LOCUS ASTSSP12S 3250 bp DNA linear PLN 08-DEC-2015
DEFINITION Avena sativa 12S seed storage globulin gene, partial sequence.
ACCESSION J05485
VERSION J05485.2
KEYWORDS 12S globulin; storage protein.
SOURCE Avena sativa (oats)
ORGANISM Avena sativa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Pooideae; Poodae; Poeae; Poeae Chloroplast Group 1 (Aveneae
type); Aveninae; Avena.
REFERENCE 1 (bases 1 to 3250)
AUTHORS Shotwell,M.A., Boyer,S.K., Chesnut,R.S. and Larkins,B.A.
TITLE Analysis of seed storage protein genes of oats
JOURNAL J. Biol. Chem. 265 (17), 9652-9658 (1990)
PUBMED 2351662
REFERENCE 2 (bases 1 to 3250)
AUTHORS Shotwell,M.A., Boyer,S.K., Chesnut,R.S. and Larkins,B.A.
TITLE Direct Submission
JOURNAL Submitted (17-APR-1990) Dept. of Plant Sciences, University of
Arizona, Tucson, AZ 85721, USA
REFERENCE 3 (bases 1 to 3250)
AUTHORS Shotwell,M.A., Boyer,S.K., Chesnut,R.S. and Larkins,B.A.
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2015) Dept. of Plant Sciences, University of
Arizona, Tucson, AZ 85721, USA
REMARK Sequence update by database staff to remove vector contamination
COMMENT On Dec 8, 2015 this sequence version replaced J05485.1.
Original source text: A.sativa (genomic library lambda-Charon-34),
clone lambda-OG1-E1.
Draft entry and computer-readable sequence for [1] kindly submitted
by M.A.Shotwell, 17-APR-1990.
FEATURES Location/Qualifiers
source 1..3250
/organism="Avena sativa"
/mol_type="genomic DNA"
/db_xref="taxon:4498"
gene 885..>3250
/gene="12S seed storage globulin"
regulatory 885..890
/regulatory_class="other"
/gene="12S seed storage globulin"
/note="CAT box"
regulatory 917..921
/regulatory_class="TATA_box"
/gene="12S seed storage globulin"
exon 983..1310
/gene="12S seed storage globulin"
/number=1
intron 1311..1427
/gene="12S seed storage globulin"
/note="intron A"
exon 1428..1702
/gene="12S seed storage globulin"
/number=2
intron 1703..1828
/gene="12S seed storage globulin"
/note="intron B"
exon 1829..2344
/gene="12S seed storage globulin"
/number=3
intron 2345..2444
/gene="12S seed storage globulin"
/note="intron C"
exon 2445..2882
/gene="12S seed storage globulin"
/number=4
regulatory 2915..2920
/regulatory_class="polyA_signal_sequence"
/gene="12S seed storage globulin"
regulatory 2965..2970
/regulatory_class="polyA_signal_sequence"
/gene="12S seed storage globulin"
BASE COUNT 1024 a 656 c 581 g 989 t
ORIGIN 1 bp upstream of EcoRI site.
1 gaattctttt tggaaagtca ttttgcctcc tgaactccag tgtttcctat ttattaaaaa
61 aaactaaaaa ctatatttat aagtttgaaa aaatcatgaa acaaaattgt aaaaattgct
121 agtgatatat cccacaaacg tgcaaaatct caatttgaag tgctttgtat ttcgagctac
181 acaaaaatga caaagtgtga ctttttatgt gatttgaaat cactatacta cagatctaca
241 attttgttct ttttgtgaag ctataaatac acattatttt gagttgagat ttttcatgtt
301 tgtgctatga atcataggct acatcctgat ttatttttag aattttttgg aacctaaaat
361 atgttctaga ttatttttta aaaagtggga tcattgatgc ccatacacac gaaatctcca
421 ctcaattctt ttatacatta tctttctata tctactaacg tggattatac atcatagtaa
481 gtttcttact acatgtgctt tcttgttaca atgtggacat gactcttcca cttttgggct
541 ttatgttgta tggatatact catgacatgg aattttgtcc acacacgtag aaccatccat
