LOCUS ICSX01000001 975 bp mRNA linear TSA 17-NOV-2022 DEFINITION TSA: Grus monacha mRNA, Grmm00001. ACCESSION ICSX01000001 VERSION ICSX01000001.1 DBLINK BioProject:PRJDB7809 Sequence Read Archive:DRR350763 BioSample:SAMD00156792 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Grus monacha (hooded crane) ORGANISM Grus monacha Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus. REFERENCE 1 (bases 1 to 975) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Direct Submission JOURNAL Submitted (11-NOV-2022) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, Biodiversity Division; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan:Kagoshima REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Japanese Hooded Crane transcriptome shotgun sequence JOURNAL Unpublished (2022) COMMENT ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: Illumina Hiseq ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..975 /cell_type="cultured cells derived from muscle" /collection_date="2017-02-08" /country="Japan:Kagoshima" /db_xref="taxon:40818" /mol_type="mRNA" /organism="Grus monacha" /sex="female" /submitter_seqid="Grmm00001" CDS 121..282 /codon_start=1 /product="putative protein" /protein_id="LAH91711.1" /transl_table=1 /translation="MAMTRSARAERELMMCCWMRNWATSTMLLKERLRIFSAQSQVRA QAASITSLL" BASE COUNT 150 a 292 c 318 g 215 t ORIGIN 1 gtgggtgatg aaggggggaa caagccgtgg gcagctggag ggggacgccg catcccaacc 61 cttggggatc ccgacggggc gagcggggcc ggggctccac cccacccacc tgagaccacc 121 atggccatga ccaggtcggc acgggccgag cgggagctga tgatgtgctg ctggatgagg 181 aactgggcca cctccacgat gttgttgaag gagcgtttga ggatcttctc ggcccagtcg 241 caggtcaggg cgcaggccgc ctccatcacc tcgctgttgt aggactgcac caggtccgac 301 agctccgatg gctgggtctc tgtcactttg aggtccaggc tgggcagggg cggcaggctg 361 accaccgtct tcctccggat cccgctgtag cagtactgcg actgtcctcg acctcccagc 421 cgtcgggctt tgatgtttgg gaagatctcc cggatgatct tgccgaaatt ggcagtgctc 481 agtgggcgac agcagaggtt atcgcagtat cgcttgtagg cgtcgtagac atccttcttg 541 ggcaggcagg tgtccgtgtg ctcttccagg tggtttcgga tccagttgca cgcgtgcatg 601 tactcagctg tgctcagcga gctcaggtcc aggctaccgc tcttttcccc caagcttggt 661 cccgacggca gctggaggta gaggtagagc ttgtcattgt ctgagaactt ctggacatct 721 tgcaggatgg agtccacttt gttctgcacg gatttggaga tgctgctttt cagctcctgc 781 agcagcgtgc tcgactcggt cgtgctgccc cgtgagccac tgggtgacaa acttcccttt 841 ttggcagctc gggcactcag ctctttgtca gccatgacat ttggttcctg cgggcggcta 901 cagccggggc cccgctcgcc tcatgccggg ccggctccgc ccggttcggt ccggttcggt 961 ccggtccccg ccacg // LOCUS ICSX01000002 1219 bp mRNA linear TSA 17-NOV-2022 DEFINITION TSA: Grus monacha mRNA, Grmm00002. ACCESSION ICSX01000002 VERSION ICSX01000002.1 DBLINK BioProject:PRJDB7809 Sequence Read Archive:DRR350763 BioSample:SAMD00156792 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Grus monacha (hooded crane) ORGANISM Grus monacha Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus. REFERENCE 1 (bases 1 to 1219) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Direct Submission JOURNAL Submitted (11-NOV-2022) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, Biodiversity Division; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan:Kagoshima REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Japanese Hooded Crane transcriptome shotgun sequence JOURNAL Unpublished (2022) COMMENT ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: Illumina Hiseq ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1219 /cell_type="cultured cells derived from muscle" /collection_date="2017-02-08" /country="Japan:Kagoshima" /db_xref="taxon:40818" /mol_type="mRNA" /organism="Grus monacha" /sex="female" /submitter_seqid="Grmm00002" CDS 59..526 /codon_start=1 /product="putative protein" /protein_id="LAH91719.1" /transl_table=1 /translation="MGGEERMAAAPGAVGRSPGGMRGRSRGRRATRAFTWGLLAALGG SGGFFFSGRGVPGGLGLLSFLICPWLLSPLSEASRPFFFVVSGVRPSRWIFSVLSETT MAMTRSARAERELMMCCWMRNWATSTMLLKERLRIFSAQSQVRAQAASITSLL" BASE COUNT 161 a 367 c 415 g 276 t ORIGIN 1 cagcagggcc accttgaccg tgccccccag gggggcagcc gtgattttgg gtgccaggat 61 gggaggggag gagcggatgg ccgcggcacc aggcgccgtt ggtcgttccc ccggcgggat 121 gcggggcagg agcaggggca ggcgggcgac cagggcgttc acctgggggc tgctggccgc 181 cttggggggc tccgggggct tcttcttctc gggccggggc gtgccggggg gcttggggct 241 gctgtccttc ttgatctgcc cctggctcct gtcgccgctc tcggaggcgt ccaggccgtt 301 cttcttcgtc gtcagtgggg tccgaccctc acggtggatc ttttccgtgc tctctgagac 361 caccatggcc atgaccaggt cggcacgggc cgagcgggag ctgatgatgt gctgctggat 421 gaggaactgg gccacctcca cgatgttgtt gaaggagcgt ttgaggatct tctcggccca 481 gtcgcaggtc agggcgcagg ccgcctccat cacctcgctg ttgtaggact gcaccaggtc 541 cgacagctcc gatggctggg tctctgtcac tttgaggtcc aggctgggca ggggcggcag 601 gctgaccacc gtcttcctcc ggatcccgct gtagcagtac tgcgactgtc ctcgacctcc 661 cagccgtcgg gctttgatgt ttgggaagat ctcccggatg atcttgccga aattggcagt 721 gctcagtggg cgacagcaga ggttatcgca gtatcgcttg taggcgtcgt agacatcctt 781 cttgggcagg caggtgtccg tgtgctcttc caggtggttt cggatccagt tgcacgcgtg 841 catgtactca gctgtgctca gcgagctcag gtccaggcta ccgctctttt cccccaagct 901 tggtcccgac ggcagctgga ggtagaggta gagcttgtca ttgtctgaga acttctggac 961 atcttgcagg atggagtcca ctttgttctg cacggatttg gagatgctgc ttttcagctc 1021 ctgcagcagc