LOCUS JABFYB010000196 2379 bp DNA linear ENV 18-JUN-2020 DEFINITION MAG: Hamadaea sp. isolate Bin8.36 NODE_34640_length_2379_cov_11.648778, whole genome shotgun sequence. ACCESSION JABFYB010000196 JABFYB010000000 VERSION JABFYB010000196.1 DBLINK BioProject: PRJNA622594 BioSample: SAMN14571749 KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG. SOURCE Hamadaea sp. (soil metagenome) ORGANISM Hamadaea sp. Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Hamadaea. REFERENCE 1 (bases 1 to 2379) AUTHORS Yu,J. TITLE DNA-SIP metagenomic assembled genomes JOURNAL Unpublished REFERENCE 2 (bases 1 to 2379) AUTHORS Yu,J. TITLE Direct Submission JOURNAL Submitted (14-APR-2020) School of Life Sciences, Arizona State University, 427 E Tyler Mall #320, Tempe, AZ 85281, USA COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.11.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 34.44x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/15/2020 02:16:51 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 7,028 CDSs (total) :: 6,989 Genes (coding) :: 6,913 CDSs (with protein) :: 6,913 Genes (RNA) :: 39 rRNAs :: 1 (16S) partial rRNAs :: 1 (16S) tRNAs :: 35 ncRNAs :: 3 Pseudo Genes (total) :: 76 CDSs (without protein) :: 76 Pseudo Genes (ambiguous residues) :: 0 of 76 Pseudo Genes (frameshifted) :: 6 of 76 Pseudo Genes (incomplete) :: 72 of 76 Pseudo Genes (internal stop) :: 3 of 76 Pseudo Genes (multiple problems) :: 5 of 76 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2379 /organism="Hamadaea sp." /mol_type="genomic DNA" /submitter_seqid="NODE_34640_length_2379_cov_11.648778" /isolate="Bin8.36" /isolation_source="biochar-amended oxisol soil plot 8" /db_xref="taxon:2024425" /environmental_sample /geo_loc_name="USA: Poamoho, Hawaii" /lat_lon="21.5416 N 158.0875 W" /collection_date="2015-11-30" /metagenome_source="soil metagenome" /note="metagenomic" gene complement(<1..87) /gene="rpsO" /locus_tag="HOV78_07975" CDS complement(<1..87) /gene="rpsO" /locus_tag="HOV78_07975" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010079122.1" /note="primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="30S ribosomal protein S15" /protein_id="NUO56586.1" /translation="MALDAAVKTQIMQEYATTEGDTGSPEVQV" gene complement(324..1253) /locus_tag="HOV78_07980" CDS complement(324..1253) /locus_tag="HOV78_07980" /EC_number="2.7.1.26" /EC_number="2.7.7.2" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007075298.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="bifunctional riboflavin kinase/FAD synthetase" /protein_id="NUO56587.1" /translation="MQRWRGAAQAPRGWGRSVVTIGVFDGVHRGHQATIGYAVKRARE LGEASVVVTFDPHPSEVVRPGSHPAVLTTQERKAELIEELGVDALCVEPFTREFSKLP PEEFVHDVLVEHLHAAEVVVGENFRFGHKAAGDVELLTRLGRRFGFTTTAAPLLTDDS TVFSSTYVRSCVAAGDVAAAAAALGRPHRLEGVVVRGDQRGRQLGFPTANLLCGPHAA IPADGVYAAWLLRGGKQLPAAVSIGTNPTFAGTERRVEAFVLDFSGDLYGERVALDFV SHLRPTVRFDTLEGLVAAITDDVSRTRAVLGLS" gene complement(1267..>2379) /locus_tag="HOV78_07985" CDS complement(1267..