LOCUS       HF952157                2758 bp    DNA     circular VRL 02-APR-2015
DEFINITION  Cotton leaf curl Burewala virus complete genome, clone RCm2V.
ACCESSION   HF952157
VERSION     HF952157.1
KEYWORDS    complete genome.
SOURCE      Cotton leaf curl Burewala virus
  ORGANISM  Cotton leaf curl Burewala virus
            Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ullah R.
  JOURNAL   Submitted (02-APR-2013) to the INSDC. Ullah R., NIBGE, Agricultural
            Biotechnology Division, NIBGE, Faisalabad, 38000, PAKISTAN.
REFERENCE   2
  AUTHORS   Ullah R., Akhter K.P., Mansoor S., Saeed M.
  TITLE     Wild genotypes of G. hirsutum as a good source of resistance
  JOURNAL   Unpublished.
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Cotton leaf curl Burewala virus"
                     /host="Gossypium hirsutum cv. CIM 496"
                     /mol_type="genomic DNA"
                     /geo_loc_name="Pakistan:Faisalabad"
                     /isolation_source="host leaf"
                     /clone="RCm2V"
                     /db_xref="taxon:620894"
     CDS             186..488
                     /gene="AV2"
                     /product="Pre-coat protein"
                     /db_xref="GOA:A0A0A8KCI1"
                     /db_xref="InterPro:IPR002511"
                     /db_xref="InterPro:IPR005159"
                     /db_xref="UniProtKB/TrEMBL:A0A0A8KCI1"
                     /protein_id="CCW43194.1"
                     /translation="MLAVKYLQLVEKTYSPDTLGYDLIRDLILVIRARNYVEATSRYN
                     HFHARFEGTPPSELRQPIRVPCCCPHCPRHQSKSMGEQAHEQKAQDVQDVQKSRCS"
     CDS             292..1062
                     /gene="AV1"
                     /product="coat protein"
                     /db_xref="GOA:A0A0A8KAA1"
                     /db_xref="InterPro:IPR000263"
                     /db_xref="InterPro:IPR000650"
                     /db_xref="UniProtKB/TrEMBL:A0A0A8KAA1"
                     /protein_id="CCW43195.1"
                     /translation="MSKRPADIIISTPASKVRRRLNFGSPYACRAAAPIVRVTKAKAW
                     ANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLT
                     HRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFD
                     NEPSTATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGK
                     YENHSENALMLYMACTHASNPVYATLKIRIYFHDSVTN"
     CDS             complement(1059..1463)
                     /gene="AC3"
                     /product="REn protein"
                     /function="replication enhancement"
                     /db_xref="GOA:D3HIR1"
                     /db_xref="InterPro:IPR000657"
                     /db_xref="UniProtKB/TrEMBL:D3HIR1"
                     /protein_id="CCW43196.1"
                     /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMD
                     ILTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSI
                     NNVVRAVDHVLWNVLQHVVFVDQSSSIKFNIY"
     CDS             complement(1534..2595)
                     /gene="AC1"
                     /product="rep protein"
                     /function="associated with replication"
                     /db_xref="GOA:A0A0A8KAA4"
                     /db_xref="InterPro:IPR001191"
                     /db_xref="InterPro:IPR001301"
                     /db_xref="InterPro:IPR022690"
                     /db_xref="InterPro:IPR022692"
                     /db_xref="UniProtKB/TrEMBL:A0A0A8KAA4"
                     /protein_id="CCW43197.1"
                     /translation="MAAPKRFKVQAKNYFITYPQCSLTKEEALSQIQAINTPSNKKYI
                     KLCRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTGSAHFHPNIQGAKSSSDVKA
                     YIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVL
                     QFHNLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPLRPRSIV
                     IEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMG
                     AQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYTEFLNEEKNTALKNWALKNAIFI
                     TLEGPLYSASNQSTAQGSE"
