LOCUS HE601475 145932 bp DNA linear CON 17-SEP-2015 DEFINITION Caenorhabditis briggsae AF16 supercontig from assembly CB4, cb25.fpc4071. ACCESSION HE601475 CAAC03000000 CAAC02000545 VERSION HE601475.1 DBLINK BioProject:PRJNA10731 BioSample:SAMEA3138181 KEYWORDS . SOURCE Caenorhabditis briggsae ORGANISM Caenorhabditis briggsae Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 145932) AUTHORS Howe K.L. CONSRTM WormBase Consortium JOURNAL Submitted (03-OCT-2011) to the INSDC. WormBase group, European Bioinformatics Institute, Cambridge, CB10 1SA, UNITED KINGDOM. REFERENCE 2 (bases 1 to 145932) AUTHORS Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K., Durbin R., Waterston R.H. TITLE The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics JOURNAL PLoS Biol. 1(2), E45-E45(2003). PUBMED 14624247 REFERENCE 3 (bases 1 to 145932) AUTHORS Ross J.A., Koboldt D.C., Staisch J.E., Chamberlin H.M., Gupta B.P., Miller R.D., Baird S.E., Haag E.S. TITLE Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination JOURNAL PloS Genet. 7(7), E1002174-E1002174(2011). COMMENT Details of C.briggsae assembly version CB4: To improve upon the C. briggsae nuclear genome assembly CB3, 167 AF16/HK104 advanced-intercross recombinant inbred lines were successfully genotyped at 1,032 single nucleotide polymorphism (SNP) markers. The resulting data were used to estimate high-density genetic maps. Sequences were assembled by combining the physical and genetic positions of the SNPs to inform the process of ordering and orienting the cb25 supercontigs into chromosome assemblies. 37 of the cb25 fingerprint contigs were split into 100 supercontigs to resolve discrepancies between the physical and genetic orders of SNPs. 638 sequence supercontigs comprise the CB4 assembly. The total nuclear genome content decreased from cb25 to cb4 because of the removal of three supercontigs containing mitochondrial genome sequence (totaling 20.1 kbp). Assembly_name: CB4 Assembly_program: Phusion Seq_technoloy: capillary (whole-genome-shotgun) Seq_coverage: 10x Annotation details: Coding seqences below are the result of integration and manual review of the following data : computer analysis using the programs Genefinder (version 980506; P. Green, unpublished data), FGENESH (Salamov and Solovyev 2000), TWINSCAN (Korf et al. 2001), and the Ensembl annotation pipeline (Clamp et al. 2003); similarity to other proteins from BlastX analyses (http://blast.wustl.edu); sequence conservation with C. elegans using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000); individual C. briggsae GenBank submissions; and personal communications with C. briggsae researchers. tRNAs are predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964). FEATURES Location/Qualifiers source 1..145932 /organism="Caenorhabditis briggsae" /strain="AF16" /mol_type="genomic DNA" /note="supercontig cb25.fpc4071" /db_xref="taxon:6238" tRNA complement(168..236) /gene="CBG28449" /locus_tag="CBG_28449" /standard_name="CBG28449" /product="RNA transcript CBG28449" /note="C. briggsae predicted tRNA" tRNA complement(255..326) /gene="CBG29009" /locus_tag="CBG_29009" /standard_name="CBG29009" /product="RNA transcript CBG29009" /note="C. briggsae predicted tRNA" tRNA complement(1434..1506) /gene="CBG28462" /locus_tag="CBG_28462" /standard_name="CBG28462" /product="RNA transcript CBG28462" /note="C. briggsae predicted tRNA" CDS join(1882..2026,2814..3000,3049..3226) /gene="Cbr-clec-130" /locus_tag="CBG_17751" /standard_name="CBG17751" /product="Protein CBR-CLEC-130" /note="C. briggsae CBR-CLEC-130 protein ;" /note="Predicted" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="UniProtKB/TrEMBL:A8XRQ3" /protein_id="CAP35327.1" /translation="MQILLLALCISSTLADCPAAWKTFLNSEMEENTANGCEADWKFV NRPSTSILAQVPESSGSLWTGLRRTKKCIGQKITATCTNLTSFEWTDGSSTGTDGFVF QAGQPDNKNLDQNCALFLASKTPTVVANKGTYYAASYEDTGCEVGEFSEAHLPRKILG HVCGKKASK" CDS join(<4260..4376,4423..4528,6276..6462,6509..6562, 6612..