LOCUS HO538323 1562 bp mRNA linear EST 19-JAN-2012
DEFINITION nitella_74953_c12561_c Nitella hyalina EST library Nitella hyalina
cDNA 5', mRNA sequence.
ACCESSION HO538323
VERSION HO538323.1
DBLINK BioSample: SAMN00169692
KEYWORDS EST.
SOURCE Nitella hyalina
ORGANISM Nitella hyalina
Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
Characeae; Nitella.
REFERENCE 1 (bases 1 to 1562)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1562
/organism="Nitella hyalina"
/mol_type="mRNA"
/strain="KGK0190"
/db_xref="taxon:181804"
/clone_lib="SAMN00169692 Nitella hyalina EST library"
/dev_stage="all stages"
/note="Culture harvested from various time points during
the day and across the life cycle."
BASE COUNT 414 a 326 c 384 g 432 t
ORIGIN
1 cctacattat cctttcgaaa ggacttattg caggcaccat ctatcctaac ctggtagaac
61 atatgtcgga wttcatggcc aggaccttgt tctttacttc attgttggcg atgaagagca
121 gtgagcacaa agaagccgtg gcgaagtttt gtctgaattc tgaaatgtgt agattgacag
181 agaatgtcat attcaaagag ccttatatga atgcaacgaa caatcgatgg acatcgccac
241 aactagatga ggatgtcttt gcactttgga aagatgtcaa ggtgaagctg gcgatcgcgg
301 agctgaaaac gaagttctgc gagcgtacac aagcgctcat tcatggtgat ctccacactg
361 gatcaatcat ggtcacacag acgtccacac aagttatcga tccagagttt gctttctatg
421 gcccaatggg tttcgacatt ggcgcttacc tcggtaattt gatgctctca tatctcagtc
481 aggaaggcca cgccacatcc gacaagcctc gcgacagctt caagtcatgg ctgttgacgg
541 caatcgcaga cacgtggaac ctttttgcgc acaaatttct ctcgctttgg aatgagaacg
601 cgatggctgg agatgcgtat ccggcaatgc tttatcacga ggatgaggat gggmtgagra
661 ttttgcaaga agcrtttata caagakcttc ttgaagatac tttagggttt gcagcmgcca
721 acatgatccg tagaatagtc ggcattgcac atgtgatcga cctggagcag atcaaggatg
781 ctgatgcacg cgcagtgtgc gaaaggcgtg tactgaagtt cggaagggcg ctcatggtcc
841 aaagaaagac gtttgcctca atcaaggaag ttgtgcagac gttgaagatg gccgagttag
901 actagccgtc ggatgattgt cctgatctag agcgtgcacg agtaagacag cttgctgata
961 atgccggagt ggtctatata tactgtagca aaagtccatc cattcgccca acggcccaag
1021 ccagttgctg aaacctgatg ccgttacaac acgatcggat cctttgcgac tttgatgaag
1081 cagcagaggg ccaatatcga aatttcgagg cacggaggat gataagttta taaccaaatt
1141 tcgcgcccat gtgtcattca ctcatctgga tcgcttccat ctatagaccg cagttccatt
1201 cgtgtacaga aaacaatgta gagaaatatt taacgcgggg tttgaaccca cgaccttggc
1261 acagagttgt acaataatta gcagtaggat ttgacttgag atctgtagta gattaggaga
1321 taggcttgat ctgtttcagg gttttccttt tatggtgaaa aaggatgcag tcattatggt
1381 cacttttgtc agtagtttag ttcatattta ttcaatctca tatatgtctg aggatccttt
1441 tttcccttga ttcatgtgct atttatcgtg tttttccagg atcagttgat cagttgtttc
1501 ccattgtctg gaagttgaag cctcgcgcat gaagtcgaag tgcgctttaa agcttttgga
1561 ct
//