LOCUS HQ247816 2650 bp DNA linear BCT 25-JUL-2016 DEFINITION Klebsiella pneumoniae strain LT12 plasmid pLT12 class I integron, partial sequence. ACCESSION HQ247816 VERSION HQ247816.1 KEYWORDS . SOURCE Klebsiella pneumoniae ORGANISM Klebsiella pneumoniae Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella. REFERENCE 1 (bases 1 to 2650) AUTHORS Partridge,S.R., Thomas,L.C., Ginn,A.N., Wiklendt,A.M., Kyme,P. and Iredell,J.R. TITLE A Novel Gene Cassette, aacA43, in a Plasmid-Borne Class 1 Integron JOURNAL Antimicrob. Agents Chemother. 55 (6), 2979-2982 (2011) PUBMED 21422220 REFERENCE 2 (bases 1 to 2650) AUTHORS Thomas,L.C. and Partridge,S.R. TITLE Direct Submission JOURNAL Submitted (10-SEP-2010) Centre for Infectious Diseases and Microbiology, Westmead Hospital, Level 3, ICPMR Building, Westmead, NSW 2145, Australia FEATURES Location/Qualifiers source 1..2650 /organism="Klebsiella pneumoniae" /mol_type="genomic DNA" /strain="LT12" /isolation_source="hospital patient in Sydney, Australia" /host="Homo sapiens" /db_xref="taxon:573" /plasmid="pLT12" misc_recomb join(554..607,17..22) /note="aadB attC site; IntI-type integrase recombination site" misc_recomb join(1197..1290,608..613) /note="aacA43 attC site; IntI-type integrase recombination site" misc_recomb join(2106..2210,1291..1296) /note="blaOXA-10 attC site; IntI-type integrase recombination site" misc_recomb join(2562..2615,2211..2216) /note="smr2 attC site; IntI-type integrase recombination site" mobile_element <1..>2650 /mobile_element_type="integron:class I" misc_recomb <1..25 /note="attI1; integron-associated recombination site recognized by IntI1" misc_feature <1..16 /note="5'-conserved segment of class 1 integrons" misc_feature 17..607 /note="aadB gene cassette" gene 26..559 /gene="aadB" CDS 26..559 /gene="aadB" /note="confers resistance to gentamicin, kanamycin and tobramycin" /codon_start=1 /transl_table=11 /product="AadB aminoglycoside (2'') adenylyltransferase" /protein_id="AEA07976.1" /translation="MDTTQVTLIHKILAAADERNLPLWIGGGWAIDARLGRVTRKHDD IDLTFPGERRGELEAIVEMLGGRVMEELDYGFLAEIGDELLDCEPAWWADEAYEIAEA PQGSCPEAAEGVIAGRPVRCNSWEAIIWDYFYYADEVPPVDWPTKHIESYRLACTSLG AEKVEVLRAAFRSRYAA" misc_feature 608..1290 /note="aacA43 gene cassette" gene 639..1202 /gene="aacA43" CDS 639..1202 /gene="aacA43" /codon_start=1 /transl_table=11 /product="AacA43 aminoglycoside (6') acetyltransferase" /protein_id="AEA07977.1" /translation="MIYNIINIADSEKNKEDAARILYSAFRGKGKDAWPTLDSAREEI AECIASPNICLGITLDDRLVGWGGLRPMYETTWELHPLVIDPDYQGNGLGRLLLSKIE STATTNRIIGIMLGTDDETLSTSLSMTDIDESNIFQEIKNIINIKNHPFEFYKKCGYI IVGIVPNANGYRKPDIWMWKNLEKKSG" misc_feature 1291..2210 /note="blaOXA-10 gene cassette" gene 1311..2111 /gene="blaOXA-10" CDS 1311..2111 /gene="blaOXA-10" /codon_start=1 /transl_table=11 /product="OXA-10 beta-lactamase" /protein_id="AEA07978.1" /translation="MKTFAAYVIIACLSSTALAGSITENTSWNKEFSAEAVNGVFVLC KSSSKSCATNDLARASKEYLPASTFKIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQW ERDLTLRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLR ISAVNQVEFLESLYLNKLSASKENQLIVKEALVTEAAPEYLVHSKTGFSGVGTESNPG VAWWVGWVEKETEVYFFAFNMDIDNESKLPLRKSIPTKIMESEGIIGG" misc_feature 2211..2615 /note="smr2 gene cassette" gene 2236..2553 /gene="smr2" CDS 2236..2553 /gene="smr2" /note="small multi-drug resistance protein" /codon_start=1 /transl_table=11 /product="Smr2" /protein_id="AEA07979.1" /translation="MAWIYLILAGLFEIGWPVGLKMAQVPETRWSGVGIAVAFMAVSG FLLWLAQRHIPIGTAYAVWTGIGAAGTFLVGVLYYGDPTSVARYFGVALIVAGVITLK LAH" misc_feature 2616..