gtgctcgact cggtcgtgct gccccgtgag ccactgggtg acaaacttcc 1081 ctttttggca gctcgggcac tcagctcttt gtcagccatg acatttggtt cctgcgggcg 1141 gctacagccg gggccccgct cgcctcatgc cgggccggct ccgcccggtt cggtccggtt 1201 cggtccggtc cccgccacg // LOCUS ICSX01000003 2114 bp mRNA linear TSA 17-NOV-2022 DEFINITION TSA: Grus monacha mRNA, Grmm00003. ACCESSION ICSX01000003 VERSION ICSX01000003.1 DBLINK BioProject:PRJDB7809 Sequence Read Archive:DRR350763 BioSample:SAMD00156792 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Grus monacha (hooded crane) ORGANISM Grus monacha Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus. REFERENCE 1 (bases 1 to 2114) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Direct Submission JOURNAL Submitted (11-NOV-2022) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, Biodiversity Division; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan:Kagoshima REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Japanese Hooded Crane transcriptome shotgun sequence JOURNAL Unpublished (2022) COMMENT ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: Illumina Hiseq ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2114 /cell_type="cultured cells derived from muscle" /collection_date="2017-02-08" /country="Japan:Kagoshima" /db_xref="taxon:40818" /mol_type="mRNA" /organism="Grus monacha" /sex="female" /submitter_seqid="Grmm00003" CDS 1505..1687 /codon_start=1 /product="putative protein" /protein_id="LAH91727.1" /transl_table=1 /translation="MFYVHYDRITKEKGMLQKFQRDSFPETIFPPHLASRELILSIAC LLLRQELQTTIQYKIQ" BASE COUNT 804 a 378 c 294 g 638 t ORIGIN 1 caacaatcta ttattggttt ctttcaggaa gagttcaata cctcatacat aatattagat 61 gcaaatagcc tgactgtgtt agggtttaag tgatttttaa ctgttctagt acgtttcaga 121 aaaaaaatgg tttgagtgct tgtgcatatt aagagctaac cctggcagca agtattgcgc 181 tgccttttcc aatacaaacc atttcattct atgacatatg aactattgtt atagaacata 241 accatcactt ttaaaattca atgatcagac aataaatgaa aacaaatcca gaggttgtta 301 gacactaacc aaggtttctc aaatgcttcc tccctacaaa ttgttccact gaagtcctac 361 aggattaagt atacacagaa gctagaatga aaactaagga ttcatcctac aaaatctgga 421 aacaaaaata aaaaaaatgt attaagataa gctgatgatc tcgcacatat tatttaaaaa 481 ctactgtatt ttgccaaaca atttccatag taattgtagt tttaaaaaat gcaaaaccgg 541 aaaaaaccct gacctagctt gaacatttca tccacaaacc ccccagttgg atttttattc 601 tttgagcatt atagcaaatc aaaagttaaa gctgcaaagg gaaataaaca aaaaaaatct 661 gagtgtgcag ggaactgact gcatctagaa cctatgtgtg tatgtacata gcgctgcttt 721 tatttgaact aacttctttt tacccacata aagaaaaaga tttaactgac cgttaacagc 781 ttcttcgcag tatcactgat aataattatg ttttgacagt tctgtataaa aagttcagtc 841 tagaaactca agacatttca gtccattctc tatttttacc acatttaaaa aacaagacaa 901 cttccttcct taacaacaaa aatattattt aagcataccc agaaaggtac tagggtctaa 961 caaaaatatt ctgaatttcc ttttcaacta ataaagtatt tataagacat tttgcacaga 1021 tatttatttc ccaaatgaag gagtggcaac tttctcttaa acataaaagc taaaatttac 1081 ttttgctaaa tataaaagta attctcagga tacagtatac aaaaccagat attcatgagg 1141 aatacacttt gtgttatact acactattgt atcttttcca aaaggttttc tgtatttgaa 1201 aaaaaaaaat aaaatttaaa tatactgtaa ggcattcaaa ttattttaaa cacaaaaaaa 1261 tctacagaca gtgacatata cataaagagt tgggaagttg taacttaaag attgcagctt 1321 ttaatcagac cttctcataa acgctagcct caaaagaacc ctattcgcta caagaagcat 1381 ctgcatggtt ttaagactta actatgcaga ctcctattgc cccagggcag tgctgcacaa 1441 atctattgaa aacgatcaga ctgcagaatc aacaccttaa attttcccag aaaacctcca 1501 acaaatgttt tatgtgcatt atgacagaat aacaaaagaa aaagggatgt tacaaaaatt 1561 tcagcgtgac agttttcctg aaactatttt cccaccacat ttggcaagca gagaactaat 1621 cctatctatt gcctgtctac tcttacgcca agaactgcaa actacaattc aatataaaat 1681 acaataacct tctataataa ttatgtccct cttagaacaa agattaaaat aaactgtgct 1741 gattcatact ttccataaat tactaaaaag gtgagagatt cagacatttt gcttctgaat 1801 aataagccta atatctgtat catgtgcaaa agtgcaactg tgttttagaa ctgaggccca 1861 actgaataca attttgttat taaagaaaat atacttgaac ccacttaaca cggaaaacag 1921 tggttcttgg tatcttatat actttacata tttaaatctg ttgtaaaact gcaagttagt 1981 aaaaaataca aaaaatagaa atgaacagaa aacaacaaag cttgtatata aattggttta 2041 caattcaaag cacaacagta agcttcaaat aattacattt cagtaataca cacagaggtg 2101 ggatgatttg ctca // LOCUS ICSX01000004 3032 bp mRNA linear TSA 17-NOV-2022 DEFINITION TSA: Grus monacha mRNA, Grmm00004. ACCESSION ICSX01000004 VERSION ICSX01000004.1 DBLINK BioProject:PRJDB7809 Sequence Read Archive:DRR350763 BioSample:SAMD00156792 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Grus monacha (hooded crane) ORGANISM Grus monacha Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus. REFERENCE 1 (bases 1 to 3032) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Direct Submission JOURNAL Submitted (11-NOV-2022) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, Biodiversity Division; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan:Kagoshima REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Japanese Hooded Crane transcriptome shotgun sequence JOURNAL Unpublished (2022) COMMENT ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: Illumina Hiseq ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3032 /cell_type="cultured cells derived from muscle" /collection_date="2017-02-08" /country="Japan:Kagoshima" /db_xref="taxon:40818" /mol_type="mRNA" /organism="Grus