LOCUS JADIMF010000127 3987 bp DNA linear ENV 04-JUN-2021 DEFINITION MAG: Candidatus Ornithospirochaeta stercoravium isolate 14700 A2M15__C381948_L3987_SRR9113710, whole genome shotgun sequence. ACCESSION JADIMF010000127 JADIMF010000000 VERSION JADIMF010000127.1 DBLINK BioProject: PRJNA543206 BioSample: SAMN15816953 KEYWORDS WGS; Metagenome Assembled Genome; MAG. SOURCE Candidatus Ornithospirochaeta stercoravium (gut metagenome) ORGANISM Candidatus Ornithospirochaeta stercoravium Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaetaceae incertae sedis; Candidatus Ornithospirochaeta. REFERENCE 1 (bases 1 to 3987) AUTHORS Gilroy,R., Ravi,A., Getino,M., Pursley,I., Horton,D.L., Alikhan,N.F., Baker,D., Gharbi,K., Hall,N., Watson,M., Adriaenssens,E.M., Foster-Nyarko,E., Jarju,S., Secka,A., Antonio,M., Oren,A., Chaudhuri,R.R., La Ragione,R., Hildebrand,F. and Pallen,M.J. TITLE Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture JOURNAL PeerJ 9, e10941 (2021) PUBMED 33868800 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3987) AUTHORS Gilroy,R. TITLE Direct Submission JOURNAL Submitted (20-OCT-2020) Microbes in the Food Chain, Quadram Institute BioScience, Norwich Research Park, Norwich NR4 7UQ, United Kingdom COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: MegaHIT v. 1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 336520x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/04/2020 10:37:46 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.13 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 2,067 CDSs (total) :: 2,020 Genes (coding) :: 2,013 CDSs (with protein) :: 2,013 Genes (RNA) :: 47 rRNAs :: 3, 2, 1 (5S, 16S, 23S) complete rRNAs :: 1 (5S) partial rRNAs :: 2, 2, 1 (5S, 16S, 23S) tRNAs :: 38 ncRNAs :: 3 Pseudo Genes (total) :: 7 CDSs (without protein) :: 7 Pseudo Genes (ambiguous residues) :: 0 of 7 Pseudo Genes (frameshifted) :: 3 of 7 Pseudo Genes (incomplete) :: 3 of 7 Pseudo Genes (internal stop) :: 1 of 7 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3987 /organism="Candidatus Ornithospirochaeta stercoravium" /mol_type="genomic DNA" /submitter_seqid="A2M15__C381948_L3987_SRR9113710" /isolate="14700" /isolation_source="feces" /host="Gallus gallus" /db_xref="taxon:2840897" /environmental_sample /geo_loc_name="United Kingdom: University of Surrey, Guildford" /lat_lon="51.243100 N 0.589500 W" /collection_date="2019" /metagenome_source="gut metagenome" /note="metagenomic" gene 46..666 /locus_tag="IAA72_07735" CDS 46..666 /locus_tag="IAA72_07735" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_008792970.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="TetR/AcrR family transcriptional regulator" /protein_id="MBO8469659.1" /translation="MAKPDRSIDPRILESAKEEFLDKGFLGASLNNICRKAGVTTGAL YKRFKGKEELFSALVDDTVDALRKVREEKAVLRDDITDEELWRAWNMDEGYMMWWFRF LYDRIDAMRLLLSSSEGTKYSHFEHEWVESMCQSTYAYYLKARDRGLVENEISEEEMH VMLSSFWMTIYEPIVHYFEWDELESLCSHICNLFNWHRMLGFRRPE" gene 663..2408 /locus_tag="IAA72_07740" CDS 663..2408 /locus_tag="IAA72_07740" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007859873.