LOCUS JAAKFV010000090 5176 bp DNA linear ENV 05-MAR-2020 DEFINITION MAG: Candidatus Anoxychlamydiales bacterium isolate KR126_chlam_4 KR126chlam4_90, whole genome shotgun sequence. ACCESSION JAAKFV010000090 JAAKFV010000000 VERSION JAAKFV010000090.1 DBLINK BioProject: PRJNA504765 BioSample: SAMN13933097 KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG. SOURCE Candidatus Anoxychlamydiales bacterium (marine sediment metagenome) ORGANISM Candidatus Anoxychlamydiales bacterium Bacteria; Chlamydiae; Candidatus Anoxychlamydiales. REFERENCE 1 (bases 1 to 5176) AUTHORS Dharamshi,J.E., Tamarit,D., Eme,L., Stairs,C., Martijn,J., Homa,F., Jorgensen,S.L., Spang,A. and Ettema,T.J.G. TITLE Marine sediments illuminate Chlamydiae diversity and evolution JOURNAL Curr. Biol. (2020) In press REFERENCE 2 (bases 1 to 5176) AUTHORS Dharamshi,J.E., Tamarit,D., Eme,L., Stairs,C., Martijn,J., Homa,F., Jorgensen,S.L., Spang,A. and Ettema,T.J.G. TITLE Direct Submission JOURNAL Submitted (13-FEB-2020) Department of Cell and Molecular Biology, Uppsala University, Biomedical Centre (BMC), Husargatan 3, Uppsala 752 37, Sweden COMMENT ##Genome-Assembly-Data-START## Assembly Method :: IDBA-UD v. v. 1.0.9 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 253.29x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..5176 /organism="Candidatus Anoxychlamydiales bacterium" /mol_type="genomic DNA" /submitter_seqid="KR126chlam4_90" /isolate="KR126_chlam_4" /isolation_source="marine sediment core GS08_GC12, 126 cmbsf" /db_xref="taxon:2705072" /environmental_sample /geo_loc_name="Arctic Ocean: Gakkel Ridge, Loki's castle" /lat_lon="73.763333 N 8.463833 E" /collection_date="2008" /metagenome_source="marine sediment metagenome" /note="metagenomic" gene complement(<1..199) /locus_tag="KR126chlam4_01485" CDS complement(<1..199) /locus_tag="KR126chlam4_01485" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NGX41642.1" /translation="MKKYLIAGLIILLPLILTIMIFVFVIDLFTAPFLTMFIDFLSKY EQTLTLLKNPTVITIFARILII" gene complement(196..855) /locus_tag="KR126chlam4_01486" CDS complement(196..855) /locus_tag="KR126chlam4_01486" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NGX41643.1" /translation="MKKYFITGLVILLPLTLTILIVAFVVNFLTKPFMGLVIKILANT KIQQIHTHILSSDQIIKYGSQILILIGLVLFTILLGLFARWFMFKGLIKLSDKILHKI PLVNKVYKTTQEIVKTLFITDKNSFKQVVMVPFPREGLYSLGLVSRKSPDTCIEAVKK ELISVFIPTTPNPTTGFLLLFKKEDLIYLDMKTEDAIKYIVSCGVIVPSKKVATAVES K" gene complement(896..1498) /locus_tag="KR126chlam4_01487" CDS complement(896..1498) /locus_tag="KR126chlam4_01487" /EC_number="3.2.2.-" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:P9WJP7" /codon_start=1 /transl_table=11 /product="putative 3-methyladenine DNA glycosylase" /protein_id="NGX41644.1" /translation="MKILPLNFYLNKDVIDVGQKLLGKYLFTKIDGVLTGGMITETES YKGIEDKACHAYMGKKTNRNETMFEVGGVAYVYLCYGMHSLLNVVTNQKEVPEAVLIR AIEPIVGLDEMLKRRNKLKVERTLTSGPGSLSKALGITKKINGKSFESKNIWIEDREV EISEKDIICSKRVGIDYAEEYVNKPWRFRIKNSKWTSVAK" gene complement(1526..2092) /locus_tag="KR126chlam4_01488" CDS complement(1526..2092) /locus_tag="KR126chlam4_01488" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NGX41645.1" /translation="MKKKLICIIILNLILLMMSFKSLSKYDYKNEPKYVHLADNIINK TANELKNEKRLHLIGHGGSLMYDVKKLGISFVSIDEITIEEGRKLIQYCAQKFLSNIN SNEQIRPYLNTVPFEAKDIDVAISFKERDMGKNHSIDFISMHYGKIVYDISDKEETLK TVHEETYDEALKIVESEKFNKEIKSTSE" gene complement(2092..3045) /locus_tag="KR126chlam4_01489" CDS complement(2092..3045) /locus_tag="KR126chlam4_01489" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NGX41646.1" /translation="MKINKFYMLLMLMFSLLSCSQNGPNSKSKYDYYTKGETFIKNEV SKFVKQNDLILNAYGINIDNDSSSPEWNAIHDFYFTFYSLEKVNLQQARKVLINCIEN LLNEINNNKELGNYLYTVPFTYKNLDLGIFFFNKKGRPRNENYIYTCAIDEDTIYYKI AYPNGTFKRIHEETYDEALKIVEREQSKASKIVALDWLEYLYQDKKNEILHFCESDGN IDTRNALKNLSEKDRERLNIVGIASAGTIEPTLAENIYHFAAREDIVDKIYFENQKKH PDNVSILDSCAYTNKLVRNLRHPIYEKHLKDEIRKFEVKDK" gene complement(3087..3629) /locus_tag="KR126chlam4_01490" CDS complement(3087..3629) /locus_tag="KR126chlam4_01490" /inference="ab initio prediction:Prodigal:2.6" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NGX41647.1" /translation="MIKLNWFLLLFLLISCKSNIKLEISQKEIIENQMIAKTGKELEN EKQLILSGFGGSSLKGYEHLAISFDYFNPLTIKKARKLILFTANRFLNNLNSNDVLKT LQTNQYEIQNIKIMIFCYMADKSSARPPNLGSIWLIKNKIYYNLREEDLKTIHKETYE EALKIVENEKSSKEIESPSE" gene complement(3636..5084) /gene="wapA_2" /locus_tag="KR126chlam4_01491" CDS complement(3636..5084) /gene="wapA_2" /locus_tag="KR126chlam4_01491" /EC_number="3.1.-.-" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:UniProtKB:G4NYJ6" /codon_start=1 /transl_table=11 /product="tRNA3(Ser)-specific nuclease WapA" /protein_id="NGX41648.1" /translation="MTRLSKNEDQYEINNLNEILSTNLKVFEYDKNGNPILKKSKNDE IRFFYDDLDRLIKVEKPRNFILTFEYDSFNRRISKKVIKPSKCYLNLGHLIEKEFKYF LYDDQNEIGSFDKELNQKELRILANTKKAEIGAAISFELNGSVYAPIYDISGNVTSLI LAKTLFEHYRYSSFGEEKRYNEFKPLIFDSFKPSPWRFSSKRIDNETNLVYYGRRYYD PEIGRWLTPDPQGFTDGLNLYAFVNNDPLINFDLYGLEVLAYHANSNFYQAMDKASGK SPTKFFDLNRREISPHKRIYFTNGINNLFHEAREAAQYLSKMANNSNIYGIYNEHLAK ASDVLRAGFSLSSPRRQSNASKLIAAEWIKYLDQDEKNEILHICHSEGNINTRNALRN IPDHYRKRINVVGIAPAAYMDRNHAKNIIHYAADKDFIPKIDFDSKRRNSGIVSILDS QGYEDKHVHSFQHPIYKERLQDHINMFINVGE" BASE COUNT 1660 a 824 c 665 g 2027 t ORIGIN 1 taattattaa aattcttgca aatattgtga tcacagttgg attttttaaa agagtcagag 61 tctgttcata tttcgataga aaatctataa acattgttaa aaaaggagct gtaaatagat 121 cgataacaaa tacaaaaatc attatcgtta atatcaaagg aagtaagatt ataagtcctg 181 ctattaaata ttttttcatt tactctctac tgcagtcgca actttttttg aaggaacaat 241 aaccccgcaa gatacaatgt acttaattgc atcttcagtt ttcatatcta aatagattaa 301 atcttctttc ttaaataata gtaaaaatcc agttgtcgga ttaggtgttg tcggaataaa 361 tacagaaatt aactcctttt ttacagcttc tatgcaagtg tctggagatt