LOCUS JAAEES010000199 3698 bp DNA linear ENV 15-JUL-2020 DEFINITION Methanomicrobiales archaeon isolate MM3 28_30bin5_9_scaffold_262346, whole genome shotgun sequence. ACCESSION JAAEES010000199 JAAEES010000000 VERSION JAAEES010000199.1 DBLINK BioProject: PRJNA587831 BioSample: SAMN13220427 KEYWORDS WGS. SOURCE Methanomicrobiales archaeon (marine sediment metagenome) ORGANISM Methanomicrobiales archaeon Archaea; Euryarchaeota; Stenosarchaea group; Methanomicrobia; Methanomicrobiales. REFERENCE 1 (bases 1 to 3698) AUTHORS Zhang,C.-J. TITLE Metabolisms of Novel Methanogens in Mangrove Sediments JOURNAL Unpublished REFERENCE 2 (bases 1 to 3698) AUTHORS Zhang,C.-J. TITLE Direct Submission JOURNAL Submitted (08-NOV-2019) Institute for Advanced Study, Shenzhen University, Nanshan District, Shenzhen, Guangdong 518060, China COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: IDBA v. 1.1.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 24.94x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/30/2020 16:01:05 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.11 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 1,650 CDSs (total) :: 1,619 Genes (coding) :: 1,590 CDSs (with protein) :: 1,590 Genes (RNA) :: 31 tRNAs :: 30 ncRNAs :: 1 Pseudo Genes (total) :: 29 CDSs (without protein) :: 29 Pseudo Genes (ambiguous residues) :: 0 of 29 Pseudo Genes (frameshifted) :: 20 of 29 Pseudo Genes (incomplete) :: 7 of 29 Pseudo Genes (internal stop) :: 2 of 29 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3698 /organism="Methanomicrobiales archaeon" /mol_type="genomic DNA" /submitter_seqid="28_30bin5_9_scaffold_262346" /isolate="MM3" /isolation_source="mangrove sediment" /db_xref="taxon:2184052" /environmental_sample /geo_loc_name="China: Shenzhen" /lat_lon="22.53 N 114 E" /collection_date="2017-04-01" /metagenome_source="marine sediment metagenome" /note="metagenomic" gene complement(<1..435) /locus_tag="GKC06_07780" CDS complement(<1..435) /locus_tag="GKC06_07780" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007314329.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="8-oxoguanine DNA glycosylase" /protein_id="NYT17885.1" /translation="MHQVAIPSRRFSLDLTLSCGQVFRWERNGDWWQGIVGNEVIRIR QEGDLLLIESGRKETIRSYFQLDLDLDRILRSIDRDPVIHGAIRRCRGLRIIRQDPWE CLASYICATYANIPGIKKKIRLLSESFGELLETESGTFYRFPS" gene 660..986 /locus_tag="GKC06_07785" CDS 660..986 /locus_tag="GKC06_07785" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_015286500.