LOCUS ICPP01000001 357 bp RNA linear TSA 05-FEB-2022 DEFINITION TSA: Hypotaenidia okinawae RNA, GAOK00001. ACCESSION ICPP01000001 VERSION ICPP01000001.1 DBLINK BioProject:PRJDB4707 Sequence Read Archive:DRR299393 BioSample:SAMD00050839 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Hypotaenidia okinawae ORGANISM Hypotaenidia okinawae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rallidae; Hypotaenidia. REFERENCE 1 (bases 1 to 357) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. CONSRTM Environmental Genome Science Research Promotion Project TITLE Direct Submission JOURNAL Submitted (11-MAR-2020) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, CEBES; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Okinawa Rail whole genome shotgun sequence JOURNAL Unpublished (2020) COMMENT Original tissue is stored at our institute ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: HiSeq X Ten ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..357 /geo_loc_name="Japan" /db_xref="taxon:2861861" /dev_stage="matured" /mol_type="transcribed RNA" /organism="Hypotaenidia okinawae" /sex="female" /submitter_seqid="GAOK00001" /tissue_type="cultured fibrobrast" CDS <1..>357 /codon_start=1 /product="B-cell CLL/lymphoma 11B" /protein_id="LAC32645.1" /transl_table=1 /translation="DILVFIEHKRKQCNGTGGACYEKSMDKSSPPPSSRAELRKVSEP VEIGIQVTPDEEDRLLTPTKGICPKQENIAGKDEPSSYICTTCKQPFNSAWFLLQHAQ NTHGFRIYLETSPSNSS" BASE COUNT 107 a 95 c 81 g 74 t ORIGIN 1 gacatcttgg tttttataga gcacaagaga aaacagtgca atggcactgg tggtgcctgc 61 tatgaaaaga gcatggataa gagcagccct cccccctcct cacgcgccga gctcaggaaa 121 gtgtcagagc cagtggaaat cgggatccaa gtcacacccg atgaagaaga ccgtcttctc 181 acgcctacaa aaggaatttg ccccaagcag gagaacattg caggtaaaga tgagccttca 241 agctatattt gcacaacatg caagcagcct tttaatagcg cttggttctt gcttcagcat 301 gcccagaaca cacatggatt ccgcatctac ctggaaacaa gcccttcaaa cagttcc // LOCUS ICPP01000002 1668 bp RNA linear TSA 05-FEB-2022 DEFINITION TSA: Hypotaenidia okinawae RNA, GAOK00002. ACCESSION ICPP01000002 VERSION ICPP01000002.1 DBLINK BioProject:PRJDB4707 Sequence Read Archive:DRR299393 BioSample:SAMD00050839 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Hypotaenidia okinawae ORGANISM Hypotaenidia okinawae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rallidae; Hypotaenidia. REFERENCE 1 (bases 1 to 1668) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. CONSRTM Environmental Genome Science Research Promotion Project TITLE Direct Submission JOURNAL Submitted (11-MAR-2020) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, CEBES; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Okinawa Rail whole genome shotgun sequence JOURNAL Unpublished (2020) COMMENT Original tissue is stored at our institute ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: HiSeq X Ten ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1668 /geo_loc_name="Japan" /db_xref="taxon:2861861" /dev_stage="matured" /mol_type="transcribed RNA" /organism="Hypotaenidia okinawae" /sex="female" /submitter_seqid="GAOK00002" /tissue_type="cultured