ttctactcac 421 caaccctaaa ctatataatc cctctcttgg aaaaggtacc atcactactt gcttaaatga 481 atttttatca gtaataaaca gggttttaac gatttcttgc gttgttttat aaaccttatt 541 aacaagtggt attttatgaa gtattttatc agatagtttt atcaatcctt taaacataaa 601 ccatctagca aaaagcccta aaagaatcgt aaataaaaca agcccaatca aaattagtat 661 ttgtgaacca tatttaatta tttgatccga tgataaaata tgtgtatgta tctgctgaat 721 cttcgtgtta gctaaaattt ttataacaag gcccataaat ggctttgtta aaaaatttac 781 aacaaaagca actatcaaaa tagtaagcgt caaaggaagc agaattacta aaccagtaat 841 gaagtacttt ttcatgattt taccttatat gattcgattc tataaagaaa ttgatttatt 901 tagcaacact tgtccacttg ctatttttaa ttctaaatct ccaaggctta tttacatact 961 cctcagcgta gtcaattcca accctctttg agcatataat atctttttct gaaatctcta 1021 cttctctatc ttctatccat atatttttac tctcaaaact ttttccattt atcttttttg 1081 taatgccaag tgccttactc aaagatccag gtcctgaagt aagtgttctt tcaactttta 1141 atttatttct tctctttaac atctcatcaa ggccaactat tggctctatc gctcttatca 1201 acacagcttc aggtacttct ttttgattag taacaacatt taataaagaa tgcattccat 1261 agcacaaata tacatatgca actccgccaa cctcaaacat tgtttcgttt ctattagttt 1321 tctttcccat atatgcatga caagccttat cctcgattcc tttataactt tctgtttctg 1381 ttatcattcc accagttaaa actccgtcta tcttcgtgaa gaggtattta ccaagaagct 1441 tttgaccgac atctataacg tctttattta agtaaaaatt taaaggtagg attttcatgt 1501 ttctaaatag tttttattaa taattttatt cagaagtgga tttgatttct ttgttgaatt 1561 tttcactttc aacgattttt aatgcttcat cgtaggtttc ttcgtggact gtttttaatg 1621 tttcttcttt gtctgaaata tcataaacta tttttccata atgcattgaa ataaaatcga 1681 ttgaatgatt ttttcccata tctctttctt taaaagatat tgctacatcg atatctttag 1741 cttcaaatgg aacagtattt agataagggc gaatttgctc attagaatta atattagaca 1801 aaaatttttg agcgcaatac tgaattaact ttcgcccttc ttcaatagtt atctcatcaa 1861 tactaacgaa actaatgcca agttttttaa catcatacat caacgatccg ccatgaccaa 1921 tcaaatgtaa tcttttttcg tttttcagtt cgttagctgt tttattaata atattatcag 1981 ccaagtgaac gtatttgggt tcattcttgt aatcatattt agataacgat ttaaagctca 2041 tcattaataa aattaagttc aatataataa tgcaaattag tttttttttc atcatttatc 2101 ctttacttca aattttctaa tttcatcttt taaatgtttt tcatatatag gatgtcgtaa 2161 attacgaaca agtttgtttg tatatgcgca tgagtctaaa attgatacgt tatctggatg 2221 ctttttttga ttttcaaaat aaattttatc tacaatatct tctcttgcag caaaatgata 2281 aatattttct gcaagagttg gttcaatagt tcccgcagat gcaatgccaa ctatatttag 2341 tctctctctg tctttttctg atagattttt taaagcattt cgagtgtcta tattgccatc 2401 gctttcacaa aaatgtagta tttcattttt tttatcttga tataaatatt ccagccaatc 2461 caaagcaact attttacttg ctttggattg ttctctctca acgattttta aagcttcatc 2521 gtatgtttct tcgtggattc gtttaaaagt tccgttagga taagcaattt tatagtatat 2581 agtatcctca tcaatagcgc aggtgtatat gtagttttca tttcttggtc tacctttttt 2641 gttgaagaaa aaaataccta aatctaaatt tttgtaagta aaaggaacag tatataaata 2701 attacctaat tctttgttat tattgatttc attcaggaga ttttcgatac agtttatcaa 2761 tacctttctt gcttgctgga gatttacctt ttccaatgaa