LOCUS HO591222 926 bp mRNA linear EST 19-JAN-2012
DEFINITION penium_71836_c11431_c Penium margaritaceum EST library Penium
margaritaceum cDNA 5', mRNA sequence.
ACCESSION HO591222
VERSION HO591222.1
DBLINK BioSample: SAMN00169693
KEYWORDS EST.
SOURCE Penium margaritaceum
ORGANISM Penium margaritaceum
Eukaryota; Viridiplantae; Streptophyta; Zygnematophyceae;
Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE 1 (bases 1 to 926)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..926
/organism="Penium margaritaceum"
/mol_type="mRNA"
/strain="SKD-2004, CL-18"
/db_xref="taxon:102169"
/clone_lib="SAMN00169693 Penium margaritaceum EST library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 184 a 252 c 287 g 202 t
ORIGIN
1 tctcgtggat caagtcctcc acgcagatga tgccgtgctt tccaagaacc ttctcgacga
61 tggcgttgtc agtgagggcg atgcgctgct tgtccacctt gccgtagcca cgcttgtaga
121 tgagctcgcg gatgctcttc atgttggggt agccgtacgt gacgtagggt tcgaccttgt
181 gcagcatgtt cagcgtcgcc ttgttcacct tcatgaacac accgttgaaa atctgcctca
241 accgcagcag ctgaagaatc ttcctcgtct tcgggtgcat gtcgttgata ccgcggatac
301 ggatgacgaa gagcagctta gcctcaggct cgacgtagaa gccgccattg agcttggcct
361 cgcgcttcag ccggatgagg tctttctcct gctgccggta ctccttgatg tactgctctg
421 cgcgcttgaa gatgaccttg cggttggcct tggccttcgc cttcggtcct tcgbccggcc
481 tcgcgcctgc ttagcagctg cccacctgct cgtcgcgctt gcgcttcttc agcaccgact
541 ccggcaccgt ggcagctggc tgtgcgtccg acatggcgcc tcacctcagc gatcgacagc
601 gtcagagtgg ctcaagagcc actacggaga aagaagggca ggatggagag cgttcgaccg
661 acgaaaacag ggaggaggag ggtcgcaccg gtacgagaac gcatgcatca gggaagcaag
721 tggggagcag taatgtgctg ctcctgggta caccacagac gatggaggat cggcaggtaa
781 gagagcagtg gacttgaaca cagtagcaag ctagggaggg aatgcccatg ctgcggatgc
841 agcagtggag cgagcatggc tgttgttcag ctccgcacct tgttcgcaga gatcctgtat
901 ttgaggtgat cgtaagaggg gaagag
//