LOCUS JAFBAG010000187 3286 bp DNA linear ENV 23-FEB-2023 DEFINITION MAG: Pseudolabrys sp. isolate CP_BM_RX_R9_25 BM_RX_R9_k147_1529647, whole genome shotgun sequence. ACCESSION JAFBAG010000187 JAFBAG010000000 VERSION JAFBAG010000187.1 DBLINK BioProject: PRJNA687273 BioSample: SAMN17140666 KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG. SOURCE Pseudolabrys sp. (rhizosphere metagenome) ORGANISM Pseudolabrys sp. Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Xanthobacteraceae; Pseudolabrys. REFERENCE 1 (bases 1 to 3286) AUTHORS Camargo,A.P., de Souza,R.S.C., Jose,J., Gerhardt,I.R., Dante,R.A., Mukherjee,S., Huntemann,M., Kyrpides,N.C., Carazzolle,M.F. and Arruda,P. TITLE Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot JOURNAL ISME J 17 (3), 354-370 (2023) PUBMED 36536072 REFERENCE 2 (bases 1 to 3286) AUTHORS Camargo,A.P. TITLE Direct Submission JOURNAL Submitted (28-DEC-2020) Plant Microbiome, The Genomics for Climate Change Research Center, Avenida Candido Rondon, Campinas, SP 13083-875, Brazil COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: MEGAHIT v. 1.2.7 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 10.4381895x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/30/2021 07:45:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 5.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,219 CDSs (total) :: 3,172 Genes (coding) :: 3,156 CDSs (with protein) :: 3,156 Genes (RNA) :: 47 tRNAs :: 42 ncRNAs :: 5 Pseudo Genes (total) :: 16 CDSs (without protein) :: 16 Pseudo Genes (ambiguous residues) :: 0 of 16 Pseudo Genes (frameshifted) :: 8 of 16 Pseudo Genes (incomplete) :: 7 of 16 Pseudo Genes (internal stop) :: 1 of 16 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3286 /organism="Pseudolabrys sp." /mol_type="genomic DNA" /submitter_seqid="BM_RX_R9_k147_1529647" /isolate="CP_BM_RX_R9_25" /isolation_source="Rhizosphere of Barbacenia macrantha specimens" /db_xref="taxon:1960880" /environmental_sample /geo_loc_name="Brazil: Minas Gerais" /lat_lon="19.2822 S 43.5936 W" /collection_date="06-Mar-2017" /metagenome_source="rhizosphere metagenome" /note="metagenomic" gene <1..357 /locus_tag="JOZ70_08225" CDS <1..357 /locus_tag="JOZ70_08225" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_018269049.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme" /protein_id="MBV9955223.1" /translation="KHLKTSHWERERHQDRAARVKAVLIASGLQVMPSTTHIVPVLVG DPEKCKAASDLLLEEHGIYIQPINYPTVPRGMERLRITPSPYHDDALVDRLAEALVDV WERLGLPMANKAMAAE" gene complement(360..1544) /locus_tag="JOZ70_08230" CDS complement(360..1544) /locus_tag="JOZ70_08230" /inference="COORDINATES: protein motif:HMM:NF016999.