>6660) /codon_start=1 /gene="Cbr-clec-133" /locus_tag="CBG_17752" /standard_name="CBG17752" /product="Protein CBR-CLEC-133" /note="C. briggsae CBR-CLEC-133 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domain IPR001304 (C-type lectin)" /note="Predicted" /db_xref="InterPro:IPR001304" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="UniProtKB/TrEMBL:A8XRQ4" /protein_id="CAP35328.1" /translation="SLLVLLFCFSATFAAVPVAMKCPDGWKWFIRSRGGWCMKVFVET LVQEKAEEKCVAQGATIAGVQNANESAWMRSELESQTKTSGYMWVGGKRVNPCLSSAL TTACSRVTSFYWTDKSTVGVQGFTWLAGEPNNAFGSQWCLQLMSNTGLMDDVSCAATT LGYVCGKVASF" CDS complement(join(7430..7484,7630..7813,7915..7967, 8956..9009,9054..9243,9291..9396,9443..9571)) /gene="CBG17754" /locus_tag="CBG_17754" /standard_name="CBG17754" /product="Protein CBG17754" /note="contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domain IPR001304 (C-type lectin)" /note="Predicted" /db_xref="InterPro:IPR001304" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="UniProtKB/TrEMBL:A8XRQ5" /protein_id="CAP35329.2" /translation="MNKSSLLVLLFCFSATFAAVPVAMNCPDGWKWFIRSRGGWCMKV FVETLVQEKAEEKCVAQGATIAGVQNANESAWMRSEFESQYKTPAYMWVGGKRIKPCL NSGLTAACSRVTSFYWTDKSTVGVQGFTWKEGEPNNHGGGGQWCLQLMSNTGLMDDVN LEIQAEAKCEEHGAFIAADLESFLKAPGYFWIGAKRITPCRYVGITNRCSQITWFYWI DESTVGVQGFRWLLSEPNNVKWSDKSSGYVCGKVASFD" tRNA 8472..8544 /gene="CBG28969" /locus_tag="CBG_28969" /standard_name="CBG28969" /product="RNA transcript CBG28969" /note="C. briggsae predicted tRNA" tRNA 9908..9980 /gene="CBG28907" /locus_tag="CBG_28907" /standard_name="CBG28907" /product="RNA transcript CBG28907" /note="C. briggsae predicted tRNA" tRNA 10054..10125 /gene="CBG28799" /locus_tag="CBG_28799" /standard_name="CBG28799" /product="RNA transcript CBG28799" /note="C. briggsae predicted tRNA" CDS complement(join(10478..10568,10610..10693,10744..10933, 11042..11150,11214..11302,11346..11451)) /gene="CBG17755" /locus_tag="CBG_17755" /standard_name="CBG17755" /product="Protein CBG17755" /note="contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domain IPR001304 (C-type lectin)" /note="Predicted" /db_xref="InterPro:IPR001304" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="UniProtKB/TrEMBL:A8XRQ6" /protein_id="CAP35330.2" /translation="MFKSLIFSVFLAVLVFARFDSDEEPCKEEDVSTEPTTVSTDAPA NLTCESGWKSFQRPSGEWCMKIVYENSVTQPVAEQRCQAQGATLTGLQNQLEMLYVTY TVTNDIFPESGSVWIGMKRTEACANSTITGECKWDNSFVWTDKSATGIDGVNWAYNQP DNARELSQHCVILNIGPSGYWLYSQIGLMDDMGCTFDFVAEDRKALDVKAFVCGKKPS AKIN" CDS join(11782..12072,12886..12994,13575..13764,13820..13903, 13956..14037) /gene="CBG17757" /locus_tag="CBG_17757" /standard_name="CBG17757" /product="Protein CBG17757" /note="contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domain IPR001304 (C-type lectin)" /note="Predicted" /db_xref="InterPro:IPR001304" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="UniProtKB/TrEMBL:A8XRQ7" /protein_id="CAP35331.2" /translation="MLRHLPILLILVTPGYCMFRPQSPKQQCVDPKAYFSVDENQSRQ SYNEENDEFFHVEENLEVSQNQLIQRDMVQESNGNCEEGWKNFKRPSGKWCMKIFYED SITQSTAEQRCQAQGATLSGLQNQLESLYVTYTVSTHIYPSTGSIWVGLKRQTSCEKV GLTRNCTWATSFLWTDNSATGTHGLGWACNQPDNARNRSQNCATLTASYTGSVLGSQT ALLDDVSCDFDYVKMDRKDRDIKAYICGKKPKA" assembly_gap 12532..12541 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(14582..14678,14723..14815,14875..15069, 15668..15942)) /gene="CBG17758" /locus_tag="CBG_17758" /standard_name="CBG17758" /product="Protein CBG17758" /note="Predicted" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="UniProtKB/TrEMBL:A8XRQ8" /protein_id="CAP35332.2" /translation="MKLSIFIFLCFSILSSAIYFSGGSQNRYPSESHDGYDDYYAPQR PPSYDNYGPPHRPPHRPPPRPYPPPRPHPPPTARPPPCPKGWYWTQRDFLGDGMSVIL PQPSGGVWVGVKRVPRCIGQHLTPACKKTHSFYWTDGSANGYEAMKFQPNEPDNNGGK NCALLMISYGPKVPAEHPLNIGQMIDVPCSQNANSYWPPGSKPRQNRAYVCGRRTPGY G" CDS join(18510..18526,18574..18856,18906..19348,19398..20049, 20740..20937) /gene="Cbr-smu-2" /locus_tag="CBG_17759" /standard_name="CBG17759" /product="Protein CBR-SMU-2" /note="C. briggsae CBR-SMU-2 protein; contains similarity to Pfam domain PF07808 RED-like protein N-terminal region contains similarity to Interpro domains IPR012916 (RED-like, N-terminal), IPR012492 (RED-like, C-terminal)" /note="Predicted" /db_xref="GOA:A8XRQ9" /db_xref="InterPro:IPR012492" /db_xref="InterPro:IPR012916" /db_xref="InterPro:IPR039896" /db_xref="UniProtKB/TrEMBL:A8XRQ9" /protein_id="CAP35333.1" /translation="MSDNPTNLRNEDFRKLLTSTRSDRPASSAFAKPEAKSSNDEKPA SFKHKHLKPAKFKKHQAPSHGKTKKEKTEADEDEAHLKSILKNYRDRAAERRKQGDEK EDTTKLTAAYRAVPGDARTAQDQADLRKQAILESKYLGGDLEHTHLVKGLDYSLLNKV RSEMNEDDEEDNDNDVEALEMKKKPEGASSLTQELAQSHSENRMVRSLHRVLFKNEVP LRNDLFAKGKMAYVVELEDEETDIPTTLLRSLHDLPRAESAQSIQANSLIISKLAHVL SHLRAEPKKKKKDEFRAPTSSGTVSSAPKGDSIYDDLDEYVPSRKARDSRDSRDHRDN RDRRDDRDRRRERSRSRDRDRYFEKTANSRREEEQKRREQQRERERAEKERQKERERE REAEKAKERERKRKEMEASSGYDECYPGGLVEMGGAWDSDEEADYSKMDSGAKKNQAV NRWDFDTEEEYATYMEGREALPKAAYQYGVKNGEGGRKNKKQTAVSEAKKLDRELNEI