LOCUS HE601428 1521649 bp DNA linear CON 17-SEP-2015 DEFINITION Caenorhabditis briggsae AF16 supercontig from assembly CB4, cb25.fpc4321. ACCESSION HE601428 CAAC03000000 CAAC02000589 VERSION HE601428.1 DBLINK BioProject:PRJNA10731 BioSample:SAMEA3138181 KEYWORDS . SOURCE Caenorhabditis briggsae ORGANISM Caenorhabditis briggsae Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1521649) AUTHORS Howe K.L. CONSRTM WormBase Consortium JOURNAL Submitted (03-OCT-2011) to the INSDC. WormBase group, European Bioinformatics Institute, Cambridge, CB10 1SA, UNITED KINGDOM. REFERENCE 2 (bases 1 to 1521649) AUTHORS Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K., Durbin R., Waterston R.H. TITLE The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics JOURNAL PLoS Biol. 1(2), E45-E45(2003). PUBMED 14624247 REFERENCE 3 (bases 1 to 1521649) AUTHORS Ross J.A., Koboldt D.C., Staisch J.E., Chamberlin H.M., Gupta B.P., Miller R.D., Baird S.E., Haag E.S. TITLE Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination JOURNAL PloS Genet. 7(7), E1002174-E1002174(2011). COMMENT Details of C.briggsae assembly version CB4: To improve upon the C. briggsae nuclear genome assembly CB3, 167 AF16/HK104 advanced-intercross recombinant inbred lines were successfully genotyped at 1,032 single nucleotide polymorphism (SNP) markers. The resulting data were used to estimate high-density genetic maps. Sequences were assembled by combining the physical and genetic positions of the SNPs to inform the process of ordering and orienting the cb25 supercontigs into chromosome assemblies. 37 of the cb25 fingerprint contigs were split into 100 supercontigs to resolve discrepancies between the physical and genetic orders of SNPs. 638 sequence supercontigs comprise the CB4 assembly. The total nuclear genome content decreased from cb25 to cb4 because of the removal of three supercontigs containing mitochondrial genome sequence (totaling 20.1 kbp). Assembly_name: CB4 Assembly_program: Phusion Seq_technoloy: capillary (whole-genome-shotgun) Seq_coverage: 10x Annotation details: Coding seqences below are the result of integration and manual review of the following data : computer analysis using the programs Genefinder (version 980506; P. Green, unpublished data), FGENESH (Salamov and Solovyev 2000), TWINSCAN (Korf et al. 2001), and the Ensembl annotation pipeline (Clamp et al. 2003); similarity to other proteins from BlastX analyses (http://blast.wustl.edu); sequence conservation with C. elegans using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000); individual C. briggsae GenBank submissions; and personal communications with C. briggsae researchers. tRNAs are predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964). FEATURES Location/Qualifiers source 1..1521649 /organism="Caenorhabditis briggsae" /strain="AF16" /mol_type="genomic DNA" /note="supercontig cb25.fpc4321" /db_xref="taxon:6238" CDS join(1051..1316,1363..1577,1627..2177,2229..2714, 2761..3105,3156..3233) /gene="Cbr-deps-1" /locus_tag="CBG_22004" /standard_name="CBG22004" /product="Protein CBR-DEPS-1" /note="C. briggsae CBR-DEPS-1 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1B4" /protein_id="CAP38683.2" /translation="MEDLPKPIPYDYEALVIRPCGAEYQHYETDLVLILKSQRVCFVF PNDNNNICFQERYTKNRIYGISREAFLPPVIEKSYDNFELAKNLERRYATPLKFGDIV IFNDSDINHHESLILRFKREKPLYEVSSNNFGPLLRIGGVISPMKLNTFWTPLEDLVI PTDIAPLAEPNVWLTAWIRIETNMLHSKDNYHLEYTFDSFAGCDPSDQARVAAAPWHS RSIDSQFSMLPAEPTPCESDDEIDLEPRKDIYVKEDKWAEKINRQLGLFVGGRLLLCK DLPQYDFIIPLLKPVAVAPGEDRTFIYPSIGEYFHFCAVWSIHHKGFLVTEMLPFQIL RGYSTSVSGNILVRVNQASLGGLFTDSDSSLGLLDDPYHTLCFSEFHPAAHGGLKALV EVHAVRSSENRSVRWRIVRTIYEDDHVSRFASWLAAATFCVGPIHGMVISKDTVISGD YPSVYFRLPPNSNLIAGCGVRFRGRRAAGVNSEIMIEEIHTNPKFSARKVIGQEENLL FQVPLKMILGHEQLARNEVFGPVDMRQLDPPEDTDDGVFYAWVRESPTIDNCRRACTI MEVFSVALNTPLLPALSGSSRSGSRHSGSSRATLSSSSHGGSTSSRNSTRSINSNRFV GGPARSTPGSISNRGAPNDSDA" CDS join(5718..5804,6778..6942,7443..7523,8154..8613, 10159..10386,10454..10629,10935..11192,11861..11879, 12642..12771,12903..13083) /gene="CBG22005" /locus_tag="CBG_22005" /standard_name="CBG22005" /product="Protein CBG22005" /note="contains similarity to Pfam domains PF07859 (alpha/beta hydrolase fold) , PF00135 (Carboxylesterase family) contains similarity to Interpro domains IPR019826 (Carboxylesterase type B, active site), IPR013094 (Alpha/beta hydrolase fold-3), IPR002018 (Carboxylesterase, type B)" /note="Predicted" /db_xref="GOA:A8Y1B5" /db_xref="InterPro:IPR002018" /db_xref="InterPro:IPR019826" /db_xref="InterPro:IPR029058" /db_xref="UniProtKB/TrEMBL:A8Y1B5" /protein_id="CAP38684.2" /translation="MGGFTSKHSHLTAVHDATCGPVKGVGYDQEDGSVVEGFLGVPYA EPPIGALRFKKPIAHRRWEEPLECTKFGPRAPQNDELLGQFVNTVGKSEEHCLSLNVF TPKWESDEWPNGFPVMVFIHGGGFQVHSSSNYGCATIARNLCTKNVVAVTINYRLGVL GFFTTGDSICPGNMGLWDQTAALQWVQDHIASFRGDPDNVTIFGQSAGGASVDLLCLS PHSNRLFNRAIPMAGNAECDFAIRTSKQQATCVKSSQDFWDGREVVNDDSEGLLDFID NQPLYKLEMGINPRRGFRHSQAGSLYFVPNFDGDFFPKPLSQLREEVPKMQLMTGTTK YEGLFFIALGALSRNPEGIKKFMSRIFKKCDYGENSEEALELAYNFYFKGVHPKDQEK NIQQIVKFIGDYSINYGTYLFANKMSELDHDVYFYQFEYHNPGGFGIFRWLLPFLGEF LFSKFCILGLGSEYETGRKKPRVVYAIATLSLNGAPIPSVRGSTHCTEMRYVLGKGII SKFKPNESDKKMIEVMTTYFTNFAKYGSPNGQIDSDSGQWEKHDSFTPFRHFKIDLED SEMAEDYQDRRAELWDKLRALNVTRAQL" assembly_gap 5893..6305 /estimated_length=413 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 