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="AbrB family transcriptional regulator" /protein_id="MBV9955224.1" /translation="MTAQRAAAIDRPAHFAALSSRLAVPFLLSVDHNRMLVHFIETMA FAAIGGTLFGLAGMPGGWLSGAILVVAAAALTGRPMHVPVRVSRTIFVVIGISLGAVV TPETLRGIATYPLSVAVLVVAVVVAGYLGAEYLRRVHGWDRVSAYLGAAPGGLSQCVA IATELDADVRGVAIVQTVRVAMIAVGLPAALTILGLVAPASRGIGGEFSWAKLDELAI LFAISTLVAVAAYRVRFPGGLLFGSMVSSAVLHGTGWIEAAVPWWIANTAMVMLGGMT GSRFANTPLRLLMRHMGAALGSVVVAALIAGLFAGFLIVGLAVRPADVLIAFAPGSVD AMMLLALALNIDPVYVGAHHLTRIFFVSVTMPLFAGYAARLEDKVVDESKLSGPSPDD ED" gene complement(1570..2220) /locus_tag="JOZ70_08235" CDS complement(1570..2220) /locus_tag="JOZ70_08235" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007598960.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="response regulator transcription factor" /protein_id="MBV9955225.1" /translation="MAEKSSPRESIYVVDDDASLREALAMVFTVAGYRVTSFADGASF LAAAHVRPPSCVILDVHMPALSGMEILNALKAPHYPAPIFILSGDAEVAQAVTAIKRG AFDYIVKPFDAHDIVTRIGQALRRGGAQQSASRFPGEEALTGREREVLTQIAAGYSNK EAGRRLGISPRTIEVHRARIMEKLGARNAADLVRIVLAGASSRVNRPLACPSELVA" gene 2576..>3286 /locus_tag="JOZ70_08240" CDS 2576..>3286 /locus_tag="JOZ70_08240" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_018643425.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hybrid sensor histidine kinase/response regulator" /protein_id="MBV9955226.1" /translation="MLQGWVVIAVALGYIGLLFLIASYGDRIRSFAREQRNALLIYPL SLAIYCTSWTFFGSVGSASRTGYEFLTIYVGPALMLGLFAPLLVRIVRLAKAQNITSI ADFIAARYGKGQAVAATVALIAIVGTVPYIALQLKAVSFSLETILDHIMPSTGGVRPV LGDIALFVALSMAMFAVLFGTRHIDATEHQDGLMLAVAAESIVKLFAFLAVGMFVTFW MFDGPAALLAAASEQPKIT" BASE COUNT 653 a 1067 c 992 g 574 t ORIGIN 1 aagcatctca agacgtcgca ttgggagcgc gagcgccatc aggatcgcgc cgcacgcgtc 61 aaagcggtct taattgccag cggcctgcag gtgatgccga gcacgacgca tatcgtgccg 121 gtgctggttg gcgatcccga aaaatgcaag gcggcgagcg atctcctgct cgaagagcac 181 ggaatttaca tccagccgat caactatccg accgtaccgc gcggaatgga gcgtctgcgc 241 atcacgccct cgccctacca cgacgacgcc ctggtcgatc gtctcgcgga agccctggtt 301 gatgtctggg agaggcttgg gctgccgatg gccaacaagg ccatggccgc ggaatagccc 361 tagtcctcgt cgtcgggcga cgggcccgac aatttgctct cgtccaccac tttgtcttcg 421 agccgcgcgg catatcccgc gaacagcggc atcgtcaccg acacgaagaa tatgcgcgtg 481 agatggtgcg cgccgacgta aaccggatcg atattcagcg cgagtgcaag cagcatcatc 541 gcatccaccg agccgggggc gaatgcaatc aagacgtcgg ctggccgcac ggccaaacct 601 acgatcaaaa agccggcgaa caggcctgcg atcagcgcgg cgacaacgac cgacccgagc 661 gcggcgccca tgtgccgcat cagaagcctc agcggcgtgt tcgcaaaccg agaaccggtc 721 atgccgccga gcatgaccat ggcggtgttg gcgatccacc acggcaccgc cgcttcaatc 781 cagcccgtgc catgcaaaac tgcggatgaa accatcgagc cgaacagcaa gccgcccgga 841 aaacgaacgc ggtaagcagc cacggcgacc aaggtcgaga tggcaaataa aattgccagt 901 tcatcgagct tggcccagct gaattcaccc ccgatgccgc ggctcgcggg cgcaaccaat 961 cccaggattg tcagagccgc gggcaatccc