LOCUS JAAUUY010000339 4097 bp DNA linear ENV 05-APR-2020 DEFINITION Leptolyngbyaceae cyanobacterium SU_3_3 NODE_4268_length_4097_cov_1.083375, whole genome shotgun sequence. ACCESSION JAAUUY010000339 JAAUUY010000000 VERSION JAAUUY010000339.1 DBLINK BioProject: PRJNA612530 BioSample: SAMN14376599 KEYWORDS WGS. SOURCE Leptolyngbyaceae cyanobacterium SU_3_3 (stromatolite metagenome) ORGANISM Leptolyngbyaceae cyanobacterium SU_3_3 Bacteria; Cyanobacteria. REFERENCE 1 (bases 1 to 4097) AUTHORS Waterworth,S.C., Isemonger,E.W., Rees,E.R., Dorrington,R.A. and Kwan,J.C. TITLE Conserved bacterial genomes from two geographically distinct peritidal stromatolite formations shed light on potential functional guilds JOURNAL Unpublished REFERENCE 2 (bases 1 to 4097) AUTHORS Waterworth,S.C. TITLE Direct Submission JOURNAL Submitted (13-MAR-2020) Pharmaceutical Sciences, University of Wisconsin, Madison, 777 Highland Avenue, Madison, WI 53705, USA COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.12.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 3.29x Sequencing Technology :: IonTorrent ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/31/2020 08:46:48 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,941 CDSs (total) :: 3,930 Genes (coding) :: 2,918 CDSs (with protein) :: 2,918 Genes (RNA) :: 11 tRNAs :: 10 ncRNAs :: 1 Pseudo Genes (total) :: 1,012 CDSs (without protein) :: 1,012 Pseudo Genes (ambiguous residues) :: 0 of 1,012 Pseudo Genes (frameshifted) :: 868 of 1,012 Pseudo Genes (incomplete) :: 155 of 1,012 Pseudo Genes (internal stop) :: 78 of 1,012 Pseudo Genes (multiple problems) :: 87 of 1,012 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4097 /organism="Leptolyngbyaceae cyanobacterium SU_3_3" /mol_type="genomic DNA" /submitter_seqid="NODE_4268_length_4097_cov_1.083375" /isolate="SU_3_3" /isolation_source="Stromatolite" /db_xref="taxon:2720479" /environmental_sample /geo_loc_name="South Africa: Schoenmakerskop" /lat_lon="34.041167 S 25.5385 E" /collection_date="Apr-2018" /metagenome_source="stromatolite metagenome" /note="metagenomic" gene <1..459 /locus_tag="HC936_12985" CDS <1..459 /locus_tag="HC936_12985" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NJK53486.1" /translation="HPRPQCPTATLISSKPLCNTNTETAPTNYQQYIPIDTDNPPNEP ANVCKPEFLVQTFRSLGVDSNGNPATGLATPEGFVMGVRVYASVAEAELRANRGEIRQ ASLKGTSGLGGQRLRPLAVQYSTIVRSIASQNLSIYRKLCPASAATTGQC" gene 606..1673 /locus_tag="HC936_12990" /pseudo CDS 606..1673 /locus_tag="HC936_12990" /inference="COORDINATES: protein motif:HMM:TIGR02532.1" /note="incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="prepilin-type N-terminal cleavage/methylation domain-containing protein" gene 1710..2258 /locus_tag="HC936_12995" CDS 1710..2258 /locus_tag="HC936_12995" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="type II secretion system protein" /protein_id="NJK53487.1" /translation="MKRRNRSKNTIAGFTLIEGLVVLLMIAVLFAIAAPSWLALINNQ RIGTARGQVFEVLRSAQDEAKRTKVSREVRFDTTSPSAPRVAILPYKPASPIPNANVN NWQAIGETRPKSVKVTTSSANGNPIIFDTYGNLDPTNSTANYKVTIQIASAQNATSGS RRCVIVKTLLGAMAEGKDAECN" gene 2478..2931 /locus_tag="HC936_13000" /pseudo CDS 2478..2931 /locus_tag="HC936_13000" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016878603.1" /note="frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="prepilin-type cleavage/methylation domain-containing protein" gene complement(2980..