>2650 /note="3'-conserved segment of class 1 integrons" BASE COUNT 719 a 582 c 702 g 647 t ORIGIN 1 tcgccctaaa acaaagttag gccgcatgga cacaacgcag gtcacattga tacacaaaat 61 tctagctgcg gcagatgagc gaaatctgcc gctctggatc ggtgggggct gggcgatcga 121 tgcacggcta gggcgtgtaa cacgcaagca cgatgatatt gatctgacgt ttcccggcga 181 gaggcgcggc gagctcgagg caatagttga aatgctcggc gggcgcgtca tggaggagtt 241 ggactatgga ttcttagcgg agatcgggga tgagttactt gactgcgaac ctgcttggtg 301 ggcagacgaa gcgtatgaaa tcgcggaggc tccgcagggc tcgtgcccag aggcggctga 361 gggcgtcatc gccgggcggc cagtccgttg taacagctgg gaggcgatca tctgggatta 421 cttttactat gccgatgaag taccaccagt ggactggcct acaaagcaca tagagtccta 481 caggctcgca tgcacctcac tcggggcgga aaaggttgag gtcttgcgtg ccgctttcag 541 gtcgcgatat gcggcctaac aattcgtcca agccgacgcc gcttcgcggc gcggcttaac 601 tcaggtgtta gccagacgct tcgcgccgag gacaattgat gatttataac ataattaaca 661 ttgctgattc tgaaaagaac aaggaagacg ctgcacgaat tctatattct gcatttcgcg 721 gaaagggaaa agatgcttgg cctacattag attcagctcg tgaagaaata gcagagtgca 781 tagcaagtcc taatatttgc ttgggcataa ccttagatga tcgcttagta gggtggggcg 841 gacttcgtcc catgtatgaa accacatggg aattgcatcc cttagtaata gatcctgatt 901 atcaaggtaa tggattagga agactgctcc tatcaaagat tgagagcact gcaaccacaa 961 atagaataat tggtataatg cttggaacag atgatgagac attgagtaca agtctttcaa 1021 tgactgatat agatgagtct aatattttcc aagagataaa aaatataatt aatataaaga 1081 atcatccatt tgaattttat aaaaaatgcg ggtacatcat tgtcggtata gtacctaacg 1141 caaatgggta tagaaaacct gacatttgga tgtggaagaa tctagaaaag aaaagtggct 1201 aacaatcgct tcaagcggat aaaacggcgt gtcacggttc ttgcttacgc aagaacacgc 1261 gccacactcg ttttaccgct taagcgtatg ttagccacca agaaggtgcc atgaaaacat 1321 ttgccgcata tgtaattatc gcgtgtcttt cgagtacggc attagctggt tcaattacag 1381 aaaatacgtc ttggaacaaa gagttctctg ccgaagccgt caatggtgtc ttcgtgcttt 1441 gtaaaagtag cagtaaatcc tgcgctacca atgacttagc tcgtgcatca aaggaatatc 1501 ttccagcatc aacatttaag atccccaacg caattatcgg cctagaaact ggtgtcataa 1561 agaatgagca tcaggttttc aaatgggacg gaaagccaag agccatgaag caatgggaaa 1621 gagacttgac cttaagaggg gcaatacaag tttcagctgt tcccgtattt caacaaatcg 1681 ccagagaagt tggcgaagta agaatgcaga aataccttaa aaaattttcc tatggcaacc 1741 agaatatcag tggtggcatt gacaaattct ggttggaagg ccagcttaga atttccgcag 1801 ttaatcaagt ggagtttcta gagtctctat atttaaataa attgtcagca tctaaagaaa 1861 accagctaat agtaaaagag gctttggtaa cggaggcggc acctgaatat ctagtgcatt 1921 caaaaactgg tttttctggt gtgggaactg agtcaaatcc tggtgtcgca tggtgggttg 1981 ggtgggttga gaaggagaca gaggtttact ttttcgcctt taacatggat atagacaacg 2041 aaagtaagtt gccgctaaga aaatccattc ccaccaaaat catggaaagt gagggcatca 2101 ttggtggcta acaagtcgct caaggtcgct ccctgcggtc gctggacagt cccagtcggc 2161 gcatgcttcg cattttatgc gccgcctgtg cctgcccctt agctccaacg ttagcgccca 2221 cgaacggaga tcacgatggc ctggatatac ctgatcctcg ctggactctt tgagattggc 2281 tggcccgtcg gactgaagat ggcgcaggta ccggaaaccc gatggagtgg tgttggcatt 2341 gcggtcgcgt ttatggccgt gagtggcttt ctgctatggc tggctcagcg gcacattccc 2401 atcggtactg cctacgctgt ttggacgggc atcggtgcgg ctggcacctt cctcgtcggc 2461 gttctttact acggagatcc aacatcagtt gcgcggtact ttggcgtggc gctcattgtt 2521 gccggggtca tcacgctcaa gctcgcgcac tgaggtgtgg gcgctaacaa ttcattcaag 2581 ccgaagccgc ttcgcggcgc ggcttaattc gggcgttaga tgcactaagc acattgtaac 2641 ttcacagcca //