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="MBO8469660.1" /translation="MIRKIMKYANGYKRYTLFATIMVFIAVLCSIIPYFFVYQIINPL ITSSGISIEAAVSRIVLILVFLTLNFALYLGGLSLSHIAAFNILANIRKYIQKKLEGL PLGIIQDKGVGRLKKLVVDDVESLELLLAHAIPEGFGNLLVPLCIFIALILIDWKLAL LTIITVPIGLWAVSCMTKTGFDRMENYYRSAQVMNSTIIEYVNGMEVVKIFNKDGESY KRYQNDVKAYRDFTLDWYKACWPWMALYAGIFACPAFFSLPFGAMLVLHGYSTLSDLI LVLCLSFGLGTPLLKAIRFIPSLAQVGRKLDEIENTVNEKSLICSDKPYSGRNDDIVF DHVSFSYGQDEVIKDVSFNIRQGETVAFVGESGAGKSTLAKLIVHYYDVSKGHITIGG QDITDMSLEALNERISFVSQEQFLFNTSIKENIRIGKPGASDEEVLEAAGKAQCLDFI SRFEYGMDTMAGDSGTKLSGGERQRISIARAILKDAPIVVLDEATAFADPENEEKMEK AISEVVRNKTLIVLAHRISSIKNADCIYVIENGRITGNGRHEDLLRTNETYSRLWKIS QESIAWNVKNREVER" gene 2405..>3987 /locus_tag="IAA72_07745" CDS 2405..>3987 /locus_tag="IAA72_07745" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_009243968.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="MBO8469661.1" /translation="MTKFFIRILKFSGPYRNRVLSAAVFAFIKGVCVMMPLFLGFLMF SSFYDGTITIRSCWNYLLAMVVTVLLNIAATRLSDQMQSTAGYKIFADKRIALGEKLR KLPMGFFTAGNIGRISSVLSSDMVFVEENVMQSIAEMLSNAFTAIVINLFMFFIDWRI GLLTAVVSLLVVISAHFMNTSSLKHAAIRQKQNEKLTDAVISHIEGIGIIKSYNLTGE KSKELTKNIEETCRAALRYESSQVPWMVLHNALYTAGITGVIAFAFILFASGTITLPY LIGAMLFAFSIFVPLKTLYAESSRLTVMASCLDRIEALFEERTLPDEGRKHIEAVTES PEIEFRHVSFSYEDKETIHDVSFIALKDTMTALVGPSGGGKTTLANLLARFWDINNGS IMVRGVDIRDLPLSELMKQISMVFQRVYLFQDTVYANIVMGRPDATKEEVIEACQKAR CYDFIMSLPDGFDTIIGEGGASLSGGEKQRISIARCILKDAPIVILDEATASIDLDNE RYIQEAISELVKGKTLIVIA" BASE COUNT 1088 a 811 c 1011 g 1077 t ORIGIN 1 actgataatc taattatcga taatatgatt atcaatggag gcaatatggc aaaaccagat 61 agatcgattg acccgcggat acttgaaagc gccaaggaag aatttcttga taagggtttt 121 ttaggtgcgt ctctgaacaa tatatgcaga aaggcaggcg tcacgactgg agcattgtac 181 aagcggttca agggcaagga agagctcttt tccgctcttg tcgatgatac ggtggatgct 241 ctgagaaagg tgagggagga gaaggcggta cttcgggatg atataaccga tgaggaactg 301 tggagggcct ggaatatgga tgaagggtat atgatgtggt ggttccgctt tctgtatgac 361 cgtattgacg ccatgcgcct tcttctttcg tccagcgaag gaacaaagta ttcgcacttt 421 gaacatgagt gggtagaaag catgtgccag tcaacatatg cctactatct gaaggccagg 481 gacaggggct tggttgagaa tgaaataagc gaagaagaga tgcatgtgat gctctcgtct 541 ttctggatga caatatatga accaatcgtc cactactttg agtgggatga acttgaaagc 601 ctttgcagtc atatctgcaa tcttttcaac tggcacagaa tgctgggatt caggaggccg 661 gaatgatcag gaagatcatg aaatatgcaa atggctataa gaggtatact ctgtttgcaa 721 caataatggt tttcattgcc gttctttgtt cgattatccc gtatttcttt gtatatcaga 781 tcatcaatcc gctgataacc agcagtggga taagcattga ggccgcagtc tcaaggattg 841 tattgattct tgttttcctg acgctcaact ttgcccttta tcttggaggc ttatcgctgt 901 cgcatatagc ggcattcaac atactggcga acataaggaa atacatacag aaaaagcttg 961 aaggtcttcc attgggcatt attcaggaca agggagtcgg aaggctcaag aaacttgttg 1021 tcgatgatgt ggaaagcctt gaactccttc tggctcatgc gattccggaa ggttttggca 1081 atctgcttgt tcccctatgt attttcattg cactgatact gatagactgg aaactggcgc 1141 tgcttacaat catcacagtt ccaatcgggc tctgggctgt atcctgtatg acaaagacag 1201 gcttcgacag gatggagaac tactacagat ccgcacaggt aatgaactcc acgatcatag 1261 aatatgtcaa cggcatggaa gtcgttaaga tattcaacaa ggacggtgag tcttataagc 1321 gttatcagaa cgatgttaag gcgtaccggg atttcactct tgactggtat aaagcctgct 