LOCUS HO582003 1528 bp mRNA linear EST 20-JAN-2012
DEFINITION penium_71836_c39893_c Penium margaritaceum EST library Penium
margaritaceum cDNA 5', mRNA sequence.
ACCESSION HO582003
VERSION HO582003.1
DBLINK BioSample: SAMN00169693
KEYWORDS EST.
SOURCE Penium margaritaceum
ORGANISM Penium margaritaceum
Eukaryota; Viridiplantae; Streptophyta; Zygnematophyceae;
Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE 1 (bases 1 to 1528)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1528
/organism="Penium margaritaceum"
/mol_type="mRNA"
/strain="SKD-2004, CL-18"
/db_xref="taxon:102169"
/clone_lib="SAMN00169693 Penium margaritaceum EST library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 298 a 416 c 451 g 356 t
ORIGIN
1 cgggatgacg tttctcgctc agacgttrwt tsccrsswcg ttgctcaacg tcagcaccac
61 caccttcaga caagaagttg cgaggtactg ccgaaacgtg gagatgtgtc ggctgacgga
121 gcaggtgatc ttcacggagc cgtacacgct ggccaagaac aaccgctgga cgtcgccgca
181 gctcgacgac gacgcgaaag ccgtgaggga ggactcggag ctcaaagtgg ccgtcgccga
241 actcaagacc aagttctgtg agaaggcaga ggcgctgatc catgcagacc tccacacggg
301 ttcgataatg gcgacgccgg agtccaccaa agtgatagac ccagagtttg cgttctacgg
361 ccccatgggg ttcgacatcg gcgctttcct cggaaacctc ctccttgcct acttcagcca
421 ggacggccac gcgaagcaaa cttcagagaa tcgcactgac tttaaacggt ggcttctgtc
481 ggccgttgtg gcgacatgga cgctattcga agacaaattc gtcgatctgt ggaacgccgc
541 cgctaaggaa gacaggcttg gcgacttgta cccgggcgcc gtttttgcag agcccctcga
601 acgcatcgcc gcgcagaagg cgtacatgag gactcttctg tccgactccc tcggatttgc
661 tggggccaaa atgatccggc gcatcgtcgg catcgctcac gtcgaggaca tggagtctat
721 cgaggacgcc gacgagcgtg caaagtgcga acgacgggcg ctcaactttg gcaaacgcct
781 cgtgaaggag cgctctgcct tcgacggcat cgctgccgtg gctgctgcag ctgccgctgc
841 gctggagtag ggcggatgag ggcggtcccg tttccattga cacggaggca ttggcaacgg
901 gtctgttcgc ttgccaagcg tttgtcggcg tcgctgctga ggctgcagct gccaccacgg
961 gactgcatcg gtgttggtga gggcgttcct ttgaagaggg gcattaacct gttgaatgca
1021 aggaagggat ggtggacgac acgaccgggt tttcagtgac aacggttatg gctgtgtgcc
1081 aggactttcc aaggggcaga ccacacttga cagcatcggt gatgtgtcag ctcgtggcgc
1141 gatggctgct tgctgcgcct gtggttgctg gctgtgctgc tgctgctgct gctgctgctg
1201 ctgctgcttc tcctggcatc tgcaacggca gctggacggc gcagagtcgc tgagcagcat
1261 tttaggggct ggactcggtt cagcgaggag ttcaagagtt gagtacgtca tttgtttcga
1321 agacggacaa agttttcttt gagttgtgct ctcttcaagt ccaagccatc tcctctccct
1381 tgcatattca attatcacat tgaatctcta cgctcttgtc ctcgtgcccc tcttccagtc
1441 tgccacatgc ctgccttgtc catagttgga atgctgtttt gaattttttg tctattgttc
1501 attctaagtt cggttcatac ttaaaact
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