monacha" /sex="female" /submitter_seqid="Grmm00004" CDS 89..2506 /codon_start=1 /inference="similar to AA sequence:RefSeq:XP_015136657.2" /product="calcium-independent phospholipase A2-gamma isoform X1" /protein_id="LAH91734.1" /transl_table=1 /translation="MTVHLSLDAYLFFVINPKSLWWKQRNKYLYLYRPKVCWRINHAI HQRVFHTSEPRCKWARSRTFWYNKYIYSHDFLYYRVSKLLTSSSKGLAKVNNRMSRIK NTIESVSKAVSGTHSELVSRIARLKSHSGTLGKASKSNAGANNIDADLENYKQVTDAR TQEDCNRGLAAKKSTYASENSESMLVSSDGTYQDTPEDSVSAKNHLFHISYFSTNFGE TYSFVADHINWYFNNNSVMDQEKKRSVLLQDSKSEERNKLDSSETTVTSEEKTVDSAA TLAPEAETLGAEKTNTSLPVSTKKSIANFLSYPSNSVQAFVDSYIGGLVPKLRSDTKV VSQERSKQPEQEASEKDEEDKAKEAKTAEEREKHLSLQREKIIARVSIDNRTRALVQA LRRSSNRRVCISRVEELTYHLLEFPESRGVAIKEKLIPCLLRLRQANDESLQAAVRET LAIIGYTDPVKGWGVRVLAIDGGGTRGLVALQTLRKLEELTGKPVHQLFDYICGVSTG AILAFMLGLFHIPLDDCEELYRKLGSDVFKQNVIVGTVKMGWSHAFYDSDIWEKMLKE KMGSNLMIETARNSKCPKVAAVSTIVNRGTPLKAFVFRNYNHFPGVKSHYIGGCQYKL WQAIRASSAAPGYFQEYILGNDLHQDGGLLLNNPSALAVHECKCLWPSVPLQCLISLG TGRYESEGKTNVTYTSLKAKLTNVISSATDTEEVHTMLDALLPPDTYFRFNPLMNEDI PLDESRKEKLNQLQTDGIRYLERNEEKLRKAAKILTQEKTALQRLQDWIRLKADMYEG LPFLSKL" BASE COUNT 1006 a 526 c 641 g 859 t ORIGIN 1 ataacacctt gatatgagac ttactgaaat atattttctg ggatgaagta gacaagcaac 61 atagaaaagg tgtaattatt tataagtaat gacagttcat ttatctttag acgcatattt 121 gttctttgtg attaacccaa aaagtctgtg gtggaagcag agaaacaaat acctgtattt 181 gtatagacct aaagtctgct ggagaataaa tcatgccatt caccagagag tttttcatac 241 aagcgagcct cggtgtaaat gggccagaag cagaacattt tggtataaca aatacattta 301 cagccatgac tttttatact acagagtttc taaacttcta acttcttctt caaagggact 361 tgcaaaagtg aacaatcgca tgtcacgaat taagaatact atagaatctg tttcaaaggc 421 agtatctggt actcacagtg aactggtttc acggatagct cgattaaagt cacactcagg 481 tactctggga aaagcaagta aaagtaatgc aggtgcaaat aacattgatg cagatctaga 541 aaactataaa caagtcacag atgccagaac tcaggaggat tgcaacagag gcctagctgc 601 aaagaaatcc acttatgcaa gtgaaaactc agagtctatg ttagtaagtt cagatggcac 661 ttaccaagat actccagaag attcagtgtc tgctaaaaac cacctttttc atataagcta 721 cttttctacc aattttggag agacttacag cttcgtagct gatcatatca actggtactt 781 taataataat tctgttatgg atcaagagaa aaaaaggagt gtgttattac aggactctaa 841 aagtgaagag aggaataagc ttgattcatc agaaactact gtaacgagtg aggaaaagac 901 agtggattca gcagctactt tagctcctga agcagagact ctgggcgctg aaaagacaaa 961 tacttctctt ccagtttcca ctaaaaaaag tattgcaaac tttctttcat atcccagtaa 1021 cagtgtacaa gcttttgtag acagttacat tggtgggttg gttcccaagt taagatccga 1081 tacgaaagtt gtttcacaag aaaggagcaa acagcccgaa caagaagcgt ctgagaaaga 1141 tgaggaggac aaagcaaaag aggctaagac tgcagaagag agggaaaagc atctgtctct 1201 tcagagagaa aagattattg caagagtgag tattgataac aggactcgag ctttagttca 1261 agccctccga agatcctcta atcgaagagt ctgtatcagc agggttgaag aactgaccta 1321 tcatcttcta gaatttccag agagcagagg agttgcaatt aaggaaaaat taatcccatg 1381 cctactgcga ctgagacagg caaatgacga aagtcttcag gctgctgttc gagagacttt 1441 agctataatt ggatatacag accctgtgaa aggctgggga gttcgagtcc ttgctattga 1501 tggaggaggg acaaggggtt tagttgcact tcagactcta cggaaactag aagaactgac 1561 tggaaagccg gttcatcaac tttttgacta catttgtggt gtaagcacag gagctatatt 1621 agcttttatg ttggggttgt tccatatccc tctggatgat tgtgaagaac tgtatcgcaa 1681 gttaggatca gatgttttta agcagaatgt cattgttgga acagtcaaaa tggggtggag 1741 ccacgccttt tatgacagtg atatatggga aaaaatgctc aaagaaaaaa tgggctcaaa 1801 tcttatgatt gaaactgcaa gaaattccaa atgtccgaag gtagctgcag taagcaccat 1861 tgtaaacaga ggaacaccac tgaaagcatt tgtttttaga aactacaatc acttccctgg 1921 tgttaagtct cattatattg gaggctgtca gtataaactg tggcaggcca ttagagcatc 1981 atctgctgca ccaggttact ttcaggagta cattttgggc aacgatcttc atcaggatgg 2041 aggtctgctt ctaaataatc cttctgcact tgcagttcat gagtgcaagt gtctttggcc 2101 aagtgttccc ttgcagtgtc taatatcgct gggcaccggt cgctacgaaa gcgagggaaa 2161 gacaaatgtt acatacacca gtctgaaagc caaactcaca aatgttatca gcagcgcaac 2221 tgatacagaa gaagttcaca ccatgctgga tgcactgtta cctccagata cttatttcag 2281 atttaaccct cttatgaatg aagacatacc tctggatgag agtcgtaaag agaaactcaa 2341 tcagctgcag acagatggaa ttcgttactt agaacgaaat gaagaaaaac tgagaaaagc 2401 cgcaaaaata ttaacgcaag aaaaaacagc tttgcagaga cttcaggact ggataagatt 2461 aaaggctgac atgtatgagg gccttccatt tctttccaaa ttgtgaatat gtaatgcatg 2521 aatcttgtac cagaaaatcc attcagtact gtaaaggaag aatgtttatt gggggtaaat 2581 gacatctttg gaaagccatc agaattctgg agaaagcgat tcaggatggc tggtttgtgc 2641 acacttactt gatacgaggt tttatggtgt taattatttt ttgaacttta tggatcttac 2701 tgttgctcta ctttgttaaa gtcgataaaa ctgaaaatta tgaaaacaat tgtgctatgc 2761 atttttggat gtatgtacca taattatggt ggcagtaaaa ttttatttct caactaccag 2821 gcttattcaa aattaaaaaa taaaatcctc attcacttta gtgtaggcag tatacttgtt 2881 aggctcatat agccagtgaa tttaatagaa atatcatgtt cttacaaaaa cattgtctct 2941 gtttattgca ctttacattt gaaagataac acttaaattc tttttttatt ttcagtggtt 3001 tttgtacata acagtattga gtaagatgtt tg // LOCUS ICSX01000005 2530 bp mRNA linear TSA 17-NOV-2022 DEFINITION TSA: Grus monacha mRNA, Grmm00005. ACCESSION ICSX01000005 VERSION ICSX01000005.1 DBLINK BioProject:PRJDB7809 Sequence Read Archive:DRR350763 BioSample:SAMD00156792 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Grus monacha (hooded crane) ORGANISM Grus monacha Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus. REFERENCE 1 (bases 1 to 2530) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Direct