LOCUS HO472901 1216 bp mRNA linear EST 19-JAN-2012
DEFINITION klebsormidium_60434_c13371_c Klebsormidium flaccidum EST library
Klebsormidium flaccidum cDNA 5', mRNA sequence.
ACCESSION HO472901
VERSION HO472901.1
DBLINK BioSample: SAMN00169691
KEYWORDS EST.
SOURCE Klebsormidium flaccidum
ORGANISM Klebsormidium flaccidum
Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae;
Klebsormidiales; Klebsormidiaceae; Klebsormidium.
REFERENCE 1 (bases 1 to 1216)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1216
/organism="Klebsormidium flaccidum"
/mol_type="mRNA"
/strain="UTEX 321"
/db_xref="taxon:3175"
/clone_lib="SAMN00169691 Klebsormidium flaccidum EST
library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 300 a 342 c 287 g 287 t
ORIGIN
1 gcgttcattt gcaagtagac ctccgataga ttctcccgcc ttcaaccaat gactgtatct
61 gtagaatcgc ccccttccgt ccttcgcaaa gtcaagaggt ttggctgctg aaattctcag
121 cccatcacaa gtcgatagac cttggttaag caattgacgg ctgcttatcc tccgtttctt
181 tcgctgtagt gcaaatgtcc cgttttcaat catggccacg gcaagagata tatttgcaaa
241 acagttgtcc acatcccaag aaagtctggt tgtaggccaa caaatgcgca accacgctgc
301 gttacctgcg ccgaaatcca gcatcgagct ctgaactctt atttgcaaac agagagcaga
361 agtctccgct ttgtcagtac ttcagggtta gatgtgtaac caattctgag caaccttgta
421 ttcgccgcag gacaagctcc ccccctccaa accccgccat gtcagcggcc tttcaagtcc
481 ccgaagaaat cctacaaggc gtcgctgcgg gagtcgatct ctttgacagc gcctaccctc
541 tatcactaac cctcgccggg ttagcaatga cctttccggt cagtcatgag tccccggaag
601 tagggtcagc ggacggaatc ggaagcagcg gagcaacgga aggcgaggga cccgccttgg
661 gggcggactg ctcgaagctg aacctgctgt ccctggctct cagagaggat ccgcgcccgc
721 tgctccccgg ctgccagtgt tacacgtgtc ggaatcacac acgggcgtat ttacaccacc
781 tcctgaacgc gcacgagatg ctcgcgcaag tgctcctcga aatccataac acacaccact
841 acactcgatt ctttcgggcg attcggcagt ccatcattga ggacaggttt gacaggtttc
901 ggcaagcttt tgttgacaga tgtagaacga ctcaaataga cgtaaagcca atggcaccga
961 aaccatctgg gagaacttct cgcatagatg gagtccatga actggaaaaa tgctaagcca
1021 tccttatccc tttaattgtt agtacctcgg aagcacgcgt tgagccattg tatctatctt
1081 acacacgaca aggttccttt gcgaataaga gatccatagg taagacggct tcaggccgtg
1141 caagccagtc tgcaacaggt atctacgtca tcacgttgga ttttgagcac ttgtattcta
1201 cggaagtggt acacgt
//