     CDS             complement(2241..2681)
                     /gene="AC4"
                     /product="AC4 protein"
                     /db_xref="InterPro:IPR002488"
                     /db_xref="UniProtKB/TrEMBL:A0A075X2L6"
                     /protein_id="CCW43198.1"
                     /translation="MPFGDTINCIQSPIPRVKAHQLSLIDQSQWLPPNVLKYKPKIIS
                     SLIHSAHSLKRKHFPKFKPSTHPRIKNTSNSAESYTKMGALISMCSSSSRANSSAQIT
                     DSSTWYPQPGQHISIRTFRELNQAQMSRPTSTRTGTLSSGESFR"
BASE COUNT          716 a          550 c          651 g          841 t
ORIGIN      
        1 accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata
       61 tgacgcgctc aaagcttaaa taattctccc gcctattata agtacttcgt tgctaagtat
      121 gcgtttgaaa aatgtgagat ccactgttaa atgggttccc cgacaccgtt cacggtctta
      181 ggtgtatgtt agcagttaaa tatttgcagt tagtagagaa aacttactct cctgatacat
      241 tgggttacga tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag
      301 cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgccg tctgaacttc
      361 ggcagcccat acgcgtgccg tgctgctgcc cccattgtcc gcgtcaccaa agcaaaagca
      421 tgggcgaaca ggcccatgaa cagaaagccc aggatgtaca ggatgtacag aagtccagat
      481 gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt
      541 cagcatatag gtaaagtaat gtgtattagt gatgttactc gtggtactgg gctgacccat
      601 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat ctggatggat
      661 gagaacatta agacgaagaa tcacacgaat agtgtgatgt ttttcttggt tagagatcgt
      721 agacctgttg ataaacctca agattttgga gaggtattta atatgtttga taatgagccc
      781 agtacggcga ctgtgaagaa tgttcatcgt gataggtatc aagttctgcg caaatggtat
      841 gcaactgtca ccggtggaca atacgcttca aaggaacaag ctctcgtgaa gaaatttatt
      901 agagttaata attatgttgt gtataaccag caggaagctg gcaagtatga gaatcattct
      961 gagaatgctt taatgttgta tatggcgtgt actcacgcct ctaacccagt gtatgctacc
     1021 ttgaagatac ggatctactt ccatgattcc gtgacaaatt aataaatatt gaattttatt
     1081 gaagatgatt ggtctacaaa tacaacatgt tgtaatacat tccataatac atgatcaact
     1141 gctctaacta cattattaat actgacaatt cctaagttat ttaaatattt tagcacttga
     1201 gtcctaaaaa cccttaagaa acgaccagtc ggaggctgtg aggtcatcca gattcggaaa
     1261 gctatgaaac atttgtgtat ccccaacgct ttcctcaggt tgtgattgaa ctggatcctg
     1321 atcgtgagta tatccatatt cgtcgtgaat ggacggttga cgtggctgat gatcttgaaa
     1381 tagaggggat ttggaacttc ccagatatat gcgccattcc ctgcttgagc tgcagtgatg
     1441 ggttcccctg tgcgtgaatc catggttgtg gcagttgatt gacagataat aagaacaccc
     1501 gcattcaaga tctactctcc tcctcctgtt gcgttattcg cttccctgtg ctgtactttg
     1561 attggaagct gagtacagtg gtccttcgag agtgatgaag attgcatttt ttaaggccca
     1621 attctttaac gctgtgtttt tttcctcgtt gaggaattcc gtataactgc tgttcggacc
     1681 aggattgcac aggaagattg tcggtatccc gcctttaatt tgaactggct ttccgtattt
     1741 tgtgttggac tgccagtctc tttgggcccc catgaactct ttaaagtgtt tgaggaaatg
     1801 cgggtcgacg tcatcaatga cgttgtacca ggcgtcgtta ctgtatactt tgggactcag
     1861 gtctagatgt ccgcacaagt agttatgtgg tcccaatgat ctagcccaca tcgtcttccc
     1921 cgttcgacta tctccctcaa ttactatact ccgaggtcta aggggccgcg cagcggcatc
     1981 gacaacgtta tcgatggccc aaacttcaag ttcttctgga acttgatcga aagaagaagg
     2041 agaaaaagga gaaatatagg gagccggtgg ctcctgaaag attctgtcta gatttgcatt
     2101 taaattatga aattgtagta caaaatcttt aggagctagt tccttaatga ctctaagagc
     2161 ctctgactta ctgcctgcgt taagtgctgc ggcgtaagcg tcgttggctg tctgctgtcc
     2221 tcctcttgct gatcttccat ctatctgaaa ctctccccac tcgagagtgt ccccgtcctt
     2281 gtcgatgtag gccttgacat ctgagcttga tttagctccc tgaatgttcg gatggaaatg
     2341 tgctgacccg gttggggata ccaggtcgaa gaatctgtta tttgtgcaga cgaatttgcc
     2401 ctcgaactgg atgagcacat ggagatgagg gctcccatct tcgtgtaact ctctgcagag
     2461 tttgatgtat tttttattcg agggtgtgtt gatggcttga atttgggaaa gtgcttcctc
     2521 tttagtgagt gagcactgtg gataagtgat gaaataattt ttggcttgta ctttaaaacg
     2581 tttgggggca gccattgact ttggtcaatt agagacaact gatgggcttt tactctggga
     2641 attggagact ggatacaatt tatagtgtct ccaaatggca tattctgtaa ataactagaa
     2701 gttcgtttga aattcaaatt cccctttggg ctccaaaagc ggccatccgt ataatatt
//