16985..17026 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(19689..19882,20587..20874,21213..21357) /gene="CBG22008" /locus_tag="CBG_22008" /standard_name="CBG22008" /product="Protein CBG22008" /note="Predicted" /db_xref="GOA:A8Y1B6" /db_xref="UniProtKB/TrEMBL:A8Y1B6" /protein_id="CAP38685.1" /translation="MGYPRFSGAAGEIQISFSAFLSLSLSLSLSLSSYCLSSNANSSA RVLFFSIHLTVLLLPLLFPPISVLCRLLTIDKNRRKSLKSVSISSTRAKIDIQKVDRK STFQKSMKVKIDEKSTKKSTFVDFIVREDYTAGDLETACGRGIFHEKQAIFIEFSTEK PSTKKNTPTTEEYEYDDENDDSEGVEYFESREHNDDTFGNDLAQIMKH" CDS join(22262..22333,22401..22499,22691..22954,28640..28744, 28934..29086) /gene="CBG22009" /locus_tag="CBG_22009" /standard_name="CBG22009" /product="Protein CBG22009" /note="Predicted" /db_xref="GOA:A8Y1B7" /db_xref="UniProtKB/TrEMBL:A8Y1B7" /protein_id="CAP38686.2" /translation="MDSFKRLQSKVFTSVSSLRKTDESPNEQIYNTKRCFVHVNYLSI AIAVVELSILIYQLANGSWGNSEHATVFTIAALLFLLVIGLLFVAIFYRIGNLLIPHI VMQILLVLCFLGLTFATLYALFHGATFQLLVVITNPQIAADSMTLLPAPMISTNVVSG FLTGLLVIFAVAYLLIAVLNTWCMYVVIDSYQLLKVQKSQTRAPSVEEYCAPKTIQLS LYPNQVIQATDF" assembly_gap 23779..28308 /estimated_length=4530 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(29784..29990,30048..30154,30204..30278, 30329..30428)) /gene="CBG22010" /locus_tag="CBG_22010" /standard_name="CBG22010" /product="Protein CBG22010" /note="contains similarity to Pfam domain PF04777 Erv1 / Alr family contains similarity to Interpro domain IPR006863 (Erv1/Alr)" /note="Predicted" /db_xref="GOA:A8Y1B8" /db_xref="InterPro:IPR017905" /db_xref="InterPro:IPR036774" /db_xref="InterPro:IPR039799" /db_xref="UniProtKB/TrEMBL:A8Y1B8" /protein_id="CAP38687.1" /translation="MEIGPDGKPCRACVSVEDMMKKGREMAEKMKKKEEEKNAPGTST GAKLHGCPVDKDELGRSTWNLLHTMSVYYPEKPTEDDKSRAKSFMTILGQTYPCDFCA KDLRKDLKSDPPKVENRQEFALWMCQLHNKVNEKTGKQAFNCKNVMERWRDGWKDGSC DY" CDS join(31400..31474,31519..31629,32433..32933) /gene="CBG22011" /locus_tag="CBG_22011" /standard_name="CBG22011" /product="Protein CBG22011" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1B9" /protein_id="CAP38688.1" /translation="MSQKVRDLAKKIDDILNLDSKLKRDREIPTLTKFYNHLENDGDL VPKGLAELTVGIMKLAKREIEEVDKKWKKTEHDDIPKSASKYKTDPFKTPVFEISTRH LKMCCRQPIDHNTVPWIPYCLSILSYDFILSADGLEGDVSNVLHICAMASRIQWADHS HLQKLWDFIWRRIETADLKEQALRSYCEVAVEMMKNVDYEIYETSSHQLVRRAIRALK MGNHGISQAA" CDS complement(join(33629..34654,36097..36570,36707..36922, 37656..37781)) /gene="CBG22012" /locus_tag="CBG_22012" /standard_name="CBG22012" /product="Protein CBG22012" /note="Predicted" /db_xref="InterPro:IPR011011" /db_xref="UniProtKB/TrEMBL:A8Y1C0" /protein_id="CAP38689.1" /translation="MLPREELEDLAEWLKSIGHYDGPPDRLITDFSFLKTSSEEAETS PHYPPLYTHFDQILDDQFRNPKLNFEYIMYRNQSKAAGEWWMARQRAMEKLKKEEAKR LANDIKANAFWEELERSQHPDRDVEADQTTQMDKDYDPEEDKPMKKKKVPVKKKTEPV KKESTKRGKPGRPGPSSKPREELPGPSTQDVKEEISKLSKRGRPGPSKELPEPSKKPK LEIEEPKENVELQQTPKSNKIRKIYKCPECHKTSGQGTCICNGCHEWVHLKCAKNLKM ESGIEWVADIIQPSADQIAEAASEDFETQKWLESIGGSMDPPPNVITNFSFLESPKKE EGVSHEADEGYGSVEPEDFNQTSQEVEVESMPTFFDQIYRDIQNNPDMDIDYLITRNY SKAAGTLFLARQQAIANWDRCLHVKSREIRSLRVWDLPVTGKRERVKSARQLETEESE ARWQAAKKVKVEKVRQNASVAVQRIRFGEQGLPVKKVSARRRIPKNPVAKTQPETTCL ASKKSAALACRSPAQSATIVPRDPVTTVSISNPMPPLSLACPSSVRQQPKKKPSKHQC PVCQKPARSGTCQCFGCSGWVHFKCAAGAHLNYSSDFRCATCLANDV" CDS join(39581..39762,39940..40099,40592..40933,41680..41930, 43169..43525,43572..43693,44881..45116,46114..46550, 47350..47680,47737..47825,47876..48071,48467..48633, 49039..49301,49378..49563,49617..49666) /gene="CBG22013" /locus_tag="CBG_22013" /standard_name="CBG22013" /product="Protein CBG22013" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1C1" /protein_id="CAP38690.1" /translation="MHIAFFLLLCFSLLFPVFMYTYLSESLASSEKSATCPKHRHAKL RTLGGREQEKEEEQMGRWTSTRKYSIVVVVSFIVHKWGLETRDFILREVFELLDPLLS LINIKTNQSESEILTMQLVDDVIKLSMIETIDGHRSMNEKTEENVRKLVKFAIRESLR TMHRGYSMSPNFQISDEICRFLARWFLAERRVDTVEMDLDESSIDLKSDGRKFENHYL SLEGLSVCPDIPQKPLNFPGLIHLSFGSKCVNKHAAWNGAMQILNKILKSGRLNSQIV ESIVSILWEKRKSYTSEYLRTAFCALLATVIPQDVRFFDPKIYVFSQSPPFPSHETPI FRFGHLRMPSIDSILKYTLSLMPNVTSLPNAAILTENILKFRSKQVSKETIRLIWDTV SRTSPACFEVLRLLSALVSFTEFEENSRFANDENVGKWSLRKDVIEWLLIDPSAHSHQ LIHELCHYHPSFCYETDEPNTDDQLLRNLKTCHLLHFSSSTVPHKATVTQMRPTDAKI DEIVNYVDCKLKSMLSTELTLPVFVLSYEFSLKFPEVSFDFDLIYKRLPHLLQELEPT EFLQSIQNFSEWPEFLEFPPKFVADFDCLMAYFLKNVENQLIDMTKKWETNPGKIVET LADYCRKWPKMRGEMCKSMQFNRFVNNWILETEGDPYEMSNRFEKYSFLLSYRHLLKT RDTILCVFEEGGGGSRANHLLVAQSVTPQDLYIFNKLICSSFLRNLVPPRRVIGPSFD GPTVALYPKNLEFDQRSVKIYLKRLKKSPFLAQNIVRMILENRNDDTWHLHATVLKIV MEDEQLLTVCIATIPNMIRYLKMYQIHFPPKSLSVRFLIIDKSSITSCQKYLRKPKEN GHLISPINLITLFGCEKSTWKRMILQFWCQFEREPALVAERFYEFASESVDLGLQTRV VCILRALTSSEYCRNVLQDEQLKMAFDLTYRAIWMVLVKDQCSPEILELCDDSKLRND LLGYRIPQIPPGHIDDFRLYEMRVAFSVENFLKFGIESGEDTVDFMDFGLAEFYKQLN ENLTEEAIRGNEKRRLLYPLFFRKICVLGVQRMIGGSTADEFQEASKKEYGRLLYFFL ISKKCVFSSIFRFLEFSKKVQRYSNLTVTYQNLQ" assembly_gap 52299..52374 /estimated_length=76 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(<54692..54986,56728..56850,56895..57192,57887..58031, 58270..58567,59412..59583,59633..59721,59770..59856, 59929..60092,60297..60545) /codon_start=1 /gene="Cbr-atm-1" /locus_tag="CBG_22015" /standard_name="CBG22015" /product="Protein CBR-ATM-1" /note="C. briggsae CBR-ATM-1 protein; contains similarity to Pfam domain PF00454 Phosphatidylinositol 3- and 4-kinase contains similarity to Interpro domains IPR000403 (Phosphatidylinositol 3-/4-kinase, catalytic