LOCUS HQ205950 3587 bp DNA linear HUM 20-JAN-2011 DEFINITION Homo sapiens isolate ACADS_C05 mitochondrial short-chain specific acyl-CoA dehydrogenase gene, complete cds; nuclear gene for mitochondrial product. ACCESSION HQ205950 VERSION HQ205950.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3587) AUTHORS Wang,W., Shen,P., Thiyagarajan,S., Lin,S., Palm,C., Horvath,R., Klopstock,T., Cutler,D., Pique,L., Schrijver,I., Davis,R.W., Mindrinos,M., Speed,T.P. and Scharfe,C. TITLE Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing JOURNAL Nucleic Acids Res. 39 (1), 44-58 (2011) PUBMED 20843780 REFERENCE 2 (bases 1 to 3587) AUTHORS Wang,W., Shen,P., Thiyagarajan,S., Lin,S., Palm,C., Horvath,R., Klopstock,T., Cutler,D., Pique,L., Schrijver,I., Davis,R.W., Mindrinos,M., Speed,T.P. and Scharfe,C. TITLE Direct Submission JOURNAL Submitted (31-AUG-2010) Biochemistry, Stanford University, 855 S California Ave, Palo Alto, CA 94304, USA FEATURES Location/Qualifiers source 1..3587 /organism="Homo sapiens" /mol_type="genomic DNA" /isolate="ACADS_C05" /db_xref="taxon:9606" mRNA join(<66..111,248..411,548..697,918..1029,1399..1550, 1842..2012,2095..2232,2382..2477,2702..2758,2858..>3010) /product="mitochondrial short-chain specific acyl-CoA dehydrogenase" CDS join(66..111,248..411,548..697,918..1029,1399..1550, 1842..2012,2095..2232,2382..2477,2702..2758,2858..3010) /codon_start=1 /product="mitochondrial short-chain specific acyl-CoA dehydrogenase" /protein_id="ADP91818.1" /translation="MAAALLARASGPARRALCPRAWRQLHTIYQSVELPETHQMLLQT CRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAM EEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNG SDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKGISAFLVPMP TPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIA SQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAML KDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYE GTSEIQRLVIAGHLLRSYRS" gap 130..229 /estimated_length=unknown gap 430..529 /estimated_length=unknown variation 657 /replace="c" gap 716..899 /estimated_length=184 gap 1048..1380 /estimated_length=333 gap 1569..1823 /estimated_length=255 variation 1841 /replace="a" gap 2031..2076 /estimated_length=46 gap 2251..2363 /estimated_length=113 variation 2437 /replace="t" gap 2496..2683 /estimated_length=188 gap 2777..2839 /estimated_length=63 BASE COUNT 388 a 699 c 711 g 407 t ORIGIN 1 ccagcactcc ggaacagcgc gctcgcagcg ggaggtcgcg aagcctggga ctgtgtctgt 61 cgcccatggc cgccgcgctg ctcgcccggg cctcgggccc tgcccgcaga ggtgagtgcg 121 ctggggatcn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt tctgcccttg 241 ccggcagctc tctgtcctag ggcctggcgg cagttacaca ccatctacca gtctgtggaa 301 ctgcccgaga cacaccagat gttgctccag acatgccggg actttgccga gaaggagttg 361 tttcccattg cagcccaggt ggataaggaa catctcttcc cagcggctca ggtgagagtg 421 caacctcagn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng tccttccctg 541 tgcccaggtg aagaagatgg gcgggcttgg gcttctggcc atggacgtgc ccgaggagct 601 tggcggtgct ggcctcgatt acctggccta cgccatcgcc atggaggaga tcagccgtgg 661 ctgcgcctcc accggagtca tcatgagtgt caacaacgtg agccccctcc caggcnnnnn 721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt 901 ccccgctgtc ctcctagtct ctctacctgg ggcccatctt gaagtttggc tccaaggagc 961 agaagcaggc gtgggtcacg cctttcacca gtggtgacaa aattggctgc tttgccctca 1021 gcgaaccagg tacctgccct gtcccctnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1381 ctgggtctgt gtgggcaggg aacggcagtg atgcaggagc tgcgtccacc accgcccggg 1441 ccgagggcga ctcatgggtt ctgaatggaa ccaaagcctg gatcaccaat gcctgggagg 1501 cttcggctgc cgtggtcttt gccagcacgg acagagccct gcaaaacaag gtgggcccac 1561 ccagagagnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1801 nnnnnnnnnn nnnnnnnnnn nnnacccgcc tctcctttca gggcatcagt gccttcctgg 1861 tccccatgcc aacgcctggg ctcacgttgg ggaagaaaga agacaagctg ggcatccggg 1921 gctcatccac ggccaacctc atctttgagg actgtcgcat ccccaaggac agcatcctgg 1981 gggagccagg gatgggcttc aagatagcca tggtgagccc ggcagtgggg nnnnnnnnnn 2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnccag ggcggtcccc acagcaaacc 2101 ctggacatgg gccgcatcgg catcgcctcc caggccctgg gcattgccca gaccgccctc 2161 gattgtgctg tgaactacgc tgagaatcgc atggccttcg gggcgcccct caccaagctc 2221 caggtcatcc aggtaatggt ggcagcttta nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2341 nnnnnnnnnn nnnnnnnnnn nnnggggtgg ggctattgca gttcaagttg gcagacatgg 2401 ccctggccct ggagagtgcc cggctgctga cctggcgcgc tgccatgctg aaggataaca 2461 agaagccttt catcaaggtg cccacagggg tccccnnnnn nnnnnnnnnn nnnnnnnnnn 2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnctgtacc cccatgttta 2701 ggaggcagcc atggccaagc tggccgcctc ggaggccgcg accgccatca gccaccaggt 2761 gagtgtccac agtgagnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2821 nnnnnnnnnn nnnnnnnnnc cactgttctc atctcaggcc atccagatcc tgggcggcat 2881 gggctacgtg acagagatgc cggcagagcg gcactaccgc gacgcccgca tcactgagat 2941 ctacgagggc accagcgaaa tccagcggct ggtgatcgcc gggcatctgc tcaggagcta 3001 ccggagctga gcccgcggcg gactgcccca ggactgcggg aaggcgcggg agccaggggc 3061 ctccacccca accccggctc agagactggg cggcccggcg ggggctccct ggggacccca 3121 gatgggctca gtgctgccac ccagatcaga tcacatggga atgaggccct ccgaccattg 3181 gcagctccgc ctctgggcct ttccgcctcc tcaccactgt gcctcaagtt cctcatctaa 3241 gtggccctgg cctcctgggg gcggggttgt gggggggctg agcgacactc agggacacct 3301 cagttgtcct cccgcgggcc ctggtgccct ggcatgaagg cccagtgcga caggcccttg 3361 gtggggtctg tcttttcctt gaggtcagag gtcaggagca gggctggggt caggatgacg 3421 aggcctgggg tcctggtgtt gggcaggtgg tggggctggg ccatggagct ggcccagagg 3481 cccctcagcc ctttgtaaag tctgatgaag gcaggggtgg tgattcatgc tgtgtgactg 3541 actgtgggta ataaacacac ctgtccccca gtctgtgtcc tcgccct //