LOCUS       HG805938              122544 bp    DNA     linear   CON 17-SEP-2015
DEFINITION  Trichuris trichiura genomic scaffold, TTRE_000130.
ACCESSION   HG805938 CBXK01000000 CBXK000000000 CBXK010000000
VERSION     HG805938.1
DBLINK      BioProject:PRJEB535
            BioSample:SAMEA3138987
KEYWORDS    .
SOURCE      Trichuris trichiura (human whipworm)
  ORGANISM  Trichuris trichiura
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
            Trichinellida; Trichuridae; Trichuris.
REFERENCE   1  (bases 1 to 122544)
  AUTHORS   Aslett M.
  JOURNAL   Submitted (23-JAN-2014) to the INSDC. Pathogen Sequencing Unit,
            Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus,
            Hinxton, CambridgeCambridgeshire. CB10 1SA, UNITED KINGDOM.
REFERENCE   2
  AUTHORS   Foth B.J., Tsai I.J., Reid A.J., Bancroft A.J., Nichol S.,
            Tracey A., Holroyd N., Cotton J.A., Stanley E.J., Zarowiecki M.,
            Liu J.Z., Huckvale T., Cooper P.J., Grencis R.K., Berriman M.
  TITLE     The whipworm genome and dual-species transcriptomics of an intimate
            host-pathogen interaction
  JOURNAL   Unpublished.
FEATURES             Location/Qualifiers
     source          1..122544
                     /organism="Trichuris trichiura"
                     /mol_type="genomic DNA"
                     /note="TTRE_000130"
                     /db_xref="taxon:36087"
     CDS             complement(join(1533..1584,1645..1811,1874..1946,
                     2002..2123,2170..2286,2336..2413,2468..2584,2633..2755,
                     2856..2885))
                     /codon_start=1
                     /locus_tag="TTRE_0000339701"
                     /product="aldo keto reductase"
                     /db_xref="GOA:A0A077Z4V1"
                     /db_xref="InterPro:IPR018170"
                     /db_xref="InterPro:IPR020471"
                     /db_xref="InterPro:IPR023210"
                     /db_xref="InterPro:IPR036812"
                     /db_xref="UniProtKB/TrEMBL:A0A077Z4V1"
                     /protein_id="CDW55126.1"
                     /translation="MPMIGYGTYTIGYRHIDTAYIYNNEDIVGEVLSNWLASGRIKRE
                     ELFVTTKLPGFSHRKADVEPSLLESLRSLKLDYIDLYLIHSPMGMKRGTGEVYAKVDD
                     QVIVDVVDHMETWKAMEEIYKKGLARSIGLSNFNLLQLERVVSNCSIKPHNLQSECHL
                     YWPQNELLTFCRKHNISFTAYGPLGAPYRQKSNANDSACMPLQDPTVLSIASKLGKSP
                     AQVLLKWLLQRGIAVIPRSTKENRIRENFELSDFTLDDADMAALSNVSVRRQLFLYTW
                     ALNHPDHPNTTLVQYF"
     CDS             join(5956..6750,6903..7259)
                     /codon_start=1
                     /locus_tag="TTRE_0000339801"
                     /product="M28 family aminopeptidase"
                     /db_xref="GOA:A0A077Z3S1"
                     /db_xref="InterPro:IPR011042"
                     /db_xref="InterPro:IPR011659"
                     /db_xref="UniProtKB/TrEMBL:A0A077Z3S1"
                     /protein_id="CDW55127.1"
                     /translation="MRSVVSLLLFNFIMQSFGGAVHYEQEKNLANVTQLTFTGVNAEA
                     YFSFDGKEILFQATDRKKGTGECDQIFRLRLDDPSAVPVMVSNGKGRTTCSFFLNDNR
                     RLIYSTTFHHNEACPLHICKRKDAPKECNSLHPYLWDVFNDYDIVMDDGNGSLTFLTN
                     DSSYDAEGVVSPDGKSIVFTSSRSGDLELWLMDINGTNQRQVTNISGYDGGAFFSPDS