Submission JOURNAL Submitted (11-NOV-2022) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, Biodiversity Division; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan:Kagoshima REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Japanese Hooded Crane transcriptome shotgun sequence JOURNAL Unpublished (2022) COMMENT ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: Illumina Hiseq ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2530 /cell_type="cultured cells derived from muscle" /collection_date="2017-02-08" /country="Japan:Kagoshima" /db_xref="taxon:40818" /mol_type="mRNA" /organism="Grus monacha" /sex="female" /submitter_seqid="Grmm00005" CDS 89..2446 /codon_start=1 /inference="similar to AA sequence:RefSeq:XP_015136657.2" /product="calcium-independent phospholipase A2-gamma isoform X1" /protein_id="LAH91743.1" /transl_table=1 /translation="MTVHLSLDAYLFFVINPKSLWWKQRNKYLYLYRPKVCWRINHAI HQRVFHTSEPRCKWARSRTFWYNKYIYSHDFLYYRVSKLLTSSSKGLAKVNNRMSRIK NTIESVSKAVSGTHSELVSRIARLKSHSGTLGKASKSNAGANNIDADLENYKQVTDAR TQEDCNRGLAAKKSTYASENSESMLVSSDGTYQDTPEDSVSAKNHLFHISYFSTNFGE TYSFVADHINWYFNNNSVMDQEKKRSVLLQDSKSEERNKLDSSETTVTSEEKTVDSAA TLAPEAETLGAEKTNTSLPVSTKKSIANFLSYPSNSVQAFVDSYIGGLVPKLRSDTKV VSQERSKQPEQEASEKDEEDKAKEAKTAEEREKHLSLQREKIIARVSIDNRTRALVQA LRRSSNRRVCISRVEELTYHLLEFPESRGVAIKEKLIPCLLRLRQANDESLQAAVRET LAIIGYTDPVKGWGVRVLAIDGGGTRGLVALQTLRKLEELTGKPVHQLFDYICGVSTG AILAFMLGLFHIPLDDCEELYRKLGSDVFKQNVIVGTVKMGWSHAFYDSDIWEKMLKE KMGSNLMIETARNSKCPKVAAVSTIVNRGTPLKAFVFRNYNHFPGVKSHYIGGCQYKL WQAIRASSAAPGYFQEYILGNDLHQDGGLLLNNPSALAVHECKCLWPSVPLQCLISLG TGRYESEGKTNVTYTSLKAKLTNVISSATDTEGWCLKTHLNCDCFQLLMFLRVVVSVQ RAICNLLSFSFSSPPHPIKTTRNTSLRNSLCVVGGLVPVLQLLWR" BASE COUNT 804 a 471 c 543 g 712 t ORIGIN 1 ataacacctt gatatgagac ttactgaaat atattttctg ggatgaagta gacaagcaac 61 atagaaaagg tgtaattatt tataagtaat gacagttcat ttatctttag acgcatattt 121 gttctttgtg attaacccaa aaagtctgtg gtggaagcag agaaacaaat acctgtattt 181 gtatagacct aaagtctgct ggagaataaa tcatgccatt caccagagag tttttcatac 241 aagcgagcct cggtgtaaat gggccagaag cagaacattt tggtataaca aatacattta 301 cagccatgac tttttatact acagagtttc taaacttcta acttcttctt caaagggact 361 tgcaaaagtg aacaatcgca tgtcacgaat taagaatact atagaatctg tttcaaaggc 421 agtatctggt actcacagtg aactggtttc acggatagct cgattaaagt cacactcagg 481 tactctggga aaagcaagta aaagtaatgc aggtgcaaat aacattgatg cagatctaga 541 aaactataaa caagtcacag atgccagaac tcaggaggat tgcaacagag gcctagctgc 601 aaagaaatcc acttatgcaa gtgaaaactc agagtctatg ttagtaagtt cagatggcac 661 ttaccaagat actccagaag attcagtgtc tgctaaaaac cacctttttc atataagcta 721 cttttctacc aattttggag agacttacag cttcgtagct gatcatatca actggtactt 781 taataataat tctgttatgg atcaagagaa aaaaaggagt gtgttattac aggactctaa 841 aagtgaagag aggaataagc ttgattcatc agaaactact gtaacgagtg aggaaaagac 901 agtggattca gcagctactt tagctcctga agcagagact ctgggcgctg aaaagacaaa 961 tacttctctt ccagtttcca ctaaaaaaag tattgcaaac tttctttcat atcccagtaa 1021 cagtgtacaa gcttttgtag acagttacat tggtgggttg gttcccaagt taagatccga 1081 tacgaaagtt gtttcacaag aaaggagcaa acagcccgaa caagaagcgt ctgagaaaga 1141 tgaggaggac aaagcaaaag aggctaagac tgcagaagag agggaaaagc atctgtctct 1201 tcagagagaa aagattattg caagagtgag tattgataac aggactcgag ctttagttca 1261 agccctccga agatcctcta atcgaagagt ctgtatcagc agggttgaag aactgaccta 1321 tcatcttcta gaatttccag agagcagagg agttgcaatt aaggaaaaat taatcccatg 1381 cctactgcga ctgagacagg caaatgacga aagtcttcag gctgctgttc gagagacttt 1441 agctataatt ggatatacag accctgtgaa aggctgggga gttcgagtcc ttgctattga 1501 tggaggaggg acaaggggtt tagttgcact tcagactcta cggaaactag aagaactgac 1561 tggaaagccg gttcatcaac tttttgacta catttgtggt gtaagcacag gagctatatt 1621 agcttttatg ttggggttgt tccatatccc tctggatgat tgtgaagaac tgtatcgcaa 1681 gttaggatca gatgttttta agcagaatgt cattgttgga acagtcaaaa tggggtggag 1741 ccacgccttt tatgacagtg atatatggga aaaaatgctc aaagaaaaaa tgggctcaaa 1801 tcttatgatt gaaactgcaa gaaattccaa atgtccgaag gtagctgcag taagcaccat 1861 tgtaaacaga ggaacaccac tgaaagcatt tgtttttaga aactacaatc acttccctgg 1921 tgttaagtct cattatattg gaggctgtca gtataaactg tggcaggcca ttagagcatc 1981 atctgctgca ccaggttact ttcaggagta cattttgggc aacgatcttc atcaggatgg 2041 aggtctgctt ctaaataatc cttctgcact tgcagttcat gagtgcaagt gtctttggcc 2101 aagtgttccc ttgcagtgtc taatatcgct gggcaccggt cgctacgaaa gcgagggaaa 2161 gacaaatgtt acatacacca gtctgaaagc caaactcaca aatgttatca gcagcgcaac 2221 tgatacagaa ggttggtgtc ttaagacaca tttgaattgt gactgttttc agcttttgat 2281 gtttcttaga gttgtagttt cagttcagag agcaatctgc aaccttctgt ctttctcctt 2341 ctcctctccc ccccacccca tcaaaactac tcgaaacacg tctctccgta actcattatg 2401 tgtagttggt ggtttagtac cagtattaca gcttttgtgg agatgataat atgaatgcat 2461 tttttagcct tatctccata agtcttcatc ttcactatgt tcttgtaagc tcttttagtt 2521 tgagttctca // LOCUS ICSX01000006 4251 bp mRNA linear TSA 17-NOV-2022 DEFINITION TSA: Grus monacha mRNA, Grmm00006. ACCESSION ICSX01000006 VERSION ICSX01000006.1 DBLINK BioProject:PRJDB7809 Sequence Read Archive:DRR350763 BioSample:SAMD00156792 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Grus monacha (hooded crane) ORGANISM Grus monacha Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus. REFERENCE 1 (bases 1 to 