LOCUS JABDRM010000062 4097 bp DNA linear ENV 11-MAY-2020 DEFINITION MAG: Lysobacterales bacterium isolate Site_C29 k127_360049, whole genome shotgun sequence. ACCESSION JABDRM010000062 JABDRM010000000 VERSION JABDRM010000062.1 DBLINK BioProject: PRJNA623061 BioSample: SAMN14538102 KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG. SOURCE Lysobacterales bacterium (beach sand metagenome) ORGANISM Lysobacterales bacterium Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales. REFERENCE 1 (bases 1 to 4097) AUTHORS Chen,Y.-J., Leung,P.M., Cook,P.L.M., Wong,W.W., Kessler,A.J. and Greening,C. TITLE Hydrodynamic disturbance controls microbial community assembly and biogeochemical processes in coastal sediments JOURNAL Unpublished REFERENCE 2 (bases 1 to 4097) AUTHORS Chen,Y.-J., Leung,P.M., Cook,P.L.M., Wong,W.W., Kessler,A.J. and Greening,C. TITLE Direct Submission JOURNAL Submitted (07-APR-2020) Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, Melbourne 3168, Australia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 2020 Assembly Method :: Megahit v. 1.2.9 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 9.307619901556274x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/02/2020 00:52:34 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 2,813 CDSs (total) :: 2,782 Genes (coding) :: 2,764 CDSs (with protein) :: 2,764 Genes (RNA) :: 31 rRNAs :: 1 (16S) partial rRNAs :: 1 (16S) tRNAs :: 27 ncRNAs :: 3 Pseudo Genes (total) :: 18 CDSs (without protein) :: 18 Pseudo Genes (ambiguous residues) :: 0 of 18 Pseudo Genes (frameshifted) :: 6 of 18 Pseudo Genes (incomplete) :: 12 of 18 Pseudo Genes (internal stop) :: 1 of 18 Pseudo Genes (multiple problems) :: 1 of 18 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4097 /organism="Lysobacterales bacterium" /mol_type="genomic DNA" /submitter_seqid="k127_360049" /isolate="Site_C29" /isolation_source="Beach sand" /db_xref="taxon:2006849" /environmental_sample /geo_loc_name="Australia: Middle Park Beach, Port Phillip Bay site C" /lat_lon="37.863 S 144.971 E" /collection_date="2018" /metagenome_source="beach sand metagenome" /note="metagenomic" gene <1..412 /locus_tag="HKP21_01470" CDS <1..412 /locus_tag="HKP21_01470" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005342010.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=2 /transl_table=11 /product="hypothetical protein" /protein_id="NNK03193.1" /translation="GLLSYFDTEIGGQRESRVARDTTQYGENLFLVKNGRILTPPASA SILSGITRDTAFSLAADLGIEVTEQTLSREQLYGADEAFFTGTAVEVTPIRQIDHITI GNGGCGPLTKSIQSAFFGLFNGETEDKRNWLSHV" gene complement(920..1459) /locus_tag="HKP21_01475" CDS complement(920..1459) /locus_tag="HKP21_01475" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_008293096.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DsrE family protein" /protein_id="NNK03194.1" /translation="MFFRNGLIVLILLSPVSLLAAEARSGPIISNFGPVYEVPEGAWN LEKGKAYKVSMDVSATADFSGDLNRRIESAARFLNMHARNGIEMEDIDFAIVVHGSAG KDLLKDAAYEARFDEVNPNTPMLSDLAGAGVKVYLCGQTAAHRGLAAEDLHPAVTMAL SAMTAHVRLQSEGYTLIPF" gene complement(1562..2377) /locus_tag="HKP21_01480" CDS complement(1562..2377) /locus_tag="HKP21_01480" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_018973200.