LOCUS HO603748 1926 bp mRNA linear EST 19-JAN-2012
DEFINITION penium_71836_c11366_c Penium margaritaceum EST library Penium
margaritaceum cDNA 5', mRNA sequence.
ACCESSION HO603748
VERSION HO603748.1
DBLINK BioSample: SAMN00169693
KEYWORDS EST.
SOURCE Penium margaritaceum
ORGANISM Penium margaritaceum
Eukaryota; Viridiplantae; Streptophyta; Zygnematophyceae;
Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE 1 (bases 1 to 1926)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1926
/organism="Penium margaritaceum"
/mol_type="mRNA"
/strain="SKD-2004, CL-18"
/db_xref="taxon:102169"
/clone_lib="SAMN00169693 Penium margaritaceum EST library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 404 a 531 c 560 g 431 t
ORIGIN
1 aattcccggg atccgcgtga tcgagatcaa cgtcgcgacc gactccaagg cgcgcgttga
61 catcacggag gacaaggaag tgcccgttca gttctcgtac tccgcggggt ggagcgagac
121 agagaagccg ttcgagcggc gcatggacaa gtactcgcgc tactccttcc ttccgcagca
181 cctggagatc cactggttct ccatcatcaa cagctgcgtc accgtgctgc tgctcacggg
241 gtttctggcc accatcctca tgcgcgtgct caagaacgac ttcatcaagt actcgcgtga
301 cgaggagtcg agtgaggagc aggaggagac aggatggaag tacatccacg gtgacgtctt
361 ccgcttccca cctcacaagg acctcttctg cgccgtgctg gggagtggaa cacaactcct
421 tttcctgtcg atcttcatct tcattctggc gctggtgggc gtgttctacc cctacaaccg
481 ggggtgcgct gtggacggcg ctagtggtga tctacgctct cacttccggc atcgcaggct
541 acaccgctgc cgtcttctac aaacagatgg agggcaccaa ctgggtgcgc aacatcacgt
601 tgacgggcgt gcttttctgc ggacccctct tcctcacctt cacgttcctc aacaccgtgg
661 ccatcgcgta cggctcgacc aacgcgaagc cgtttggcac catcgtcgtc atcatcctca
721 tctgggccct catcaccgcg cccctgctgg tgctgggcgg tgtggccggc aagaagagca
781 acgccgagtt ccaggcgccg tgccgcacca ccaagtaccc ccgcgagatc cccaccctgc
841 cgtggtaccg ccgcacgctg cctcaggtgg ccatggctgg attccttcca ttctccgcca
901 tctacatcga gctgtactac atcttcgcca gcgtgtgggg ccacaaagtg tacacgatct
961 acagcatcct cttcatcgtg ttcatcatcc tcatcatcgt caccgccttc atcaccatcg
1021 ccctcaccta cttccaactg gccgtggagg accacgagtg gtggtggagg tcggtggtgt
1081 gcggcgggtc cacgggtctc ttcatcttcg gctactcgtt ctactactac tacgcgcgca
1141 gcgacatgac ggggttcatg cagacgagct tctactttgg cttcatggcc tgcgtgtgct
1201 acggcttctt cctcatgctc ggcaccgtag ggttccgtgc gtcgctgtcg tttgtgcgcc
1261 acatctaccg ctccatcaag tgcgattgag aagaaagggc agaagaggtg atggtggttt
1321 aggtggcggc tcaagagctg gcgacgtgca cggaagcatg gaggcggtgg ttggtggtgt
1381 gagcgcccag cggtgcaaag aaggggagca cgacatccaa ctgcggccaa gaatgcggcg
1441 ggggcacatg gcgagggttg tttgcatttt ccccttgaaa tgagtggtcg atctatcaag
1501 gaaaaatgaa gaagaacaag gtggtggtaa aggagagttg tatttgtagc atgtacaaac
1561 aaagagtatg aaaggcatca gacaaagtca atgtgacgga ctatgttttt ggagatgatg
1621 acattggcgc aggtcgaaga ggtttcattc ggaggtggaa caggtggaag atgtggataa
1681 gggtggaagt tcaccaagtc atgtgagaga acatgcaggg gtataaccaa gtagtgcatg
1741 ctgcgcttgc ctaaccagtc caactggcaa ggcctctagt gcatgactat tctgactggt
1801 gggaggagcg aggatggata gggtgaatct gtgggttttt gggaattcca catactgtct
1861 ggcctttact gcctggcaca caggtctttt tccctcaaaa caaacattga gcaaggcatg
1921 ttcaag
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