>4097) /gene="glgB" /locus_tag="HC936_13005" CDS complement(2980..>4097) /gene="glgB" /locus_tag="HC936_13005" /EC_number="2.4.1.18" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_017286430.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=3 /transl_table=11 /product="1,4-alpha-glucan branching enzyme" /protein_id="NJK53488.1" /translation="HKEWGTLVFNYARNEVRNYLVSNAVFWFDKYHIDGIRVDAVASM LYLDYCRKEGEWVTNQYGGRENIEAAEFLRQMNHVVYSYFPGVLSIAEESTSWPMVSW PTYVGGLGFNLKWNMGWMHDMLDYFHMDPWFRQFHQNNITFSIWYNHSENFMLALSHD EVVHGKSNMIGKIPGDEWQKFASLRCLYAYMFAHPGKKTLFMSMEFGQWSEWNVWGDL EWHLLQFEPHQKLKSFMKALNTLYRSEPSLYTQDFAQEGFEWIDCSDNRHSVASFIRR DKDSGEWAIVVCNFTPQPHSHYRVGVPEPGFYTELLNSDARDYGGSNMGNLGGKWTDE WAYHNRPYSLDLCLPPLATLILKLDRQKTQAALNPGE" BASE COUNT 1091 a 1201 c 923 g 882 t ORIGIN 1 catccgcgcc cccaatgtcc cacggctacc ctgatatcct cgaagccact ctgcaacacc 61 aatacagaaa ccgctcccac caactaccag caatacatcc ccatcgatac agacaaccca 121 cccaacgagc cagccaacgt ttgtaagccc gaatttctcg ttcaaacctt tcgcagcctg 181 ggcgttgaca gtaacggcaa ccccgccaca ggcttagcca cgcccgaagg atttgtgatg 241 ggagttcgag tctatgccag cgtcgcagaa gcagaactac gggctaaccg aggagaaatc 301 aggcaagcca gcctcaaggg gacaagtggg ctaggggggc aacgcctgcg ccctttagca 361 gtccaatact ccaccatcgt ccgcagcatt gccagccaaa acctcagcat ttacagaaag 421 ctctgcccag ccagcgctgc cacaaccggc cagtgctaaa aggcagtgct aaagattggg 481 gttcaagatg acgaatcgca cgatcgaatc aggaagacta atggccaaac aacttaaact 541 gcgatccctc cagctctggt tctttcccaa acggagccga aagaggttca caaaaagagt 601 tcacaaaagg gttcaccctg gttgaactgc tggttgccct attcatcggc ggagtcatcg 661 tcacgctgct gctgtttacc gtcgtgcagc tactccaaac aaaccagcga gaagctgccc 721 gcagcgatac ccagcgcgag atgcaaatgg cgcttgacta tatttcgcgc gacttgcgcg 781 aagcagttta cgtctacgat gccaactgcc tggcaacacc caccaacttc aaccccgcca 841 cgctgaatac ctgccctggc ttgctaccct acctgccagc agacatcgca accaatgccg 901 agaacctgcc agtcctagct ttttggcgag tcgatgccct gcctcagccc ctcctcgatc 961 gctgcgaaaa caacgccaac gcatttagct caactgacag aaacgcggtt ttaccgcctg 1021 ccatccaagg agttccctgc atctctagcc agatgtatac cctggtagtc tactcgctca 1081 attggagagc cgaagaagaa tggcgcggca aagccagaat caggcgttat cagattcccc 1141 aatttgttta caatccccca ggtagccctc ccgatacaac ccttggctgg tattatcccg 1201 ccggacaaga taccgacttt tctcgctggc ctctcaaaaa aaccctgggt cttgacggca 1261 accccgtcaa cttacagcta ccacccagcg gtagaggcgc acccgttgtc aatctcacca 1321 cacccaacca agtcctcgta gactttgtag acaaggatgg tgtaaagttc gcagcagaca 1381 ctgcttgccc acggcccaac aatattactg acccccctcc tgcccctggc cctagcgtag 1441 tagactcaaa ccttaacaca cgctacacta tcactcccgc agtaaccccc aacattccga 1501 gaggcttcta tgtgtgcgtc aaaggagcgg agaataacgg cacgctcaac caggaggtcg 1561 tcgtcagaat