4251) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Direct Submission JOURNAL Submitted (11-NOV-2022) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, Biodiversity Division; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan:Kagoshima REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Japanese Hooded Crane transcriptome shotgun sequence JOURNAL Unpublished (2022) COMMENT ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: Illumina Hiseq ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..4251 /cell_type="cultured cells derived from muscle" /collection_date="2017-02-08" /country="Japan:Kagoshima" /db_xref="taxon:40818" /mol_type="mRNA" /organism="Grus monacha" /sex="female" /submitter_seqid="Grmm00006" CDS 139..1134 /codon_start=1 /inference="similar to AA sequence:RefSeq:XP_414994.2" /product="UDP-xylose and UDP-N-acetylglucosamine transporter" /protein_id="LAH91750.1" /transl_table=1 /translation="MHPAVAVGLVFGGCCSNVVFLELLVRQFPGCGNIVTFSQFLFIA VEGFIFEANFGRKRPAIPIRYYFIMVAMFFTVSVVNNYALNLNIAMPLHMIFRSGSLI ASMALGIIILKKRYSVSKYTSIALVSLGIFTCTLMSAKQVASDSSLNEEDGLQVFLWW LLGIAALTFALLMSARMGIFQETLYKQFGKHSKEALFYNHALPLPGFLLLAPNIYHHA ILFSQSEPFQVPVIGLTVPIMWFYLLMNVVTQYVCIRGVFILTTECTSLTVTLVVTLR KFVSLIFSILYFRNPFTAWHWLGTIFVFVGTLMYTEVWNSLGPFLARWRKRPKEE" BASE COUNT 861 a 1076 c 1149 g 1165 t ORIGIN 1 gggcggcggg cggggagcga actaccggcg cccgggagga agcgggggcg gcgtggccgg 61 aggcgggagc ggggccgcgg cccgggaccg ggatgcggtg gtggcccggg acgtcgtctc 121 gctgtttggg gcgacactat gcacccggcc gtggcggtgg ggttggtgtt cggcggctgc 181 tgcagcaacg tggtgttcct ggagctgctg gtcaggcagt ttccaggatg tgggaacata 241 gtgacattct cccagttcct atttattgcg gtggaaggct ttatcttcga agccaacttt 301 gggaggaaga ggccggccat accaataagg tactatttca tcatggtggc catgttcttc 361 actgtcagtg tggtgaataa ctatgccctg aacttaaata tcgccatgcc gctgcacatg 421 atcttcagat caggctctct catagcaagc atggctctag gtatcataat tttgaagaaa 481 agatacagcg tatctaaata cacgtccata gccctggtgt ccctggggat ctttacctgc 541 actttgatgt ctgcaaagca agtggcatct gactccagct taaatgaaga ggatggactc 601 caggttttct tgtggtggct gctaggtatt gctgcactca cctttgccct cctcatgtct 661 gccaggatgg ggattttcca ggagacgctg tacaagcagt ttgggaagca ctccaaagag 721 gctcttttct acaaccatgc gttaccactt cctggctttc tcctccttgc cccaaacatc 781 taccaccatg caatcctctt cagccagtct gagccattcc aggtcccagt gatcgggctg 841 actgtgccaa ttatgtggtt ctaccttctc atgaacgtcg tcactcaata cgtctgcatc 901 cgcggcgtct tcatcctcac cacggagtgc acctccctca ccgtcacgct ggtggtgacg 961 ctgcgcaagt ttgtcagcct catcttctcc atcctctact ttcgcaaccc cttcaccgcc 1021 tggcactggc tgggcaccat cttcgtcttt gtggggactc ttatgtacac ggaggtgtgg 1081 aacagcctcg ggcccttcct ggctcgctgg agaaagaggc cgaaggagga gtaacagctg 1141 gggactctct gcagggacct ttttattgtt ttttagagca aagcagcagg gaatcccccg 1201 gaagggggtt gtttttataa cacgggggag atgttggctg tgccaagctc ctgggaaacg 1261 tggagcctct gctgggaacc tacctgaaat ggatcatgga gacacgatac ggttattttt 1321 gcaaggttgc atttttttta tgcaaccctt ttttgcttcc aacctctccc cctgtttttt 1381 ttttcatttg aataaccctt tttaagtact gtaaaagctg acccagttct ctgttaggag 1441 cccagccttg ctgtggtgct gttgtccact cctcctagct ttgatgagct ggaccctgag 1501 cctgtttggt gccgtccttt aatgtccagg tggccatagc ggatggctga gccccgggga 1561 actgctgttt gtgcagcagg ttgttagtta cactggaaat gcccagcctg gctgttcatc 1621 tgagcccttg ttgcctgatc ctaccacctg tactgggagg tggcggatac acctatagct 1681 tgagccttcc agtctgccca gtagatcctc cactggggaa tggctcaggg ggctgattcc 1741 caagccactg agcccccgtc actagtagca gggcctaggg agcctgagga aaccaaaaga 1801 ggagtgatgc taaggggaca gaaagtgccg ctgtgtcacc ttcacagcct tctcggggag 1861 agggtgaagc gatgctgagg ctttgccaag gcctctgatg ttgccctggt acttcaccag 1921 ccggagcgtg tcatgggttc ctcctgcttt gcttaggtcc tcagcgcagg tcacttttca 1981 gttgcttcct gctttctccc tcgttacaag tgtgttcagt gggcttcatt tccagcagcc 2041 agctgcaacg aactctgctg agcccccaac gtgcctgtgg tccccccggg tccagcccaa 2101 cctcagggtt caaatgctgc caagaaactt aagaaaggcc agtacaactg agcttatttc 2161 tgctgctggg ggcgctggtt ttgtagttct ctttctcttc tttctttctt tcttgcttgc 2221 ttgcttgctt gctttctttc tttctttctc tgctttcttt ctttctttct ctgctttctt 2281 tctcttctcc tctcctctcc cccacccctt gggcatcagc ttcgcttgtg gcatttctgt 2341 gcatcatagc agcatccgcc tggcaccagg ccggtgtccc tcagtgtcac ccctgagctg 2401 gggcaggggt ggccttcagg agctttgggt gtgtgtcccc acgcaggcag tgcgcgtctc 2461 ccagcaaggt gaggagcagc aaccacagct cttctaggag ccgctcagcg ttgggcagag 2521 caggggttag cgtgcagcct tggtctcgga gcagtgagga gcactgcttt gcgctgcctc 2581 agttttcctg gaggaccttg tctcatcatc atgatactgt ccctgctcag ccgcgataat 2641 gaaggcatcc agcaacgtcg acctgattcg cgtcaagctt ggccaagtaa ggactatatt 2701 cctgttcctt cacccagtgt cccgatggct tccagccttg gtgattacaa ctcctccagc 2761 attaaacctg tgctcatggt gggcgaaccc tggccggcca tgaagcacca cacagctggt 2821 actgggggag taggaagggc aaaaccaagg aaacttgtaa gtaccaataa agacggttta 2881 ataagcaaaa gaaacaggaa gggcggggaa gaaaccccac aagtgatgca aaggcaacca 2941 ctcatcacct cccaccatta gacctatggc cagtccccaa gcaacggcca ccttcccaaa 3001 aaacccttcc tctccatttt tattgcttgt ttttatctgc atcagttgtc ctggctgttc 3061 cccctcctag cttcttgccc gcttgtggtg taatgaccgg ggtgggccaa agtggggaaa 3121 aaagggaaag ccttgatgac gtgcaagtgc tgaaacaccg atgtgttgtt aacaccggtt 3181 tagccacaaa tctgaagcct ggcaccatac gggctgctat ggaaaaagtt aactccatcc 3241 cagagccagt ccaatgctga tgggacctac agctcgctcc ttcccgagat