601 atatattgtt gtgcatagaa caaaacacaa gcaagccatg aaaaaggagt cacaggtgcc
661 acaaactgtt gtaggaagta taactagtat gaggcctttt atttgacgtc ggacaatggc
721 caagagctac atataaaaga tggtgctaga tttgtgagtc agcaccagct gtaggcagaa
781 aacaacacat atcttttgag acaaagttat atctattcac atttaaaacc atgatctgtt
841 gagtcaccat gaatatcttc ttatctatgt taataattac atgtcatcat gtttatcctg
901 gactactttt tatggctata aaatcaaact tacaataagg aaactagcac caatccacct
961 tctacaatct cttcaaacaa tcatggcaac tactaggttt ccatcattgt tgttttactc
1021 ctatattttt ctcttgtgca atgggtcaat ggctcagcta ttcgggcaga gctttacccc
1081 atggcaaagc tctcgacaag gaggtttaag ggggtgcaga tttgataggc tacaagcatt
1141 tgaaccactt cgacaagtgg ggtcacaagc gggtatcatt gagtactttg atgagcagaa
1201 tgagcaattt cgttgtgcag gtgtatccgt catccgtcgt gttattgagc ctcaaggcct
1261 cttgttacct caataccaca acgctcctgg cttggtgtac atccttcaag gttagtgtct
1321 aattgattat aaaaattgcc tttgttatac ttcacttagg atttagatgt gccaaatgtt
1381 acaccgttca tattttttaa caatgaaaca aatgtgtttt cttttaggta ggggattcac
1441 agggttgact ttccctggat gcccggcgac cttccaacaa cagttccaac catttgatca
1501 agcccagttt gctgaaggtc aaagccaaag ccaaaatctt aaggatgaac accaaagagt
1561 tcaccacatc aaacaaggag atgttgttgc tctaccggct ggcatagtac actggtgcta
1621 caacgatggt gatgcaccga ttgtagctgt ctatgtcttc gacgtaaaca acaacgctaa
1681 tcagcttgaa ccaaggcaaa aggtaactat acaacttaat gcacacaaaa tatatacaac
1741 tatttacaag tgatccaact atgatttgaa gtatacatta gtgggatatt aatgaactct
1801 gtttaacttc atcgatataa aattttagga gttcttgttg gctggtaaca acaagagaga
1861 gcaacagttt ggacaaaaca tattcagtgg attcagtgtc caacttctta gtgaggccct
1921 tggtataagt cagcaagtag cacaaaagat tcagagtcaa aatgaccaaa gaggtgagat
1981 aattcgtgtg agtcaaggcc ttcaattctt gaagcctttt gtttcccaac aaggaccagt
2041 agagcatcaa gcctaccaac caattcaaag tcaagaagaa caatcaaccc aataccaggt
2101 agggcaatca ccacaatatc aagaaggaca atcaactcaa taccagccag gacagtcatg
2161 ggaccaaagt ttcaatggtt tggaggagaa tttctgttca ttggaggcaa ggcaaaacat
2221 cgaaaacccg aaacgtgccg acacgtacaa cccacgtgct ggcaggataa cacatctcaa
2281 tagcaagaat tttcccaccc ttaacctggt gcaaatgagt gctacaagag taaatttata
2341 ccaggtattt atgatactac attcaacaca ctatcttatt tttagatatt ctaagcttca
2401 tacaaccgat taataatatg gcatacaaat aattgctatt gcagaatgct attctttcac
2461 catactggaa cattaatgct cacagtgtca tgcacatgat ccaaggacgt gctcgagttc
2521 aagttgtcaa taaccatggt cagaccgtat tcaatgacat tcttcgtcgc ggacaactgc
2581 taatcatacc acaacactat gttgttctca agaaggcaga gcgtgaagga tgccagtata
2641 tttcattcaa gaccaacccc aattccatgg ttagccagat cgcaggaaag acctccatcc
2701 tacgtgcatt gcccgttgat gtcctcgcca atgcataccg catttctaga caggaagccc
2761 aaaacctcaa aaataaccgt ggagaagagt ttgatgcatt cacccctaag tttacacaaa
2821 cgggctccca gagttaccag gacgaggggg agtcatcttc gactgagaag gcatccgagt
2881 gaataagtga gtgtaatgga aactagtata gtgaaataaa ggcatcgcat gtttgcagcc
2941 tagtggtata taaccgctta tctcaataaa aaagtttctc cgtgttatat tgtttgcttg
3001 tttcttgtac tcttcttaat tttatctttt atgatcaacc aacttacctc tcttcttcaa
3061 ttttctgcca ctcttcacat atgcatatca aggagacgta tagtccactt gtactagatt
3121 tattttttgg tactatcttt tgtggtttga gtatttctta ggtccgataa aaacattcaa
3181 tttactgatg ctaaattttt tcagcaaacc tagccaccta aaattgtgaa tcacatacct
3241 tcaaatttct
//