taaaacgtaa aataaaaatc 2821 atgaattgca ttccattcag gagaactact atcattatct atatttatac cataagcatt 2881 taagatgaga tcattttgtt ttacaaactt agaaacctca tttttaataa acgtttctcc 2941 tttagtgtaa tagtcatatt ttgatttact atttggtccg ttttgagaac agcttagtaa 3001 cgaaaacatt aacattaata acatataaaa tttatttatt ttcattatgc actccatatt 3061 ataagaaata gttttcatta ataattttac tcagatgggg attcgatttc tttgctggat 3121 ttttcgttct caacgatttt taatgcttct tcataggtct ctttgtggat tgtttttaga 3181 tcttcttctc ttaaattata atagatttta ttttttatta accatattga tcctaggttt 3241 ggaggtcttg cactagattt atcagccata taacagaaaa tcattatttt gatattttgt 3301 atttcatatt gatttgtttg tagcgttttt aaaacatcat tggaattaag attgttcaaa 3361 aatcgattag ctgtgaaaag aataagcttt ctagcttttt ttatggtcaa aggattaaaa 3421 taatcaaaac taatagcaag atgctcgtaa cctttaagac tggagcctcc aaaaccagaa 3481 agtattaatt gtttttcatt ttcaagttct ttcccagtct ttgctatcat ttgattttca 3541 ataatctctt tctgagaaat ttcaagttta atatttgatt tacaactaat taataaaaat 3601 aacaataaaa accaatttaa cttaatcatt tctttttatt ctcctacatt aataaacata 3661 tttatatgat cttgtaatct ttctttatag attggatgct ggaaactatg aacgtgtttg 3721 tcctcatatc cctgggagtc taaaattgat acaatgcctg aattccttct tttactatca 3781 aaatcaatct taggaataaa atctttatcg gcagcataat gaataatatt ttttgcatga 3841 tttctatcca tgtatgcagc aggagcaata ccaacaacat ttattctctt tctatagtga 3901 tctgggatat ttctcaaagc atttctagta tttatatttc cctcactatg acaaatatgt 3961 aatatttcat ttttttcatc ttgatccaaa tattttatcc attctgcagc aattaactta 4021 cttgcattag attgtcttct tggagaagaa agagaaaacc ccgcccttaa aacatctgat 4081 gctttagcta aatgctcatt atatatacca tatatattac tattatttgc cattttagac 4141 aaatattgag cagcttctct tgcttcatga aataaattat taattccatt tgtaaaataa 4201 attcttttat gtggagatat ttctcttctg tttaaatcaa aaaatttagt aggtgatttt 4261 cctgaagctt tatccatagc ttgataaaaa ttagaatttg catggtatgc aagaacttct 4321 aacccatata gatcgaaatt tatgagagga tcattattaa caaaggcata gagattaagc 4381 ccatcagtga acccctgagg atctggggtt aaccatctac ctatttcagg atcgtaatat 4441 cttctgccat agtatactag atttgtttca ttatctattc ttttagaaga gaatctccag 4501 ggggatggtt taaaggaatc aaaaattaat ggcttaaatt cattatatct tttttcttca 4561 ccaaaagatg aatacctata atgttcaaag agagtttttg ctaaaattaa agatgtgaca 4621 tttcctgaaa tatcatagat aggggcatag acagaaccat ttaattcaaa agagatagca 4681 gctcctattt cagctttttt tgtattagct aaaattctaa gctctttttg attgagctct 4741 ttatcgaaag atcctatttc attttgatca tcatataaga aatatttaaa ttctttttct 4801 attaaatgtc ctagatttaa ataacattta gatggtttta tgactttttt agatattctt 4861 ctattaaaag aatcatattc aaatgtaagt ataaagtttc ttggtttttc tacttttatg 4921 agcctgtcta aatcatcata aaaaaatcta atctcatcat tttttgattt ttttaaaatt 4981 ggattaccat ttttatcata ttcaaagact tttaaattag tagagaggat ttcatttaag 5041 ttatttattt cgtattgatc ttcattttta gagagtctag tcaattactc ctttctaaag 5101 aaaggagcat gagttgcagt tccaatcgct tcagataggc agagatttcg tgggactgct 5161 ataggccaac tgacat //