LOCUS JACMLZ010000332 3866 bp DNA linear ENV 10-FEB-2021 DEFINITION MAG: Hyphomicrobium sp. isolate ES-bin-56 ES-bin-56-contig-k141_5944597, whole genome shotgun sequence. ACCESSION JACMLZ010000332 JACMLZ010000000 VERSION JACMLZ010000332.1 DBLINK BioProject: PRJNA552582 BioSample: SAMN14819088 KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG. SOURCE Hyphomicrobium sp. (glacier metagenome) ORGANISM Hyphomicrobium sp. Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Hyphomicrobiaceae; Hyphomicrobium. REFERENCE 1 (bases 1 to 3866) AUTHORS Zeng,Y. TITLE Metagenome-assembled genomes from the Lille Firn glacier at the Villum Research Station in northeast Greenland JOURNAL Unpublished REFERENCE 2 (bases 1 to 3866) AUTHORS Zeng,Y. TITLE Direct Submission JOURNAL Submitted (07-AUG-2020) Department of Environmental Science, Aarhus University, Frederiksborgvej 399, Roskilde 4000, Denmark COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: MetaBAT v. 2 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 20x Sequencing Technology :: Illumina NovaSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 08/14/2020 14:53:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.12 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,153 CDSs (total) :: 3,120 Genes (coding) :: 3,082 CDSs (with protein) :: 3,082 Genes (RNA) :: 33 rRNAs :: 2 (16S) partial rRNAs :: 2 (16S) tRNAs :: 26 ncRNAs :: 5 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 16 of 38 Pseudo Genes (incomplete) :: 19 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 4 of 38 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3866 /organism="Hyphomicrobium sp." /mol_type="genomic DNA" /submitter_seqid="ES-bin-56-contig-k141_5944597" /isolate="ES-bin-56" /isolation_source="glacier surface soil" /db_xref="taxon:82" /environmental_sample /geo_loc_name="Greenland: the Little Firn glacier in the Knuths Fjeld" /lat_lon="81.567 N 16.358 W" /collection_date="2018-07-02" /metagenome_source="glacier metagenome" /note="metagenomic" gene <1..195 /locus_tag="H7Y62_07985" CDS <1..195 /locus_tag="H7Y62_07985" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010890145.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="QacE family quaternary ammonium compound efflux SMR transporter" /protein_id="MBC7831941.1" /translation="RGVGTTALKATEEFTRFIPSLIVVVGYGTAFFFLTLALRTIPVG IALIAVGVVVINVFSSSISH" gene complement(185..2062) /locus_tag="H7Y62_07990" CDS complement(185..2062) /locus_tag="H7Y62_07990" /inference="COORDINATES: protein motif:HMM:NF012257.1,HMM:NF013862.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="patatin-like phospholipase family protein" /protein_id="MBC7831942.1" /translation="MNYAGPTTIQSLQPMHSLLSKVGLPAVGIFSELSADERAALMSE LETRALKRGDVLVRQGDAADALYIVISGRFAVTLEGRRDPLTEIGPEQPIGEIAFLTG GTRTATVSAMRDSLVLRLGRNEFERISAKCPGIWRTLTTALSQRLAATTAHEPAAHDP RPRTIAVIRAGGSQIAEEFLYQLASVFSANANTLVLDGPRAAELLPKGIELDSSEATA ALNQLESSYDYLIFLADAELTPWSQKAIRHADLVLAVAADGADPTPNALEQLAAAFVN VEARRLVVVHERREPLSGTARWLRRRSLAMHHHVAMNDRSTIARLYRFINGTALGLVA