gctgaaggtt 3301 ttttttcttc tggatttgat tttacctgag cttgaaaaac ctgttgtatt ttgggtgtca 3361 ggcatggggt gttttcaagg attttgtaga tggggagact ggttcccacc agcagcccca 3421 gcacctagtg caggtcagct ctcacttcct gctgtttgtg caggctccag gaaggactga 3481 gagagaggca aaacctttat cccttgtctt gatattaacg gctgtttaca tggaggcagt 3541 gaggtagggg aaggcgacac aaattcaaca caaaagcatc ggggacgctg aggaactggt 3601 ggggtttgtc aaagcgtaaa ggcagaaact gcgttcgtgg cggggcggca ggaactgtaa 3661 ctcctgctcg gtggcagtgg gtgctgttgc ctgggttggg gatttagcaa agcaatagct 3721 gagcaggtgc ctgagtgagt gtaacatact gtacatagac tactcgctgg gtcgctctgt 3781 atcgaggaaa ttgcatgttc tctccaattt ctgtgtgatg ctggtaggtt tgggcatgtt 3841 tgggtttctc tttttttaac gtgtgctgta cttggtcttc actcgaacca tgtgtcaatg 3901 atgggttgtt atttgttgtt gtcaggggta tttttttttt taactttaca gtgtggtctg 3961 tgtgtttctg aatatttata attgttacag cgattccctt cctgctgtag gagagtgggt 4021 gagcttgccc agttgtgaga tggaggaaag gtccatgcag aagggcccca ttggccaaaa 4081 caagtatttg aatccagagc tcccccccca aaaatggggc tactgatttg tttgatttta 4141 atgtttgctg tagagataat agcacatatt ttttagcaga ggctggaaaa gtgggtgagc 4201 caaaatactt tttgatcagt gttctggatt tgcagagtgt ttgggttggc t // LOCUS ICSX01000007 1439 bp mRNA linear TSA 17-NOV-2022 DEFINITION TSA: Grus monacha mRNA, Grmm00007. ACCESSION ICSX01000007 VERSION ICSX01000007.1 DBLINK BioProject:PRJDB7809 Sequence Read Archive:DRR350763 BioSample:SAMD00156792 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Grus monacha (hooded crane) ORGANISM Grus monacha Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus. REFERENCE 1 (bases 1 to 1439) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Direct Submission JOURNAL Submitted (11-NOV-2022) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, Biodiversity Division; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan:Kagoshima REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Japanese Hooded Crane transcriptome shotgun sequence JOURNAL Unpublished (2022) COMMENT ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: Illumina Hiseq ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1439 /cell_type="cultured cells derived from muscle" /collection_date="2017-02-08" /country="Japan:Kagoshima" /db_xref="taxon:40818" /mol_type="mRNA" /organism="Grus monacha" /sex="female" /submitter_seqid="Grmm00007" CDS 191..1243 /codon_start=1 /inference="similar to AA sequence:RefSeq:XP_040511270.1" /product="aprataxin isoform X1" /protein_id="LAH91758.1" /transl_table=1 /translation="MRVCWLVGKEKCSQRMKLPHLEAVVIGRGPETGITDKKCSRQQV QLKADCNKGYVTVKQIGVNPTSVDLVNIGKDEEVKMKPGQVLHIVNKLYPYTVQFAEE SGKTVTEAEKKIQTNKMRREVSSENDDVELVPRKTMKMEMVDTQGSSANSKLSNTGVS PHEGTSSKKEHLGHWSQGLKSSMQDPKMQVYKDEKTVVIKDKYPKARYHWLILPWDPI SSLKSVTRDNLELLEHMHAVGQKMIDQCPARESLEFRLGYHAIPSMSQLHLHVISQDF DSPALKTKKHWNSFTTDYFLNSQDVIEMVRSKGKVMVKDHVSELLKLPLRCHHCKQQL STIPQLKEHLRKHWPK" BASE COUNT 446 a 309 c 368 g 316 t ORIGIN 1 gccggcggcc tgcggcgccg cgggtcggta aataccgtcg tccggcggcg acgggggggg 61 cctggggggc ggcggagctg ggatgctcct cccatccgcg ggagctcccc tctgcatcga 121 ttgtgtggtg ctggtggttg ttgccgtgtg ccagtccccc gcccgggtgg tagggcattg 181 aggcacagtg atgcgtgtct gttggcttgt ggggaaagag aaatgcagtc agcgaatgaa 241 actgccacac ttggaagcag tggtaattgg gcgtggccca gagactggga taactgataa 301 gaagtgttca cggcagcaag ttcagttaaa agcagactgt aacaaggggt atgtcacagt 361 taagcagata ggagtcaacc caactagtgt tgatctcgtg aatattggca aggatgaaga 421 ggtgaaaatg aagccaggcc aagttctgca tattgtgaat aaactttacc cctacacggt 481 gcaatttgct gaagagtcag ggaaaactgt tacagaagca gaaaagaaaa tacaaaccaa 541 caagatgcga cgtgaggtct cctccgagaa tgatgatgta gagcttgtgc ccagaaaaac 601 aatgaagatg gagatggtgg atacacaagg cagttctgca aattccaagc taagcaatac 661 tggtgtatct cctcatgaag gaacttcgag caaaaaggaa catttaggac actggagtca 721 gggtctaaag agctccatgc aagacccaaa aatgcaggtt tataaagatg aaaagactgt 781 agtcatcaag gataaatatc ccaaagcacg ttaccactgg ctcatcttac catgggaccc 841 catttcaagc ctgaagtcag tcaccaggga caatcttgaa ctcctggaac atatgcatgc 901 agttgggcaa aaaatgattg accagtgccc tgccagagag agcctggagt tcagactggg 961 ttaccatgct atccccagca tgagtcagct acatttgcat gtcatcagcc aggattttga 1021 ttctccggcc ctgaaaacca aaaagcactg gaactctttt actacagact acttcttaaa 1081 ctctcaagat gtgatagaga tggtaagaag caagggaaaa gtgatggtga aagatcatgt 1141 ctccgaactt ctcaaattgc ccctcagatg ccatcattgc aaacaacagc tgtccactat 1201 cccacagtta aaggaacatc tcaggaaaca ttggccaaaa tgactttgca aaaaatcctc 1261 ttacaacttg tcttcagact tcaggctaaa acagagacct cgcaatgtta gtggacatgt 1321 atgctttttg ttaaccggaa tgacataagt aagtggggaa aaagtagcct ggaaacagca 1381 gcatactaaa tttgtaatag cttagacaca ccaaaaaaaa aaagtaaaat aaagtgact // LOCUS ICSX01000008 1304 bp mRNA linear TSA 17-NOV-2022 DEFINITION TSA: Grus monacha mRNA, Grmm00008. ACCESSION ICSX01000008 VERSION ICSX01000008.1 DBLINK BioProject:PRJDB7809 Sequence Read Archive:DRR350763 BioSample:SAMD00156792 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Grus monacha (hooded crane) ORGANISM Grus monacha Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus. REFERENCE 1 (bases 1 to 1304) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Direct Submission JOURNAL Submitted (11-NOV-2022) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, Biodiversity