LOCUS HO586564 1071 bp mRNA linear EST 20-JAN-2012
DEFINITION penium_71836_c56322_c Penium margaritaceum EST library Penium
margaritaceum cDNA 5', mRNA sequence.
ACCESSION HO586564
VERSION HO586564.1
DBLINK BioSample: SAMN00169693
KEYWORDS EST.
SOURCE Penium margaritaceum
ORGANISM Penium margaritaceum
Eukaryota; Viridiplantae; Streptophyta; Zygnematophyceae;
Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE 1 (bases 1 to 1071)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1071
/organism="Penium margaritaceum"
/mol_type="mRNA"
/strain="SKD-2004, CL-18"
/db_xref="taxon:102169"
/clone_lib="SAMN00169693 Penium margaritaceum EST library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 215 a 316 c 309 g 229 t
ORIGIN
1 gcacgccgcg tgtggaccgc ggcattgcac tgcacaagat gtatccgcct catcaccatg
61 gcacttggcg gagagggcta cctcaacttc atgggcaacg agttcggcca cccggagtgg
121 atcgactttc cccgctggga cttcaccacg cccgcgggca agttcatccc gggcaacggc
181 ggcagctacc acctctgccg gcgccgcttc gaccttgccg acgcggacta cctgcgttac
241 aagggtctca attcgttcga tgctgccatg caagcgctgg aggagaagtt caagttcatc
301 agcagcgagc accagtacgt gtcgcgcaag gacgagggcg acaagatgat agtgtttgag
361 aggggcgatc tcgtgtttgt cttcaacttc cactggcaca actcctacac cgactaccgc
421 atcggctgcc tgaaagcccg gaaagtacca ggtggtgctc gactcagacg agggccgctt
481 tggtggattc aaccgcatcg accacaatgc ctccttcttc acagctgagg gttggtacga
541 cggccgaccc aactcattcc aggtgtatgc tcccgcacgc acagcagttg tgtacggacc
601 cgccgacttc gtcgaccccc tccaggagtt ttgcgaggca actccggagg cagacgagtg
661 cagggagtat gaggactgag tggcagcagc agtggctctg tgcgagcgtg cagcaacaac
721 acttgaacca cacccttgtg gagacaggac cccccagctt ggggacggga caatgtgggg
781 gtgacccctc cagggggtgc agtaccccat gtactcatgc taaaatgtcc gggcggttgt
841 gttgtgaaac gatgtggacc tcatttcctc cttggtgtgt ccactggccg gtgayatcaa
901 tgtcgcacat ggccattcta actttgagcc cttctcatgc attggagagg ggtcatctct
961 tgtacttacc ttgtattgat tccggcccag gtgctgtctg tacttgctgg ggcatcaaaa
1021 gatggtctgt ccyttctgca cttgcctgga gagcacaggg cccctcttga c
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