CGGGALCAAHVGLYKALIESGFEFDIVGGTSAGAAMTGAFAMGKHPDDIDRGTHDIFV TNRAMQRYTWPRYSLLDHRHYDTQLSRYFGGVNIEDLWIPYFSVSTNLSSYELHRHDR GDLFDAIRASGSIPVLLPPVYTPEGEMLVDGCLLDNVPIRTMHELKNGPNVVVSFHIP ELERFDVDYSKLPSRAELISMTINPMMRSKLPAAPGLTTVLMRSLMAGRDDFNRQMKP GDVLFVPPIPANMGILDWGRHAELVRNAYWWGLEEVQRLKRARHPLIAAVEATAAAPS G" gene 2219..2629 /locus_tag="H7Y62_07995" CDS 2219..2629 /locus_tag="H7Y62_07995" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="MBC7831943.1" /translation="MRFVVFLLSLVAALTAVGTLFLGTMAIFTDNPHDPKIAWGYALI VDAGLMIALGVVAAFLVWVTPRIAEKALWLGTLAGLAAMAIYGTIIFIARDYPNAPDV RTAITSILLSGLVPAIAAASAALLTRWFVIPKMR" gene complement(2663..3094) /locus_tag="H7Y62_08000" CDS complement(2663..3094) /locus_tag="H7Y62_08000" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="MBC7831944.1" /translation="MAMTWDLTDIPAVDAADLAAAMRSLIEDGRGLVLLNGASEADLD TARAALQSRHHAEPQRALAAFVRFRHLVEVFGARRLKDLMLDNGYALMAPAIAIASSL RLNGHRGFNPQRFLLSLQEAMTANVVALEVRPVAEAQRLAA" gene complement(3119..3337) /locus_tag="H7Y62_08005" CDS complement(3119..3337) /locus_tag="H7Y62_08005" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="MBC7831945.1" /translation="MHGRITKFSAKVGFGVIEAEDGAKYRFAKDQVVNLNGKLVGHSV DFLVYARRPADIFLMTGTPWTAFGDGSH" gene 3619..>3866 /locus_tag="H7Y62_08010" CDS 3619..>3866 /locus_tag="H7Y62_08010" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="MBC7831946.1" /translation="MTTVWRRALFPALAVLGAIALQSTTAFANCDWYVKTALEQQQRN LKLKCGLSGGEWSADKGAHATWCASVSPDASKATAQKR" BASE COUNT 630 a 1176 c 1363 g 697 t ORIGIN 1 cgaggtgtcg gcaccaccgc gctgaaggcc accgaagaat tcacccggtt cattccgtcg 61 ctgatcgtcg tcgtcggcta tggcacggca ttcttcttcc tcacgctggc gctgcgcacc 121 atccccgtcg gcatcgcctt gatcgccgtc ggcgtggtgg tgatcaacgt cttttcatcg 181 agcatcagcc actaggcgcg gcggccgtgg cctcgacggc ggcgatgagc gggtggcgcg 241 cgcgtttgag gcgctgcacc tcctcgagcc cccaccagta ggcgttgcgc accagctccg 301 cgtgccggcc ccagtcgaga atgcccatgt tggcgggaat gggcggcacg aacagcacgt 361 cgcccggctt catctggcga ttgaagtcgt cgcggccggc catcagcgag cgcatcagca 421 cggtagtgag gccgggcgcg gctggcagct tgcttcgcat catcgggttg atggtcatgc 481 tgatcagctc ggcgcgcgag ggcagcttgc tgtagtcgac gtcgaaacgc tccaactccg 541 ggatgtggaa gctgacgacc acgttcggcc cgttcttcag ctcgtgcatg gtgcggatgg 601 gcacattgtc gagcaggcag ccgtcgacca gcatctcgcc ttccggcgta tagacgggtg 661 gcagcagcac ggggatggag cccgaggcgc ggatggcgtc gaagaggtcg ccacggtcat 721 gccggtgcag ctcgtagctc gacaggttgg tcgacaccga gaagtacggg atccacagat 781 cctcgatgtt gacgccgccg aaataacgcg acagctgcgt gtcgtagtgg cggtggtcga 841 gcagcgagta gcgcggccac gtgtagcgct gcatggcgcg gttggtgacg aagatgtcgt 901 gcgtgccgcg gtcgatgtca tccgggtgct tgcccatggc gaaggcgcct gtcatcgccg 961 cgccggccga ggtgccgccg acgatgtcga actcgaagcc gctttcgatc agcgctttgt 1021 aaagtccgac gtgcgccgcg cacaacgcgc cgccgccgca ggcgacgagg cccaaggccg 1081 tgccgttgat gaagcggtag aggcgggcga ttgtgctgcg atcgttcatc gccacgtgat 1141 ggtgcatggc gaggctgcgc cggcgcagcc agcgagccgt tcccgacagc ggctcgcgtc 1201 gctcatgcac gacgacgagg cggcgcgcct cgacgttgac gaaggctgcg gcgagctgct 1261 cgagcgcgtt tggcgtcggg tcggcgccgt cggcggcgac ggcgagcacc