LOCUS HO578031 1005 bp mRNA linear EST 20-JAN-2012
DEFINITION penium_71836_c11669_c Penium margaritaceum EST library Penium
margaritaceum cDNA 5', mRNA sequence.
ACCESSION HO578031
VERSION HO578031.1
DBLINK BioSample: SAMN00169693
KEYWORDS EST.
SOURCE Penium margaritaceum
ORGANISM Penium margaritaceum
Eukaryota; Viridiplantae; Streptophyta; Zygnematophyceae;
Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE 1 (bases 1 to 1005)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1005
/organism="Penium margaritaceum"
/mol_type="mRNA"
/strain="SKD-2004, CL-18"
/db_xref="taxon:102169"
/clone_lib="SAMN00169693 Penium margaritaceum EST library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 178 a 289 c 364 g 172 t
ORIGIN
1 acgtaattcg ttgccttctc attttgaggc attcatgagt gagtggtggg gggcggaggg
61 aggaggctgg aggcgtgacg agggatgagg aaggaaatga gatggaggag gaaggaggtg
121 tgagggaaga agatggggct gagagatcag aggaagaagc ggcgcccctc gcatcaccca
181 cgtggattcc acactccgtc ttgtcgctcc cgtcccggtt gcggagtccc tggaaccttc
241 cggatcgctc gccaccatac tcaaaccaac gctccctggg cacaggcagg gtggtctgca
301 cgtcgccaat gctggggaag ccgtccttgt gcagagggtg gcccgggacg ccgtgccgct
361 ccaagtacgc gaagcagtcc cggaactccc agtaggccag gggctggacc ttggccatgt
421 cccccccgcc ggcggtctca aagacctcga ggtgggccct ctcggcgccg tggtcgcgcc
481 tccgtccatt gatcatggcg tcgacgcgga gcgaggtgag cgcgcggccg aacggctcga
541 ccttgcacac gcggtcgtac tcgtcgatgt cgcggatgaa gaggtccgaa ccgtggacct
601 cctggtactc ctgcttcgtg gacacgcctg cggcgtggaa cacgtgggac ttgaacccat
661 acctttcctc gcactcggag aggaaggcgt acgtctccgg gaagaggtgg aatgtgtcga
721 tgaagatgac cttcacgcgt ccatcctgga gcgcgccaag gcggtgaagg aggtggagga
781 tgacgacgtc gccggcgatg agggcgcaag ggaacgcggg ccggctgaag ccttccacgg
841 tcttgcggag aacgcccagc gcctggtcct ccagctgctg ccgacggagg gagaggaact
901 cttcgttcca cgcctcgatg gcttcgctcg tgggggssgc tgcagcggct ggcgccgcgg
961 cgttgccgtt ggcgctggcc tgggcgacga gtgcacggga ctgcg
//