NKIMDKRKAGEGGGGEYKKPKY" CDS complement(join(21155..21471,21616..22035,22113..22249, 22553..22663,23825..23907,24068..24181,24655..24711, 24762..24848)) /gene="CBG17760" /locus_tag="CBG_17760" /standard_name="CBG17760" /product="Protein CBG17760" /note="contains similarity to Pfam domain PF01485 IBR domain contains similarity to Interpro domains IPR017907 (Zinc finger, RING-type, conserved site), IPR002867 (Zinc finger, C6HC-type)" /note="Predicted" /db_xref="GOA:A8XRR0" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR002867" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR017907" /db_xref="InterPro:IPR031127" /db_xref="UniProtKB/TrEMBL:A8XRR0" /protein_id="CAP35334.2" /translation="MQQPVTRKEWLAKRNQPDLRVVRRNSRGYREPHRKSSIELGQDA LAIQRQINMIECELCCESYRHPHDFLTLYNCRHQYCKRCVLRHTTICITEGRIEVPCP GCSEDIHPSDIKIITDDDRILYEKYEMFSVRRVLMTMDDMRFCPAPDCGFAVIVPNGS RCPRISCYNPRCQEEFCFDCKQFWHQGKACVEFSPNDPTSCRPCPRCQTLIMKANDGS CNHMTCTMCRAEFCWLCLKEITDFHYMSPTGCTFWGKKPWSAKRKLMWQIGTLIGTPA VVVATAVVSVPLIMGLVPYSIGKKVYRKMKSESKAKRAISTAAAVTGSAIVSPVVAGV AVVLGVPLAIGYTYIMVPKALIHDVTDMMNKKKQPEIMEITAGELLKLSMDESEELCK KPSTIVTSSETSEYRNADGSAPGPSSVTSSDYSEDFDSTDFVELTTDSD" CDS complement(join(25843..26850,26901..26945)) /gene="Cbr-col-71" /locus_tag="CBG_17762" /standard_name="CBG17762" /product="Protein CBR-COL-71" /note="C. briggsae CBR-COL-71 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)" /note="Predicted" /db_xref="GOA:A8XRR1" /db_xref="InterPro:IPR002486" /db_xref="InterPro:IPR008160" /db_xref="UniProtKB/TrEMBL:A8XRR1" /protein_id="CAP35335.2" /translation="MGLKTRHEDDDPKTKAYRLIGYAAVTFSAVSVLCFCVTMPVVFT YVQSVKRQMSHEMATCNVNARQIFDDVAALKAGFPFAPAGNRTARQAGYDGHPSKPAG SYGGDSEVKGNSPGAQYGDDKPFVAVGVEDGPHTATVTADHEGACNSCCLPGPPGPPG PPGRPGPNGKAGANGLNGNPGRPPEAPCEPVTPPPCKPCPAGPKGPPGPAGYPGADGQ PGVQGENGEKGPDGGPGDKGRCGSPGKVGEQGATGEKGENAENNEPVPGPKGPPGQPG PQGPRGTPGHPGEDGEPGAGGPPGENGTDGENGEDGVPGVPGHDGKPGRAGERGICPK YCAKDGGIFFEDGTRR" CDS join(27815..27928,27972..28229,28277..28441,28488..28733) /gene="CBG17763" /locus_tag="CBG_17763" /standard_name="CBG17763" /product="Protein CBG17763" /note="contains similarity to Pfam domain PF08698 Fcf2 pre-rRNA processing contains similarity to Interpro domain IPR014810 (Fcf2 pre-rRNA processing)" /note="Predicted" /db_xref="InterPro:IPR014810" /db_xref="InterPro:IPR039883" /db_xref="UniProtKB/TrEMBL:A8XRR2" /protein_id="CAP35336.2" /translation="MSALYFKKLRQQQNPDAVSSSDDSDSDEEIPKKNKQQKEPQPQE EDFADANDIFVVDRAGGDDSAKEGNFLSVDLLGTSYLEPYEMDKDLKELLEKAVVGPK FEDNHQPQTRLLGRNALARYKKAEREKTKGSDWFNLPATELTEEHKRDLEYLQMRSTL DPLAHYKRNDRAVLPKYFQVGRVVDAPEDFYSSRMLKKERKKTMVDEILHNEESLSKA KKKFAEIRAKEQTKRRGAFQRFGGARKSHKHQREAKMKNKRK" CDS join(28894..29084,29319..29403,29741..29823,30013..30292, 30344..30459,30592..30664,31237..31371) /gene="Cbr-cyh-1" /locus_tag="CBG_17764" /standard_name="CBG17764" /product="Protein CBR-CYH-1" /note="C. briggsae CBR-CYH-1 protein; contains similarity to Interpro domains IPR015429 (Cyclin C/H/T/L), IPR023598 (Cyclin C/H)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XRR3" /db_xref="InterPro:IPR013763" /db_xref="InterPro:IPR031658" /db_xref="InterPro:IPR036915" /db_xref="UniProtKB/TrEMBL:A8XRR3" /protein_id="CAP35337.2" /translation="MYSTSTQKREWTYTPEKLAAVRLETNIKFREKYESVITPEELEL FVTPEEELRMQRSIEDAALKFADKFRPHIWPSVKWTALAFFKRAFLVWMVMMGCFYLA MKIDEFYITIDDFVKNMNVGDPRQNAERILKLEPELMKVLNYNLTVHCPYRPFEGHLM DMKTRMLLLNFDLESIRRDSMRFFQNALQTDVLLVYPPSQIALAAINFGCMLKSDEIL REFLRKMIGIEEDSWSARDVRPEDLEKLEKTVTRVNHIMREVEKQFVAVTEQERENHK SRLSQIQNLLPILNERRKEAWRAGGCIGQEPGLVTEAPVDSDDE" assembly_gap 30711..31019 /estimated_length=309 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(32235..32303,32356..32583,32650..32736)) /gene="CBG17765" /locus_tag="CBG_17765" /standard_name="CBG17765" /product="Protein CBG17765" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XRR4" /protein_id="CAP35338.1" /translation="MVHVATILTILCFSLATFSDASIATARLRTGQSFLIREAENANA LAHTIASGPQKMEFTGRNRGKRVDQNGQIVNSENFRLFQNGSVLIKHASPSDAGTYQK DPNPMIRIGDMGYAPPILIIQMHDF" CDS complement(join(33308..33442,33495..33634,33680..33998, 35344..35702,35751..36236,36286..36715,37079..37208, 37260..38170,38356..38837,39114..39183)) /gene="CBG17766" /locus_tag="CBG_17766" /standard_name="CBG17766" /product="Protein CBG17766" /note="contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF12796 (Ankyrin repeats (3 copies)) , PF00023 (Ankyrin repeat) , PF00533 (BRCA1 C Terminus (BRCT) domain) contains similarity to Interpro domains IPR002110 (Ankyrin repeat), IPR020683 (Ankyrin repeat-containing domain), IPR003125 (Domain of unknown function WSN), IPR001357 (BRCT)" /note="Predicted" /db_xref="GOA:A8XRR5" /db_xref="InterPro:IPR001357" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR003125" /db_xref="InterPro:IPR020683" /db_xref="InterPro:IPR036420" /db_xref="InterPro:IPR036770" /db_xref="UniProtKB/TrEMBL:A8XRR5" /protein_id="CAP35339.1" /translation="MYTSFFITSLLLLAPVVWTAAKQDKSDLELITEDFQILARITNA AFLQAALVRKDVKARDVIDEFLKISPLDFDHITAIDVQAAVESITKTYRNAQQFAKLE ESDKYQLDDVASNFDSKLEEWDDEEWNPIMKISLESLFDESERIFMEFQMICSKSSSS IHSLRSYMDMRSNNKPADDLAVERKIWTNSSDIWGKESFPKSNKSIGQQMSELIQFHK LHSDSLDSPPNSLTIGFLQPDDTQKVQDDLKSTWFEKHFVRTANVEMLSKALKPFLEI SKTIKPLADKWFPIYRLDDQTSENHKEVAEFLREVDDYVFNRKTYDRQIGLMVGALSK CFKQPVDEFNTTLALYEEQTKSRKVALKGLIKLDDTVDKFIETNFINVTSPSESDAVK CFKILGHLLPDNITNENSLPIIEEMRKNYTRCVTRQGYSMTDLIKSFGVVHEDMDYYL ELSMNVSNSDGNKAQTTPVPLEDVIKQSNVVSSLECLRNEEFKTANLEKLRPIAKLLA TMSSPPNATFVKAIESYLESIAQVKSALAKVEKTIREVDYRPKRAVASDETDLVLALN ISRLENENMGTCVKALSNLVEVRARRNQLLSVGRLDGDARDLMSKEGGLEDFMDSTDD LSRLLKQSDDLDSKAKTLREKSLEEMSAVFQAMTHMRGILGDRDKLWKLSKSDSANDP KFDGAKKKWKVLTAINLNFQSYKAKVANGELVVSTLKNHFDHIFGHSKSGDHKTVIVE KHNNWILIIGISFGIFFLSAAAVLGIYGFTEKGKKHYKKIWFYYFAKPEEFEARWRFS MFMDMENGKHALLDAVRETNHTNMLNALKRGVYVNAYNKFGNTALHLTARGGHWKMVE LLIKYGADRSLLNYKNLTAEQCIPVPNERTAGGKEVDNTVSLEDKTEAYKKTLAVFEK YKNKKFRKAVPDVFPFTSFHIYFDENTEEALVHRFSERFGSITSHDDISIGITHYVVK TDENGIFEATGLKQLELIFNGIILVQDKWMTACLEDETQIEHDTKYLVQKFKYKGVIY DTVNQWSTAMAKSEMPFLCGAKVALLVKEMDDILTFSSLIDNNGGTMLHEFPLSENYN EDSHPYLHSNLGPLFLIHDGTPGVSDYKSNKMYTLFTKEEFYAFMLKREVSRDTRINP PDVVKQT" CDS join(40442..40607,40756..41018) /gene="CBG17767" /locus_tag="CBG_17767" /standard_name="CBG17767" /product="Protein CBG17767" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XRR6" /protein_id="CAP35340.2" /translation="MKLFSLFILVSTIVACSAQSDQDAIQQCHNFFKGFMRAIEDGDL FKLLAHFSPQSGETNLDAEALLRDLKDTRISFRSAKFVGSNIEVSVIFRQPRSEKAFR SADFVLEKNADISAWTIKSMSDLKGGAPGAKGMLPPLVMG" CDS complement(join(42166..42223,42270..42428,42677..42794, 49717..49853,49912..50376,52690..52783,52897..52990, 53035..53149,53738..53960,54017..54236,54299..54632, 55359..55491,56499..56556)) /gene="CBG17768" /locus_tag="CBG_17768" /standard_name="CBG17768" /product="Protein CBG17768" /note="contains similarity to Pfam domains PF01549 (ShK domain-like) (2), PF03098 (Animal haem peroxidase) contains similarity to Interpro domains IPR019791 (Haem peroxidase, animal, subgroup), IPR002007 (Haem peroxidase, animal), IPR003582 (Metridin-like ShK toxin)" /note="Predicted" /db_xref="GOA:A8XRR7" /db_xref="InterPro:IPR003582" /db_xref="InterPro:IPR010255" /db_xref="InterPro:IPR019791" /db_xref="InterPro:IPR037120" /db_xref="UniProtKB/TrEMBL:A8XRR7" /protein_id="CAP35341.2" /translation="MKKPSHILLLCLLAFSTFHVTHAEEENELDASGEGPPGTSGDSA PGAVGPATEETKTEDDANVDKSCKDRHDLCKFWSSIGECNTNKNWMEDHCPVSCDVCN GVTTCIDRHRLCGFWATIRECETNAVWMLSNCPKACKACKGRSVTLGGTGPGGTFKED DCTFITTNEDTSIRKTLSIRDVRDSNANFNCAPTQETPNCNRNLCYHLRYRSFDGTCN NLERPMIGSAFTALMRLKKPLYDNGLNAPTSSFLRSRPSARDASRLLLSSSTQIQHHS NALLMQWGQFIAHDLAKTTMLNNQECAACTSNKGRCTSVFLSRSDPTFGRFMCLPVAR STPVCGTGVTNFREQFNENTAFIDGSMIYGSSDRDQFLFRQGAFLKTKLINNRVFPPV DKNNNVVAGDDRANIFVGLASLHVLYLRQHNRIAATLQRVNPHWDQERVFHESRKIVG AMIQRITFTEYLPKVLGVAFEERIGAYPGYDPNTDPSVANEFTSCAFRFGHGMIQEFY PFLNEKFQHIGGIPFNDGMFKSTHILNNGIDPLIRGLMTLPAKMPQRLTPAVTERIFG NSDLGSINIQRGRDHGVPPYTVWRKFCGLPEVKDFEGLKAVISNQIVIDNLKVVYKHV DAIDMYVGSLLEDPVRDALVGPTLACIIGEQFKRTRNGDRLWYENSKVFSGEQLTQIK KITMSRVLCDAGEHFPMVPRRAFSVFKPTASNLVKCEEIPDLDYNAWKEELTV" assembly_gap 43828..49255 /estimated_length=5428 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 50929..51262 /estimated_length=334 /gap_type="within scaffold" /linkage_evidence="unspecified" tRNA complement(60124..60195) /gene="CBG28941" /locus_tag="CBG_28941" /standard_name="CBG28941" /product="RNA transcript CBG28941" /note="C. briggsae predicted tRNA" tRNA complement(60273..60345) /gene="CBG28258" /locus_tag="CBG_28258" /standard_name="CBG28258" /product="RNA transcript CBG28258" /note="C. briggsae predicted tRNA" CDS complement(join(62531..62814,62856..63039,63084..63280, 64832..65000)) /gene="CBG17769" /locus_tag="CBG_17769" /standard_name="CBG17769" /product="Protein CBG17769" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XRR8" /protein_id="CAP35342.2" /translation="MKIPFFFLFIGIGAYTGPLPPSEALSQAFFDGFMEAVNENNQTA