LOCUS JAGRDT010000486 3202 bp DNA linear ENV 13-OCT-2021 DEFINITION MAG: Rhodobacteraceae bacterium isolate HKST-UBA110 2012-05-30_1_(paired)_contig_125730, whole genome shotgun sequence. ACCESSION JAGRDT010000486 JAGRDT010000000 VERSION JAGRDT010000486.1 DBLINK BioProject: PRJNA432264 BioSample: SAMN14564174 KEYWORDS WGS; Metagenome Assembled Genome; MAG. SOURCE Rhodobacteraceae bacterium (activated sludge metagenome) ORGANISM Rhodobacteraceae bacterium Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae. REFERENCE 1 (bases 1 to 3202) AUTHORS Wang,Y., Ye,J., Ju,F., Liu,L., Boyd,J.A., Deng,Y., Parks,D.H., Jiang,X., Yin,X., Woodcroft,B.J., Tyson,G.W., Hugenholtz,P., Polz,M.F. and Zhang,T. TITLE Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years JOURNAL Microbiome 9 (1), 199 (2021) PUBMED 34615557 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3202) AUTHORS Zhang,T. TITLE Direct Submission JOURNAL Submitted (14-APR-2020) Civil Engineering, The University Hong Kong, Pokfulam Road, Hong Kong 999077, Hong Kong COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: CLC de novo assembler v. 6.04 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 169x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/20/2021 04:47:34 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 5.1 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,825 CDSs (total) :: 3,795 Genes (coding) :: 3,316 CDSs (with protein) :: 3,316 Genes (RNA) :: 30 tRNAs :: 28 ncRNAs :: 2 Pseudo Genes (total) :: 479 CDSs (without protein) :: 479 Pseudo Genes (ambiguous residues) :: 403 of 479 Pseudo Genes (frameshifted) :: 311 of 479 Pseudo Genes (incomplete) :: 13 of 479 Pseudo Genes (internal stop) :: 2 of 479 Pseudo Genes (multiple problems) :: 250 of 479 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3202 /organism="Rhodobacteraceae bacterium" /mol_type="genomic DNA" /submitter_seqid="2012-05-30_1_(paired)_contig_125730" /isolate="HKST-UBA110" /isolation_source="activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015" /db_xref="taxon:1904441" /environmental_sample /geo_loc_name="China:Hong Kong SAR, Shatin waste water treatment plant" /lat_lon="22.406236 N 114.213394 E" /metagenome_source="activated sludge metagenome" /note="metagenomic" gene <1..174 /locus_tag="KDE17_15365" CDS <1..174 /locus_tag="KDE17_15365" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_018000216.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="SlyX family protein" /protein_id="MCB2140407.1" /translation="LAHLRRMVDDLSEVVARQSREIDLLTRRIALLMERAAEAEAERT GTIPLADQRPPHW" gene 261..1337 /locus_tag="KDE17_15370" CDS 261..1337 /locus_tag="KDE17_15370" /inference="COORDINATES: protein motif:HMM:NF016999.