agatcggcgt 1321 ggcggatggc tttctgcgac cacggcgtca gctcggcatc ggcgaggaag atcaaatagt 1381 cgtacgagct ctcgagctgg ttgagggcgg ccgtcgcctc ggagctgtcg agctctatgc 1441 ccttgggcaa caactcggcg gcgcggggac catccagcac cagcgtgttg gcgttggcgg 1501 agaacacgct ggcgagctgg taaaggaact cctcggctat ctgcgagccg ccggcgcgaa 1561 tgacggcgat ggtgcgcgga cgcggatcgt gtgcggccgg ctcatgggcg gtggtagctg 1621 ccagccgttg cgaaagggcg gtcgtcagcg tgcgccagat gccggggcac ttggccgata 1681 tgcgctcgaa ctcgttacgg ccgaggcgca gcacgaggct gtcgcgcatg gcagacacgg 1741 tggcggtgcg cgtgccgccg gtgaggaagg cgatctcgcc gataggctgc tccggcccga 1801 tctcggtgag cgggtcgcgg cgtccctcca aggtcacggc aaagcggccg gatatgacga 1861 tatagagcgc atcggcggca tcgccctggc gcacgagcac atcgccccgc tttaaggcac 1921 gcgtctccag ctcgctcatc agggcggcgc gctcgtcggc gctcagctcg gagaatattc 1981 ccacggcggg caggccgact ttggagagaa gcgaatgcat cggttgcagg ctctgaatgg 2041 tggtcgggcc agcatagttc actcggcaag ctttggggtg gcaatcggcg ggattggcga 2101 acgaaccgcg catgccgacg tgaggccacg gcaactctgg ccgccgcttc gatcatcggc 2161 taagcgtagg aacgctctaa gacggcgcga tgcaggtcac agaagtttcg ggggggtgat 2221 gcgctttgtc gtttttctac tcagtctcgt ggcggcgctc accgccgtcg gtacgttgtt 2281 cctgggcacg atggcgatct ttaccgacaa cccgcacgat ccgaagatcg cgtggggtta 2341 cgcgctgatc gtggatgccg gtctgatgat cgcattgggt gtcgttgcgg cctttctcgt 2401 ctgggtcaca ccgcggattg ccgagaaggc gttgtggctt ggtaccctcg ccgggttggc 2461 cgccatggcc atctacggca ccatcatatt catcgcgcga gactatccga acgcgcccga 2521 tgtgcggacc gcgatcacgt cgatcctgct gagcgggctc gtgccagcca ttgctgccgc 2581 ctcggcggcg ctgttgacgc gctggttcgt cattccgaag atgcgctgac agcgtcctgc 2641 cgaaactgct gaccttcact ctttaggcgg ccaggcgctg cgcttcggcg acggggcgga 2701 cttccaaggc cacgacgttg gcggtcatcg cttcctgcag cgacaggaga aagcgctgcg 2761 gattaaagcc gcgatggccg ttgaggcgca gcgaagaggc aatcgcgatc gccggggcca 2821 tcagggcgta gccgttgtcg agcatcagat ccttgaggcg gcgggcgccg aacacttcca 2881 cgagatggcg gaagcggacg aaggcggcca gcgcacgctg cggctcggcg tgatgacggc 2941 tctgcagggc agcgcgcgct gtgtcgagat cggcttcgct ggcgccgttg agcagcacca 3001 atccgcggcc gtcctctatg agagagcgca tggcggcggc gaggtcggcc gcgtcgacgg 3061 ccggaatgtc ggtgaggtcc caggtcatgg ccattgtcgt atgctccagt tcgaatggtt 3121 agtggctgcc gtcgccgaag gcggtccagg gcgtgccggt cattaaaaag atgtccgcgg 3181 ggcgacgggc gtagacgagg aagtcgacgc tgtggccgac gagcttgccg ttgaggttga 3241 cgacttggtc cttggcaaaa cggtacttgg cgccgtcctc ggcctcgatg acgccgaagc 3301 cgacctttgc gctgaacttc gtgatccgac cgtgcacgac actctccttt tgactgggcg 3361 gcctttgtga ccgccgatgg gctgagagtg tcccagggcg gcgcccggcg ctgttccggg 3421 agttacaggc ttttgaagct tttgcgccga ggggctgcgg ctgccgagaa agctcgccgg 3481 tgccgcattt gcgatgtatc aaacaggctt ccggcggggg aaactgccgg ctcggggcag 3541 ccatccattc agtctgggtt catggccgcg ccgctaggtt ccgggagtga tccgggtaag 3601 gacccttgag gtgagacgat gacgaccgtt tggcggcgcg cactattccc ggcactcgcc 3661 gtcctcggcg ccattgcact tcaatcgacg accgccttcg ccaactgcga ctggtacgtg 3721 aagaccgccc tcgagcagca gcagcgcaac ctcaagctca agtgcggcct gtcggggggc 3781 gaatggtccg ccgacaaggg tgcgcacgcg acgtggtgcg cttccgtcag ccccgatgcc 3841 tcgaaggcca ccgcgcagaa gcgcga //