IKNRFAPSFLNDGVTKKIYENIVEDLSNYTYSIEHAFYDIFEQPRKNTWILNTTVHFR GPAPTYHRKNYQFAIENQNNNPQLYPDAWQIKAVVPIVYHRKHFVQNQVTPEMILGNM LSEFLNCVNTGDINRLQGMIEMHEVVSPTGMQQLRDIVGGNRFEVRSYRIVKSGEISS TVIFTNPSTQLANLFWFVFKSQDEQNLYFWKITDMKLMYGGYGPPRDFVGGFGWIDDN H" CDS complement(join(65304..65506,66084..66207,66254..66360, 66603..66927,67873..68307)) /gene="CBG25692" /locus_tag="CBG_25692" /standard_name="CBG25692" /product="Protein CBG25692" /note="Predicted" /db_xref="InterPro:IPR020683" /db_xref="InterPro:IPR036770" /db_xref="UniProtKB/TrEMBL:B6IKP8" /protein_id="CAS00478.1" /translation="MKDAVETLEDIIDLADEVEKAKKDKVMDDLVKFWKDSVEYAKEL KKVDKAMKKFAKEVEESEPDWKMFRQLDYMEPLLEKSIAGIEDLAGLNQVHELRNEVE TIIKSEKTVTEVIKYVKGPTEIIILDVVFKDFRKSAKNLTLITMQDARLPMNAMDSKG QTGLYKAVLAKKWYRVKDLLENGALVDATCGPYLRTALFELVLMKDKEHAKDFLDAGA YILQPDVAGYYPEQYADEGGFMLLFDGYSKENQRKRVIPPNTPRPYKILVVDKDYIPS NERKNLPKRIRKKITWGYNESMDLNKFTHIVVPQKYSKKENILTLEDDDLFIWKSWKT ETEKYSLAPFRFVLECIARYQILPIGSTVIQMNEENGADGVEGTKSKEAVNVPTTPTN VEPTP" CDS complement(join(68760..69124,69233..69243,69279..69324, 69658..70072)) /gene="CBG25693" /locus_tag="CBG_25693" /standard_name="CBG25693" /product="Protein CBG25693" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKP9" /protein_id="CAS00479.1" /translation="MRKKNHNFMNKIKEMPIVEEVVEKLDPILNFDDDDMLDKLNPLD KFSDKLKDWKNKLKPKLPPGLQKLWDDVKRGEDLMKKAEGLLGFSLPGGLNGFLNDPY GSNEPYGPKELYGINGKYGPDGFFGPNSQIGPYGPKENTPFGSKGTHGLNGIFGPSKI KCQETIQEVYGKFKEKFVDLLKDNIPVKLKDLFGGKLDKLKKTLNKAKDLFKAIDDAV EKIQELPKSDPEKKAKELFRKTRKVKREKLNLTRELMFPQRTGQLPHLPQLELLKELR CL" CDS complement(join(71267..71550,71649..71751)) /gene="CBG17772" /locus_tag="CBG_17772" /standard_name="CBG17772" /product="Protein CBG17772" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XRR9" /protein_id="CAP35344.2" /translation="MGLNGNVKDMLTASNAKKGLTLGASIYNNPVGLAHPVNLVKNVV KDVIGPVGKVVIGVIGFFGGFFGGLFGGGGPSIPDILNPVIQRKEAFDKIVSGDIKGG LEQLKNFAGTQEEYKEMIDKFKGGGT" CDS 72240..72494 /gene="CBG17773" /locus_tag="CBG_17773" /standard_name="CBG17773" /product="Protein CBG17773" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XRS0" /protein_id="CAP35345.2" /translation="MLNSQIKSIWKSDQEKYTAVPFRFVLECIARYQILPIDNKIVPL EVGGKSMESTKRSDEKSNDGPGSTTRGSTTGSTSKTQISV" CDS complement(join(73199..73375,73670..73834,74139..74389, 74471..74636,75303..75971,76026..76127,76474..76578, 76632..76729,77304..77386,77454..77710,77756..78088, 78314..78436,79245..79367)) /gene="CBG17774" /locus_tag="CBG_17774" /standard_name="CBG17774" /product="Protein CBG17774" /note="contains similarity to Pfam domains PF05649 (Peptidase family M13) , PF01431 (Peptidase family M13) contains similarity to Interpro domains IPR018497 (Peptidase M13, neprilysin, C-terminal), IPR000718 (Peptidase M13, neprilysin), IPR008753 (Peptidase M13)" /note="Predicted" /db_xref="GOA:A8XRS1" /db_xref="InterPro:IPR000718" /db_xref="InterPro:IPR008753" /db_xref="InterPro:IPR018497" /db_xref="InterPro:IPR024079" /db_xref="InterPro:IPR042089" /db_xref="UniProtKB/TrEMBL:A8XRS1" /protein_id="CAP35346.2" /translation="MFSCRMPFGNDPPDYVHLRSNESQMQLITISENSDTPTPRLKKM PRPLPSQNDIPLSSSSGSPCFNAPARDEAPAVIFIPGKKFQGTFRWWKSRTTMEKLLI PTMLLFCLLTAVLLAVIINTDKRIEAIKADHATQTEKSSEKAPVAPAAPPLVPDSEAP PTTTIQPIPTSFEKPKKPEVCSTPGCVRAATHFLNAMNTSVNPCEDFFEFACGQWNDQ HPIPDDMFAFGTFAYAREQVRQQLRVLLEQEVVTESESINMARATYRSCMNKTQLDEL KTGPLIETLTELGEWPLLHESWNKTTFNLTNLLVNSRRDYGVDVFFQLYIYADSKNTS RNTLFIDQSTLALGRGTRDYYLNTTLFSSHMTAYRKYLRNIAQILKADGNLTRNDADM NADIEKIIDFEIELAKIIVAEDERRNNTRLYNKRAIRDLYSLLPQVDWVPFFQSIAPT DLIDLFHNDTEIIICEIEYLRQISELLEKTDVGLLTNYVLWRVVQSNVRYLDERFEDI KQVRQTSGTSKFEKELQDFLKVMTGQQQSPPRWKDCAQVPSTVLPLAAGAIYVQAHFQ ESDKYEALRMITHLSKSFTDLVRKNDWMDEETKKVAIEKANSMINNIGYPDVTNDIPL LDKQYVGLHISEHDTYYYIMKKSVVWMQSREFQKLTKPFDKHEFDISPAVVNAFYSPE KNAITFPAGILQPPFFSGTFPKAVNYGAIGAVIGHEITHGFDDQGSQYDKDGNLHNWW SDSSLQAFDKRRRCIVEQYGNYTVPKTSFRVNGKLTQGENIADNGGVKEAFQAYQNYV HENGEEPRLPGLQQYTNEQIFFVSYAHFWCGKKKEAAAMQQVLTDEHSPEVFRVIGVL SNMEAFADVYKCPKNSPVNPDHKCIVW" CDS complement(join(85287..85388,85823..85854,86717..87080, 87186..87374)) /gene="CBG17775" /locus_tag="CBG_17775" /standard_name="CBG17775" /product="Protein CBG17775" /note="Predicted" /db_xref="GOA:A8XRS2" /db_xref="InterPro:IPR019422" /db_xref="UniProtKB/TrEMBL:A8XRS2" /protein_id="CAP35347.1" /translation="MILAFLVLFENRSSLIVNNIFRITNNSTRSFWIFFNITGCMLPF IPVYFNLPDSGEARVIMLKSLPCPPKYFFAENILVLPSDGFWYTYLSASFLVSSGILF