LOCUS HO633493 802 bp mRNA linear EST 20-JAN-2012
DEFINITION penium_71836_c46923_c Penium margaritaceum EST library Penium
margaritaceum cDNA 5', mRNA sequence.
ACCESSION HO633493
VERSION HO633493.1
DBLINK BioSample: SAMN00169693
KEYWORDS EST.
SOURCE Penium margaritaceum
ORGANISM Penium margaritaceum
Eukaryota; Viridiplantae; Streptophyta; Zygnematophyceae;
Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE 1 (bases 1 to 802)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..802
/organism="Penium margaritaceum"
/mol_type="mRNA"
/strain="SKD-2004, CL-18"
/db_xref="taxon:102169"
/clone_lib="SAMN00169693 Penium margaritaceum EST library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 207 a 177 c 184 g 231 t
ORIGIN
1 caaatatcga tgccaaggtt cttgaggtcg agcttcacaa ggacgactac gcctatgaaa
61 tgtgctttgc atcaggaaat gaggaatatt tgaaggagcg tgggattgtt cacaaggcca
121 tggtatttaa ttttctccct ttgaagaaaa tctatttcca aatagctgat caaattgctg
181 aatccttggg taacttcaca gcagttnacc ccccctgttc gtcgcgggga taaagcggcc
241 aagaaggaac gatggcctca tcttgaccat gatactcggc ctgagcaatt actcagaact
301 ttgcccaaat atgtcagccc tggatccaca atttacatcg gaagtgatga gccgagcagc
361 ttcttttctc ctctaaagga ggtgtacaag ttgyactttg tacaagactt ttcacacttg
421 tgggmaccag gctctgtctg gtttaacaca accaagacta ttcttggaga gaatccgcag
481 tttgaccgct acatgatggt tgcagtcgac tactcggtgt tcgacagggc ttttggacgt
541 gtggagacct tcaatgatct cacatctgat ccacgatgaa gcataatgat cctgtagtga
601 gagatcaatt acagattcta tgctgcgcct gttgatgatt cttagtactt gctatgttag
661 cttatccttg catcatttac taggtttacg ctcaagtttg tgattttgaa aagctggatg
721 aggaaatctg ccttgctttc acaagcaacc agcactgcca gcaaggtctg cttgccagct
781 gcacttggtg aggtcaattg ct
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