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NYT17886.1" /translation="MELIETLRTFLENGEDWERKMTSISGVTILKLPATKSRHASLAI EINPLTEKGTPMKKKGVMIMGSAELDAFREIFNSEKMDILITSIEAITPSRKAAKGEK EDILQV" gene 1083..1550 /locus_tag="GKC06_07790" CDS 1083..1550 /locus_tag="GKC06_07790" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NYT17887.1" /translation="MRLPVCLSRIISIPGIVSAILVGLILVSGCSSPPADGGVKPEPP GILVQYQRTGGIAGFNDQMVVFENGQGVYSRNSGSGTFTLADTSLNELEDILETADFP SLAPDYPAENPGADYFLYVITYQGTTITTETGGIPPELIPVIGRLDALLGEYS" gene complement(1738..2631) /gene="nifB" /locus_tag="GKC06_07795" CDS complement(1738..2631) /gene="nifB" /locus_tag="GKC06_07795" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007314325.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="nitrogenase cofactor biosynthesis protein NifB" /protein_id="NYT17888.1" /translation="MTEEGYREADVGGKKVKWDPEQLRRIREHPCFSERACHAFGRAH VPVAPKCNIQCNYCIRDYDCVNESRPGVTSKVLSPEEAVDLVRKAIEKFPYIKVIGIA GPGEPLANDGTFETLRRLQEEFPNVIKCLSTNGLLLPDKIDLLKKYDVGNITVTLNAV DPEIGAKIYEFVNYKGKKYTGVEGARILLENQLRGIEMAIERHMIVKINTVYIPGINE DHIPEIARKVGEMGVYNFNLIPLIAQYKFADIAPPTPEMKRKMQDECEKYVRQMRHCQ RCRSDAVGRLGHDVQSCLYQE" gene 2866..3387 /locus_tag="GKC06_07800" CDS 2866..3387 /locus_tag="GKC06_07800" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_015869075.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase" /protein_id="NYT17889.1" /translation="MAICCALVACSGCTSPQQPVARTGDTVHVYYTVSLSDGTMIQSN RNDTPLEFTIGNGSVVPGFEEAIVGLSPGQTKTVTIPPEKAYGPYRQELVSTLETDAV RQTIDKLEANKSLGLLTYPGIGEVYIWPRPDGTIGYLQFSNITEETTTVDENHPLAGK DLVFEITLVDIVG" BASE COUNT 880 a 967 c 965 g 886 t ORIGIN 1 cgaaggaaaa cggtagaacg tacctgattc cgtctccagg agttcgccga atgattcgga 61 gaggagtctg attttctttt tgatgccagg gatgttggca tatgtggcgc agatatagga 121 ggcaaggcat tcccagggat cctggcggat gatacggaga ccccggcagc gtctgatggc 181 accgtggata acgggatcgc ggtcgattga ccggagaatc cggtccaggt ccaggtcgag 241 ctggaaatag gagcggatgg tctctttgcg ccctgattcg atcagcagca ggtcgccctc 301 ctggcggatg cggatcacct cattccccac aatcccctgc caccagtcac cgttccgctc 361 ccaccggaac acctggccgc agctgagcgt caggtcaagg gagaacctcc gcgagggtat 421 ggcaacctgg tgcatggtta cagagttaag gtggggtgtg cggggaagaa ataggtctcc 481 atggtgtcag aaaccgcact atgctccggt gtccggttcc gggttcccgg actattccct 541 tccacggacc ggagggggct gaacacgtcc cgtatattac ggacttcttc ccgtctcccc 601 tcctcttctt tcattccgca cacgcagggt tttaatgttg gagctaccga atctctggta 661 tggaactgat tgagaccctc aggacatttc ttgagaacgg tgaggactgg gagcggaaga 721 tgacctccat cagtggggtt accatcctga agctccccgc gacaaaatca cgtcacgcgt 781 cacttgccat cgagataaac cccctcaccg aaaagggcac gccaatgaag aagaaagggg 841 tcatgatcat gggatccgct gaactggacg cattccggga gatatttaac agcgagaaga 901 tggatatcct gatcacctcc atcgaggcca tcacaccatc ccggaaagcg gcaaaggggg 961 agaaagagga tattctccag gtctgatccc tggttttctt ttttccggca ggataggcat 1021 atatgcccga acaggcaaaa tgagaataaa cccggtcagg ataccggagc ggagtgtgcg 1081 gtatgaggtt gccagtctgc ctttcccgga taatttcgat cccaggcatt gtgtcagcaa 1141 tcctggtcgg ccttatcctc gtgtcaggat gcagctcgcc accggctgac ggtggcgtta 1201 agcccgagcc tcccggaatc ctggtccagt accagcggac aggtggcatt gccggattca 1261 atgaccagat ggtggtattt gagaacggcc agggggtata ttcccggaac agtggttcag 