LQILFFTVCCLYYLFYAKSPQVSPETRRLQIRSFFGIVLQTTIPFLLVLIPVMLLTIN SNPEIFDQSKNNFTFLPMVIHKGIDPDKAKITGLKALPCPPKYFFTENILVFPTDGFW YTYLSVTSLF" CDS complement(join(91604..92008,92056..92430,92480..92647, 92693..92869,92919..93044,93090..93170,93582..93752, 93800..93889,93974..94102)) /gene="CBG17776" /locus_tag="CBG_17776" /standard_name="CBG17776" /product="Protein CBG17776" /note="contains similarity to Pfam domains PF11569 (Homeodomain leucine-zipper encoding, Homez) , PF00046 (Homeobox domain) (2), PF05920 (Homeobox KN domain) contains similarity to Interpro domains IPR008422 (Homeobox KN domain), IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:A8XRS3" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="UniProtKB/TrEMBL:A8XRS3" /protein_id="CAP35348.2" /translation="MPSRRVERPRKDTTSHQGTSEGIALKRRRLPDSSASESEHDVQE LRPKRNSARHVIYNEHDSDFEDSSDSDDTVVEKTENEQIQHSQKRKRNNYTEEQREIL HAMLSQTHNPSEEQRKKLAEETNLSTRQVRKWFDNKRQENPEWVKARESNPEWVKRRE GILSGEKKLRMEQVFAINRRPDKETIAALVSELGITKEKVEGWFSTKRYRNPIAEEVP LLLCEEDAKPILMEFFKRNPNFRDYKNAELKEKTGWPRHRLREFFETSRQENGIVDSP LTYDKAEPILRQILVEDPLFSDYQNVELKGKIHWSSRKVEEWFRRQRHLKKQNQFTTA METFFQTQQFLEKPNKALESESGGTRRRVNIGILSYSVINNLQIFNWLENKRKTTLES FLKKEIMLNEMPKEMATFERLYEKYDAPTDEDVILYIEKKENVSGDSFTVYLVERWTV VKKLQPGDVNAGEDDFADPLDEEYPNDPEFDYQMNEHQEEDDMESEGYEIGTPDEALL DEDVKDLTLFGNPREDYQRPPIVNHIKNEVDDFGDETQNMPRFVPAPGYRDQSQELDV EEKFIRS" assembly_gap 98560..98870 /estimated_length=311 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(101132..101240,101289..101420,101631..101738, 101826..102060,102105..102212,103163..103229) /gene="CBG17778" /locus_tag="CBG_17778" /standard_name="CBG17778" /product="Protein CBG17778" /note="contains similarity to Interpro domain IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:A8XRS4" /db_xref="InterPro:IPR013087" /db_xref="UniProtKB/TrEMBL:A8XRS4" /protein_id="CAP35349.2" /translation="MTIVVKTPAGSAFTSLVAFLAEKQMEFAVTNDGPVADSEASNAP QASEEEPHMVRGSVKREEPEIDAPPNMERVARNKRKNLAYRNQPQTSEDQSRLPTKRI KREKPEVEIIIPNEELGTPKVENASSSEAAESMEMDFPDVEEEMGDLEEQPVSDKKSS SSTKMIECRLCNKKVIKSNSFYHKVHAAAHLCLKTWKCTVCETMFAQSASGKPHFLSI HPGIQFVPLVRTITEEDEEQLRQLVEKCFPSARN" CDS join(<103550..103763,105407..>105684) /codon_start=1 /gene="CBG17779" /locus_tag="CBG_17779" /standard_name="CBG17779" /product="Protein CBG17779" /note="contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domain IPR001304 (C-type lectin)" /note="Predicted" /db_xref="InterPro:IPR001304" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="UniProtKB/TrEMBL:A8XRS5" /protein_id="CAP35350.1" /translation="IKFIFLLFSFFVLVQSACFDNGDKEVRGLCYKFVPQKLAYEDAR NWCHYQNPVTSSYLAYVPDASTSSFLASYARTAFGYNNVNFWIGLNRNNSNRQWFWDN GTPVGFTYFDFLGSQNYAAESTVNSKWNTFMDTEAFYFACSYDPQAPPTFAPVSTPPV PTTT" CDS complement(106034..106066) /gene="CBG25694" /locus_tag="CBG_25694" /standard_name="CBG25694" /product="Protein CBG25694" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKQ0" /protein_id="CAS00480.1" /translation="MNPKKKCELF" CDS complement(join(106217..106339,106389..106511, 106738..106929,106973..107074,107130..107261)) /gene="CBG25695" /locus_tag="CBG_25695" /standard_name="CBG25695" /product="Protein CBG25695" /note="contains similarity to Interpro domain IPR000718 (Peptidase M13, neprilysin)" /note="Predicted" /db_xref="GOA:B6IKQ1" /db_xref="InterPro:IPR000718" /db_xref="InterPro:IPR024079" /db_xref="InterPro:IPR042089" /db_xref="UniProtKB/TrEMBL:B6IKQ1" /protein_id="CAS00481.1" /translation="MLINLAKLGKYDNGLFTFLPQSAPWILVVPAIERSEPGEFLRNN GIEKILEANGVQFDQQTLDDDFDEFMTFYEKIRRIPVDTQSMNTGHITEQIERNQIPS IDFEKIVENLIDSQKKKAVEMVKNKTLIHKIVFFFGKNDNLETLIQKTSKRVLANFLI INYIDLFTKSLLIDPDDVGKCDEMATDNLPEAGFSVIVKNHFDRENIQIVSDLVEEIK IVLKN" CDS complement(join(108772..108945,108989..109213, 109827..110077,110120..110528,110578..110697, 111017..111211,111261..111362,111426..111559, 111608..111716,111762..111856,111905..112040, 112501..112824)) /gene="CBG17780" /locus_tag="CBG_17780" /standard_name="CBG17780" /product="Protein CBG17780" /note="contains similarity to Pfam domains PF05649 (Peptidase family M13) (2), PF01431 (Peptidase family M13) contains similarity to Interpro domains IPR018497 (Peptidase M13, neprilysin, C-terminal), IPR000718 (Peptidase M13, neprilysin), IPR008753 (Peptidase M13)" /note="Predicted" /db_xref="GOA:A8XRS6" /db_xref="InterPro:IPR000718" /db_xref="InterPro:IPR008753" /db_xref="InterPro:IPR018497" /db_xref="InterPro:IPR024079" /db_xref="InterPro:IPR042089" /db_xref="UniProtKB/TrEMBL:A8XRS6" /protein_id="CAP35351.2" /translation="MALKEKCSNPLMSLVIILMLLVLALITAVIVLRLDKNPRISGPP