fibrobrast" CDS <1..1614 /codon_start=1 /product="polycystin 1, transient receptor potential channel interacting" /protein_id="LAC32646.1" /transl_table=1 /translation="ELGASLEESKAQLSFLQQHTWIDNMSRAVFVELMQYNPSVDLHA AITLQLEFLGAGQAIATVTISPFPLLRLSGGVTLQLLMMVFLMMFVVYFVVSESLSIK KEGRAYFTLLRNYGQWVFILLTTCTVVVHLSQATLADQQWLKYLNNRKGFTNFYQVAF LNTVFSTLAASLLFLLTVQAAQQLRFVRQWSVFGKTFQKSAKELAAAGLAFAVLILAY AQLGFLLFSSSSESFRSVGSSLLLLFAMLRGSVHLRPCLPESSGLYYLFCTSYIILEV WIVLRLFTVVLIYSYREMHFELYRPAFEPQDYEMVELFVRRLKMWMGFSKAKEFRHKV RFEGMEPLPSRDSSDSKSFRGPTPSAASDSSRASTSSSQLDGLSLVLSTRDSLEVDAD IQRLLSLFEMLLAQFDRVNQVTEDVYRIEHQLEGSRSRRCRKRYTQVSEDALSRYCAG SAEQGPSPEISSDMDLQPLRDAPLSPRSPATPSGSRGSVPSRLLRASRGISVAASVLP PHKPYAAVAPAVKKKRPLRAKNRVHPAVK" BASE COUNT 300 a 552 c 475 g 341 t ORIGIN 1 gagctggggg cttcactaga ggaaagcaaa gctcagctga gctttcttca gcagcacact 61 tggatcgaca acatgagccg ggcagtcttt gtggagctga tgcagtataa ccccagcgtg 121 gacctgcacg ctgccatcac cctccagctg gagttcctgg gggctggcca ggccattgcc 181 actgtcacca tcagcccctt cccgctgctg cggctcagcg ggggtgtcac actgcagctt 241 ctcatgatgg tcttcctcat gatgtttgtg gtctacttcg tggtgtctga gtcgctgtcc 301 atcaaaaagg aaggcagagc ctacttcacc ctgttgagaa actatggcca gtgggtcttc 361 atcctcctta ccacttgtac cgttgtggtg cacctcagcc aagccaccct tgctgaccaa 421 cagtggctca agtatctcaa caaccgcaaa ggtttcacta acttctacca ggtagccttc 481 ctcaacacag tcttcagcac cttggctgca tccctcctct tcctcctgac tgtgcaggcc 541 gcccagcagc tgcgcttcgt caggcagtgg tctgtgtttg ggaagacctt tcagaagtct 601 gcgaaggagc tggctgctgc agggctggcc ttcgctgtcc tcatcctggc ctacgctcag 661 ctcggcttcc tgctcttctc ctcctcctcg gagtccttcc gcagcgtggg cagcagcctc 721 ctgctgctct tcgccatgct gcgaggcagc gtgcacctcc gtccctgcct gcccgagtcc 781 tcgggcctct actacctgtt ctgcaccagc tacatcatcc tggaggtgtg gattgtgctg 841 aggctcttca ccgtggtgct tatctacagc taccgggaga tgcacttcga gctgtaccgc 901 ccggccttcg agccccagga ctacgagatg gtggagctct ttgtgcgcag gctgaaaatg 961 tggatgggct tcagcaaagc caaggagttc cggcacaagg tgaggttcga agggatggag 1021 ccactgccat cccgagactc cagtgactcc aagtccttcc ggggccccac tcccagcgct 1081 gcctctgaca gctccagggc ctccacctcc tccagccagc tggatgggct gagcctcgtg 1141 ctgagcaccc gggacagcct ggaagtggac gcagacatcc agcgcctcct ttccctcttc 1201 gagatgctgc tcgcccaatt tgaccgggtc aaccaggtga cagaagacgt gtaccgcatc 1261 gagcaccagc tggagggctc tcggagccgc cgctgcagga agaggtacac ccaggtgtcg 1321 gaggacgccc tgagcaggta ctgtgcaggc agcgcagagc aggggccctc acctgagatc 1381 agctccgaca tggacctgca gcccctgcgg gacgccccac tgtccccccg ctctcctgcc 1441 accccatcag gcagcagggg ctccgtgccc agccggctcc ttcgggctag cagaggcatc 1501 agcgtggcgg cttctgtgct gcccccacac aaaccctacg ccgccgtggc tccggcggtg 1561 aagaagaaac ggcccctccg ggccaagaac agggtgcacc ctgctgtcaa gtaagaggcg 1621 gcgtgctggg caccgtgcgg agcaatgccc tcggagggtg gagagcgc // LOCUS ICPP01000003 1149 bp RNA linear TSA 05-FEB-2022 DEFINITION TSA: Hypotaenidia okinawae RNA, GAOK00003. ACCESSION ICPP01000003 VERSION ICPP01000003.1 DBLINK BioProject:PRJDB4707 Sequence Read Archive:DRR299393 BioSample:SAMD00050839 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Hypotaenidia okinawae ORGANISM Hypotaenidia