LOCUS JABDMF010000317 3150 bp DNA linear ENV 09-MAY-2020 DEFINITION Gammaproteobacteria bacterium isolate SS_bin_94 k127_593592, whole genome shotgun sequence. ACCESSION JABDMF010000317 JABDMF010000000 VERSION JABDMF010000317.1 DBLINK BioProject: PRJNA609151 BioSample: SAMN14260556 KEYWORDS WGS. SOURCE Gammaproteobacteria bacterium (beach sand metagenome) ORGANISM Gammaproteobacteria bacterium Bacteria; Proteobacteria; Gammaproteobacteria. REFERENCE 1 (bases 1 to 3150) AUTHORS Chen,Y.-J., Leung,P.M., Bay,S.K., Hugenholtz,P., Kessler,A.J., Shelley,G., Waite,D.W., Cook,P.L. and Greening,C. TITLE Metabolic flexibility allows generalist bacteria to become dominant in a frequently disturbed ecosystem JOURNAL Unpublished REFERENCE 2 (bases 1 to 3150) AUTHORS Chen,Y.-J., Leung,P.M., Bay,S.K., Hugenholtz,P., Kessler,A.J., Shelley,G., Waite,D.W., Cook,P.L. and Greening,C. TITLE Direct Submission JOURNAL Submitted (06-MAR-2020) Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, Melbourne 3168, Australia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 2020 Assembly Method :: Megahit v. 1.2.9 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 8.247133404846242x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/30/2020 17:36:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 2,651 CDSs (total) :: 2,631 Genes (coding) :: 2,599 CDSs (with protein) :: 2,599 Genes (RNA) :: 20 tRNAs :: 17 ncRNAs :: 3 Pseudo Genes (total) :: 32 CDSs (without protein) :: 32 Pseudo Genes (ambiguous residues) :: 0 of 32 Pseudo Genes (frameshifted) :: 10 of 32 Pseudo Genes (incomplete) :: 16 of 32 Pseudo Genes (internal stop) :: 12 of 32 Pseudo Genes (multiple problems) :: 6 of 32 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3150 /organism="Gammaproteobacteria bacterium" /mol_type="genomic DNA" /submitter_seqid="k127_593592" /isolate="SS_bin_94" /isolation_source="Beach sand" /db_xref="taxon:1913989" /environmental_sample /geo_loc_name="Australia: Middle Park Beach, Port Phillip Bay" /lat_lon="37.85 S 144.95 E" /collection_date="2017-01-19" /metagenome_source="beach sand metagenome" /note="metagenomic" gene complement(93..848) /locus_tag="HKN85_07790" CDS complement(93..848) /locus_tag="HKN85_07790" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005481692.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NND00067.1" /translation="MAVIEIKNMSKVYGFGEATTIAVDAVDLTIEKGEFVAVMGPSGS GKSTLMNLIGLLDTPSHGEYKLSGKNVAGLRAGARAKIRRTKIGFIFQSFNLLARMNV IDNVSLPLMYSRVGITERLKKASKILTRLDMQEREYYRPNQLSGGQMQRVAIARALAN SPSIILADEPTGNLDSKNGEKIMEILKELHQEGNTLIMVTHDPKMSEFADRVINMQDG RIVSDKPVKKKKAKKKKTKKSEKSEDEETGDKK" gene 969..1943 /locus_tag="HKN85_07795" /pseudo CDS 969..1943 /locus_tag="HKN85_07795" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_018351241.1" /note="internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="ATP-binding cassette domain-containing protein" gene 1940..2734 /locus_tag="HKN85_07800" CDS 1940..2734 /locus_tag="HKN85_07800" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_020516146.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ABC transporter permease" /protein_id="NND00068.1" /translation="MNDAASVGFFKQMTYAVTDTWEITKRNVRRNFRLPQLLVFSSIQ PVMFLLLFNFVFGGAVTQGSGDTYINFLLPGILIQTALFGAIQTGVGLAEDMQKGVVD RFRSLPMSRVAHMAGRVTADALRNLIVLGLMTFVGVLLGFDFQNGLILAITGYFLAIF FGFAFSWVASLFGLITKDSETAQVLGFLWTFPLVFASSVFVPPASMPGWLQVFANNQP VTHAVNALRSLTQGGDMDAVWKTLLWVSAILIIFVPVSVKRYRNTS" gene 2834..>3150 /locus_tag="HKN85_07805" CDS 2834..