EELRNATNSPESLNPQKNKLSTLKPSDPPKIQPTNPTNSRPNIPNFKPRNVCESPECI TLAQQLHNWQDPKIDPCVDFYKHSCGKYIEHTVIEGTISSKKSKIINSLIKEHLIKNE PTDSIAEKSLKMFYQKCESIKTSEDDFEENLEQTFQDLLADIKSIGSWPLLEWDESKF DLNETLINLAKLGTYENGLFTLINPGAPWMVVAPITDGGAYDLRLRDKGIKRVLEENG IPFDDETVNKDFDDFLKLYRKLREFPIENPMEVDQISIKEQVVKDQFPSIDFEKILEN LVDSGNKNAMEMVKSRTVIHKTNFFFGKNESLDTIIQTTPKRVLANFLIFHFIDSSAS SFKNQFNIGNCDEMATDNLPEAGFSVIVKNHFDRENIQIVSDLVEEIKDSFEEMIQES TWLHEKTKKAGIQKLQKMKKTIGYPEEFENLDEIYENLNLLPTDSFYTMQRKIDRLRG EMTMNFVALETLLDPSNNLLETNARYSMLQNYLMIMVPFMDDPLFDSTYPKYAIMAGT GSVLAHEIGHGFDEMRSGFNENGKRKNWWQKEDSEEYKRRMECLIDQYNNYDDPDFGK GRIMLKIEILQHYSNPIPIEFQNFNRTNTIGEMLADGFGMDTAWRVVRKLDMEKEPKI IGFDNDNTRKIFFRVAALSFCAPRDTEDIDYVAQREHPTDSFRVNGVFSNMKAFAETF NCPVGSPMNPKKKCELF" assembly_gap 109470..109479 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(113425..113760,113808..113943,113993..114196, 114322..114467,114682..114771,115630..115767, 115866..115973,116017..116268,116320..116479, 116524..116774,116816..116974,117022..117195) /gene="CBG17781" /locus_tag="CBG_17781" /standard_name="CBG17781" /product="Protein CBG17781" /note="contains similarity to Pfam domains PF05649 (Peptidase family M13) , PF01431 (Peptidase family M13) contains similarity to Interpro domains IPR018497 (Peptidase M13, neprilysin, C-terminal), IPR000718 (Peptidase M13, neprilysin), IPR008753 (Peptidase M13)" /note="Predicted" /db_xref="GOA:A8XRS7" /db_xref="InterPro:IPR000718" /db_xref="InterPro:IPR008753" /db_xref="InterPro:IPR018497" /db_xref="InterPro:IPR024079" /db_xref="InterPro:IPR042089" /db_xref="UniProtKB/TrEMBL:A8XRS7" /protein_id="CAP35352.2" /translation="MAGSIKKAKTTKTKTSKTTTQTGPKKSKKSTHPKRSEKKHENSN SPKKINGKKCILYGIPILIIFALVAALIVVLTLGNVNFGEVKEEIKEEDKKEVEVCKT PECIMLAHHLSNWKDNSVDPCKDFFKYSCGKYNEHNVVEYSQLTKKTLILKGLIKEFL KKNKPSNSKTEQLMTHLFRKCEESKDESIKDKIEKERIEDIKKDALKIGWPLADPTWR ESSFDLAELLEQIPTILDGERNEIGYGIFNIWIPAAQKIFIGATSESFTDFGTVKKVI LKVLGKDASSNLDNKVKEINEFSKELRAIDASIPLSDDPNQKYSNNFKEMNDALPVFD YLIKSLLTKGSRSWRKISDLVYKDKRITANYLVYKYVSNSLRFTPGYSECHQVVINNL PLPSPRVFIRNHFDKGALKDVDKLVEDIRSSFIEMLEKSEWIHEKTRSAAIRKAKAMK KTISYPGELEKPGALDKHFNIQLDPSDSYYITMRKIDGASMNLLMDYVSSDFAMGPHF SLSSNAVHSFFGNSINIYAPIMDDPLFHTSFPNYAKIAGIGSIIGHEIGHGYDIKGIN FDENGNLKTWFDGADQREYEKKAACLTNQYNNYDDPSFGKTLNGTLTVGEMMADEMGQ DAAWRTFKKLDLSQEKRIIGFEDYSIEKLYFQIEATKRCSPRSPLTLEEQLKEVHATN SFRVNGVFANEKAFAEAFNCPTGSPMNPVKKCTMF" CDS complement(join(118404..118547,118589..118839, 118883..119042,119638..119889,119934..120044, 120086..120274,120319..120417,120762..120907, 120991..121194,121245..121377,121421..121705)) /gene="CBG17784" /locus_tag="CBG_17784" /standard_name="CBG17784" /product="Protein CBG17784" /note="contains similarity to Pfam domains PF05649 (Peptidase family M13) , PF01431 (Peptidase family M13) contains similarity to Interpro domains IPR018497 (Peptidase M13, neprilysin, C-terminal), IPR000718 (Peptidase M13, neprilysin), IPR008753 (Peptidase M13)" /note="Predicted" /db_xref="GOA:A8XRS9" /db_xref="InterPro:IPR000718" /db_xref="InterPro:IPR008753" /db_xref="InterPro:IPR018497" /db_xref="InterPro:IPR024079" /db_xref="InterPro:IPR042089" /db_xref="UniProtKB/TrEMBL:A8XRS9" /protein_id="CAP35354.2" /translation="MVGLKKSKTPKTTTQTGPKKSKEPKTGSMPKSTPSKSEKSNSPK KRNWKKLILYGTPILLILALVAALIVVLLLGKFGGVEVCETKECIMLANHLHNWKDDS VDPCQDFFKYSCGKYFEHNDAEDQMTKKNYILFGLIREFIKKNKPTSSKTEKLMAHLY KKCEDTKDGNLKDQIEKERIEDIKREAMKIGWPLADPNWDESSFDLADLLNKIKSSIG GERNEISYGIFKFIIPAAPKVFIDATSEYFNNTEDVKNTLSLVLGSAAFRDQSQLDDR VKEIIDFSHALQDIVKSTPQPENLDEIMFNNFKQLNAVLPVFDYLIKSLLTKGPRSWG KVKNKIYGWNSFLSKVRRISELVYKDKRITANYLVYKYVSNSLRFKPTTDTKCERIVA HFLPLPSLRVFIRNHFDKGALKDVDRLVEDIRSSFIEMLEKSEWIHEKTRSAAIRKAK AMKKTISYPDELEQPGALDKHYSIQLDPSDSFYLTMRKIDLASMKLMMDYVSSDFPMG PHFFLTTNAVYAPLGNSINVFAPMMDDPLFHTSFPNYAKIAGIGFIIGHEIGHGYDIN GINFDENGNLKTWFDGADQREYEKKAACLTNQYNNYDDPSFGKTLNGTLTVGEMMADE IGQDVAWRTFKKLDLSQELVRSAIIVTTCKAVG" CDS complement(join(125904..126311,126507..126620, 126665..126736)) /gene="CBG17786" /locus_tag="CBG_17786" /standard_name="CBG17786" /product="Protein CBG17786" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XRT0" /protein_id="CAP35355.2" /translation="MNQRNVGEDAQELRLRDRIMQLRQSIRTLELERQRIIEDVRGAE PQDVEVLDKVRGVMEHTLLEWSIARNERIRHLQQFGDLPPDLPEIPLNPVNSIVRDNR FPRLLRQLLRPPNAVRPPGRLIPGYQEGPAPRFDVWAPRFIPELREGPRPVVAAPEAP VVGDQGRVVGPEGPREVQPEEDPEDWIEVVGGPHPQN" CDS