domain), IPR018936 (Phosphatidylinositol 3/4-kinase, conserved site)" /note="Predicted" /db_xref="GOA:A8Y1C2" /db_xref="InterPro:IPR000403" /db_xref="InterPro:IPR003152" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR014009" /db_xref="InterPro:IPR015519" /db_xref="InterPro:IPR018936" /db_xref="InterPro:IPR036940" /db_xref="UniProtKB/TrEMBL:A8Y1C2" /protein_id="CAP38691.1" /translation="KVLLQFHSICMGQLSKLEEYLETRSYRMKKQVIAEYEKQIEKKN STPRVSRGTSGGDEMKRTERVKKEMRLEKADVEKVEGLVVSAARKAIQSAFQALSCIS QLEDDEEAIRTSSLIVFPLIDVIYKYETDPGVVEALKDHSKTALPSKLWLCATSHLAS KCFAIEKTPISRYLSQILCHLVYDYPYHVLHTILMYEFDKNGAQVREFLRNIYSVKTK RDVDKLREVVAMMREAHVAYREIAKLQVKENIRIQRVERDGKTMLVWPRDLKIFKCKL DQLPIPTISQKIGAPGDLSTSNLITWRSYKDVFLLADGLSSPIIWEIQGSDGRWYKSV WKKEDVRQDVLVEQMFDVTNNMLEKRTLRTYNVVPLDTECGIIEFCGGSVSLKELLCG TNREGGLHKEMCSHEPSATQASRMMKEVQSDTSEMRRRVFVEVCQQYSPVFRHFFYRQ FPTAQIWRQKIDTYRQSLATWSVVCYMVGLGDRHASNILFDQKECTFVHIDLGMILEY SKRSLPVPEQVPFRITRDVLDPLLIEGIENGRLAEDCTKIMEKLKENNKVILGVASAI LRETMSNFREAEQSSGRPSYISEMAIGRLRDKLRGTDDGVTAQSSNLQIRRLLRDATS SDNLSRMFFGWMPFL" tRNA complement(55661..55732) /gene="CBG28679" /locus_tag="CBG_28679" /standard_name="CBG28679" /product="RNA transcript CBG28679" /note="C. briggsae predicted tRNA" assembly_gap 55883..56072 /estimated_length=190 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(61954..62211,62258..62400,62822..62999,63057..63163, 63868..63995,64129..64298) /gene="CBG22016" /locus_tag="CBG_22016" /standard_name="CBG22016" /product="Protein CBG22016" /note="contains similarity to Pfam domain PF03567 Sulfotransferase family contains similarity to Interpro domains IPR005331 (Sulfotransferase), IPR007669 (Protein of unknown function DUF595)" /note="Predicted" /db_xref="GOA:A8Y1C3" /db_xref="InterPro:IPR005331" /db_xref="InterPro:IPR007669" /db_xref="UniProtKB/TrEMBL:A8Y1C3" /protein_id="CAP38692.2" /translation="MNRYLKLLFAIIFTACILAYSNLFQFHGYCSYVNSEKQIFENST SPEFPKNLKLRDKTLENSLEICRGDNLKECIPPLMKYKQLYRTSRPNNLVACVIEKTF STFLTAIMCFLHDQKAFRESNRTLESDIYGERLCKDKNEFTELKKIEKWQKMSIFAVV RNPVDRFVSGFTDKCLREKVWRKYKSRCASCRTNLTCFVDKMYDRMMKFAKNPYKGID FDDSHFFPQSWRCEFSSHLVKYQILQLDGPNFTDQILGLLEERGVESDGIQFINASLH YRTPHSTQDSVERATVEETVLNSPYLLRKILQMYYFDFLLFGYRLPDIPVV" CDS complement(join(64535..64628,64978..65081,65660..65790, 65835..65911,66070..66212,66589..66901,67018..67300, 67441..67808,67942..68074,68188..68239)) /gene="CBG22017" /locus_tag="CBG_22017" /standard_name="CBG22017" /product="Protein CBG22017" /note="contains similarity to Pfam domain PF01390 SEA domain contains similarity to Interpro domain IPR000082 (SEA)" /note="Predicted" /db_xref="GOA:A8Y1C4" /db_xref="InterPro:IPR000082" /db_xref="InterPro:IPR036364" /db_xref="UniProtKB/TrEMBL:A8Y1C4" /protein_id="CAP38693.1" /translation="MRLRYLAISLLISLAAIKCHAQDENSEDVFDKPLSKDQTTPSGT LPDDFPLAVPQEELMNEGSDTFETSTEMIEISSNDTSLEVNPIQKTSVFSPITQLDGG VFNFSKATIEDDSQEDMDDSTEFHTTLTTTMETSTDSESSDDSTTTTTPIDVITFSSL PIERDEVADRRVLKEKEMATATRLATTTPAPSAVSDPSESEDEGETPFDQSALEGLFE QDGSVIDTSLTTDQTPAFPILKMAEEDSKILSNIPKKMVTEVSSTLESTQGTSAATET TVGSTETTQIASSESTIQETEATTQSTESASESTTSSESTTSSEDVTTSEEELSTIPA LKNSSKVFLPAKSIRTPIVFRILSLEFTEEFNDIQTGPSKKLAKDLIPSIAEFVNSIS GDGNFVNMEIRTLTKGSVIIGADLLTRKSLGDAQLAVDLLEAAFSRNNSMIADYKIDT LSITIDGMTSQAYIDSISTQTSSYSLSSLMIAIITFALIIIFGLALFIIMITTKRRRQ STMKLSMDDTIRSSTPDSDDTPHNVHLMSYGTTPRPSSQKPGPITKMQIDETQSPMY" assembly_gap 80020..81177 /estimated_length=1158 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 83953..92939 /estimated_length=8987 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 105629..105751 /estimated_length=123 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(107365..107520,107571..107654)) /gene="CBG22020" /locus_tag="CBG_22020" /standard_name="CBG22020" /product="Protein CBG22020" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1C6" /protein_id="CAP38695.2" /translation="MTQDGENRETHHIYVSAPPPEPQTSVGQPCRLEKEPLIEDEGKN DKIGESRTTYWKGCEFLKASGLCSSNCEFLASALY" CDS join(108496..108502,109587..109717,110718..110947, 111828..112037,112363..112443,113285..113393) /gene="CBG22019" /locus_tag="CBG_22019" /standard_name="CBG22019" /product="Protein CBG22019" /note="contains similarity to Pfam domain PF12906 RING-variant domain contains similarity to Interpro domain IPR011016 (Zinc finger, RING-CH-type)" /note="Predicted" /db_xref="GOA:A8Y1C5" /db_xref="InterPro:IPR011016" /db_xref="InterPro:IPR013083" /db_xref="UniProtKB/TrEMBL:A8Y1C5" /protein_id="CAP38694.2" /translation="MMISLTSASGTMCRICHVSSSTRSNPLISPCRCSGTLLFVHKAC VVKWLEMSTRKMVPSPRCELCGYDFKRGNIFQMKSLHVPIVDRASCLLNVLFLITILI MIFCGYFTIQFIQENALLKRRLFTHASTNTAYTWKRRGYFSGNGANSADGSDVSDGYF SRTPVSSLFDIKVVMCASMFLISFILALFTQYKAESTVFRCIFRFFVINQNWMIKDYD IKNDPEMAHRRLQKTSTSPASPPVALSASDMCLNVSA" CDS complement(join(113799..114171,115026..115195, 115945..116238,117133..117214,118839..118908, 119049..119169)) /gene="CBG22021" /locus_tag="CBG_22021" /standard_name="CBG22021" /product="Protein CBG22021" /note="contains similarity to Pfam domain PF00266 Aminotransferase class-V contains similarity to Interpro domains IPR020578 (Aminotransferase class-V pyridoxal-phosphate binding site), IPR000192 (Aminotransferase, class V/Cysteine desulfurase), IPR003248 (Phosphoserine aminotransferase, subgroup), IPR022278 (Phosphoserine