>2379) /locus_tag="HOV78_07985" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NUO56588.1" /translation="LGRLAVAALTVAAIGVQGAMLARWRVDLDGERARESSAPCPGHW LVACGGLTVVVVVAAGVVLVNPLGVPVLSTSSTVKSTEILGQYAVTADGEPEVGIGGS SRPLAWDSRRALFDGGTALVGVAYPGNGPVELTVCDGADCVPARAQLDRPGFYWELWV ARPLPDGGLIVVAPVIERGMLAGTAKLVAWICPNRTCESSRRVEMADVNYNPPQDLPF AVGVGPEGAPVVAYGTTGQTSLTVVRCADRACRHASTEHGDVAALVDGEWPGLVGLGF DRDGRVVAVLAGRPHTTPAGLHIRVGRASRPRVISVTCGDDSCERRTTRAWNEIAADG GDLRAWPVPMPDGHLAILQEDSGGARLITCEHHCEG" BASE COUNT 364 a 886 c 810 g 319 t ORIGIN 1 gacctggacc tccggcgaac cggtgtcacc ctcggtcgtc gcgtactcct gcatgatctg 61 agtcttgact gcagcgtcga gcgccatttt ctcccatttc gcgtgtgagc cgacggctca 121 tggatactcc cggctccgca cccgcggcgt cgggcaggcg tacgcggagc ctcgtcaagg 181 ttaccttacg gagtcgatca tgccgccgag ccactggcgt acgccaagat cattgcgtca 241 gccatgctgc ttcaacggac atttcgccgc gtgaagcagc atggctgacg caatgatcac 301 gctcagcgcg agcgggagcg ggctcagctt aggccgagca cggcgcgcgt acgcgagacg 361 tcgtcggtga tcgcggcgac cagcccttcc aacgtgtcga accgcacagt cggccgcaga 421 tgcgacacga agtcgagggc gacccgttcg ccgtagaggt cgccggagaa gtccaggacg 481 aaggcttcga cccggcgctc ggtcccggcg aaggtcgggt tggtgccgat cgacacggcc 541 gcgggcagct gcttgccgcc gcggaggagc caggcggcgt acaccccgtc ggccgggatg 601 gccgcgtgcg gaccgcacag caggttggcg gtcgggaagc cgagctggcg tccacgctgg 661 tcgccccgga ccacgacgcc ctccaaccgg tgcggccggc cgagcgcggc ggcggctgcg 721 gcgacgtctc cggccgccac gcacgaccgg acgtaggtcg acgagaacac tgtcgagtcg 781 tcggtcagca gtggcgcggc cgtcgtagtg aagccgaacc ggcggcccag ccgggtcagc 841 agctccacgt ccccggcggc cttgtggccg aaccggaagt tctcccccac cacgacctcg 901 gccgcgtgca ggtgctcgac caggacgtcg tgcacgaact cctcgggcgg cagtttggag 961 aactcgcggg tgaacggctc cacgcagagc gcgtcgacgc ccagctcctc gatcagctcg 1021 gccttgcgct cctgagtcgt cagcaccgcc ggatgtgagc ccggccggac gacctcggac 1081 gggtgcgggt cgaaggtcac gaccacgctc gcctcgccca gttcacgggc gcgcttcacc 1141 gcgtagccga tggtggcctg atggccccgg tgcactccgt cgaacacgcc gatcgtgacg 1201 accgagcgtc cccaccctcg cggcgcctgc gccgcgcccc tccaccgctg cataggccca 1261 aaactatcaa ccttcacagt ggtgttcaca cgtgatcagg cgcgcacccc cggagtcctc 1321 ctgcaggatc gcgaggtgcc cgtcgggcat cggcaccggc cacgcgcgca ggtcaccgcc 1381 gtcggcggcg atctcgttcc aggcccgagt ggtacgccgt tcgcagctgt cgtcgccgca 1441 ggtgacgctg atcacccggg gccgggacgc gcgcccgacc cggatgtgca gccccgctgg 1501 agtcgtgtgg ggccgaccgg ccagcacggc gaccacgcgc ccgtcccggt cgaagccgag 1561 cccgaccagc cccggccact cgccgtcgac caatgccgcg acgtccccat gctccgtcga 1621 ggcgtgccgg caggcgcggt cggcgcagcg gacgacggtc aggctggtct gaccggtcgt 1681 cccgtacgcc accacgggcg cgccctcggg gccgacgccg acggcgaacg ggagatcctg 1741 gggcgggttg tagttgacgt cggccatctc gacacgccgc gacgactcgc aggtccggtt 1801 ggggcagatc caggcgacga gtttggccgt cccggcgagc atcccgcgct cgatcaccgg 1861 ggcgacgacg atcagcccac cgtcgggcag cggccgggcc acccacagct cccagtagaa 1921 cccgggccgg tccagctgcg cccgcgccgg tacgcagtcc gccccgtcac agacggtgag 1981 ttcgaccggt ccgttgcccg ggtaggccac cccgaccaac gccgtcccgc cgtcgaacag 2041 cgcccggcgt gagtcccagg ccagcggccg gctcgatcca ccgatgccca cctcgggttc 2101 accgtcggcg gtgacggcgt actgcccgag gatctcggtg gacttgacgg tggaggaggt 2161 gctcaacacc ggtacgccca gcgggttcac gaggacgaca ccggccgcca cgacgacgac 2221 cacggtcagc ccaccgcaag ccaccagcca gtgcccgggg cagggcgccg acgattcccg 2281 cgcccgttcg ccgtcgaggt cgactcgcca gcgggccagc atcgccccct gtacgccgat 2341 cgccgccacg gtcagggccg ccaccgcgag ccggccgag //