join(127689..127739,127792..127833,128739..129227) /gene="CBG25696" /locus_tag="CBG_25696" /standard_name="CBG25696" /product="Protein CBG25696" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKQ2" /protein_id="CAS00482.1" /translation="MNNADRIVEAQQRLAELRQQEDRDIAAFNPGRQQQREVENLVVR MELQQLLEMIEDLDYVISLEERRRELERRQVEGNNGQNVAGPRNEDLMERLDFLRNEL DARQEEFHAIGGPLRGIPPPPHPHDFGLLRGDEDLDEMFQIIMRNAGMRQEEREAREL VMQLRIDELRRQLDEENREREANEQPPPNPPQE" CDS join(130549..130623,131046..131471) /gene="CBG25697" /locus_tag="CBG_25697" /standard_name="CBG25697" /product="Protein CBG25697" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKQ3" /protein_id="CAS00483.1" /translation="MAQDNLEGQNEELRRIQQQNDELERQLLNQRLQVQQDHLNLVQN LPPWPGLPMFPPLPRAPLNEREQVARDLEELLQMIEDLDYEISLEERSRALQRQGILP AARPARDLDQLRQRVDQLAQPLAQMVPALNAMIHQLGQQIPGLRELNAAQRAQPPPPQ PPAQNN" CDS join(132214..132228,132430..132565,132624..132985) /gene="CBG17789" /locus_tag="CBG_17789" /standard_name="CBG17789" /product="Protein CBG17789" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XRT1" /protein_id="CAP35356.2" /translation="MNQQNTIRALQAIRALGQKILKSEGDLDRCFHLLFLDGLQHGLV RFTAWIEDQERPENRNPEEQRQEEGPENQEDPDNQPQILLVIRRPAVTAPEAPVVERP APEEQREVVGLEGQREAQPGEQPDPNVFFIPPERRVGDDGVPLPRNQDEPRQEDLEGQ ENRRPEEPRQ" CDS join(133569..133640,133715..133813,133938..134903) /gene="CBG17790" /locus_tag="CBG_17790" /standard_name="CBG17790" /product="Protein CBG17790" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XRT2" /protein_id="CAP35357.1" /translation="MSQENGGEDALELELRARIMDLRRTIRGLERQRRVVLPMVLEPM VVALFYQMAFEESQRQRIELDTAERFYRDTYPNLLERLNLQEENDEVQEDLLDEEHLN AVIEVFHYMQQRGQLPPEIPEVPVNLVEVPPLENVQIPPPPLAIRQFPVAEAQGNPVV APQQLGDQEFRERFLEAERHAERRAAAQINLVPPNLIRLERLARRRIENMNAAPLVRE QILVRQRRVEAAAHRENQDPENFIQVIRAENRQNQDEPRQEDQEGPENQNPEEPRQEE GPENQAVPENQPQILLVIRRPAVTAPEAPVVERPAPEEQREVVGLEGQREAQPGEQPD PNVFFIPPERRVGDDGVPLPRNQDEPRQEDLEGQENRRPEEPRQ" CDS join(136324..136395,136470..136568,136683..137353, 138006..138075,138151..138246,138337..138999) /gene="CBG17791" /locus_tag="CBG_17791" /standard_name="CBG17791" /product="Protein CBG17791" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XRT3" /protein_id="CAP35358.1" /translation="MNQENGGGDAQELELRARIMELRRTVRGLERRQRTALPMELEPI VVAMFYAVGLEELNRERRELDTAERFYRDTYPNLLERLNLQEENHEVQEHFIDADFLN AVMERARQMQQFGEQLLRELHEVAFNPVEVPPNPPVPPLENGRIPPPAIRDFPVAEAQ GNPDIAPQQRGAQEFMEWFLEEMNAAPENLIQVIRVDPRQEAQEDPENRNPEEPRQEE GHENQPDIQEELLNPIEVARAGRHLNHAQLPRLHRPPPAIRQFPAAGAQRNPDIAPRR LGDQEFKMNQQRDAQELELRAQIIELRRRIPELEMQQNAAVPRGFEPIAAVFYEVGFQ ELQRQRTELDNAERLYRATYPNLLERIDIQENNHEVQERLNDIERGIDVNERAPPRLQ QLGEFPPDVRIVPPNPPVVEPRIVGESRRRRWEEIQIQYPENGPLERDGIPLIPQLHL PRPPPAVRQFPVAEAQRNPDIALPQFGTHQDFLEQILARQRRVEAAAHRENQDPENFI QVIRAENRQNQDEPRQEDQEGSENRNPEEQRQEEGPENQEDPENQPQN" CDS join(140002..140073,140205..140300,140383..141231) /gene="CBG17792" /locus_tag="CBG_17792" /standard_name="CBG17792" /product="Protein CBG17792" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XRT4" /protein_id="CAP35359.1" /translation="MNQLNVGEDAQELQLRARIMELRTTVRDLERPENAELGRGLGPL EALFLDGLQHGLNRERRELNNLERFHRATYPNLLERIDIEDEIHDFQEYLIDLEYLIA RNERIRHLQGLGELPPNIPEVPFNPVEEPPNPPAVEPQNARRNRRRRWEEMRMQHQAM EALEPPAIRDFPVAEAQGNPVIAPQQLGDQEFVEQFQAWERRAQRQAAEMNAVPADFI QVIRVEHRQNQDEPRQEDQEGPENRNPEEPRQEEGPENKEDPENEPQILLDGRRPAVA APEAPVVEGPALEEQREVVGPEGPHKAQAGEQPVPNVFFIPPERRVEEGPENQGEPDN QPQN" CDS 141818..142246 /gene="CBG17793" /locus_tag="CBG_17793" /standard_name="CBG17793" /product="Protein CBG17793" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XRT5" /protein_id="CAP35360.1" /translation="MASITAAYDFKYFPRYGKWTKEMQMELDEHSRRMVKLMNHVQDL YKSNSQKKKDQQREDTDADCMIAPESPVFSQSPSTSPAPESPCQSTSPQVPAHQEAMP MEQNYPPVNCTVYYYPTPAECQYSPVYPGIKNQGCTYYHH" assembly_gap 143149..143530 /estimated_length=382 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(144497..144712) /gene="CBG17794" /locus_tag="CBG_17794" /standard_name="CBG17794" /product="Protein CBG17794" /note="Predicted" /db_xref="InterPro:IPR008498" /db_xref="UniProtKB/TrEMBL:A8XRT6" /protein_id="CAP35361.1" /translation="MADKSAYMSAGGYGSGYMGSNASSSGYAREDYASGGSGGGASNN NQGSGGGSNPGQQVFKARTDQSCYLGP" CONTIG join(CAAC03004204.1:1..12531,gap(10),CAAC03004205.1:1..18169,gap (309),CAAC03004206.1:1..12808,gap(5428),CAAC03004207.1:1..1673,gap (334),CAAC03004208.1:1..47297,gap(311),CAAC03004209.1:1..10599,gap (10),CAAC03004210.1:1..33669,gap(382),CAAC03004211.1:1..2402) //