aminotransferase)" /note="Predicted" /db_xref="GOA:A8Y1C7" /db_xref="InterPro:IPR000192" /db_xref="InterPro:IPR015421" /db_xref="InterPro:IPR015422" /db_xref="InterPro:IPR015424" /db_xref="InterPro:IPR020578" /db_xref="InterPro:IPR022278" /db_xref="UniProtKB/TrEMBL:A8Y1C7" /protein_id="CAP38696.1" /translation="MSLEGRKINFAAGPAKLPEEVLLKMQEEQLNFNGLGVSVIEMSH RSKEFGALLNETISLIRELMNVPDNFEILFMQGGGTGQFAAIPLNLKGSHDHADYIVT GAWSSKAAEEAEKYIKVKKVFQPSKPYVTVPDQEKWVHDEKAAYLYYCANETVHGIEF SPTAPESHNVPLVADVSSNFMARPFDFKDHGVVFGGAQKNLGAAGLTIVIVRKDLIGK QQAITPAVFSYKEMIANNSLYNTPPTGGIYTTNLVLKWIKSKGGLQAIYELNLQKSGL IYGIIDNSNGFYHCAVDKSYRSIMNVCFRIGGAAGNEDLEAEFLKGAAERNMISLKGH RSVGGIRASLYNAITLEETQVLATWMNEFQKAHSA" CDS join(<121242..121963,122632..122800,122803..122865, 122913..123002,123565..123758,123809..123941, 129247..129321,129560..129729,129751..130231, 131405..131541,131592..131733,132058..132291, 133017..133187,133261..133372,133797..133902, 134000..134285,135036..135160,135406..135532, 135716..135922,135969..>136064) /codon_start=1 /gene="CBG22023" /locus_tag="CBG_22023" /standard_name="CBG22023" /product="Protein CBG22023" /note="contains similarity to Pfam domains PF01501 (Glycosyl transferase family 8) , PF06427 (UDP-glucose:Glycoprotein Glucosyltransferase) contains similarity to Interpro domains IPR009448 (UDP-glucose:Glycoprotein Glucosyltransferase), IPR002495 (Glycosyl transferase, family 8)" /note="Predicted" /db_xref="GOA:A8Y1C8" /db_xref="InterPro:IPR009448" /db_xref="InterPro:IPR029044" /db_xref="InterPro:IPR040497" /db_xref="InterPro:IPR040692" /db_xref="InterPro:IPR040693" /db_xref="InterPro:IPR040694" /db_xref="UniProtKB/TrEMBL:A8Y1C8" /protein_id="CAP38697.1" /translation="YNFGISTASSLLDASEYPLLRFSIASRIFSPRIEVHRQISKKFQ PNSCKNTFFVYGNQVGCQLSELNFKEYSGNAEIFEFDHIFPMKSKANRTLIIYGVLGT AELKNMILEAKILVETRENLNFALRFLSLSSGTTKVSLSGYGVELALKNTEYKAVDHL TQELPENLHGLNFRILKNRHTDRHNELESLRENLEKLGEIVPLKQWQLKDLGLKTCER IQEDSMELEEIERVLQDFPIHARTISHRSLNESFTKPIQKFQKTLKSAGIGNGENLLA LNGRILSKSDSKIDLFELIERKTEKKVMDRLIEIGSVSEDSEIDYSKLLTLFDFSPIA ISKNAFDYRKTKPVFLNDLESFLSPYRSLHLLLQPFPSDQIRPIARNIFNLILFIDPF DSEDKLLDLAQKYLKGKVFIRIGLVPFFNENKWGVSVQEGVNSKEISKEARKIWKTNE DILKALKNGNEFLLKTGLGKGPQALLNGYPLDTSSSESFDAALFDNIQKQTLRLQLAL YQRLITDSVKIDDFWLKEETNPDLKTRVSMRIFSAKFEFFRIVKAFNERRFVELDSEA SENPENPTLAIIANFENTKNRLSITKWLKSLKFPLKIALISNPTTSSDSEDSSCPSDS ENLESAILRLENQESCIGARKFSNFLRKNEIKAGEMAVIFNGLVIGPFEENEKEQFLE IEDFEFLENLWKERGAKKTSAFLSQHFPNQDDVTIKFFSVLSKIYKKDVPRVAFDNFK DLENRNLIIFPPKNPESPYSTITWILNPVSREAQHLVSIVKLMSNVLNAKVEIIFNPS SELHEMPIKRFYRFVASEFLEFDENGKIKDQSAIFSNLPQKQLLTMSVETNDGWMIEV KKADDDLDNILLENTSGDVESEFSLEHILVEGQSQKSGTGDASDGLELELKSENTKYD TIVMRNLGYFQLKAEPGIWDLKIRNGTSSENFWIQKIDSKEVNGKITVVVDSFTRKWT QLVVEEIEDKKEQKEGSAMGRLMEKAKNFFSTPPPSETINVFSLASGHLYERFMRIMI VSVMKNTQSGKVKFWLLKNYLSPKFKESIPILADFYGFEYELVEYKWPKWLHQQTEKQ RVMWGYKILFLDVLFPLNVDKIIFVDADQVVRADLLELMDFDLKGSPYGYVPFCESRK EMDGFRFWKTGYWNTHLMGRRYHISALYVVDLKAFRKFAAGDRLRGRYDNLSADPNSL SNLDQDLPNNMIHEVPIKSLPQNWLWCETWCDDRSKKTAKTIDLCNNPLTKEPKLSSA QRIIGEWKELDEEISNVI" tRNA complement(124941..125012) /gene="CBG28929" /locus_tag="CBG_28929" /standard_name="CBG28929" /product="RNA transcript CBG28929" /note="C. briggsae predicted tRNA" assembly_gap 125103..125112 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" tRNA 125145..125216 /gene="CBG28817" /locus_tag="CBG_28817" /standard_name="CBG28817" /product="RNA transcript CBG28817" /note="C. briggsae predicted tRNA" CDS complement(join(125406..126275,126321..127319, 127868..127954)) /gene="Cbr-hsp-70" /locus_tag="CBG_22024" /standard_name="CBG22024" /product="Protein CBR-HSP-70" /note="C. briggsae CBR-HSP-70 protein; contains similarity to Pfam domains PF00012 (Hsp70 protein) , PF06723 (MreB/Mbl protein) contains similarity to Interpro domains IPR018181 (Heat shock protein 70, conserved site), IPR001023 (Heat shock protein Hsp70), IPR013126 (Heat shock protein 70), IPR004753 (Cell shape determining protein MreB/Mrl)" /note="Predicted" /db_xref="GOA:A8Y1C9" /db_xref="InterPro:IPR013126" /db_xref="InterPro:IPR018181" /db_xref="InterPro:IPR029047" /db_xref="InterPro:IPR029048" /db_xref="UniProtKB/TrEMBL:A8Y1C9" /protein_id="CAP38698.2" /translation="MSSCKAIGIDLGTTYSCVGIYQYGKVSILVEILANSDGNKTTPS YVAFTDTERLVGDAAKDQAARNPENTVFDAKRLIGRRFDEETVQSDIKHWPFAVKQKQ GKPMIQVEVKGEKREFSAEEISAMVLQKMKETAETYLGHNVKDAVITVPAYFNDSQRQ ATKDAATIAGLNAIRIINEPTAAALAYGLDKGITEEKNVLIFDLGGGTFDVSILSIAE GSIFEVRSTAGDTHLGGEDFDSRMLQHFMTEIKRKTGKDISPNPRAIRRLRTACERAK RTLSSSTEATVEVDSLFDGADFYSKITRARFEELCADLFRKTLEPVEKALRDAKMDKA RIDEVILVGGSTRVPKVQKLLKDFFNGKELNCSINPDEAVAFGAAVQAAVLSGVKDDT IKDVLLVDVAPLSLGIETAGGVMTNLIDRNTRIPAKASKTFTTYADNQPGVSIQVYEG ERAMTRDNHRLGTFELTGIPPAPRGIPQIDVTFDIDANGILNVSAEDKSTGKSNRITI RNEKGRLSQADIDRMVNEAKQFEREDAQQRDKVSARNQLEGYAFQVKQALDEHGDKLS SEDRSRAREAVEDTLRWMESNTLAEKDEIEAKDRELKAVCQAILTKMHQQESGGQGAN CGSTPGSGGFNPSNYPGGAGPTVEEVD" tRNA complement(128484..128555) /gene="CBG28837" /locus_tag="CBG_28837" /standard_name="CBG28837" /product="RNA transcript CBG28837" /note="C. briggsae predicted tRNA" tRNA 128747..128818 /gene="CBG28242" /locus_tag="CBG_28242" /standard_name="CBG28242" /product="RNA transcript CBG28242" /note="C. briggsae predicted tRNA" tRNA complement(136311..136382) /gene="CBG28249" /locus_tag="CBG_28249" /standard_name="CBG28249" /product="RNA transcript CBG28249" /note="C. briggsae predicted tRNA" tRNA 136595..136666 /gene="CBG28516" /locus_tag="CBG_28516" /standard_name="CBG28516" /product="RNA