1321 gtacattcac cctcgccgat acttccctga acgagcttga ggatatcctg gaaactgctg 1381 atttcccttc ccttgccccg gattatcccg ccgaaaaccc cggagcagat tatttcttgt 1441 atgtcattac ctaccaggga acaacgatca ccaccgagac cgggggaata ccccccgagc 1501 ttatcccggt aatcgggcgg cttgatgccc tgctcggtga atattcctag aggaaagata 1561 tccccctacc cctcactgca gatcggttat ccaccggact gtggaacccc cggtcgtacc 1621 cgcaggcacg gcaggtggag aagtcctcgt gcaggaccac acgttccggc tcggctgaat 1681 tattcatgaa agaatggtgg tggcaggtct gatttagaag tatccgaaaa atgagagtta 1741 ttcctgatag agacaggact ggacatcgtg accgaggcgc ccgactgcat cggaacggca 1801 ccgctgacaa tgccgcatct gcctgacata tttttcacac tcgtcctgca tcttccgctt 1861 catctccggt gtcggtggtg cgatatcggc aaatttgtac tgtgctatca gggggataag 1921 attgaaattg taaacgccca tctcccccac ttttctggct atttcgggga tgtgatcttc 1981 gttgattccc gggatgtaga ccgtgttgat cttgacgatc atgtgccgct caatggccat 2041 ctcaataccc ctgagctgat tttcaagaag gatcctggcc ccttcgacac cggtatattt 2101 tttcccttta tagttgacaa attcgtaaat ttttgcccct atctcgggat cgacggcatt 2161 cagggtaacc gtgatattcc ctacatcata ttttttcagg aggtcgatct tatctggaag 2221 gaggagcccg ttggtgctga gacacttgat gacattgggg aactcttcct gaagccgccg 2281 cagcgtctcg aatgttccgt catttgccag gggttccccc ggaccggcaa tcccgatgac 2341 cttgatgtac gggaacttct ctatcgcctt cctgaccaga tctaccgcct cttcgggact 2401 gaggaccttt gaggtgaccc ccggtctgct ctcatttaca cagtcatagt ccctgatgca 2461 atagttgcac tggatattgc acttcggtgc aaccggaaca tgagcccttc cgaacgcatg 2521 gcaggcccgc tccgaaaagc agggatgctc cctgattctc ctgagctgtt cagggtccca 2581 ctttaccttc tttccgccga catctgcttc ccggtatcct tcttcggtca tggtgcctct 2641 cacatccagc taatgttaga aaggttcggg ctttggatat aaaaaataat tcaatcgggt 2701 tatttggctg aaatcaaggt attacctctg gattttccag acaggacaga gattccgtcc 2761 gggaactcct gtcagattga aagagcaatc catatccgtc ccgtgaacca cttagctatc 2821 atgactctga agaagagcag cttgaaggca tggattccct atatcatggc catatgctgt 2881 gcccttgttg catgttcggg atgcacctcc ccacagcagc ctgtcgcccg gacgggagat 2941 acggtacacg tatattacac cgtatcgctt tctgacggga ccatgatcca atcgaataga 3001 aacgatacac ctcttgaatt cactattggg aatgggagcg tagttcccgg ttttgaggag 3061 gcgattgtgg ggctttcccc agggcaaacc aaaacggtga ccatccctcc tgagaaggca 3121 tatggtccat accggcagga actggtaagt acacttgaga cggatgcggt cagacagacg 3181 attgataagc ttgaggcgaa taagagcctg ggtctcctga cctatcccgg tatcggtgaa 3241 gtgtatatat ggccgagacc ggatggaacg ataggatatc tgcaattttc caacatcacc 3301 gaggagacaa ctaccgttga tgagaaccat cccctcgccg gaaaagatct cgtctttgag 3361 atcacccttg ttgatatcgt cggatagcgg tgatgggaaa gagcgcatcc tctgcagatg 3421 cccgcgttat cccagtgaac aaagaattgg ggaaatgttc aaaggggaaa taaaccccct 3481 ggatcaaaat tcctgaaaca ggcaggaaaa cagggctcaa aggtcagaga agcctttatt 3541 gaaaaataat ctcttaaata ggatatttcc tgtttttaac ggattaaaac agaaaaagag 3601 atcgtggatg ggcaatgctg cccgatgcga tccgatacct tttttatcag gatgtagtat 3661 tttcaaaatg gtgtaccgaa caaccgcccc gtcattgc //