Division; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan:Kagoshima REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Japanese Hooded Crane transcriptome shotgun sequence JOURNAL Unpublished (2022) COMMENT ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: Illumina Hiseq ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1304 /cell_type="cultured cells derived from muscle" /collection_date="2017-02-08" /country="Japan:Kagoshima" /db_xref="taxon:40818" /mol_type="mRNA" /organism="Grus monacha" /sex="female" /submitter_seqid="Grmm00008" CDS 56..1108 /codon_start=1 /inference="similar to AA sequence:RefSeq:XP_040511270.1" /product="aprataxin isoform X1" /protein_id="LAH91766.1" /transl_table=1 /translation="MRVCWLVGKEKCSQRMKLPHLEAVVIGRGPETGITDKKCSRQQV QLKADCNKGYVTVKQIGVNPTSVDLVNIGKDEEVKMKPGQVLHIVNKLYPYTVQFAEE SGKTVTEAEKKIQTNKMRREVSSENDDVELVPRKTMKMEMVDTQGSSANSKLSNTGVS PHEGTSSKKEHLGHWSQGLKSSMQDPKMQVYKDEKTVVIKDKYPKARYHWLILPWDPI SSLKSVTRDNLELLEHMHAVGQKMIDQCPARESLEFRLGYHAIPSMSQLHLHVISQDF DSPALKTKKHWNSFTTDYFLNSQDVIEMVRSKGKVMVKDHVSELLKLPLRCHHCKQQL STIPQLKEHLRKHWPK" BASE COUNT 433 a 273 c 312 g 286 t ORIGIN 1 ggggacgggg ccggctcccc ttcaggccgg cggcctgcgg cgccgcggca cagtgatgcg 61 tgtctgttgg cttgtgggga aagagaaatg cagtcagcga atgaaactgc cacacttgga 121 agcagtggta attgggcgtg gcccagagac tgggataact gataagaagt gttcacggca 181 gcaagttcag ttaaaagcag actgtaacaa ggggtatgtc acagttaagc agataggagt 241 caacccaact agtgttgatc tcgtgaatat tggcaaggat gaagaggtga aaatgaagcc 301 aggccaagtt ctgcatattg tgaataaact ttacccctac acggtgcaat ttgctgaaga 361 gtcagggaaa actgttacag aagcagaaaa gaaaatacaa accaacaaga tgcgacgtga 421 ggtctcctcc gagaatgatg atgtagagct tgtgcccaga aaaacaatga agatggagat 481 ggtggataca caaggcagtt ctgcaaattc caagctaagc aatactggtg tatctcctca 541 tgaaggaact tcgagcaaaa aggaacattt aggacactgg agtcagggtc taaagagctc 601 catgcaagac ccaaaaatgc aggtttataa agatgaaaag actgtagtca tcaaggataa 661 atatcccaaa gcacgttacc actggctcat cttaccatgg gaccccattt caagcctgaa 721 gtcagtcacc agggacaatc ttgaactcct ggaacatatg catgcagttg ggcaaaaaat 781 gattgaccag tgccctgcca gagagagcct ggagttcaga ctgggttacc atgctatccc 841 cagcatgagt cagctacatt tgcatgtcat cagccaggat tttgattctc cggccctgaa 901 aaccaaaaag cactggaact cttttactac agactacttc ttaaactctc aagatgtgat 961 agagatggta agaagcaagg gaaaagtgat ggtgaaagat catgtctccg aacttctcaa 1021 attgcccctc agatgccatc attgcaaaca acagctgtcc actatcccac agttaaagga 1081 acatctcagg aaacattggc caaaatgact ttgcaaaaaa tcctcttaca acttgtcttc 1141 agacttcagg ctaaaacaga gacctcgcaa tgttagtgga catgtatgct ttttgttaac 1201 cggaatgaca taagtaagtg gggaaaaagt agcctggaaa cagcagcata ctaaatttgt 1261 aatagcttag acacaccaaa aaaaaaaagt aaaataaagt gact // LOCUS ICSX01000009 2255 bp mRNA linear TSA 17-NOV-2022 DEFINITION TSA: Grus monacha mRNA, Grmm00009. ACCESSION ICSX01000009 VERSION ICSX01000009.1 DBLINK BioProject:PRJDB7809 Sequence Read Archive:DRR350763 BioSample:SAMD00156792 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Grus monacha (hooded crane) ORGANISM Grus monacha Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus. REFERENCE 1 (bases 1 to 2255) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Direct Submission JOURNAL Submitted (11-NOV-2022) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, Biodiversity Division; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan:Kagoshima REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Japanese Hooded Crane transcriptome shotgun sequence JOURNAL Unpublished (2022) COMMENT ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: Illumina Hiseq ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2255 /cell_type="cultured cells derived from muscle" /collection_date="2017-02-08" /country="Japan:Kagoshima" /db_xref="taxon:40818" /mol_type="mRNA" /organism="Grus monacha" /sex="female" /submitter_seqid="Grmm00009" CDS 252..899 /codon_start=1 /inference="similar to AA sequence:RefSeq:XP_015136976.1" /product="ras-related protein Rab-5A isoform X1" /protein_id="LAH91774.1" /transl_table=1 /translation="MANRGATRPNGPNAGNKICQFKLVLLGESAVGKSSLVLRFVKGQ FHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDI TNEESFARAKNWVKELQRQASPNIVIALAGNKADLANKRAVDFQEAQAYADDNSLLFM ETSAKTSMNVNEIFMAIAKKLPKNEPQNAGANSARGRGVDLTEPTQPPKSQCCSN" BASE COUNT 678 a 457 c 440 g 680 t ORIGIN 1 ctctcccgcg ccccgccgag gagccgcctc cccttttccc cctcctccgc ccaccctgcc 61 ccggctcacc cgccagcccc gtcggacgga cagacgtcgc tgcgccgccg cccggctccc 121 cctcctcccc ctcccccgtg cgcggccgcc gtggcccggc caggttgtga ctggcagaag 181 caccactgag atctgaatcc tggaactcgc tttcacaagc ttgaaacaaa ggacttcttt 241 ctaatttggg catggctaat cgaggagcaa caagacccaa tgggccgaat gctgggaata 301 aaatttgcca gttcaaacta gtacttttag gagagtctgc agttggcaaa tcaagtttgg 361 tgcttcgttt tgtaaaagga cagtttcatg agtttcaaga aagtacaatt ggagctgctt 421 ttctaaccca gactgtatgt ctcgatgata caacggtaaa atttgaaatt tgggatacag 481 ctgggcaaga gcggtaccac agtttagcac ccatgtacta cagaggagcg caagcagcta 541 tagtggtata cgacattaca aatgaggagt cctttgccag agcgaaaaat tgggtcaaag 601 aacttcagcg acaagcaagt cctaacattg taatagcttt agcaggaaac aaagctgatc 661 tagctaacaa aagagctgtg gatttccagg aagcacaggc ttatgcagac gacaacagct 721 tattgttcat ggagacgtct gccaaaacat ctatgaacgt aaatgaaata ttcatggcaa 781 ttgcaaaaaa