transcript CBG28516" /note="C. briggsae predicted tRNA" CDS complement(join(136843..136906,136955..137094, 137432..137677,138179..138290,138686..138771, 138830..139364,139705..139761,139810..139814)) /gene="CBG22025" /locus_tag="CBG_22025" /standard_name="CBG22025" /product="Protein CBG22025" /note="contains similarity to Pfam domains PF00155 (Aminotransferase class I and II) , PF00266 (Aminotransferase class-V) , PF01053 (Cys/Met metabolism PLP-dependent enzyme) contains similarity to Interpro domains IPR000277 (Cys/Met metabolism, pyridoxal phosphate-dependent enzyme), IPR004839 (Aminotransferase, class I/classII), IPR000192 (Aminotransferase, class V/Cysteine desulfurase)" /note="Predicted" /db_xref="GOA:A8Y1D0" /db_xref="InterPro:IPR000277" /db_xref="InterPro:IPR015421" /db_xref="InterPro:IPR015422" /db_xref="InterPro:IPR015424" /db_xref="UniProtKB/TrEMBL:A8Y1D0" /protein_id="CAP38699.2" /translation="MSKNFDWPVGSNEAKDRLGERFSQLHLDTKISASHAKPLTNADP VVVPIYHSSTYRFKTIAQFDEPNHGSNFVYRRCGNPTTENVEVVINEIEGGAGSLLYN SGLAAISAVFLEFLGAGAHLISMSPIYSGTSSFINETLKRFGVEVTFVDVEKEANFAE AVEKAIKSNTKMIYFETIANPTMAVPDVLGTLEVAKKHKILTCIDATFSSPYLIQPLS LGADISLHSCSKFIGGHTDVIAGVVTVASYDNWKKLKLQQLTTGSSLSPYDAALLTRG LKTLALRVDRISENAQKTAEFLESHPKVSHVYYPGLESHPQHRYAKQVMNKFSGMIAF DVGSAENAIKLVESLKLIIHAVSLGGTESLIEHPLSMSHGKQLLRDSDGPTVAPGLLR FSVGIENVEDIIGDLKHALDQL" tRNA complement(139419..139490) /gene="CBG28450" /locus_tag="CBG_28450" /standard_name="CBG28450" /product="RNA transcript CBG28450" /note="C. briggsae predicted tRNA" tRNA 139590..139661 /gene="CBG28995" /locus_tag="CBG_28995" /standard_name="CBG28995" /product="RNA transcript CBG28995" /note="C. briggsae predicted tRNA" assembly_gap 140228..140756 /estimated_length=529 /gap_type="within scaffold" /linkage_evidence="unspecified" tRNA 140881..140951 /gene="CBG28895" /locus_tag="CBG_28895" /standard_name="CBG28895" /product="RNA transcript CBG28895" /note="C. briggsae predicted tRNA" CDS complement(join(150106..150267,153324..154173, 155048..155127,155324..155616,155889..156045, 159118..159241,159802..159977,160164..160614, 160830..161163,162405..162582)) /gene="Cbr-lin-41" /locus_tag="CBG_22026" /standard_name="CBG22026" /product="Protein CBR-LIN-41" /note="C. briggsae CBR-LIN-41 protein; contains similarity to Pfam domains PF00630 (Filamin/ABP280 repeat) , PF01436 (NHL repeat) contains similarity to Interpro domains IPR001298 (Filamin/ABP280 repeat), IPR003649 (B-box, C-terminal), IPR017868 (Filamin/ABP280 repeat-like), IPR000315 (Zinc finger, B-box), IPR001258 (NHL repeat)" /note="Predicted" /db_xref="GOA:A8Y1D1" /db_xref="InterPro:IPR000315" /db_xref="InterPro:IPR001258" /db_xref="InterPro:IPR001298" /db_xref="InterPro:IPR003649" /db_xref="InterPro:IPR011042" /db_xref="InterPro:IPR013017" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR014756" /db_xref="InterPro:IPR017868" /db_xref="UniProtKB/TrEMBL:A8Y1D1" /protein_id="CAP38700.2" /translation="MTTTTSTATLTLETTDGGEQHEKRQKSSGRLLNQSITDIIDLDA NDSGNELSMGGSSSEGDSSSHHRGEHSPNQHHHHHLYHQESLLGVPRGSSNSTSTVFQ PFGGGGSSLFDTPQSMLSSPAALAAAQAQTAMSPSGFGTIDMRSELFRCAVCQKCERM GGVLQFVCAHKTCQSCFQSPPFNAPFDLPRHHCSLCGAGTATAANFPPQMFLSPTLTT PPHAPGLLLDATSSSIGSATSSSSNQKTSTPRAFSFSLSGLPGTPSPIQMPRLSMDTW SPMGSSVAATTPSAGPSPLTIRNLPSLGAQQKSPMMQSAFDSLAVPRTSMCWTPRHPT MSSSSSMTPVPCNGQVFTMPSPSPLQNPPVNGPVPPIPCQGCEGNGAFAFCMQCQEAL CAHCVQAHQRVRATKQHAFIELNQLVATLMSRMQHQQQAAQMMHQQQQQNGPSSSSSS SLPPVQFLGSTGRPTLGSVGSGDGHGMDDSTTASGESSPRSSSVCGQHESPIVGFCEH CPQSSLCAICVAQHPGQHRVQPIGDVRMAVGELTNESQVLQWQCEKTGETIQRLIDGI VNNASTAENEIRTAFDTHVNALEERRKELLKRVEAVKSLKLSVLITQAEHLKSKQLDL QNAIQLAKHQMDTDSDDASSLRQIFDQLIACQMCSTEPNNNMLNVLMLACQLNEDDRL KFTAPQDGILLNKARQFGSIESGPCAKTSSIVGDNFKKAIRERQTVIYVQLRDACGDL LSSSIAATQPTAQALLPHQAPHAHLEQAMPTADVQAFVICPNGTPVDVSMTPRENGIV AVSYFPATEGSYTLNILVKGSPIQGCPTTMEVRRGRNYDEIAAKGPILTFGKEGSGDG ELCRPWGICVDQLGRVIVADRSNNRSLSGPFGAPAFSSTPTPLTPSPRQLLDRPTDLA VGPDGRIYVVDFGNNCIRVF" assembly_gap 150474..153255 /estimated_length=2782 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 172829..172982 /estimated_length=154 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(175700..175886,176088..176215) /gene="Cbr-spp-17" /locus_tag="CBG_22028" /standard_name="CBG22028" /product="Protein CBR-SPP-17" /note="C. briggsae CBR-SPP-17 protein; contains similarity to Interpro domain IPR008139 (Saposin B)" /note="Predicted" /db_xref="InterPro:IPR008139" /db_xref="InterPro:IPR011001" /db_xref="UniProtKB/TrEMBL:A8Y1D2" /protein_id="CAP38701.1" /translation="MHRPSLLVLLSVLIATQAFVVPPSQATLACITCVATVKGVEAKM LAEGGHVAKNDVDAICLKEVPTHSAEHLCEDYGEHEVDVMVALIKKDVPPKMICQELN KC" CDS 177788..178105 /gene="CBG22029" /locus_tag="CBG_22029" /standard_name="CBG22029" /product="Protein CBG22029" /note="contains similarity to Interpro domain IPR008139 (Saposin B)" /note="Predicted" /db_xref="InterPro:IPR008139" /db_xref="InterPro:IPR011001" /db_xref="UniProtKB/TrEMBL:A8Y1D3" /protein_id="CAP38702.1" /translation="MHRPSLLILLVSVLISTRAFVMPPSQATLACMTCVATVKAMEPI ILNEGDDVAKKQLNQLCYKEAPTPAAEASCEEYGDDAVDVIIYLVKIGVPPKTICQQL KKC" CDS 180739..181053 /gene="Cbr-spp-23" /locus_tag="CBG_22030" /standard_name="CBG22030" /product="Protein CBR-SPP-23" /note="C. briggsae CBR-SPP-23 protein; contains similarity to Interpro domain IPR008139 (Saposin