacaccccc 781 gccgccaccc tcaccgacat gatccagacc tcggcggcca tcaaccccgg caacagcggc 841 ggcgcgctgg tggacctgac cggcgcggtg gtgggcatcc cgacgctgac cgcggtggac 901 ccggagctcg gcggcgcgtt cccggggatc ggcttcgcca tcgcctccaa cacggccaag 961 gacatcgccg accagatcgt cgagcacggc aaggtggtcg actccggtct cgcctcgctc 1021 ggcatcaccg gccgcacggt cgtcaacacc aacgcccagc cggtcggcgt cggcgtggtc 1081 tccaccaccg cgggcggtcc ggcggccgac gccgggatcg tcgccggcga cgtgatcgtc 1141 tcgctggaca acaccgcagt cacctcactc gcgcagatgc aggaactgct cgccaccctg 1201 agccccgggg acaaggtgcc ggtcggtctg atcaaggcgg acggctcgaa gcccacggtg 1261 aacgtgacgc tcggcacgct ctccacgagc tagcacagcc gcagtaccgg cacgcggtac 1321 cggcggccgg gaacggtgcg tcccgcggtg ccgaccggcg ggaacgggca gggcggcgcg 1381 ggaactccga cgccgcccgg cgccgcgcgc agccgtctca cgacgggtcc gtatgctggg 1441 atccgctcga catcccccag atccggtgcg accctgggcc catgtcccct gtcgagtcag 1501 ccgaccggct ttccgccgcg ctccgcaccg tgtgcgggcg acgcgtggcc ctggtagccc 1561 gcaggcacgt ggacttcggc cggacctcca gcgcgatctg tcaggcttga cggcctgcac 1621 cccttcgcgg aagggttcgc cgtcgacgac gcccggcgcc gacctccgcc gcccgcagcg 1681 catcccgctg ctcccggccg gatcccgcgc ccacgcgtca cccgccgacg ccgccccgac 1741 cgcacgcgag tcgccctcgc tcctccgccg ccgatcctga cgaaggacac ccccgccatg 1801 acgacccccg agtctcgtcc cgccgccacg tcctcgaccg ctgccgccgc cgacgcggcc 1861 gagccggtcg cgtcggtcaa gcagcaccag atccgccgac accgcggcga ggggcagtgg 1921 gccaaggggc acttcacgcc gctcaacaac aacgagcagt tcaagaagga cgacgacggg 1981 ctcaacgtcc gcgcgcgaat cgagaacatc tactcggtac gcgggttcga ctccatcgac 2041 ggctcggatc tgcgcggccg gatgcgctgg tgggggctct acacccagcg gcgtcccggg 2101 atcgacggcg gacgcactgc cgtgctcgag ccgcacgagc tcgacgacga gtacttcatg 2161 ctgcgggtgc gcatcgacgg cggacgcctg acgctggctc agctgcgcgc gatcgccacc 2221 gtctcgaccg agtacgcgcg cggcaccgcc gacatcaccg accggcagaa catccagctg 2281 cactgggtgc ggatcgagga cgtgccggcg atctggcgca tcctcgaggg cgtcgggctg 2341 accacggccg aggcgtgcgg cgacgtcccg cgcgtcatcc tcggctcgcc ggtggcgggg 2401 gtggccaggg acgagatcct ggacggcacg cccgcgatcg aggagatcac cagccggttc 2461 atcggctccc ccgagttctc caacctgccg cgcaagttca agaccgcgat ctccgggctg 2521 caggacgtgg tgcacgaggc caacgacatc tccttcgtcg gtgtggtgca ccccgagctc 2581 ggccccggct tcgacctgtg ggtcggcggc gggctctcga cgaacccgca gttcgccaag 2641 cggctcggcg ccttcgtgac gctggccgag gtgcccgagg tgtgggccgg ggtgtgcggg 2701 atcttccgcg actacggcta ccgacggctg cgcacccgcg cccggctcaa gttcctgatg 2761 gcggactggg gcccggtgcg cttccgcgag gtgctcgaga ccgagtacct caagcgggcg 2821 ctgcccgacg gtccggcccc cgccttcgtc ccgccggccg agcgcgacca cgtgggcgtg 2881 cacgaacaga aggacggcgc gttctacgtc