acggcgatca tcgcgacgcg cacggtctgc 1021 acgatcgcca cgccgcgcac atcggcgtcg agctctgtcg cgatcgcaac gcactgggaa 1081 agaccgccag gcgccgcgcc gagataggcc gaaacccgat cccaaccgtg aacgcggcgc 1141 agatattccg cgccgagata ccccgccacc acgacagcaa cgaccagcac cgcgacactc 1201 agcgggtacg tagcgatgcc gcgcagggtt tcgggcgtca cgaccgcgcc tagcgagatt 1261 ccgatgacaa cgaaaatcgt gcggctcacc cgcaccggca catgcatcgg acgtccggta 1321 agggccgcgg ctgccaccac cagaatcgca cccgacagcc agccgcccgg catgccagcc 1381 aaaccgaaga gagtgccgcc gatagccgcg aacgccatcg tttcgatgaa gtgcacgagc 1441 atccgattgt ggtcgacgga cagaagaaac ggcacggcaa gcctgctgga cagcgcagca 1501 aaatgcgccg gccgatcaat ggcggcggcg cgttgcgcgg tcaatgcacg ctggcgcgca 1561 ggagctatgt caggcgacga gttcggacgg acacgccagt gggcggttga cccgggacga 1621 agccccggcg agcacgatcc gcacgagatc ggccgcgttc ctggcgccga gtttctccat 1681 gatgcgcgcg cggtggacct cgattgtgcg cgggctgatg ccgaggcgcc ttccggcttc 1741 cttgttggaa taaccggctg cgatttgggt caagacctcc cgctcgcggc cggtcagtgc 1801 ttcttcaccc ggaaagcggc tggccgattg ctgcgcgccg ccgcgccgca gggcctggcc 1861 aatccgcgtc acgatatcat gtgcatcgaa cggcttgacg atgtagtcga atgcgccgcg 1921 cttgatcgcc gtgacggcct gcgcgacctc cgcatcgccg gacaggatga agatcggcgc 1981 cggatagtgg ggcgccttca gcgcattcag gatttccatt cccgagagcg caggcatatg 2041 aacgtcgagg atgacacacg acggcggccg gacgtgagcc gcagcaagaa atgacgcacc 2101 atcggcgaac gacgtgacgc ggtatcccgc gaccgtgaac accatcgcca gcgcttcgcg 2161 cagactggcg tcatcgtcga caacataaat actctcgcgc ggcgaacttt tttccgcgat 2221 caccatcgat gctcccccga gttcgatgtt acgcaggctg atatttgccc tgcacatgaa 2281 atgccagaca attgcttgca tcgcgttaaa gcgaatgatg cagagcgcgc gcttatcggt 2341 atcatcctgg ggaattccct actcggatac tgagcacgcg ccgcgcgagg aaattttatt 2401 cgtgtcctgg cgcgtgcaag tagttctgct taggcgtcac tttggtgccg acaagaatct 2461 cctcccctgc aaaagccagc gtttgcgcgg caaaatcgtc gcgagcttgg ccttcagtgt 2521 tgaccgcggc cgcgataaaa tcgcttctgg gacacgggtg tcagggcgtg cgggaatgct 2581 tcaaggttgg gtcgtaatcg ccgtcgcgct cggctacatc gggctcctct tcctcatcgc 2641 gagctatggc gaccgcatcc gcagctttgc gcgcgagcag cgcaacgcct tgctgatcta 2701 tcccctgtcg ctcgcgatct attgcacctc gtggactttc ttcggctccg tcggctcggc 2761 ctcgcgcacc ggctacgaat ttctgacgat ctatgtcggg ccagctttga tgctcggcct 2821 gttcgcaccc ttgctggtgc ggatcgtgcg gctcgccaaa gcgcagaaca tcacctcgat 2881 cgccgacttc atcgctgcgc gctatggcaa aggccaggcc gttgccgcca cggtggcgct 2941 gatcgccatt gtcgggacgg tgccttacat cgcgctgcag ctcaaagcgg tgtcgttttc 3001 gctcgagacg attctcgatc acatcatgcc ctcgaccggc ggcgtgcgac cggtgctcgg 3061 cgatatcgcc ttgttcgtcg cgctatccat ggcgatgttc gccgtgctgt tcggcacccg 3121 tcacattgac gccacggaac atcaggacgg tctgatgctc gcggttgcgg cggaatcgat 3181 cgtcaaacta tttgcgtttt tggccgtcgg catgttcgtg acgttctgga tgttcgacgg 3241 cccggccgcc ctgctcgcgg ccgcgagcga acagccgaaa atcacc //