                     TKLVFRANHVKTAKELEEYQELLRHMAVRPSLMDIYTINVDGTDMKQITDLKYASWAP
                     YYHPDGKRIIFSSNHHHKWHPSTFNLFIVNDDGTGLEQITYDKTFDSFPMFSPDGKKL
                     IFISARNSTGQHMMNIFLADWVENGVPTARINFGLLMYIVLTTMFYPLF"
     CDS             join(9393..9668,10057..10372,10422..10916,11211..12199)
                     /codon_start=1
                     /locus_tag="TTRE_0000339901"
                     /product="hypothetical protein"
                     /db_xref="UniProtKB/TrEMBL:A0A077Z677"
                     /protein_id="CDW55128.1"
                     /translation="MDTDSNQSTIVPNGANSAGASKRTKLPTALLVARKRDAPLDERA
                     IMEYFGQNFGPVVSCHLGSRKNYKMRLQFASQASLAKAASQKIVNVGDVKIRVLHADT
                     GPAVKKHFDIRESFRFKEAKSLDEQAVVIHNENRIHSVKGHLSFCQKLETHLQKYFNV
                     TIRIKMFGSSATGFGWNSSDIDITLIRDGDAPNSGAEGRSTGPSPENGDGQSVEDNHS
                     DKEKATMLLVEQRQVGNRIKLLKMIGKFLNNFPLVQRSVVIPSKHCPILLFRNALKLQ
                     CEMSIENLYGLTKTAWLNYLSLVHGPWLPRLFSTVRYWLSFHLNATTRWRTKFNSYCL
                     LLILVTYLQTEGLIEPASEYSKDKEPVKNSTVATESGLITRLFLGFVNFLYGTSAYWE
                     HCVFRPRLGIVERNLSGFMLEHSDKFKYSWLNVEDPFEVEHNPGSTIVYTVLESLKII
                     LMNAREELQSPSSLLPLRPIHKCLPSCRRLLKETMSARRRELSIKPDQQLYNRIQRYI
                     NGLDKSTLNSEYIVCLFYECCVRCLLTLLGPVFLFEITQPQVANESMQHLMEELVVDP
                     SKAGDRFGPWPLKVTCRSTACTWQDRTNRAYKRGGSVYKQYPFPSETELSRRIAAKES
                     WHKNETEGTLQFEMEAELKNDDNIMSVSVRFHSACCSAQLNRFLHCYMILIKKYLFTC
                     FEHFLPLPE"
     CDS             join(17705..17773,17835..18002,18058..18174,18464..18553,
                     18607..18723,18793..18932,18989..19061,19124..19294)
                     /codon_start=1
                     /locus_tag="TTRE_0000340001"
                     /product="oxidoreductase"
                     /db_xref="GOA:A0A077Z5Q7"
                     /db_xref="InterPro:IPR018170"
                     /db_xref="InterPro:IPR020471"
                     /db_xref="InterPro:IPR023210"
                     /db_xref="InterPro:IPR036812"
                     /db_xref="UniProtKB/TrEMBL:A0A077Z5Q7"
                     /protein_id="CDW55129.1"
                     /translation="MSTRHVVLHNGVHMPLVGFGTWTVTDDLIRDCLPVAFEAGYRMI
                     DTAPYYRNDVAIGEVIQSWISSGKLKRSDLFVITKLQIFAHGKADVKKNLQDSLKRLQ
                     LDFVDLFLIHSPMPAKQMVGPDGTPTIFTSDKKIIPDDVDYLETWNALEDLLENGLTR
                     SIGVSNFNIQQIQRIINNCSVKPHNLQVECHPYCPQFELHDFCRQNSISFTAFGSLGS
                     PGRRFHDLAQIGANFDEEPVPLEDSVVKSIAAENGKPPASILLKWLLQRNIAVIPKST
                     NKERIRSNFQLFDFCLNDKDMKLLNEIKTRQRFFKFPW"
     CDS             join(20952..21101,21601..21657,22157..22849,23159..23479)
                     /codon_start=1
                     /locus_tag="TTRE_0000340101"
                     /product="tau tubulin kinase 1"
                     /db_xref="GOA:A0A077Z8Z5"
                     /db_xref="InterPro:IPR000719"
                     /db_xref="InterPro:IPR011009"
                     /db_xref="InterPro:IPR017441"
                     /db_xref="UniProtKB/TrEMBL:A0A077Z8Z5"
                     /protein_id="CDW55130.1"
                     /translation="MSGRYDPLDLPIGSVFQKNWTIALKLGQGGFGAVYKVQDNERQE
                     KFYALKSSSNQAEQDYLHCFPVNKKIERTNIVNSVLKMDTNVLLKVRSKKHICRFIAC