ggcttcgcgc cgcgggtggg ccgggtggac 2941 ggcccgacgc tggcccggat cgcggacgcg gccgaggcgg ccggctcgga ccgggtgcgc 3001 accacggccg accagaagat gctgatcctc gacgtggcgc aggaccgggt ggagccgctg 3061 atcgaggccc tcgacgcgct cgacctgcag gtgcgcccga gcgtcttccg ccgccacacc 3121 atggcctgca ccggaatcga gttctgcaag ctcgcgatcg tggagaccaa ggcgctcggc 3181 tcctcggtga tcgacgagct ggagaagcgg ctcgcgggct tcgacacgcc gatcacgatc 3241 aacatcaacg gctgccccaa ctcctgcgcc cggattcaga ccgctgacat cggcctcaag 3301 ggccagatcg tgcgcgacgc ggcgggcgag caggtggagg gcttccaggt gcacctcggc 3361 ggccacttcg gcgccgacct cgacgacgcg ggctccttcg gccgcaaggt acgcgggctg 3421 aaggtgaccg cggtggagct gccggactac atcgagcgcg tggtgcgccg gtacgcggcg 3481 gggcgcgagc agggcgagtc cttcgcgacc tggacggtcc gggcgaccga ggccgagctg 3541 gcgtagcgcc gcaacgaccc gtaccggccg gtaacaaatc cggccgggcg cagtacgctt 3601 ggctcatgag cgaggcgtat atcgtcggtg cggtccgtac tcccgtcggc cggaagggcg 3661 gcgcgctcag cgccgtgcac ccggccgacc tcggcgcgca cgtgctgcgt gccctgatgg 3721 agcgcaccgg ggtggatccg ggcgcggtgg aggacgtggt cttcgggtgc atcgacacgg 3781 tcgggccgca gagcacggac atcgcgcgca cggcctggct ggcggccggg ctgcccgagc 3841 acgtgcccgg cgtgaccatc gaccggcagt gcgggtcctc gcagcaggcg gtgcatttcg 3901 cggcgcaggc ggtcatgtcc ggcaccagcg atctcgtggt ggccggcggc gtgcagagca 3961 tgtcgcagat cccgctgtgg tactcaggct ccgccgcggc cgagccgctc gggctcaccg 4021 acgggccgtt ccgcggctcg gtcggctgga ccgagcgcta cggcgcggcg ccggtgagcc 4081 agttccacgg cgccgagcgg atcgcggccg agtggaagat ctcgcgggcg gagatgcagg 4141 agtgggcgct gcgctcgcac cagcgcgcgc tggccgcgat cgacgcgggc cacttcaccc 4201 gggagatcgc gccctacggc gagttcgcgg tggacgaggg gccgcggcgc gggaccagcc 4261 tggagcagat ggccggtctc aagaccctgg ttccgggcgg actgctcacc gccgcggtct 4321 cctcccccac caacgacgcc tcggcggcgc tgctgctcgc ctccgagcag gcggtgcgtg 4381 agcacgggct gaccccccgg gcccggatcc accacctgtc ggtgcgcggc gacgacccga 4441 tccgcatgct cacggccccg atcccggcca ccacgcacgc gctgcgcaag accgggctcg 4501 gcttcgagga catcgacctg gtcgagatca acgaggcctt cgcctccgtg gtgctggcct 4561 ggctgcgtga gaccgggtgc gatccggcca aggtgaacgt gaacggcggc gcgctcgcgc 4621 tgggccaccc ggtcggggcg accggcgcgc ggctgatgac gacgctgctg cacgagctcg 4681 agcgcaccgg cggccgttac gggctgcaga cgatgtgcga gggcggcggc caggcgaacg 4741 tgaccatcat cgaaaggctc tgagcgcaag gctctgagag agtcgcacgg tataccgaca 4801 gccgcggccg cgtgatcacg cggccgccgt cggcttgccc gcgcatgatc acggaattgt 4861 tacgcgtctc aaccgaccgt ccgcatggcg ggacgaggta gacgcggcgg gttcgggatg 4921 gcactctcga agcatgtccc gcaccggaat cgccctcgta ggccgacttc acgtcgacct 4981 caagcgcgtc tccagcgcgg tctgtctgcc gacgctccgc tagctccccc cgctgccatc 5041 cgagcc //