B)" /note="Predicted" /db_xref="InterPro:IPR008138" /db_xref="InterPro:IPR008139" /db_xref="InterPro:IPR011001" /db_xref="UniProtKB/TrEMBL:A8Y1D4" /protein_id="CAP38703.1" /translation="MHRPSLLVLLSVLIATHAFVAPPSQATLACLTCIATVKGLEPRV LNEGDDVAKHEVKALCLKEAPTPAAEASCEEYGDDEVEVIIDLIKKDVPPKTICQQLK KC" CDS complement(join(184093..184212,185024..185202, 185464..185597,187217..187664,188519..188629, 188686..188804,188858..188985)) /gene="Cbr-mrpl-38" /locus_tag="CBG_22031" /standard_name="CBG22031" /product="Protein CBR-MRPL-38" /note="C. briggsae CBR-MRPL-38 protein; contains similarity to Pfam domain PF01161 Phosphatidylethanolamine-binding protein contains similarity to Interpro domain IPR008914 (Phosphatidylethanolamine-binding protein PEBP)" /note="Predicted" /db_xref="GOA:A8Y1D5" /db_xref="InterPro:IPR008914" /db_xref="InterPro:IPR035810" /db_xref="InterPro:IPR036610" /db_xref="UniProtKB/TrEMBL:A8Y1D5" /protein_id="CAP38704.1" /translation="MSAAQYARLVPKKYRSRTLPKIDRPWRPRVIAWAGPAAFYPNRF YEIDKWYKARIDKPEKLPEMHVIDPANHMRSLSELMKKPEIDQIDIGFKKREEVVKAE KSAEDRVELERKSRHMQLKIDISSLASENLQVYRHFRVFDDLFGENVFFENVQKLDVA FQDHHLVHSGNILTAETTVIAPEVSIESVGKGKGFNTILMVNLDGNATEKRGELIHWL ISNIPDGEGIQKGEEVMKYLQPLPFYGTGYHRVAFVLFRHQEKVDFKIGGGSSLEERV HSISDLYKSHESQLTPSAIRFFQTSYDKSVKTTLHSLGLKSPLYEYEYRQALKPAQRE FPEKPQPFDLYLDMYRDPKEVEKEILEKRLAEVKLDHVEEPEWIDPNWVENKKTLPAW QHDRILERRGVGNAKYHNDL" CDS complement(join(189795..190028,190155..190277, 190760..191518,192202..192486,192619..192778, 192827..192837)) /gene="Cbr-spd-1" /locus_tag="CBG_22032" /standard_name="CBG22032" /product="Protein CBR-SPD-1" /note="C. briggsae CBR-SPD-1 protein; contains similarity to Interpro domain IPR007145 (Microtubule-associated protein, MAP65/ASE1-type)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1D6" /db_xref="InterPro:IPR007145" /db_xref="UniProtKB/TrEMBL:A8Y1D6" /protein_id="CAP38705.2" /translation="MSRRHSVVDAYAVVDAKIRDTMNQLSNLWDEVDMKDSMRCNRVE KAFAHITQLCDDMVTGERDMVTSLRLSIREDLSNVEKMRRELEMNGFQRPADIKDGSI ALRRRLQAEVKDLEEEFNRRHEEQKALIEKLERLKTRLASEFQFEHDLHSLFPVSAFQ QYTSTANEMEEDLSQRWKQVDLLQTEIRQWREMASHVAQQIDGDDELRSLLETNIDSD VFVFSRQIVDDLKAYHQELKPLYDQWLEEIEFRWTEQYELLADLWEKCMIPHDQRHYS AVFEPAKNSEDVLSRMQAERERLEAKYASCKGIYDLVEKWKTAWNERLEIEERRRQPD YYKKTNVLPDNKRDRELGVRMNALDKEIASAYRRHLKENPDDVIRIHGKEPSMYIASV EEEHQQEIKFLLQLKKEEKTRLQSPTPSRTPRTAQKRTIFKTPASSTKTEPVAKRLHF EGELPPCMSPATSEMISFITPTRRQLAGPKTSSPKETITPSRTTTPLSKRAATPSSMA SGASSSHKPLTRRNF" CDS join(193244..193286,193330..193430,193473..193664, 194383..194512,194728..194957,196069..196282, 196430..196549,196605..196681,197411..197981, 199158..199687,199855..200199) /gene="CBG22034" /locus_tag="CBG_22034" /standard_name="CBG22034" /product="Protein CBG22034" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1D8" /protein_id="CAP38707.2" /translation="MTGRKSYEPKQCIPVINDVRDEKFAGETEDGALEEFSALPKIWK NPERLSIPSDYSLLLSSLSREIHMESNFSETLLVLKTMKNRKNSPEKTIDKMFEFLLT QILREETRRKCFPCGCVQKMYIELYTENSNTRLIGALNSLITGKLADLDPVVKRLFLE MQQIRPIEYYEYYIELLGELQMCSVIDKTDEKQLPRVIQLIGLLSELKLEDVPKACGK LYYLMGTMKGDGKKKSSVMDNAVKSKLLPKIFDSIILSAGGSKILNLSRNSVHKMVEL VINEKYSYAEQATISFAPLQFLNRIFQEFEIWEKSWAALKNRLDSFKMSNPQAPIVFL YFLSLIYRNDQSLIGCLVEFLELQYHQNSENSEIKKTILILLEIMESLGDSAPSINQY FKENHPKNRLLLDESEELEIVLDHFQNFSNAEINQFLAKKSFCNSEFSILIDKLKDDL NFSITSDTFWRILLEKIDENSMIFIENQLKMLINRQDRKSIQTKIEQIFRKILKNFEE KSTKKLELVLLKFPKILFDFNDEQWRLMPPTTTISLVSTLIFGFSAIFEGNESQITCL LQQLLSKITASPPISNSNPLKILEEIIEKIRENRFPGSLEIGFLKEIYDENPENLQKK ERILQISAILFEKLAAELQRSGDTNGKAPFCQISTIIDDYLKKVGRRENEIIQNFEIL QTISLKTMRGYVLMWTEKWNWLFVSRKIWTILSTAKTMDSEFLKELMEVLNQNQSRNL RPYESGRHPKAGDTKAGDEIAYRTTVNSQTESNQTAENDVQEHKKGLKIFKNIFSFVS GILFTNLLKNSLIFYNGTVDYGKQLRTFSPFVSSFRVSRFWVYLVIRTVSET" CDS join(202385..202642,203449..204015,204467..204670, 205015..205227) /gene="CBG22035" /locus_tag="CBG_22035" /standard_name="CBG22035" /product="Protein CBG22035" /note="contains similarity to Pfam domain PF04046 PSP contains similarity to Interpro domain IPR006568 (PSP, proline-rich)" /note="Predicted" /db_xref="InterPro:IPR006568" /db_xref="UniProtKB/TrEMBL:A8Y1D9" /protein_id="CAP38708.1" /translation="MLEDGEISNSPKSAAPAADDDDDDGFVVDRSFLEVIENSEDVAD DDAAANVTGDSEAVKDISMASSLSGTPSEWAKKMRKRLLEESEPQSPSTEPVSKRPRR QNLCFNCREEHSIADCPHPKNFAEIRKNKQEFQALQQGNTGGARISKETAGGAAKESK FKAGKISIALRDALGLGSDDLPEWIYRMRRMGFRKGYPPGYLRESLKHEYGTLKIFSG DSKEEEMEQQSCPMPIVQESKIVTYLGFNKSYGALNDREKGMFSIPPMKEFVEMLQED AKSRHEWEESRRRCDLERLKRQEAAEKDSEDVADDSVIVVEEVKEESVVILETSEDVV VAGEGTEKLGESIHQLIGTPIISRRDASGVWIPHTTPTLEAFAVGIVPFEAKEEEKPR GIFKKIMATLRGEESKSDEDK" CDS join(205946..206029,206180..206281,206332..206463) /gene="Cbr-glrx-10" /locus_tag="CBG_22036" /standard_name="CBG22036" /product="Protein CBR-GLRX-10" /note="C. briggsae CBR-GLRX-10 protein; contains similarity to Pfam domains PF00462 (Glutaredoxin) , PF05768 (Glutaredoxin-like domain (DUF836)) contains similarity to Interpro domains IPR002109 (Glutaredoxin), IPR014025 (Glutaredoxin subgroup), IPR008554 (Glutaredoxin-like), IPR011767 (Glutaredoxin active site), IPR011899 (Glutaredoxin, eukaryotic/virial)" /note="Predicted" /db_xref="GOA:A8Y1E0" /db_xref="InterPro:IPR002109" /db_xref="InterPro:IPR011767" /db_xref="InterPro:IPR011899" /db_xref="InterPro:IPR014025" /db_xref="InterPro:IPR036249" /db_xref="UniProtKB/TrEMBL:A8Y1E0" /protein_id="CAP38709.1" /translation="MSKAFVDGLLQSHKVVVFSKSYCPYCHKARAALDSVNVKPDALQ WIEIDDRKDCDEIQNYLGSLTGARSVPRVFINGKFFGGGDDTAAAAKNGKLAKLLQEA