                     GRNEEINYLIMSLAGPNLEDLFEKSPSHKFSASTTLQIAIQGVEALKDVHDAGFLHRD
                     VKPANFALGRDSQARVLKLLDFGLARQILTNEGKLRPPRKALGFRGTERYASVNAHDS
                     KELGRHDDLISLFYMIMEFKNGCLPWGVNDEFDVVGDKKKTALVGRLLLLSTICPSDE
                     DYMYKTIVAAFVNSDRLDFQNKMWLMLCVLQEKGWTNIPKRLQQIYASISKWTYFKTP
                     DYKWLMNQFALVANDEGVSLDTPFDWETEQPPKDTKKDSRQVSEYPYERQYEAEKTVR
                     CKPKKESEEKDEEE"
     CDS             26014..26589
                     /codon_start=1
                     /locus_tag="TTRE_0000340201"
                     /product="DSPc domain containing protein"
                     /db_xref="GOA:A0A077Z4Y2"
                     /db_xref="InterPro:IPR000340"
                     /db_xref="InterPro:IPR000387"
                     /db_xref="InterPro:IPR016130"
                     /db_xref="InterPro:IPR029021"
                     /db_xref="UniProtKB/TrEMBL:A0A077Z4Y2"
                     /protein_id="CDW55131.1"
                     /translation="MPRTKPIPDRWADYTAFGERIPGTPFIPSKTPLSERLCSKLRST
                     ALHYTPQNLVEEIRKTGHNVKMVINLTATDRYYDPEIFSRLNVDYVKIMVPGGPVPAI
                     DFRMEFMEHVKAFKEHWNYSPDDEAAICVHCTHGVNRTGYFICKYLVNVEGWEAHEVI
                     RQFEQCRGHKFTRQYLVDDILRSDPDEMIHS"
     CDS             35641..36216
                     /codon_start=1
                     /locus_tag="TTRE_0000340301"
                     /product="DSPc domain containing protein"
                     /db_xref="GOA:A0A077Z3T8"
                     /db_xref="InterPro:IPR000340"
                     /db_xref="InterPro:IPR000387"
                     /db_xref="InterPro:IPR016130"
                     /db_xref="InterPro:IPR029021"
                     /db_xref="UniProtKB/TrEMBL:A0A077Z3T8"
                     /protein_id="CDW55132.1"
                     /translation="MPRTKPIPDRWADYTAFGERIPGTPFIPSKTPLSERLCSKLRST
                     ALHYTPQNLVEEIRKTGHNVKMVINLTATERYYDPEIFSRLNVDYVKIMVAGWRVPAI
                     DFRMEFIEHVKAFKERWNYSPDDEAAICVHCTHGVNRTGYFICKYLVNVEGWEAHEVI
                     RQFEQCRGHKFTRQYLVDDILRSDPDEVIHS"
     CDS             complement(join(49084..49182,49242..49422,52046..52138,
                     52985..53067,53126..53193,53247..53318,53614..53659))
                     /codon_start=1
                     /locus_tag="TTRE_0000340401"
                     /product="Ras protein Rab 2"
                     /db_xref="GOA:A0A077Z693"
                     /db_xref="InterPro:IPR001806"
                     /db_xref="InterPro:IPR005225"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="UniProtKB/TrEMBL:A0A077Z693"
                     /protein_id="CDW55133.1"
                     /translation="MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG
                     ARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLE
                     DARQHSNSNMVIMLIGNKSDLEARRDVKREEGEAFAREHGLIFMETSAKTAANVEEAF
                     IDTAKEIYRKIQEGVFDINNEANGIKLGPQHSPGTPNSPGSPLGRSGQSSMCC"
     CDS             complement(join(59996..60162,60229..60306,60360..60450,
                     60504..60560))
                     /codon_start=1
                     /locus_tag="TTRE_0000340501"
                     /product="hypothetical protein"
