LOCUS HO562159 2194 bp mRNA linear EST 19-JAN-2012
DEFINITION nitella_74953_c10160_c Nitella hyalina EST library Nitella hyalina
cDNA 5', mRNA sequence.
ACCESSION HO562159
VERSION HO562159.1
DBLINK BioSample: SAMN00169692
KEYWORDS EST.
SOURCE Nitella hyalina
ORGANISM Nitella hyalina
Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
Characeae; Nitella.
REFERENCE 1 (bases 1 to 2194)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..2194
/organism="Nitella hyalina"
/mol_type="mRNA"
/strain="KGK0190"
/db_xref="taxon:181804"
/clone_lib="SAMN00169692 Nitella hyalina EST library"
/dev_stage="all stages"
/note="Culture harvested from various time points during
the day and across the life cycle."
BASE COUNT 515 a 440 c 555 g 678 t
ORIGIN
1 atgcattgat cgatgggcgc atttgaataa gcatctgcga agattccatc cagctgaacc
61 tctggctccg ctcagtggta aagagcctgc agatgtgctg gaggagatta cgaccggcac
121 cgaggctggt gcatgtttcg ggttgtcagc agcgatggct agaacaggat tccttttagc
181 tcagagtggt tattccacgg cgtgcatacc ggttggaatc gcatgcagca tctctctcag
241 cagtggtggt ttcttttgtc agaccagagg tttgaaagaa gggcgagctg tagttgtgtc
301 aacctgtgca gccgttgctt caattgttac gggagttctc gtgggaatga ttgctttggg
361 agaatcactc ccacgctcac ttttgcttcg atgtattcga ttttttagct ggactttgat
421 tatcggtggg atcgtccttc ttgtaaatat gggtagacca acaatgatga ggcgattcgc
481 ccggcgcagt acggtttggt ttcggccacg ggcaaaccag cgtactatac catcgacgaa
541 tccaacacaa tagacgtagc atttttagtg gccgcacgcg attaacgaca ttgcggatgt
601 tcgttcatca aacaaaacta acaccattgt caatcagtgg ttgtgtagag gcgtatgtat
661 tatcgtgcga atttaatgtt gtattcattg gaatgtcaat gtttactctc tgtgttcaca
721 aatagggggt gaatagagca gagcccgtta ttctttttat cagcatggca gacccatctt
781 tcatcgtttt taacaagatt ttgagtgctt tctaatttga cttagtccgg acggtttgat
841 tgaggacgtg tttgatcgat ttgattctcc agcattagta acgtctatcg tcacccggtt
901 ggttgcccta tgctactatt tgcggccagt gtttcctaat ttggcaatgg ttgggcgatg
961 gaacagactc tgcttggata agccatggtg tccacttctg gctatggagc aagtgggccc
1021 atggaaatcg cagctgttct aatatgtttg ctggcgttgt gaatttccat cgccgyaaag
1081 cgatgcgygc aaccccctca gcttgcgtga gcaaaattat gaaagcgatg cgatctgcct
1141 tcacaaggtt ctgtgtggat gatcatagct ttctctccac ctgctcacag tgagtatgat
1201 cagtgtgttt gtaacactgg tgtagtatct tcatcagtta ggtgaagtca ttasgcttgt
1261 gacgtctatt ccgggaatgg cacggcaata acaggaagaa gaggcttkgc atacctgtct
1321 acgaggggta atagcatctt ccatttgcac cttcttgtta tgcatrccgc agtgctaaaa
1381 taattttcag caaagagttc tgttgcttag tagactctct atagttcaaa gcgaccaggt
1441 ggcctgaagc gaatacgctt catcgcgagy gttgctcaag ctgggtgttc gtgcgtttca
1501 gggcttcaca attcaggagg ctcgtattga tgttgatgtt gttgtggtgt cagttttgtg
1561 ttcttgagaa gttgtctggg ggcgttacta gtttaactaa gcattgactt gcagccaggt
1621 aggggttttg aatgtagcac agtggaggtt catcctgagg tttactatat ttttgtaacc
1681 tcgcctatgt atgattatgt tatttttgca gaagtccttt ccgacaccga agccatgata
1741 cgatacgacc gcaataaaaa tcttcgcgct agaggatctg gtcacaaatg ctcataataa
1801 tccctgataa aaataatcca catggtggtc aacggtcatg ccatcaaact agtttgtctt
1861 ctcgtcttgg caaagtcccg gacatcgttc gcttacaact cctttgatga ataagagcaa
1921 gatatgtgga gtcactcact gaagtgacag tgagtgtggc ttggcagttg tttcagtgtc
1981 aacagcatga gcatgcgaag aaggatacag atggtgtctt ctgtttcagc tttcaggccc
2041 agaagctgtt tgtgtctttg agtttgatgt ttgtgtttgt tcgttggaca gcattcaatg
2101 ctttaaggtt tatttaatct gttagaagat caaacagcac taaagaggag gaggttgcat
2161 gactcgatgt ttctttgaat ttgaatcttc tctc
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