LOCUS HO440448 1149 bp mRNA linear EST 19-JAN-2012
DEFINITION klebsormidium_60434_c11495_c Klebsormidium flaccidum EST library
Klebsormidium flaccidum cDNA 5', mRNA sequence.
ACCESSION HO440448
VERSION HO440448.1
DBLINK BioSample: SAMN00169691
KEYWORDS EST.
SOURCE Klebsormidium flaccidum
ORGANISM Klebsormidium flaccidum
Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae;
Klebsormidiales; Klebsormidiaceae; Klebsormidium.
REFERENCE 1 (bases 1 to 1149)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1149
/organism="Klebsormidium flaccidum"
/mol_type="mRNA"
/strain="UTEX 321"
/db_xref="taxon:3175"
/clone_lib="SAMN00169691 Klebsormidium flaccidum EST
library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 289 a 234 c 305 g 320 t
ORIGIN
1 atatatcgtt tgtttcttga attgttcttc aatttggagt gaaattcaga gttcttgact
61 tgagtgcgtg aggggatagg tgatactaga aatgaattgg atggatgaag gtatagctga
121 tacaagaggc tttgaaacgc ctttgagttc aggtctatat ctgaggcgtc tttgttcatt
181 tgaggccctt ctatcgtctt caaacatcga aactgtccac cagaagtgga acttttgtgg
241 tacatttggt agacagatct tgtcctgcgg tgatcatgta agagctggca cttttaatcc
301 ttctgtacaa gttcatgaca actgaagtct caaatgggtt tttctgctca gggtttaagg
361 gatatcacgc cattctggtc tggttgattt gttttgggtc ccggaaacga tgcctaaggc
421 taagagaagg cttcaaccag gcctaaggtt aaaagaaggc cgaggtcctt aggctaagag
481 aaggcctcaa ccagccggtg gccattgatt gcgtgcttga tatcagtttg tttgaatcga
541 ccagaatcac aagtcgcatg caaggtctta caaccttcag ctacatattt cgcaggactt
601 cttcaatcca gcagcctctc atcctccctg tttggttcgt gcctgccgtt gtgtccttca
661 acctggcttg gagcattccc ggaggcagcg tccttgccaa gctggccacg gctgttgggg
721 ggccctttga gcgccatcct cagcgtgttg gtgagcaaga agttcaaccc ggatcctgtt
781 gaggtgctca aggagcggct gactcggctg gagaagaagc aggatctgga gaaggatgtg
841 tacagtcagg tgttcgaact catctacagt gacgcgaagg cacgcgagga gctgcttttc
901 ttttcaaaat ttagcaaaga cgacgaggag ttccggttag cctgtaaagt cttcgtgagc
961 aacaggtcga gtgactaaca aagagtgcac aatcacggga aaaaagacag tgtccgctac
1021 atatatctrt tcaatgatga tggggtgaca tctaaatgtg ctacgttttg tgcaagttta
1081 ccataagtta gtggaagtgt acaatgagca cgtgtatagt agatcgtgga ttcgaacggt
1141 aaaacaagc
//