tcaaggaaat gccgcaggtc ggccgggaat aagacgcgac gctagccttc 1621 ctatccccat ggagacccgt gtgctaaccc gtggagttgt caacaaaatc taggaacctg 1681 cgatttggag tgcctagctg gagaaaaaga tgaaaagacg aaaccgctca aagaacacga 1741 tcgctggctt caccctgatc gaaggattag tcgtcctgct gatgattgca gttctgtttg 1801 cgatcgccgc ccctagctgg ctggcgctga tcaacaatca gcgcatcgga actgcccgtg 1861 ggcaagtttt tgaagtcctg cgatcggccc aagacgaagc aaaacgcaca aaagtcagcc 1921 gagaagttcg atttgacacc acaagtccct ctgctcctcg cgttgcaatt ttgccctaca 1981 agcctgctag ccccattcct aatgccaatg taaataactg gcaggcgatc ggggaaacga 2041 ggcccaaatc cgtcaaagtc acaacttcat ccgccaatgg caacccaatc atttttgaca 2101 cctacggcaa cttagatcca accaactcca ctgccaatta caaagtcacc attcagattg 2161 cttctgccca aaacgctaca tctggttcgc gacgctgcgt gattgttaaa acattgctgg 2221 gtgcaatggc tgagggcaaa gacgctgaat gcaattagaa acgacttaac ccacgagcca 2281 aaatcgcaag ccatttttgg gaactctgat ctctgaagaa tttgcagaat caggcgatcg 2341 aacatgcgtt tgcaccgttt aagctcaggg aaaccaggca caagcctcca caaactggcg 2401 ctacaaaaac tcctcaacct tcatcgtgcc aatacccaaa aggtttcacc ctgctagaaa 2461 ttttagtagt ggtgttgatg attgcaattt tggcagcgat cgctgccccc agttggctct 2521 cctttctgaa tacgcggcga ttgagcacag cacagggtca agtttttgag attctgcgcc 2581 tcgcccaaaa cagtgccaaa ctcaagaaaa tcaactatca agtcagtttc aggcagcaag 2641 ccgacagagt tgagtgggcg gcgcaccccc tctggcatcc acctgggagg attgacgtgg 2701 aatactctag acaaaggagt tcttcttgac ccaggaacta cgcttctcca gtcaaacggc 2761 atctacagaa tgcaatttaa tcactacggt gaagtaagcg gacagcttgg aagagtcaca 2821 ctatccgctc ccagtgggca agctaaacga tgcgttatcg tctcaaccct gattgggtcg 2881 atccggacgg gacaaaacaa ccctagacgc agaggtaatc cctgtaacta gtgttgcaaa 2941 cacaaagttt tgcaacacta actctactct ccaggaactc tactctccag ggttcagggc 3001 ggcttgagtc ttttgtcgat cgagcttcaa aatcagcgtt gctaaaggag gcaagcagag 3061 atcgagggaa taggggcgat tgtgataagc ccattcatcc gtccatttgc cgcccagatt 3121 gcccatattg cttcccccat agtcacgggc atcgctattt aaaagctctg tgtaaaaccc 3181 tggctcaggc acaccaactc gatagtggct gtggggctga ggcgtaaaat tgcagacaac 3241 gatcgcccat tccccagaat ctttgtctcg acgaatgaaa gacgcaacgc tgtgccgatt 3301 gtcgctacag tcaatccact caaacccttc ttgagcaaag tcttgagtat acaaagacgg 3361 ttcactgcga tagagcgtat tcagcgcctt cataaagctc tttagcttct ggtgtggctc 3421 aaactgcaac agatgccact ctagatcgcc ccacacattc cactcgctcc actgcccaaa 3481 ctccatgctc ataaacagcg ttttcttgcc agggtgagca aacatatagg cgtagagaca 3541 gcgcaaactc gcgaactttt gccattcatc ccccggaatt ttaccaatca tgttgctctt 3601 gccatgcacg acctcatcgt gggagagcgc cagcataaaa ttttcgctgt ggttatacca 3661 aatactaaac gtgatgttgt tttggtgaaa ctgacggaac cacgggtcca tgtggaaata 3721 gtccagcatg tcgtgcatcc agcccatgtt ccacttcagg ttgaagccca agccacccac 3781 gtaggtcggc caagaaacca tcggccagga agttgactcc tcagcgatcg acagcacccc 3841 cggaaagtag ctgtagacta catgattcat ctggcgtaag aattctgctg cctcaatgtt 3901 ttcccggcct ccatattgat ttgtgaccca ctcgccttct ttgcggcaat agtctaaata 3961 gagcatcgaa gcgaccgcat ccacgcgaat tccgtcgatg tggtacttgt cgaaccaaaa 4021 tacagcattg gagacgaggt agttacgcac ttcgttgcgg gcgtaattga acaccaatgt 4081 gccccattct ttgtgtt //