                     /db_xref="UniProtKB/TrEMBL:A0A077Z5S0"
                     /protein_id="CDW55134.1"
                     /translation="MIVSVVLASASVVGYLVARRLFVAADSGCLWGILKGGKMTQLSD
                     SSCGSTADLGCLWGILKGGKMAQLSDSSCGTTADSACLSGISKGTFHFFISIKRYHHS
                     NAQTTRNRYSVGKNEQLHMEQARRVLGV"
     CDS             complement(join(70540..70718,70766..71040,71087..71139,
                     71311..71443,71491..71498))
                     /codon_start=1
                     /locus_tag="TTRE_0000340601"
                     /product="hypothetical protein"
                     /db_xref="UniProtKB/TrEMBL:A0A077Z905"
                     /protein_id="CDW55135.1"
                     /translation="MAGENAIMLNDSSPLLYEAAASERISRFLEKIKMMPDSYQDSVQ
                     FRVDVAELAVVYEIMEKERKGKALNDEELKDYSREVLNYCCLAEEDIDSYSFISDASS
                     DMSEEKLESDEDDAISASYFAEQTFNTQASESELESLVFYTGNNASRIRRALLGVVKT
                     ESGPSIDDSFDFEQQQIEEEEELLGKFSTMLQHLRKNAVVAGEILREDTKVHFAC"
     CDS             complement(join(73124..73394,73450..73787,74197..74359,
                     74422..74644,74843..75037,75099..75269,75333..75508,
                     75551..75640,76473..76897))
                     /codon_start=1
                     /locus_tag="TTRE_0000340701"
                     /product="Activator of basal transcription 1"
                     /db_xref="GOA:A0A077Z4Z5"
                     /db_xref="InterPro:IPR000504"
                     /db_xref="InterPro:IPR009686"
                     /db_xref="InterPro:IPR012677"
                     /db_xref="InterPro:IPR034353"
                     /db_xref="InterPro:IPR035979"
                     /db_xref="InterPro:IPR036181"
                     /db_xref="InterPro:IPR039119"
                     /db_xref="UniProtKB/TrEMBL:A0A077Z4Z5"
                     /protein_id="CDW55136.1"
                     /translation="MSANAATGTPSSALSSLYHRAYACIDQAIWFDEKGEDDMAVRMY
                     EQGLAFITQAEQMSDSEKNPLVQKMLRAKEHVTTRLDFLRNKDRGNFERIPSTTALDA
                     FEPCKDAELIFQISEGVQIFQVIGNETSVPSYPTCLQIFKWAGNRETNHTFRLVSYGQ
                     HDRLERGAFLQRYAKADETPKGKTVMSTDGEAVGFIKVNTWIYPLIPDESPVMETEYG
                     AYMFPTCGQKEEGYTVGLVFSPEVSDDDKKKFESILRDMSLLRSEVTMPELTESERET
                     LSKKIADFLVNKSLLLSHGIKEYTAKTSDIVEGKLSDFSARVTPSDHPVIIDTRVQTG
                     VHFLRRGGKVAYKISGYLVEKVGEAARYLGKKLAHHATKRMKPGHLSNAVQSVAEVTT
                     GGLVGFSTVWLSLEEAAKTLGKCVANNSVKVVECKYGQSAATLADNAFYLAGYSAQTA
                     VNVHHFGVKSFATQAAKEVSRTLSEKKSVAKVPSSCADSESTKKKKKKHSEPGIVYLS
                     TIPYCLTVQRVRELFSHYGEIGRIYFQREAVRKERGSISRYVEGWIEFKDKSVAKRVA
                     LSLNNTQVGGRKRSRAYESLWNIKYLHRFKWHHLTEQLVYEKSKHKQRMRMEISQAKR
                     EAQFFTQQIEKGAAIRKLEKEILQKDGRWERYQRQLRQRKPRKTVSSGDRSELLKQVF
                     Q"
     CDS             join(79852..80083,80131..80384,80445..80683,80749..80950,
                     81011..81379,81898..82404,82476..82626,82685..82809,
                     82860..82920,82981..83195)
                     /codon_start=1
                     /locus_tag="TTRE_0000340801"
                     /product="Armadillo segment polarity protein"
                     /db_xref="GOA:A0A077Z3U2"
                     /db_xref="InterPro:IPR000225"