attgcccaag aatgaaccac agaatgcagg agccaactct gccaggggaa 841 gaggagtaga ccttactgaa cccacacaac cacccaagag tcaatgttgt agtaactaaa 901 acatcaattg ctttaaactg ttctgaatat tcttctgctt cctaactgtt aataaccatg 961 gaattggagt gcttaacctg gcccagtaca gcttccaaac agcgaagaga cttatgataa 1021 taatcaagtt catgatacag agttttcttt tgacctaaaa ttttaacatg catgtatcca 1081 ccactggctg taatgtttca gcagtagagg agagatggaa gcggaatgaa cttccttcag 1141 ttgaaaggtt ttaaaaatca cttaccatta ggggtgtaga agaactactt tccatggacc 1201 taattggcca gttcctgtag cctcaatact gattactgtt ataataaata gaattgggac 1261 tttccataat tctcaaatgt gctttaaaac ctttttagaa acagggtcta aaaattactt 1321 aaacttattc acagtattga tgcaaccggt tgtttctgca ggtatctact ctttagttat 1381 acattccata gtttaataat ttaattacaa ataatacttg cattaacaat tttaaaaacc 1441 ctatgcttgc aggaatgtgg agttttagtt ggtacactgt atgtaaatta tatcaaccca 1501 gttagttatc taaaggagtt agtgataaat caagtttaac ttaatttcta atctgttcag 1561 agggtacaga ccagtaaatt caactttgcg acttaggata tgtttttttc ctctgcaaac 1621 tgtaagagct cttcaagtaa aaccacaaca aacttggtgt ctgtgacttc cttcttggtt 1681 ttgatcattg ctggccatta caatttatgt ttttctccta aggaaaaaaa atagtgcact 1741 aacaattatg tacatccaac ttgattttaa atttggatat taatgtactg taaataggta 1801 ctctgcattg tagtctacat ttgtttaata ctttctgtaa tatttaagag ttgcttaaag 1861 gtatacagaa tgtacagtta cttaaagcta actttttttc ctctctaatc aaagggggtt 1921 ctaagttctt cctttatggc tagaacagta ataaatgatg ctcctctatc tgtaacataa 1981 gtactgctgt ctgtcagtta tgaactttgc aactttgttt tccaaagtac attttatttt 2041 gatctgtcca gtatattgca ctaattcttt tagttatttt cattatatga aattaccaag 2101 tgtgtcagaa gagatgaatt agtctattta aatgttgaac tgatagcaga aacttgtgca 2161 gattttaaat ttgcagtaat ctgggtttag caaggaaaat gacagttcac cggtgtttag 2221 ttttatattg aggtgctcag gtttgaataa agtgg // LOCUS ICSX01000010 1696 bp mRNA linear TSA 17-NOV-2022 DEFINITION TSA: Grus monacha mRNA, Grmm00010. ACCESSION ICSX01000010 VERSION ICSX01000010.1 DBLINK BioProject:PRJDB7809 Sequence Read Archive:DRR350763 BioSample:SAMD00156792 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Grus monacha (hooded crane) ORGANISM Grus monacha Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus. REFERENCE 1 (bases 1 to 1696) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Direct Submission JOURNAL Submitted (11-NOV-2022) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, Biodiversity Division; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan:Kagoshima REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Japanese Hooded Crane transcriptome shotgun sequence JOURNAL Unpublished (2022) COMMENT ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: Illumina Hiseq ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1696 /cell_type="cultured cells derived from muscle" /collection_date="2017-02-08" /country="Japan:Kagoshima" /db_xref="taxon:40818" /mol_type="mRNA" /organism="Grus monacha" /sex="female" /submitter_seqid="Grmm00010" CDS 170..340 /codon_start=1 /inference="similar to AA sequence:RefSeq:XP_015136976.1" /product="ras-related protein Rab-5A isoform X1" /protein_id="LAH91783.1" /transl_table=1 /translation="METSAKTSMNVNEIFMAIAKKLPKNEPQNAGANSARGRGVDLTE PTQPPKSQCCSN" BASE COUNT 541 a 280 c 292 g 583 t ORIGIN 1 ttgtcacatg agtgcttcaa caaactttct ttcaaaatgg tatagaaatt gttccttatt 61 agcgataaaa gtacaatgtg attgatcttt ttaatttttt taatgaagta atgcattctt 121 taattttcag gaagcacagg cttatgcaga cgacaacagc ttattgttca tggagacgtc 181 tgccaaaaca tctatgaacg taaatgaaat attcatggca attgcaaaaa aattgcccaa 241 gaatgaacca cagaatgcag gagccaactc tgccagggga agaggagtag accttactga 301 acccacacaa ccacccaaga gtcaatgttg tagtaactaa aacatcaatt gctttaaact 361 gttctgaata ttcttctgct tcctaactgt taataaccat ggaattggag tgcttaacct 421 ggcccagtac agcttccaaa cagcgaagag acttatgata ataatcaagt tcatgataca 481 gagttttctt ttgacctaaa attttaacat gcatgtatcc accactggct gtaatgtttc 541 agcagtagag gagagatgga agcggaatga acttccttca gttgaaaggt tttaaaaatc 601 acttaccatt aggggtgtag aagaactact ttccatggac ctaattggcc agttcctgta 661 gcctcaatac tgattactgt tataataaat agaattggga ctttccataa ttctcaaatg 721 tgctttaaaa cctttttaga aacagggtct aaaaattact taaacttatt cacagtattg 781 atgcaaccgg ttgtttctgc aggtatctac tctttagtta tacattccat agtttaataa 841 tttaattaca aataatactt gcattaacaa ttttaaaaac cctatgcttg caggaatgtg 901 gagttttagt tggtacactg tatgtaaatt atatcaaccc agttagttat ctaaaggagt 961 tagtgataaa tcaagtttaa cttaatttct aatctgttca gagggtacag accagtaaat 1021 tcaactttgc gacttaggat atgttttttt cctctgcaaa ctgtaagagc tcttcaagta 1081 aaaccacaac aaacttggtg tctgtgactt ccttcttggt tttgatcatt gctggccatt 1141 acaatttatg tttttctcct aaggaaaaaa aatagtgcac taacaattat gtacatccaa 1201 cttgatttta aatttggata ttaatgtact gtaaataggt actctgcatt gtagtctaca 1261 tttgtttaat actttctgta atatttaaga gttgcttaaa ggtatacaga atgtacagtt 1321 acttaaagct aacttttttt cctctctaat caaagggggt tctaagttct tcctttatgg 1381 ctagaacagt aataaatgat gctcctctat ctgtaacata agtactgctg tctgtcagtt 1441 atgaactttg caactttgtt ttccaaagta cattttattt tgatctgtcc agtatattgc 1501 actaattctt ttagttattt tcattatatg aaattaccaa gtgtgtcaga agagatgaat 1561 tagtctattt aaatgttgaa ctgatagcag aaacttgtgc agattttaaa tttgcagtaa 1621 tctgggttta gcaaggaaaa tgacagttca ccggtgttta gttttatatt gaggtgctca 1681 ggtttgaata aagtgg //