>3150 /locus_tag="HKN85_07805" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NND00069.1" /translation="MPTIIASDADVILQPFIILLETFLQSVWSMTWWFYTTTPGLESI TDWFFDVQPSSVLVWIALLHFVPSLWCTSIAEHRMFSHSSLQIISPTFYGLHYLFSWY YHMG" BASE COUNT 701 a 733 c 829 g 887 t ORIGIN 1 gattacagcc atcatggtca agaacgccct cagcttagag gtacggatag cgttccaggc 61 catcttgaag ttgaggacca tcatagagaa tctcattttt tgtctccagt ttcttcatcc 121 tcagacttct ctgatttctt tgtctttttt ttctttgctt tctttttctt tactggttta 181 tcgctgacta tgcggccgtc ctgcatgttg atcaccctat cagcgaattc actcattttt 241 gggtcgtgcg tcaccattat caatgtgttg ccttcttggt ggagctcttt gagaatttcc 301 atgatcttct cgccgttttt gctatcgagg tttccggttg gctcgtcggc caagatgata 361 gaaggggagt tagcaagggc gcgcgcaatt gccactcgtt gcatttggcc gcccgagagt 421 tggttagggc ggtaatattc acgctcttgc atatcgagcc tggtcaaaat tttcgatgct 481 ttcttgaggc gctcggtgat accaacacgg gagtacatta ggggtaggga tacgttatcg 541 ataacattca ttcgcgccaa gagattaaac gattgaaaaa taaagccaat cttggtgcgt 601 cggattttag cgcgcgcacc ggcacggaga ccagccacgt tcttgccgct tagcttgtat 661 tcaccgtgtg agggcgtatc gagtaggccg ataaggttca ttagagtcga tttacctgag 721 ccgctgggac ccataacagc aacgaattcg cctttttcga tcgttaaatc aactgcatca 781 accgcaattg ttgtcgcttc gccaaagcca tagaccttgc tcatattctt gatttcgata 841 accgccatac ttgtctgtat tgtaatcgaa tcctcgagac gaatccaaac ttttgtgtct 901 gggtataaac aaatgattta ttcttggcac atggtgctgt agccttagat aacaatgaga 961 ggttttttgt ggcagttatc gaagtcgaaa acgtaaagca atattttaaa gacatcaaag 1021 ctgtagacgg ggtgtcactc gaggttaagg cgggcacagt ctatgggtta cttgggccaa 1081 acggtgcggg caaaacaact ttggttcgtg gcatggcaac actcctacgg ccaacggctg 1141 gtcaaattcg ggtcaatgga gtcgataccg taaaacatcc ggatcgtgta cggccgatga 1201 tcggtctggc cggtcaattt gcgtcggttg atgagtttca gactggccga gagaacttgg 1261 agatggtggg gcggctttat catcttaaga aacaagaagc caaggctcgt gccgttagac 1321 tacttgatga gctgaagctt actgaagccg ctgatcgcac cgtcaaaacc tactcggggg 1381 gaatgcgtcg tcggcttgat cttggcgcta gccttgtcgg ccagcccgaa atattatttt 1441 tggatgaacc aacaaccggc ttggaccccc gaacgcgact ggatctctgg gacactattc 1501 gcgaactagt tgcgaacggc acgacgatcc tactgacaac tcagtacctg gaggaggcgg 1561 atgagctggc gcagaaaatt ggtgttattg accagggcaa actgattgcc gaaggaaccg 1621 ccgatcagct caagaacaag ctcggcgccg acgttgtaga gtttgtgata agagacccag 1681 agctgaagga agcagcactt aaggcggtgc gctcggtagc taagaaaaag ccgacttatg 1741 acgacgagca tcgacgggta cgcgtgccgg ttgttgaagg ctccaagagc atgttgcgca 1801 tcgctcgtgc gcttgataat gcgggagtgt agcctagtga gatttctttg catcggccat 1861 ctttggatga tgtgttcttg agtattactg gtaagaaagc tgaagaaaag aaagagccac 1921 caaagaaggg agctcgggta tgaacgacgc agcgagtgtc gggttcttca aacaaatgac 1981 gtatgccgtg accgatacct gggagataac taaacgcaat gtgcggcgca acttccggtt 2041 gccgcagtta ttagtgttct catcgatcca gccggtaatg tttttgttgt tgttcaactt 2101 tgttttcggc ggagcagtca ctcaggggag tggagatacg tatattaact tcttgttgcc 2161 cggtattttg atccagacgg cgctatttgg agcgattcag accggtgtgg gactggctga 2221 ggacatgcaa aaaggagttg tcgataggtt ccgcagtctt ccgatgagtc gggtagcgca 2281 catggcgggg cgggtgaccg ccgatgccct gcgcaattta atcgtgcttg ggctcatgac 2341 ctttgttggt gtcttgcttg ggtttgattt tcagaacgga ttgattttag cgattacggg 2401 atacttcttg gcgattttct ttggatttgc gttctcttgg gtggcctcgc tttttggatt 2461 aattaccaag gacagtgaaa ccgcacaggt gcttggtttc ttgtggactt tccctctggt 2521 ttttgcgagc tctgtattcg ttccgccggc atcaatgccg ggctggttgc aggtgtttgc 2581 taataaccag ccggtcacac atgcggtgaa cgcgctgagg agtctcacgc agggcggcga 2641 tatggacgcc gtttggaaga cacttctttg ggtctcggcg atcttaatca tcttcgtacc 2701 ggtatcggtt aagcgctacc gcaacacctc gtaaacttgt gcgagccttt cattgctggc 2761 cgtttattgt ttaaatactt tcattcttct ggtcataact acttacaccc attagcctag 2821 gaggctcctt gacatgccca ctatcattgc gtcagatgct gacgttattc tgcagccctt 2881 catcattctc ctcgaaactt tcttgcaatc agtttggtcg atgacctggt ggttttacac 2941 aacaacgcct ggcctggaat cgatcactga ctggttcttc gatgttcaac ccagttctgt 3001 gctggtttgg atcgctttgc tgcactttgt gcccagtctc tggtgtacat cgatcgctga 3061 acaccgaatg ttcagccaca gctccctcca gatcatcagc cccacgttct acgggctcca 3121 ctacctgttt tcgtggtact accacatggg //