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="NYN domain-containing protein" /protein_id="NNK03195.1" /translation="MTQKTKNLALYCDFENIALGVRDAQYARFDIEEVLERLLVKGNI VVKKAYCDWDRYKDFKADMHEASFELIEIPHVRQSGKNSADIRMVVDALDLCYTKSHV DTFVVISGDSDFSPLVSKLRENNKIVIGVGVKESTSNLLIANCDEFIYYDDIVRQSER RKPKKKRTNGKRENGDDSPAATGKGQRRAQQAFEWVLETLDDLFSERDPEEKVWGSMV KQTLKRRKPGFNERYHGFRSFSELLEQMEEQKMVVLEHDKKSGGYIVSDYVGT" gene 2624..3619 /locus_tag="HKP21_01485" CDS 2624..3619 /locus_tag="HKP21_01485" /EC_number="2.7.11.1" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_017454023.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="serine/threonine protein kinase" /protein_id="NNK03196.1" /translation="MNQTNDVLTPYYRLDPETIIKLVESTGLLCDGRLLALNSYENRV YQVGIEDAEPLVMKVYRPGRWTNEQILEEHVFAREIAAAEIPLVPPLKINGQTLHEES GFRFALFKRRGGHAPELDLKETRVWLGRFLGRLHAVGTEKPFHTRPALSIDSFGRVPV RELLEGQWLPPHLETAFASLAEHLLESIEACFERAGAFKPIRLHGDCHPGNILWREGP FFVDLDDCRSGPAVQDLWMLLSGENHEMAQQMKDVLDGYTQFHHFNLRELNLVEALRT LRMLHHAAWLAKRWQDPAFPMAFPWFGEPRYWEDLVLGLREQLGRMQEEPIQLPL" gene 3798..4004 /locus_tag="HKP21_01490" CDS 3798..4004 /locus_tag="HKP21_01490" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NNK03197.1" /translation="MHKQTLHKELYDPFAHYTRGVLLFDEEKYQFIAYRMPYVGLDKK TWKTEQAFQADYRKMVARKYSITD" BASE COUNT 980 a 1087 c 1063 g 967 t ORIGIN 1 gggtttgctc agttacttcg ataccgagat cggcggccag cgagaaagcc gtgtcgcgcg 61 tgataccact caatatggtg aaaacctgtt cctggtcaag aacggcagga ttctgacgcc 121 gccggcttca gcttccatat tgagtggtat cacgcgcgac acggctttct cgctggccgc 181 cgatctcggt atcgaagtaa ctgagcaaac cctgtcccgt gaacagctct acggcgccga 241 tgaggccttt ttcaccggca ctgccgtgga agtgacaccg attcgccaga ttgatcacat 301 caccatcggc aacggtggct gtggtccgct gaccaagagc atccaatcag cgttttttgg 361 ccttttcaat ggcgagacgg aagataaacg taattggctg agccacgtct gacacgaatg 421 acgctttccg actgacaata tttgtcagtt tctcgacaca aagcggcaaa ctgccaacat 481 tccaaacctt agtgcaagat acctgttttc aggtatcttg ctgttatatc tcaatatttc 541 aaacaaaaca cctccttggc atgaactttg ctttataagg ggggaagaaa cctgttttac 601 aagaatcttc aattccagaa ccattgaatt atggacatgg aagtttgtca ccacctgtga 661 cgtagcagtg ccaacgactg tttacggaag ggctgtttcc aacggcggct accgaaggcg 721 ttagatccag ggaattgggt cgcagcagga gaagttatga gcttggggga caagcaaggg 781 gtgaccagga agttgatggg ggttaactga atggtcaaaa caggggatcg tgggccagag 841 ggtgcatacc agaagcccac ttaaaaaaaa gacccgttta atacgggtct ttttttgcct 901 cgagaaaagc ggccgcggat taaaacggga tcagcgtata accttctgac tgcaaacgta 961 cgtgcgctgt catcgctgaa agcgccatgg taacggcagg gtgcaggtcc tcagcagcca 1021 gcccgcggtg tgccgcagtc tgaccgcaaa gatagacttt gacgcctgcc ccagccaggt 1081 cgctcaacat gggggtattg gggtttacct cgtcaaagcg cgcctcataa gcagcgtctt 1141 tcaacagatc cttgcctgct gaaccgtgga ctacgattgc aaaatcaatg tcttccatct 1201 cgataccgtt acgggcatgc atgttcagaa agcgggcggc agattcaatt cggcgattta 1261 aatcaccgct gaagtcagct gtcgcagaga catccatcga aaccttgtag gccttgccct 1321 tttcaaggtt ccacgcacct tcaggcactt cgtaaaccgg cccaaagttg ctgatgatcg 1381 ggccgctgcg ggcctctgcc gccaacaggc tcaccggtga cagcaaaatc agtacaatca 1441 acccatttct gaaaaacatc aattttctcc