okinawae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rallidae; Hypotaenidia. REFERENCE 1 (bases 1 to 1149) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. CONSRTM Environmental Genome Science Research Promotion Project TITLE Direct Submission JOURNAL Submitted (11-MAR-2020) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, CEBES; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Okinawa Rail whole genome shotgun sequence JOURNAL Unpublished (2020) COMMENT Original tissue is stored at our institute ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: HiSeq X Ten ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1149 /geo_loc_name="Japan" /db_xref="taxon:2861861" /dev_stage="matured" /mol_type="transcribed RNA" /organism="Hypotaenidia okinawae" /sex="female" /submitter_seqid="GAOK00003" /tissue_type="cultured fibrobrast" CDS <1..>1149 /codon_start=2 /product="tripartite motif containing 24" /protein_id="LAC32647.1" /transl_table=1 /translation="QQAQRRAGPVGLPNPRMPGALQQPPASHHAPPRLIHFQNHSPKS NGSAVPAPQMRFPQNQNLPRQAIKPNPLQMAFLAQQAIKQWQIGSGQASAALSTASST MSTPSSPTVTSAVGCDGKTYGPPLIDLSSPVGSSYNLPSLPDIDCSGNITLDNVVRKD GSTEQNQPKPPSNRTVQSPNSSVPSPSPGLSGGVSVTNIHPPIRSPSASSVGSRESSG SSSRPPGADSTHKVPVVMLEPIRIKQESSAPNENFDFPIVVVKQETEEESRPRNATFS RSILTSLLLDSNHNSTSDEAVLRTDAPDSTDDQPGMLQENTSSGKTGWIGPSHIGEGR KEDDPNEDWCAVCQNGGELLCCEKCPKVFHLSCYVPTLMSFPSGEWICT" BASE COUNT 324 a 299 c 268 g 258 t ORIGIN 1 acaacaagct caacgcagag caggtccagt aggtttaccc aatccaagaa tgccaggagc 61 cctccagcaa cctcctgctt ctcatcatgc acctccacgc ttgattcatt ttcagaacca 121 tagccctaag tccaatggtt cagcagttcc tgcaccacag atgagatttc cccaaaatca 181 gaacttgcca aggcaagcca taaagcccaa cccattgcaa atggcattct tggcacaaca 241 ggctataaaa cagtggcaga ttggcagtgg acaagcttca gctgcccttt caactgccag 301 cagcacgatg tctactccat ccagccctac agtgactagt gctgtaggat gtgatgggaa 361 gacatatggt ccccctctga tagatctgag ctctccagtg ggtagctcct ataatctgcc 421 atctcttcct gacattgatt gttcaggaaa catcacactg gataacgttg taaggaagga 481 tggcagtaca gagcagaatc agccaaaacc cccttcaaac agaactgtgc agtcacccaa 541 ttcatcggtg ccatcaccat caccaggcct ctcaggagga gtcagtgtga ctaacataca 601 tcccccaatt cgttcaccca gtgcctccag tgttgggagc agggagagtt ctggctcctc 661 cagcaggcca ccaggagctg attccacaca caaagtcccg gttgttatgt tggagcccat 721 cagaattaaa caggagtcga gtgcaccaaa tgagaacttc gatttcccaa ttgttgtagt 781 gaagcaagaa acggaggagg aatcccggcc tcggaatgcc accttttcaa gaagcatact 841 gacttcgttg ctgttagata gcaatcataa ttccacttct gatgaagctg tcttaagaac 901 agatgcacca gacagcacag atgatcagcc agggatgctg caggaaaaca catccagtgg 961 gaagacagga tggatcgggc cgtcccacat cggggaggga agaaaagagg atgatcccaa 1021 tgaagattgg tgtgctgtat gtcaaaatgg aggggagctc ctttgctgtg agaagtgtcc 1081 caaagtattc catctttctt gttacgtccc tacattgatg agctttccaa gtggagagtg 1141 gatttgcac // LOCUS ICPP01000004 1649 bp RNA linear TSA 05-FEB-2022 DEFINITION TSA: Hypotaenidia okinawae RNA, GAOK00004. ACCESSION ICPP01000004 VERSION ICPP01000004.1 DBLINK BioProject:PRJDB4707 Sequence Read Archive:DRR299393 BioSample:SAMD00050839 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Hypotaenidia okinawae