                     /db_xref="InterPro:IPR011989"
                     /db_xref="InterPro:IPR013284"
                     /db_xref="InterPro:IPR016024"
                     /db_xref="UniProtKB/TrEMBL:A0A077Z3U2"
                     /protein_id="CDW55137.1"
                     /translation="MTHMPQSPYVPDHVAMNLVNSKDQQTLAWAHQNYVIDSGIHSAG
                     VGTYASSAMSGVSSFIEEYGDPYTPGYTREQIDGINLDYEATRSQRIRAAIFPETIED
                     VGDIPTAQYDFGQSTNVQRLAEPSQMLKSAVVNIINYHDDAELTAKAIPELIKLLSDV
                     DQVVVQQAAMVIHHLSKRDAELIALAKSPDLVLAVINAINNNSEPELTKYAAGTLYNI
                     SRHYPGLLAIFQSGGIPALVRLLSSPIDSVVFYAITTLHNLLLHQQGSKEEVRRAGGV
                     PKMVVLLKKPIPKFLAIVTDCLQNLAYRHAETKLVILASDGPRELVRIIQSYDYEKLL
                     WTSSRLLKVLSVCPQNKPAIIQAGCMQVLGQRLVHPSQRLIRSCLDCLRNLSDEATKE
                     ENVEDLLRHLIQLLGSSDLEAVACCVDILSNLTCNNQRNKVTVCRSMGVDALIRTLQQ
                     CMNSFEIVESTLCTLRHLTCRNPDAEAAQNAPGFSYGIPLICSFVNLHAHPVVRLPVA
                     KAALGLIRNLANSAANLNTFRENGIANNVCMYFIRAFQQVQQAQRAKTEPPVIDGVSS
                     LDIVECSAATLHALSKDAVSRTIMRQMNIIPILVQLLYFEVEHIQLVAAGTLSELTND
                     SDGIILVEQCGATPRLTELLHSRNETISTYACATLHRMSGDKPAEYKKRLSVELTSAL
                     LRDDGAGNWDQEPMATDTCNVPDDFSDMVYRGSYDNAVSFDQMHVNSPATVPSGWDGM
                     DSSAPPPGSAGQQYGNVPASLPAQAAASRYPPQQPVNSWYDTDL"
     CDS             join(84347..84479,84696..84980,85086..85317,85376..85533,
                     86204..86410,86463..86566,87043..87333,87384..87646,
                     87694..87901,88950..89314,89369..89498)
                     /codon_start=1
                     /locus_tag="TTRE_0000340901"
                     /product="6 phosphofructokinase"
                     /db_xref="GOA:A0A077Z697"
                     /db_xref="InterPro:IPR000023"
                     /db_xref="InterPro:IPR009161"
                     /db_xref="InterPro:IPR015912"
                     /db_xref="InterPro:IPR022953"
                     /db_xref="InterPro:IPR035966"
                     /db_xref="UniProtKB/TrEMBL:A0A077Z697"
                     /protein_id="CDW55138.1"
                     /translation="MAAEKRERRTTSGGSLLGREGEHVRPLTNTGDVIGVFTSGGDSQ
                     GMNAALRAVCRMGLYMGCKVYFIHEGYQGMVEGGHNITLANWDTVSDVIQRSGTIIGS
                     ARSKDFYTPEGRLKAAYNLLCCGINNLVCIGGDGSLTGANLFRQEWPSMLKELLHRGS
                     ITAEKVAKHPNIKIVGLVGSIDNDFCGTDMTIGTDTALHRIIEAIDAVQSTAQSHQRS
                     FVVEVMGRHCGYLALVAGLASEADFTFIPEWPPPAEWRDILCQKLHETRLHGQRVNII
                     ICAEGAVDCNGSPITAEMVRNIIIERLNYDTRITVLGHVQRGGNPSAFDRLLGSRMGA
                     EAVTALMDTPPNAEPCVIAIHGGTVVRVPLAKCVERTNQVKKAMAEKDWETAVRLRGK
                     TFIRNLETYKLLTKIRPPMDKNILSGGHKFTFAVMNVGAPACGMNAAVRSFVRNALSH
                     GCRVYAIKDSFDGLIKGCFKDMDWHDVTNWSMFGGSFLGTQKSLPTKNMEQVVAQLRH
                     FKIDGLFLIGGFEAFHSCLIMTELRQKFREFCIPMVTLPCTISNNIPGTSISIGSDSA
                     LNEICRLIDKIKQSAIGTKRRVFIVETMGGYCGYLATLSALASGADNAYIFEEPFTVD
                     DMKRDVQVIARKMKSGVQRYIIMRCERANENYTTQFIMQLFSEEGKGNFSTRINILGH
                     SQQGGCPTPFDRNLATRMAAQAAETLVSKARESVQPDGSVYTTAVDSAVLLGIRERHS
                     ECVSVMELKEQADFERRLSTDRWWLKLRPLMRILAGHHSFYDMTASNADVK"
CONTIG      join(CBXK010000147.1:1..122544)
//