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="AbrB family transcriptional regulator" /protein_id="MCB2140408.1" /translation="MTSRLSAFFGAPHWPTVALTYAIGTSGGVVAMLAHLPLPMLLGS LLAVGAAALFGLRPLGRLPEAPQRLRMLFIPVIGVAIGGAARPGLLQEAVAWLPSLAI LAIFIPAVHYAGFRILVATGRIDKVTALFATAPGGLVETVQMGEEAGADMQMLIMLQF LRLILTIVFIPLFFTWLVGHAVGSAGGAAVEGAEMGIFDLAVLVAAGVLGAIIGLKLR LPAGHVLGPIFLSGAAHLAGLTAAVPPQVTVWATQVVIGTSLGVRFGGMPKRRILEAL RLSLISVTLMMGGAGLIAWSLASAVNETVPAVFLAFAPGGLVEMGLIALSLDLSILYV TAHHLLRIILAVSVARVFAHRLAR" gene complement(1365..2942) /locus_tag="KDE17_15375" CDS complement(1365..2942) /locus_tag="KDE17_15375" /inference="COORDINATES: protein motif:HMM:NF024491.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phospholipase D family protein" /protein_id="MCB2140409.1" /translation="MRRRGGRIGRAGRALAVLATVIAAPILVLRLLFPLPAADGRTAS TAIAPSERTALGASILPLAAAHPGTSGVMALENGIDAFAARMALIHAAEVSIDAQYYI WQDDLTGLRLLSELSAAANRGVRVRLLVDDNGTPGLDQELLALSRLPTAEVRLFNPFV LRSPRSLSYLFDFPRLNRRMHNKSFTVDGVATIVGGRNIGNVYFETGSGHVYSDLDVL AIGPAAQAVGADFDRYWNSASAFAVEALVAPEPDAEGRLAARDAANRDTPQAVAYRDA VLTSRLAQQIADQTLPVEWVAVRLFSDDPAKALGRIETEGLMIRALMAEIGRPSSTYD VISAYFVPGAQATATLGQIAGSGVRVRTLTNALEATDVTPVHSGYAKYRGALIDAGVE VWELKSEGGERKSVDDFGIVGISRTALHAKTFQIDDHRAFVGSFNFDPRSKRLNCEMG LLIDSPRLAGLIAVWLDRELPKLAYQVRRNASGGLVWIDRPGQPDEIVWTTEPNTTWP LRAAVWLIGLLPVEWLL" gene complement(2939..>3202) /locus_tag="KDE17_15380" CDS complement(2939..>3202) /locus_tag="KDE17_15380" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="MCB2140410.1" /translation="DSVAADAGGAGLRIHVETEGAVTSVATLLARMQQDASIRSRGPV SFLIADRATGTEVEVATGRDFPINPQIKGAIKAMSGVALVEEV" BASE COUNT 481 a 1077 c 1094 g 550 t ORIGIN 1 ctggcgcatc tgcggcgcat ggtcgacgac ctgtcggaag tggtcgcgcg ccagtcgcgc 61 gagatcgacc tgctgacgcg gcgcatcgcg cttctgatgg aacgcgccgc ggaggcagag 121 gccgagcgga ccggcaccat tcccctggcg gaccagcgac cgccgcattg gtagaaccgc 181 caagaacctg cccgcgctga caggttggtg tcaggatcgc gggcaagacc ctcgatcaac 241 ctgccgtggt ccagcccccg atgacatcca gactatccgc attcttcggt gcaccgcact 301 ggccgaccgt cgcgctgacc tatgccatcg gcacgtcggg cggggtggtg gccatgcttg 361 cccacctgcc cctgccgatg ttgctgggat cgcttctggc ggtcggggcc gccgcgcttt 421 tcggtctcag gccgctcggg cggttgcccg aggcgccgca gcggctcagg atgttgttca 481 tccctgtgat cggcgttgcg atcggcgggg cggcccgccc cggcctgctt caagaggcgg 541 tcgcctggct gccctcgctt gccatcctcg ccatcttcat tccggcagtc cactacgccg 601 ggttcaggat cctggtggcg accggccgga tcgacaaggt cacggcgctt ttcgctaccg 661 cccccggagg cctggtcgag accgtgcaga tgggcgaaga agccggcgcg gacatgcaga 721 tgctgatcat gctgcaattc ctgcggctga tcctgacgat cgtcttcatt ccgctgttct 781 tcacctggct ggtcggccat gccgtcggtt cggccggcgg cgccgccgtc gagggcgcgg 841 agatggggat cttcgacctt gccgtcctgg tcgcggcggg cgttcttggc gcgatcatcg 901 ggttgaagct