ORGANISM Hypotaenidia okinawae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rallidae; Hypotaenidia. REFERENCE 1 (bases 1 to 1649) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. CONSRTM Environmental Genome Science Research Promotion Project TITLE Direct Submission JOURNAL Submitted (11-MAR-2020) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, CEBES; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Okinawa Rail whole genome shotgun sequence JOURNAL Unpublished (2020) COMMENT Original tissue is stored at our institute ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: HiSeq X Ten ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1649 /geo_loc_name="Japan" /db_xref="taxon:2861861" /dev_stage="matured" /mol_type="transcribed RNA" /organism="Hypotaenidia okinawae" /sex="female" /submitter_seqid="GAOK00004" /tissue_type="cultured fibrobrast" CDS 361..669 /codon_start=1 /product="solute carrier family 6 member 15" /protein_id="LAC32648.1" /transl_table=1 /translation="MPKNSKVVKRELDDEVIESVKDLLSNEDSSDDAFKKSELMVDDQ EEKDVDVEEGSDVEDERPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGKSCDS " BASE COUNT 481 a 323 c 344 g 501 t ORIGIN 1 cgagggctgg gcacatgtgc ctgctgccgt ctcccgcccg ccgctgagct ccgcgtccgc 61 acggcaccgc tcggtacccc gcgcccgcgg ggggacccgg tccccccctt tcctgcgtct 121 ggtgctcggc gaaccccgcg ggcggaggca aggggaggca aggcaaagca aggcaagata 181 ctttcagtag aaaaaacgtt cagaaacaga agtccttaat cttgattccc tggtatcaga 241 ctcttcaggc atcatcttca gtccatttct tcagtatttt tggccaagca gagggacttc 301 agcacttgtc cacctgtctc agctgaactt gacttcctta ctgtttttct aacattacaa 361 atgcctaaga acagcaaggt agtgaaaaga gaactagatg atgaggtcat tgagtcagtt 421 aaggaccttc tctctaatga agactcttcg gatgatgcct ttaagaagag tgaacttatg 481 gttgatgatc aggaagaaaa agatgtagat gtcgaagaag gctcagatgt agaagatgaa 541 agacctgctt ggaacagcaa actccaatat atactggcac aagttggatt ttctgtggga 601 ttggggaatg tgtggcgatt cccatatctg tgtcagaaaa atggtggagg taagtcttgt 661 gatagctagt tgtggctaaa taatgaagct aacctttcag atttcaaggt tagcagagat 721 atccacagta aaacctgctc cagcatgtca ggtttttctt ttaatttctg ccagtgcctg 781 tgaggaaaat cccatatcct ctttattccg ggagacacag ctgttaatat aggtagcaaa 841 ttattctaag attctatttc cttattttag gggagaaagt tcttggtatg accttaacta 901 gtggtcagag taatgggcta agcaaaacac gtgtttatgg agcggttgca ttatttaggg 961 cctggctact gtgctaaagt gttattcata gtacttggat aataaatcaa ggcattaact 1021 ctacatcctc tttgaagacc gaagcagtat ttgttcttaa agatttagtg gtactaagct 1081 tcacaccttt acttttaaat ttctattaga tcctagacca tttgatcaca atttactttc 1141 tgcaaaacca gcaagataac cgtgggagtg aaaaggattt tttcactcat cgtgaataat 1201 ttaaatcatt acatccattt tgttacctca tataattaac tattttccta aataacaggt 1261 tacctttcac ttacgacagt gacatcaagc tgtttgttat ctgtccatct atggtcttga 1321 atgtggtatg aaatatgagg ctggagacct tctttctatg aacacagcat tagtgtttta 1381 tcctaatctg taccgtatcc tactatacta ctttaatgta catcctattg tagctaattg 1441 cttagcagaa ttcaaaacaa atttgtgact ttatatgata caaaaagtga atctgtacta 1501 gagaataaag tacatcattt tattcatgct ggatcttaaa agttgaatga caaatctgat 1561 gaatatagaa atgagcctat agaatataat cagagtgaaa ttttgtaact