GAI" CDS join(207610..207726,208220..208509,209558..209726, 210747..210835,210889..210946,210992..211135, 211533..212022,213863..213996) /gene="CBG22037" /locus_tag="CBG_22037" /standard_name="CBG22037" /product="Protein CBG22037" /note="contains similarity to Pfam domains PF00560 (Leucine Rich Repeat) (2), PF07679 (Immunoglobulin I-set domain) contains similarity to Interpro domains IPR001611 (Leucine-rich repeat), IPR013098 (Immunoglobulin I-set), IPR003599 (Immunoglobulin subtype)" /note="Predicted" /db_xref="GOA:A8Y1E1" /db_xref="InterPro:IPR001611" /db_xref="InterPro:IPR003591" /db_xref="InterPro:IPR003599" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR013098" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR032675" /db_xref="InterPro:IPR036179" /db_xref="UniProtKB/TrEMBL:A8Y1E1" /protein_id="CAP38710.2" /translation="MREDVLLRFLAIFLFFHPIFCSTALKTCKSFWVSNRPSQDCSSL SLQEPPPLLPNVLSLSVSNNSIFRISNFPPDYRRLQSLRLDQCQLEKLEFEALSVFEQ LKELDVSRNSLTKLIIPRNLVSLRVLNLAFNSFSYVPDMSHLESLRLVDLSHNRLISV RPRMLPFNLEVVRLSANRFTHLSPWPFLHKLQELDVTFNDLECDCSLWHFVTWAEKLA LFDSTMLPCRRPSELRKSPIDGTTVCGPTVVSSSAESVVVSLEDSHTMCCTALATPPP QLFWQLNGKNISNGLSQKHLSDSGKVEFCLEIRKIQLKDMGKYRCVASLAGLNSSKEF HVERDKIPIVLNSAEGMVIYCQITICAFLGVCCFISCCVLRSGGRGKTRPNREFLHTK VMEIPRDSCEYCCDIGNVEVGDGDEDDDVASRECDDWGDAETAAVRQYLQWRAMHQDQ HKYSMIPQIRHESLCRLSNEASLSNRAPLAKFDEHQHSVSFDMTHL" assembly_gap 209023..209332 /estimated_length=310 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(214238..214486,215196..215267, 215319..215396,215604..215819,217806..218002, 219703..219744,219798..219858,220032..220125, 220426..220484)) /gene="CBG22040" /locus_tag="CBG_22040" /standard_name="CBG22040" /product="Protein CBG22040" /note="contains similarity to Pfam domain PF01467 Cytidylyltransferase contains similarity to Interpro domains IPR004821 (Cytidyltransferase-related), IPR004820 (Cytidylyltransferase)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1E2" /db_xref="InterPro:IPR004821" /db_xref="InterPro:IPR014729" /db_xref="InterPro:IPR041723" /db_xref="UniProtKB/TrEMBL:A8Y1E2" /protein_id="CAP38711.2" /translation="MSGTAPDGLPKGNRVWADGCYDMVHFGHANQLRQAKQFGQKLVV GVHNDEEIRLHKGPPVFNEEERYRMVADTLDKYQCDFCIHGDDITLTADGKDTYQEVK DNGRYRECKRTCGVSTTDLVGRMLLLTKNHHTQDEHIEQHVERARSLSTDNVAMSPWT RVSRFIPTTTTILEFAEGRPPKPTDKVVYVTGSFDLFHIGHLAFLEKAKEFGDYLIVG ILSDQTVNQYKGSNHPIMSIHERVLSVLAYKPVNEVVFGAPYEITSDILDQFNVKAVI NGFRDRDSSVVNCPLSSIDPFAEAKKRGIYHEVDSGSDMTTDLIIDRIINHRLEYETR NRKKEKKEADVAKALNLIKVE" assembly_gap 216799..217129 /estimated_length=331 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(222140..222253,223014..223262, 223349..223896,224634..224751)) /gene="CBG22041" /locus_tag="CBG_22041" /standard_name="CBG22041" /product="Protein CBG22041" /note="contains similarity to Pfam domains PF00575 (S1 RNA binding domain) , PF07541 (Eukaryotic translation initiation factor 2 alpha subunit) contains similarity to Interpro domains IPR003029 (Ribosomal protein S1, RNA-binding domain), IPR011488 (Translation initiation factor 2, alpha subunit), IPR022967 (RNA-binding domain, S1)" /note="Predicted" /db_xref="GOA:A8Y1E3" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR011488" /db_xref="InterPro:IPR012340" /db_xref="InterPro:IPR022967" /db_xref="InterPro:IPR024054" /db_xref="InterPro:IPR024055" /db_xref="UniProtKB/TrEMBL:A8Y1E3" /protein_id="CAP38712.1" /translation="MKCRYYENQFPDVEEAVIANVKMIADMGAYVRLSEYNDKEGMIL LSELSRRRIRSVNKLIRVGRSECVVVIRVDKDKGYIDLSKRRVYAKDTNQCNERYANA KMVNSILRHVAEQLGYTTDEQLEDLYQKTAWHFDRKEKRKAASYDAFKKAISDPTVLD ECDITPEAKEKLLEDIRKKLTPQSVKIRADIEVSCFDYEGIDAVKAALITGKNCSTET FPIKINLIAAPHFVVTTQTFDREGGLVAVNQVLETIKTAIEGFKGKFAIKEEARIVTD IEDEKKKGEGEDEEEDSEEDEDEEEDEDDDGLMAPKGLDQQVDAEEASRDNRKKAGDD EDSDEEDD" CDS complement(join(225059..225367,225414..225835, 225888..225984)) /gene="Cbr-phb-1" /locus_tag="CBG_22042" /standard_name="CBG22042" /product="Protein CBR-PHB-1" /note="C. briggsae CBR-PHB-1 protein; contains similarity to Pfam domain PF01145 SPFH domain / Band 7 family contains similarity to Interpro domains IPR000163 (Prohibitin), IPR001107 (Band 7 protein)" /note="Predicted" /db_xref="GOA:A8Y1E4" /db_xref="InterPro:IPR000163" /db_xref="InterPro:IPR001107" /db_xref="InterPro:IPR036013" /db_xref="UniProtKB/TrEMBL:A8Y1E4" /protein_id="CAP38713.1" /translation="MAAAAQKLLGRLGALGVGLSVAGGIAQTALFNVDGGQRAVIFDR FSGVKNEVVDEGTHFLIPWVQKPIIFDIRSTPRVVSTITGSKDLQNVNITLRILHRPS PDKLPNIYLTIGMDYAERVLPSITNEVLKAVVAQFDAHEMITQREVVSQRTSVALRER AAQFGLLLDDISITHLNFGREFTEAVEMKQVAQQEAEKARYLVEKAEQMKIAAITTAE GDAQAAKLLAKAFANVGDGLIELRKIEAAEEIAERMAKNKNVTYLPGNQQTLLNLQS" CDS join(226708..226872,227111..227266,227476..227592) /gene="CBG22043" /locus_tag="CBG_22043" /standard_name="CBG22043" /product="Protein CBG22043" /note="contains similarity to Pfam domain PF00828 Ribosomal protein L18e/L15 contains similarity to Interpro domains IPR021131 (Ribosomal protein L18e/L15P), IPR001196 (Ribosomal protein L15, conserved site)" /note="Predicted" /db_xref="GOA:A8Y1E5" /db_xref="InterPro:IPR001196" /db_xref="InterPro:IPR021131" /db_xref="InterPro:IPR030878" /db_xref="InterPro:IPR036227" /db_xref="UniProtKB/TrEMBL:A8Y1E5" /protein_id="CAP38714.1" /translation="MAHAQRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRIN RDKYHPGYFGKVGMRVFHLNKNHHYCPTVNVERLWSLVPQEVRDKVTGQKAPVIDCTK