1381 ggccctggat ggcactttat gctggcatct ttgcctgccc cgcatttttc tcgctgccgt 1441 ttggcgccat gcttgtgctt cacggatact caacactctc agatcttatt cttgtcctat 1501 gcctgtcatt cggtcttgga acaccgcttc tcaaggcaat cagattcatt ccctctcttg 1561 cccaggtcgg acgaaagctt gatgaaattg agaatacagt caatgaaaaa agcctgatat 1621 gcagtgacaa gccttattca ggcaggaacg atgatatcgt ctttgaccat gtctcattct 1681 catatggaca ggatgaggtg ataaaagatg tcagctttaa tataagacaa ggcgagactg 1741 ttgcatttgt tggagagtcg ggtgcaggaa agtccacgct tgcgaaactc atcgtgcatt 1801 attatgacgt cagcaaaggg cacattacga ttggcggtca ggatatcaca gacatgtcgc 1861 ttgaagcact gaatgagagg atatcttttg tgtctcagga gcagtttctg ttcaatacat 1921 ccattaaaga gaacatcaga atcggtaaac caggtgcaag tgatgaagaa gtgctggaag 1981 ctgcaggaaa ggcccagtgt ctcgatttca tctcccgttt tgaatatggc atggacacca 2041 tggccggaga cagtggaacg aagctgtctg gaggagagcg gcagaggatt tccatcgcac 2101 gtgcgattct caaggatgcc ccgattgttg ttcttgatga agccacggct ttcgcagatc 2161 cggagaatga ggagaagatg gaaaaggcga tttcagaggt tgtcaggaat aagaccctga 2221 tcgtactcgc gcaccgtatt tcctctataa aaaatgctga ttgcatttat gtgattgaga 2281 atgggaggat aacgggaaac ggcagacacg aagacctgct caggacgaat gagacctatt 2341 caaggctgtg gaagataagc caggagagca ttgcctggaa tgtgaaaaac agggaggtgg 2401 aaagatgact aagttcttta tcagaatatt gaagttctcc ggtccataca ggaacagggt 2461 gctgtctgcc gctgtctttg cattcataaa aggtgtatgt gtcatgatgc cgctttttct 2521 tggctttctg atgttctctt cattttatga cgggacgata acaatcagga gctgctggaa 2581 ttatctattg gcaatggtcg tgacagtcct gctcaatatt gcggcgacaa ggctttcaga 2641 ccagatgcag agtactgcag gatacaagat ttttgcagat aagcgcattg ctctgggcga 2701 aaagctgcgc aagcttccca tggggttctt tacggctggc aatatcggac gaataagttc 2761 tgtcctcagc tctgatatgg tctttgtgga agagaacgtg atgcagtcaa tagctgaaat 2821 gctttccaat gctttcactg ccatcgtaat caatcttttc atgttcttca ttgactggag 2881 aataggtctg ctcacggctg ttgtgagtct ccttgtggta atttcagcgc atttcatgaa 2941 cacttcaagc ctgaagcatg ccgcaataag acagaagcag aacgaaaagc ttaccgatgc 3001 cgtcatctcc catatagaag gaatcgggat catcaagagc tacaatctta caggggagaa 3061 atcaaaagag ctgacgaaaa atatcgaaga gacatgcagg gcagctctca gatatgaatc 3121 atcgcaggtg ccgtggatgg tattgcataa tgcgctttat acagcaggca ttactggtgt 3181 aatagcgttt gcattcatcc tctttgcttc aggcacgata acattgccat atcttatcgg 3241 agccatgctg ttcgcttttt ccatatttgt gcctctcaag acactctatg cagagtcttc 3301 gcgccttact gtcatggcca gctgtcttga caggattgaa gccctttttg aggagaggac 3361 tcttccagat gaaggcagga aacatataga agccgtgaca gaaagccctg agattgagtt 3421 caggcatgtt tcattttcct atgaggataa ggagaccatc catgatgtaa gctttattgc 3481 tttgaaagac accatgactg ctcttgtcgg accttccggc ggaggtaaga ctacacttgc 3541 aaaccttctt gcccgtttct gggatataaa taatggcagc atcatggtaa gaggcgttga 3601 cataagagat ctgcctttgt ctgaactcat gaaacagatc agcatggttt tccagcgtgt 3661 atatcttttt caggatacgg tctatgccaa tattgtgatg ggcaggccgg atgccacaaa 3721 agaggaggtg atcgaagcct gccaaaaggc cagatgctat gatttcatca tgtctcttcc 3781 tgacggattt gacacgatta taggtgaagg cggagcttct ctttccggag gggagaaaca 3841 gcgtatatct atagccagat gcattctcaa ggatgcgccg attgtaatac ttgatgaggc 3901 taccgcaagc attgatttgg ataatgaaag gtacattcag gaggcgatca gcgaacttgt 3961 gaagggcaag acgctcatcg taatcgc //