catttgtttt 1621 ctttcagttc aaacaataaa aatagagcg // LOCUS ICPP01000005 626 bp RNA linear TSA 05-FEB-2022 DEFINITION TSA: Hypotaenidia okinawae RNA, GAOK00005. ACCESSION ICPP01000005 VERSION ICPP01000005.1 DBLINK BioProject:PRJDB4707 Sequence Read Archive:DRR299393 BioSample:SAMD00050839 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Hypotaenidia okinawae ORGANISM Hypotaenidia okinawae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rallidae; Hypotaenidia. REFERENCE 1 (bases 1 to 626) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. CONSRTM Environmental Genome Science Research Promotion Project TITLE Direct Submission JOURNAL Submitted (11-MAR-2020) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, CEBES; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Okinawa Rail whole genome shotgun sequence JOURNAL Unpublished (2020) COMMENT Original tissue is stored at our institute ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: HiSeq X Ten ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..626 /geo_loc_name="Japan" /db_xref="taxon:2861861" /dev_stage="matured" /mol_type="transcribed RNA" /organism="Hypotaenidia okinawae" /sex="female" /submitter_seqid="GAOK00005" /tissue_type="cultured fibrobrast" CDS <1..>626 /codon_start=2 /product="hypothetical protein" /protein_id="LAC32649.1" /transl_table=1 /translation="LLVRYEHNVDSEYLVESSSGKSCKHKEKSKHHQKDFHLEFGEKS SPKIKEEDNSSTFESSEYTLRKIDKEGKTLKKHKLRHKEREKDKHKKEQDGEKEKHKH KDTVKEVQRSIEFDREFWKENFFKSDENEDMLLNIEHESLSSDRKAKLEKAMAKEDKL VKEKQFQKERNAKEEKEKNKKENEKFFKDDKIKDTKEEKEIRLADKDV" BASE COUNT 287 a 70 c 141 g 128 t ORIGIN 1 tctattagtt cggtatgagc acaatgtaga ttctgagtat ctagttgaaa gttctagtgg 61 caaatcttgc aagcacaaag aaaaaagcaa gcatcatcag aaagattttc atttagaatt 121 tggtgaaaaa tctagcccaa aaattaagga ggaagataat agctcaacgt ttgagagctc 181 agagtatact ctgagaaaaa ttgacaagga aggtaaaaca cttaaaaagc ataaattaag 241 acacaaagaa agagaaaagg acaagcacaa aaaggaacag gatggggaga aggagaaaca 301 taaacataaa gacactgtta aggaggttca aagaagcatt gagtttgaca gagaattttg 361 gaaagagaac tttttcaaaa gtgatgaaaa tgaagatatg ttgttaaata tcgaacacga 421 atctctttct tcagacagaa aggcaaagct agaaaaagct atggcaaaag aagataagtt 481 agttaaggag aaacagttcc agaaagagag aaatgctaaa gaggagaaag agaagaacaa 541 aaaggaaaat gagaagtttt tcaaggatga caaaataaaa gatacaaaag aagaaaaaga 601 aatcaggctt gcagataaag atgtgg // LOCUS ICPP01000006 455 bp RNA linear TSA 05-FEB-2022 DEFINITION TSA: Hypotaenidia okinawae RNA, GAOK00006. ACCESSION ICPP01000006 VERSION ICPP01000006.1 DBLINK BioProject:PRJDB4707 Sequence Read Archive:DRR299393 BioSample:SAMD00050839 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Hypotaenidia okinawae ORGANISM Hypotaenidia okinawae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rallidae; Hypotaenidia. REFERENCE 1 (bases 1 to 455) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. CONSRTM Environmental Genome Science Research Promotion Project TITLE Direct Submission JOURNAL Submitted (11-MAR-2020) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, CEBES; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Okinawa