actgttgtta tctgctgcac gaaaaagggc 1501 cgggttcatt gagcccaatg aacccggccc cttgttccaa tgaatctagt gtgacactac 1561 actaggtgcc tacataatcc gaaacgatgt atccacccga ctttttatca tgctccaaca 1621 cgaccatttt ttgctcttcc atctgctcga gcagttcact gaatgaacgg aagccatgat 1681 agcgctcgtt gaagcccggc ttacgccttt taagcgtctg cttgaccatt gagccccaga 1741 ctttttcctc tggatcgcgc tcactgaaca ggtcatccag ggtctccagc acccactcaa 1801 acgcctgttg ggcacgacgt tggcccttgc cggtagcggc ggggctgtca tcaccatttt 1861 cgcgcttgcc attggtcctt ttcttttttg gtttgcggcg ttcggattgg cggacgatat 1921 cgtcgtagta aatgaactca tcacaattgg cgatcagcaa gttggaggtc gattccttga 1981 caccgacacc gatgacaatt ttgttgtttt cgcgcagctt ggacacgagc ggtgaaaagt 2041 cggagtctcc cgatatgacc acgaaagtat cgacgtggga tttggtgtaa caaaggtcaa 2101 gcgcatccac caccatgcga atgtcggcgg agttcttacc cgactggcgc acatggggaa 2161 tttcgatcag ctcaaaagaa gcttcgtgca tgtcggcttt gaaatccttg taacgatccc 2221 agtcacaata agctttcttg actacaatgt tgcctttaac cagcaggcgt tcgagaactt 2281 cttcaatatc aaagcgcgcg tattgcgcgt cgcggacgcc tagtgcgatg ttctcgaaat 2341 cgcaatacag cgccagattc ttggtctttt gggtcatgga ggataaaacc ttggcttgga 2401 cgacttattc tactgcaaac aactgttttc gacagagact tttttacact gtcggtcatt 2461 tttatttttt tagccatcct ggggttgcgc atggttggta aagggaatcg aggtcttttt 2521 gcgtcataaa aatggcccct gcctgttgaa gtttgaccct tttacacggt gtagaggcta 2581 tcctagggac gccagaaaaa ggtcaaccag gaaaaacgcc actatgaacc agacaaatga 2641 tgtcctgacg ccctactacc gccttgaccc ggagaccatt atcaagctgg ttgagtccac 2701 gggactgctt tgtgacgggc gcctcctggc cctcaacagt tatgaaaacc gtgtctacca 2761 ggtcggtatc gaagatgcgg aaccactggt gatgaaagtt taccggccgg gccgctggac 2821 gaatgagcag atactggagg agcatgtctt cgcccgggaa atcgcagctg cggaaatacc 2881 cctcgtgcca ccgctgaaaa ttaacgggca gacccttcac gaagagagcg gcttcagatt 2941 tgccctgttc aaaaggcgtg gtggtcatgc acctgaactg gacctgaaag agacacgcgt 3001 atggcttggc cgcttcctgg gccggctgca tgcggtaggc accgaaaagc ctttccatac 3061 ccggccggct ctgagcattg acagtttcgg ccgtgtaccc gtcagggagc tgcttgaggg 3121 ccaatggctg ccgccgcacc tggaaaccgc atttgcaagc ctggctgaac acctgctgga 3181 atcgattgaa gcctgctttg aaagggcggg tgccttcaaa cccatccggc tccacggcga 3241 ctgtcatccc ggtaacatcc tgtggcgcga aggaccgttt ttcgtcgacc tcgacgattg 3301 ccgcagcggc cctgcggtgc aggatttgtg gatgttgctt tccggtgaaa atcatgaaat 3361 ggcccagcag atgaaggacg tgctggacgg ctatacgcaa ttccaccatt tcaacctgcg 3421 tgaactgaac ctcgttgaag ccctgcgtac actgcgcatg ctccaccacg ccgcctggct 3481 ggccaaacgc tggcaggatc ctgcgtttcc aatggcattc ccctggttcg gtgagccccg 3541 ttactgggaa gacctggtct tggggctaag agagcaactg ggtcgaatgc aggaggaacc 3601 catacaactg cccctgtgaa gccgcacgcc tgaagtggcg aacttaagct gcggttaagg 3661 ttactggcgt taatatagag agttgcacct gccaacaccg gcctggttac aggagtcttg 3721 acccgttagc agagacagct ttgtcaagct ttcaggccat gggatggccg gtgcgatttg 3781 cccggcggat catcaccatg cacaagcaaa cactgcacaa ggaactctac gacccatttg 3841 cccattatac gcggggcgta ttgctgtttg acgaggaaaa ataccaattt atcgcctacc 3901 ggatgcctta cgtggggctt gataagaaaa cctggaaaac agagcaggca ttccaggccg 3961 attaccgaaa aatggttgcc aggaaatatt ccatcaccga ctgaccaaaa tcaactgcat 4021 tgagcggccg tcctgtgacc tggtttttca gtgcatcgcg gtcaggcttc cacaaccctt 4081 tctattacag tcaggag //