gcggcttccc gcgggccatg tgctgggccc gatcttcctg tccggggcgg 961 cgcatcttgc ggggctgacc gcggcggtgc cgccgcaggt cacggtctgg gcgacgcagg 1021 tcgtcatcgg cacctcgctg ggcgtgcgat ttggcgggat gcccaagcgc cgcatcctgg 1081 aagcgctcag gctgtcgctg atcagcgtaa cgctgatgat gggcggcgcc ggcctgattg 1141 cctggagcct tgcctcggcg gtgaacgaaa ccgtgccggc ggtctttctg gccttcgcgc 1201 ccggcgggct tgtcgaaatg gggctgatcg cgctcagcct ggatctgtcg attctatatg 1261 ttaccgcgca tcacctcttg cggatcatcc ttgcggtgtc ggttgcgcgc gtgttcgccc 1321 accgccttgc acggtaggtc ggcctcgggc gcggccgagc cgcgtcaaag cagccattcg 1381 acaggcagaa gcccgatcag ccagacggcg gcgcgcaggg gccatgtggt gttcggctcg 1441 gtcgtccaga cgatttcgtc cggctgcccc ggccggtcga tccagacaag cccgcccgaa 1501 gcgttgcgcc ggacctgata ggcaagcttc ggcagttccc ggtcaagcca gacggcgatc 1561 agcccggcaa gccgcgggct gtcgatcagg agccccatct cgcagttcag ccgtttcgac 1621 cgggggtcga agttgaacga cccgacaaag gcccggtggt cgtcgatctg gaatgtcttg 1681 gcgtggagcg cggtgcgcga gatcccgaca atgccgaaat cgtcgacaga ctttcgttcg 1741 cccccttcgc ttttcagttc ccagacctcg accccggcgt cgatcagcgc gccacggtat 1801 ttggcgtagc cggaatggac cggcgtcacg tccgtcgcct caagcgcgtt ggtcagcgtg 1861 cggacgcgaa ccccggatcc ggcgatctgg cccagtgttg ccgtggcctg agcgccgggc 1921 acgaaatagg ccgatatgac atcataggtc gatgacggac gcccgatctc ggccatcagt 1981 gcgcggatca tcaggccctc ggtttcgatc ctgcccagcg ccttggccgg gtcgtcgctg 2041 aaaagccgca ccgcgaccca ttcgaccggc agggtctggt cggcgatctg ctgcgccagc 2101 cgcgacgtca ggaccgcatc ccggtaggcg acggcctgcg gggtatcgcg gttggcggcg 2161 tcgcgggcgg caaggcggcc ttcggcgtcg ggttcgggcg caacaagggc ttcgaccgcg 2221 aatgccgacg cgctgttcca gtaacggtcg aaatccgcgc cgaccgcctg cgccgcgggg 2281 ccaatcgcga gcacgtcgag atcggaatag acatgcccgc ttccggtctc gaaatagaca 2341 ttgccaatgt tgcgcccgcc gacgatcgtg gccacgccgt ccacggtgaa ggacttgttg 2401 tgcatgcgcc ggttcaggcg cgggaagtcg aacagatagc tcagcgatcg cgggctgcgc 2461 aggacgaagg gattgaacag gcgcacctcg gccgtaggca ggcgcgacag ggccagcagt 2521 tcctgatcca ggcccggcgt cccgttgtcg tctaccagca gacgcacccg caccccgcgg 2581 ttggccgcgg cggacagttc ggacagtagc cgcaggccgg tcaagtcgtc ctgccagatg 2641 tagtactgag cgtcgatcga tacctcggcg gcgtggatca gggccatccg cgccgcgaag 2701 gcgtcgatcc cgttttccag cgccatgacg cccgaggtgc ccggatgggc agcggcaagc 2761 ggcaggatcg aggcccccag cgcggtccgc tccgagggtg cgatggcggt gctggccgtt 2821 cgcccgtcgg cggcaggaag cgggaacaga agcctgagga cgaggatcgg cgcggcaatg 2881 accgtggcaa gaaccgccag cgcgcgtccg gcgcgcccga tcctcccgcc ccggcgcctc 2941 acacctcctc caccagtgcg accccggaca tggccttgat cgcccccttg atctgcggat 3001 tgatcggaaa gtcacggccg gtcgccacct cgacctcggt tccggtcgca cgatcggcga 3061 tcaggaagct gaccgggcca cgcgaccgga tcgacgcatc ctgctgcatg cgcgccagaa 3121 gggtcgcgac agaggtgacg gcaccctctg tctccacatg gatgcgcagg ccggcgccgc 3181 cggcatcggc cgcgacgctg tc //