Rail whole genome shotgun sequence JOURNAL Unpublished (2020) COMMENT Original tissue is stored at our institute ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: HiSeq X Ten ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..455 /geo_loc_name="Japan" /db_xref="taxon:2861861" /dev_stage="matured" /mol_type="transcribed RNA" /organism="Hypotaenidia okinawae" /sex="female" /submitter_seqid="GAOK00006" /tissue_type="cultured fibrobrast" CDS 2..>455 /codon_start=1 /product="phospholipase C epsilon 1" /protein_id="LAC32650.1" /transl_table=1 /translation="MAQHESSSEYRKVVNRALNIPGCKVVPFCGVFLKELCEVLDGAS SLIRLCPRYNSQNETLEFVSDYSGQDNFLQRAGQDGLNNPEKESTANNIFQTIRSCNR SLESEESEDNFSEGSNSRKNSLKDKTRYQFIIGDLSDSESDIFEQLKEW" BASE COUNT 152 a 76 c 105 g 122 t ORIGIN 1 tatggcgcaa catgaatcat catctgagta caggaaagtg gtcaaccggg cactcaatat 61 cccaggctgt aaagttgttc ctttctgtgg ggtattttta aaagaacttt gtgaagtttt 121 ggatggagca tcaagcctta tcagactgtg tccgcgatat aactcccaga atgaaacatt 181 agagtttgtt tcagattaca gcggacaaga taatttcttg caacgagcag gccaagatgg 241 tttaaataat ccagaaaagg aatcaacagc aaacaatatc ttccaaacta ttcggagctg 301 caatcgcagt ttggagtctg aagagagtga agataatttt agtgaaggga gcaattcaag 361 aaaaaactct ttgaaggaca aaacccggta ccaatttata attggagatc tttcagattc 421 tgaaagtgat atatttgagc agctgaagga gtggg // LOCUS ICPP01000007 306 bp RNA linear TSA 05-FEB-2022 DEFINITION TSA: Hypotaenidia okinawae RNA, GAOK00007. ACCESSION ICPP01000007 VERSION ICPP01000007.1 DBLINK BioProject:PRJDB4707 Sequence Read Archive:DRR299393 BioSample:SAMD00050839 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Hypotaenidia okinawae ORGANISM Hypotaenidia okinawae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rallidae; Hypotaenidia. REFERENCE 1 (bases 1 to 306) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. CONSRTM Environmental Genome Science Research Promotion Project TITLE Direct Submission JOURNAL Submitted (11-MAR-2020) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, CEBES; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Okinawa Rail whole genome shotgun sequence JOURNAL Unpublished (2020) COMMENT Original tissue is stored at our institute ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: HiSeq X Ten ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..306 /geo_loc_name="Japan" /db_xref="taxon:2861861" /dev_stage="matured" /mol_type="transcribed RNA" /organism="Hypotaenidia okinawae" /sex="female" /submitter_seqid="GAOK00007" /tissue_type="cultured fibrobrast" CDS <1..>306 /codon_start=2 /product="5-hydroxytryptamine receptor 2B" /protein_id="LAC32651.1" /transl_table=1 /translation="FILYGSVAAFFIPLAIMIVTYFLTIQVLRKKAYLINKPPQRFTW STVSTVFQRDTTPASSPEKVAMLNGSRKDKTLSSDVPICRTSTIGRKSMQTISNEQRA " BASE COUNT 85 a 88 c 62 g 71 t ORIGIN 1 cttcattctg tacggatcag tggctgcgtt cttcatcccc ctcgctatca tgatagtcac 61 ttatttcctg acaattcaag tgctacgcaa gaaggcctac ttgatcaaca agccacctca 121 gcgtttcact tggtcaacag tgtccacagt atttcagcgt gacacaacac ccgcctcctc 181 accagaaaag gtggccatgc tcaacggctc cagaaaggac aagactttgt ccagtgacgt 241 gcctatctgc