LOCUS HO542007 1155 bp mRNA linear EST 19-JAN-2012
DEFINITION nitella_74953_c11641_c Nitella hyalina EST library Nitella hyalina
cDNA 5', mRNA sequence.
ACCESSION HO542007
VERSION HO542007.1
DBLINK BioSample: SAMN00169692
KEYWORDS EST.
SOURCE Nitella hyalina
ORGANISM Nitella hyalina
Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
Characeae; Nitella.
REFERENCE 1 (bases 1 to 1155)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1155
/organism="Nitella hyalina"
/mol_type="mRNA"
/strain="KGK0190"
/db_xref="taxon:181804"
/clone_lib="SAMN00169692 Nitella hyalina EST library"
/dev_stage="all stages"
/note="Culture harvested from various time points during
the day and across the life cycle."
BASE COUNT 308 a 241 c 299 g 307 t
ORIGIN
1 tggaagaggg tcagattcag tgagcgaggg aagggctgag ctcacagcct caccggtccc
61 accggactca gtgaaagctc gggcgccgaa cagtgaaagc tcagtgaagg acggtgcgga
121 gatctgaaaa gaaactctta attcgaatat agtacacgtc cagaattagg tagtagaata
181 tgcttttctg acttttacgc tcgacaagaa actcttaatt cgaatatagt acacgtccag
241 aattacttag tagaatatgc ttttttgatt tctttctaca ctcgaagtag taatttgtcc
301 ggaagacggt gtggaggtcg tttccaccac acgtctagac tagtgtgcct tgtattttga
361 ctgcgttttt tgaattctcg caaacttgca cgattcaaga gtccgtaaga cggtgtggtg
421 aatttggagt tctcgaaaaa atgacttcta gcacacgata tgttttgtat tttgctgtag
481 ttcaaatctg aagtcactgt gaacagtgtg aagtatacct gccatctagg gatcttgcat
541 cgagcacaac tccgagtccc agacgttagt gactctatgt agtctttgtc tcgataatac
601 atcgtcgtca acagcattgc tctgcgaagg tggagtgagt actacgcagt tggaagacta
661 catggaatag agcggagaat agtagccgct ctgttttagc atagcagaaa gaaacagatc
721 gtcatggggt tgtattccac agcatttact agacagggcc agattgccta ggtccatatt
781 agactccata agcttggcct aaaagcctaa cccaatcggc ccacagggtt gacggtttgg
841 atccgtcaga gtctcagaga gcgggcaatt gcaccggttg aaaacagtgt tcatcagttg
901 aaaaaaacat ctctctacag taagggcaag tttccatcac ccttcttgtc ggttgtccga
961 aaatcgatgt gccgcgcgat gcgccatcgc tagacacctt ggagatgtgg gagagtgaac
1021 gctgttcgga ttgttgggtg gaaaggtgtc ccccctgctg atgaggcgga gtggatccct
1081 ccgaaacgcg tccagggagg ctggatgacg aattgtggga catgagtact ttttcagaac
1141 acatttagat ttgag
//