agaacatcta cgattgggag gaagtccatg caaacaatat ccaacgaaca 301 aagggc // LOCUS ICPP01000008 513 bp RNA linear TSA 05-FEB-2022 DEFINITION TSA: Hypotaenidia okinawae RNA, GAOK00008. ACCESSION ICPP01000008 VERSION ICPP01000008.1 DBLINK BioProject:PRJDB4707 Sequence Read Archive:DRR299393 BioSample:SAMD00050839 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Hypotaenidia okinawae ORGANISM Hypotaenidia okinawae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rallidae; Hypotaenidia. REFERENCE 1 (bases 1 to 513) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. CONSRTM Environmental Genome Science Research Promotion Project TITLE Direct Submission JOURNAL Submitted (11-MAR-2020) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, CEBES; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Okinawa Rail whole genome shotgun sequence JOURNAL Unpublished (2020) COMMENT Original tissue is stored at our institute ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: HiSeq X Ten ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..513 /geo_loc_name="Japan" /db_xref="taxon:2861861" /dev_stage="matured" /mol_type="transcribed RNA" /organism="Hypotaenidia okinawae" /sex="female" /submitter_seqid="GAOK00008" /tissue_type="cultured fibrobrast" CDS <1..320 /codon_start=3 /product="sterile alpha motif domain containing 13" /protein_id="LAC32652.1" /transl_table=1 /translation="ILPMLAVDMENKENGSLDVKNSVENGRPPDPADWAVIDVVNYFR TAGFEEQANAFQEQEIDGKSLLLMTRNDVLTGLSLKLGPALKIYEYHVKPLQTQHLKN NSL" BASE COUNT 168 a 91 c 108 g 146 t ORIGIN 1 ctatcctccc catgctagct gttgacatgg aaaacaagga aaatggctct ctggatgtca 61 aaaattcggt agagaacggg agacctccgg atcctgctga ctgggccgtt atcgatgtcg 121 tgaattactt cagaacagct ggatttgaag aacaagccaa tgctttccaa gaacaggaaa 181 ttgatggcaa atcattactc ttgatgacaa gaaacgatgt actgactgga ctttcattaa 241 aactggggcc tgcgctgaaa atctatgagt atcacgtcaa acctctacag acacaacatc 301 taaagaacaa ctctttatag cgaattgtct aattggggtc gtgttgtgcc tcaaacaata 361 aataagcaat ttggtttcat gtgatggaac tttgtaaaga gagaatatat cttttaagaa 421 tttaaaccaa attacaatat atatcctatt ggatagagtt ggcaatatac tatatactga 481 gtctgaactg agagaggtgg tgtgtatttt tta // LOCUS ICPP01000009 340 bp RNA linear TSA 05-FEB-2022 DEFINITION TSA: Hypotaenidia okinawae RNA, GAOK00009. ACCESSION ICPP01000009 VERSION ICPP01000009.1 DBLINK BioProject:PRJDB4707 Sequence Read Archive:DRR299393 BioSample:SAMD00050839 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Hypotaenidia okinawae ORGANISM Hypotaenidia okinawae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rallidae; Hypotaenidia. REFERENCE 1 (bases 1 to 340) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. CONSRTM Environmental Genome Science Research Promotion Project TITLE Direct Submission JOURNAL Submitted (11-MAR-2020) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, CEBES; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Okinawa Rail whole genome shotgun sequence JOURNAL Unpublished (2020) COMMENT Original tissue is stored at our institute ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: HiSeq X Ten ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..340 /geo_loc_name="Japan" /db_xref="taxon:2861861" /dev_stage="matured" /mol_type="transcribed RNA" /organism="Hypotaenidia okinawae" /sex="female" /submitter_seqid="GAOK00009" /tissue_type="cultured fibrobrast" CDS <1..>340 /codon_start=3 /product="zinc finger and BTB domain containing 34" /protein_id="LAC32653.1" /transl_table=1 /translation="AVNVGSYGSVLQHVYSFTHASSQAASVSEAFGSLSNTSPSRSML SCFRGGRARQKRVSAGHLHSDVQGLVQGADSESMVSNTGYETSPRERNTRGHWYPYNE RLICIYCGKS" BASE COUNT 83 a 77 c 94 g 86 t ORIGIN 1 tggcagtaaa tgttggttcc tatgggtctg tcttacaaca tgtttattca ttcacccacg 61 cctcgtcaca ggctgccagt gtgtccgaag cctttgggag cttgagcaat acgagtcctt 121 ccaggtcaat gctgagctgc ttcagaggag ggcgtgcacg ccagaaacgg gtatccgctg 181 gtcacctgca tagtgatgtt cagggcttgg ttcagggggc tgacagcgaa tccatggtga 241 gtaacacagg atatgaaact agcccacggg aaagaaatac cagaggccac tggtatccat 301 acaatgagag gctcatttgt atttactgtg gaaagtcttt // LOCUS ICPP01000010 402 bp RNA linear TSA 05-FEB-2022 DEFINITION TSA: Hypotaenidia okinawae RNA, GAOK00010. ACCESSION ICPP01000010 VERSION ICPP01000010.1 DBLINK BioProject:PRJDB4707 Sequence Read Archive:DRR299393 BioSample:SAMD00050839 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Hypotaenidia okinawae ORGANISM Hypotaenidia okinawae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Rallidae; Hypotaenidia. REFERENCE 1 (bases 1 to 402) AUTHORS Nakajima,N., Onuma,M. and Endoh,D. CONSRTM Environmental Genome Science Research Promotion Project TITLE Direct Submission JOURNAL Submitted (11-MAR-2020) to the DDBJ/EMBL/GenBank databases. Contact:Nobuyoshi Nakajima National Institute for Environmental Studies, CEBES; Onogwa 16-2, Tsukuba, Ibaraki 305-8506, Japan REFERENCE 2 AUTHORS Nakajima,N., Onuma,M. and Endoh,D. TITLE Okinawa Rail whole genome shotgun sequence JOURNAL Unpublished (2020) COMMENT Original tissue is stored at our institute ##Assembly-Data-START## Assembly Method :: Trinity v. 2.8.5 Sequencing Technology :: HiSeq X Ten ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..402 /geo_loc_name="Japan" /db_xref="taxon:2861861" /dev_stage="matured" /mol_type="transcribed RNA" /organism="Hypotaenidia okinawae" /sex="female" /submitter_seqid="GAOK00010" /tissue_type="cultured fibrobrast" CDS <1..>402 /codon_start=3 /product="chromosome transmission fidelity factor 18" /protein_id="LAC32654.1" /transl_table=1 /translation="SCLESETSAESPEPTREVGPADEEESAPHCLWVDKFTPRRYVEL LSDDYTNRCLLKWLKLWDTVVFGKEKAVKKAKPSAETHPPFSQPKDQQSKWKTKVQLT EEILEAELDQHKRPKYKVALLCGPPGLGKTT" BASE COUNT 104 a 108 c 126 g 64 t ORIGIN 1 acagttgcct tgagagcgag accagtgcgg agagcccaga gcccaccagg gaagtggggc 61 cggctgacga ggaggagtca gcacctcatt gcctttgggt ggacaagttc actccgcggc 121 gctacgtgga gctgctcagc gatgactata cgaaccgctg ccttctgaag tggctcaagc 181 tctgggacac agtggtgttt gggaaggaga aggctgtgaa gaaggccaag cccagtgctg 241 agactcatcc tccattcagc cagcccaagg accagcagag caagtggaaa accaaggttc 301 agctcacaga ggagattctg gaggctgagc tggaccagca caagagacca aaatacaagg 361 tagccctgct ctgtggccca cccggcttag gaaagaccac gc //