LGYFKVLGKGLLPTTPLIVKARYFSHEAEQKIKKAGGACVLVA" CDS join(227815..227985,228037..228201) /gene="Cbr-rla-1" /locus_tag="CBG_22044" /standard_name="CBG22044" /product="Protein CBR-RLA-1" /note="C. briggsae CBR-RLA-1 protein; contains similarity to Pfam domain PF00428 60s Acidic ribosomal protein contains similarity to Interpro domains IPR001813 (Ribosomal protein 60S), IPR001859 (Ribosomal protein P2)" /note="Predicted" /db_xref="GOA:A8Y1E6" /db_xref="InterPro:IPR001859" /db_xref="InterPro:IPR027534" /db_xref="InterPro:IPR038716" /db_xref="UniProtKB/TrEMBL:A8Y1E6" /protein_id="CAP38715.1" /translation="MASNQELACVYAALILQDDEVAITAEKISSLLKAANVEFEPFWP GLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESD DDMGFGLFD" CDS complement(join(228309..228486,228542..228873, 229081..229176,229236..229301,229358..229465, 229756..229818,229886..230022,230100..230170, 230214..230278)) /gene="Cbr-arl-13" /locus_tag="CBG_22045" /standard_name="CBG22045" /product="Protein CBR-ARL-13" /note="C. briggsae CBR-ARL-13 protein; contains similarity to Pfam domains PF00025 (ADP-ribosylation factor family) , PF00503 (G-protein alpha subunit) contains similarity to Interpro domains IPR006687 (Small GTPase superfamily, SAR1-type), IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR024156 (Small GTPase superfamily, ARF type)" /note="Predicted" /db_xref="GOA:A8Y1E7" /db_xref="InterPro:IPR006689" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8Y1E7" /protein_id="CAP38716.2" /translation="MTDKSWFETIFCCCNRRPVIRREIKLGCFGIGGAGKTFFLKVLK GEDPRDLLRTNGFSTIKMEYDESFQLTVYDVGGDKGIRGIWSNYYAEVHGIIYVIDYS TDETFLESLEAFDALKNHPHVLKKPIFLLLNNQNNREFDDVEISNETNIQPGQHKCVL FSHFNKYTGYLNNIKNATMTVEARTKKDKHEFQEQFGRFIDSISEHYVELSEGVKAAE LALKIRQDAAKEQRRLMQMKVEHDALKADVAGLELRNPPPQPAAQPVHPDPPSDPKSA SINLDESPPLSLASSTIPSDIIQSSPEEVTPRDPVPKISQTSTLPVSPQDSHAHIKME TPILRDNYFLPPKTPGRQYSRIQRIQNVLNGSRVVPK" assembly_gap 233451..233460 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 235819..236099 /estimated_length=281 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(236622..236768,237914..238008, 238236..238242)) /gene="Cbr-moag-4" /locus_tag="CBG_22046" /standard_name="CBG22046" /product="Protein CBR-MOAG-4" /note="C. briggsae CBR-MOAG-4 protein ;" /note="Predicted" /db_xref="GOA:A8Y1E8" /db_xref="InterPro:IPR007513" /db_xref="InterPro:IPR040211" /db_xref="UniProtKB/TrEMBL:A8Y1E8" /protein_id="CAP38717.1" /translation="MTRGNQRDLAREKNQKKMAEQKKRQGAAGQEGNAGLSMDNRMNR DADIMRIKQEKAAAKKAEEAAAASANAKKVAKVDPLKM" CDS complement(join(239608..239717,239828..239921)) /gene="Cbr-rpb-10" /locus_tag="CBG_22047" /standard_name="CBG22047" /product="Protein CBR-RPB-10" /note="C. briggsae CBR-RPB-10 protein; contains similarity to Interpro domains IPR000268 (RNA polymerase, subunit N/RPB10), IPR020789 (RNA polymerases, subunit N, zinc binding site)" /note="Predicted" /db_xref="GOA:A8Y1E9" /db_xref="InterPro:IPR000268" /db_xref="InterPro:IPR020789" /db_xref="InterPro:IPR023580" /db_xref="UniProtKB/Swiss-Prot:A8Y1E9" /protein_id="CAP38718.1" /translation="MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYC CRRMLLAHVDLIEKLLNYHPLEK" CDS join(240430..240549,240612..240759,240808..240893, 241110..241213,241330..241525,242921..243213, 244250..244376,245017..245163) /gene="CBG22048" /locus_tag="CBG_22048" /standard_name="CBG22048" /product="Protein CBG22048" /note="Predicted" /db_xref="InterPro:IPR011990" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR019734" /db_xref="InterPro:IPR032076" /db_xref="InterPro:IPR038645" /db_xref="UniProtKB/TrEMBL:A8Y1F0" /protein_id="CAP38719.1" /translation="MENCKKELELYMRFYFKSNPTSTKAEETQAVIAKAEEYIQNTLP TIFSKNHVYTTNQKALLLSEAGKLYNVIWDYNESAEKFLTKAVRLNPKNADTWHELGL CVMKRQDLEFAQSCFNISLGIVRTAPVLTSLAIALRLVALNHPEPAQTEMRTKAMELI IEARRLDPTHGPANAAFATGLFYCFFSTAKTELQYLEKVVENYRKALRECELSRTDVQ VYINMSTCLKFMEKYDETLESLQKSVEFDARNELETREKRDSFVKYLRNFAESVQKKG RIKAKRLAEMVGDLKKTASGNDGFRVKIIGNVGHEEAIPVALVGVDVNGEVYGITVYN CLSNFGFVIGDTVTIAKPDIRELKNFQIPSQPPIHVECLKWVRVATPTQIKKNGVALT DSVVARAFTTTQTK" CDS join(250129..250193,250325..250450,252287..254374, 254569..254726,255355..255617,256185..256280, 256412..256669,256814..256903,257620..258429) /gene="CBG22049" /locus_tag="CBG_22049" /standard_name="CBG22049" /product="Protein CBG22049" /note="contains similarity to Interpro domain IPR020478 (AT hook-like)" /note="Predicted" /db_xref="GOA:A8Y1F1" /db_xref="InterPro:IPR017956" /db_xref="UniProtKB/TrEMBL:A8Y1F1" /protein_id="CAP38720.2" /translation="MEQPHPKPIYTDTENRRLKELRIDAKYKNRCTFQECVWMKASHD ECKFVGMPADAPSHIAKGHLKIHRHECKICHMKFFDELEVYLHFSTQCPASKWDDMNS RLFSRDEAITHRRVVNTSFEPSKREKYYEYQKLQNQVKSVSNQEPALPSTPGYDDVVE QTLAAAQMAAASGSGHREKSTNGNRCTRPRKSSREPQVLETSVRSLPIAMRSREASIE HNYPEGYDPNARPIQFGYIPRDQAGPSSQNQQRQPLQDPRLAAQSQRSDPRWASPMET LYPEEPDTIMVDPTPEPEADPSLIDEPIPLVFNRPPPPIPSNFNFNQPPPPIAQPPPV APQVRVDLPRASRSDWTEMKRSTIAPAAPPAAEPPRPVPAPANPPGRSAPLLQAAQPP SVAPQVHVDPPRASRSDWTETKPSTIAAAAPPAAQPSRSVPGPIGPFGRSAPPPPAAP PIPPQIRVDPPRETKPSTIAQPSQSAAPPAPIPPPAAQQSRSVPVPPAAASSSPAPTR IDLSERTLARLAQIAPSSQAAQPESAPCQPRRQITRSDFEGPATRTRGRSRGGSMDTS PVFRQAPRRSNFRARSTDGDDARTPAPRAKSRDPEATPRRSAAFNQADNDVLGAATPL TAREQSTDGSGQPVVKRGRGRPRRDQSVNRPDEGPRGQTPEPGRPEKPVGRPRGGSSR DQSREPEGPSGPTNGRPRVPSREPSVDAQPPRRGPGRPRTISREPSEDRDTSRERSSR APSVEASEQVIVAERVGRTGTTTNAIKTPGEFRAGPKRGVSYTRSRSRDSGDEGGMRL RELASTLSSDKADSAAHHRRQEPRFQAKSTVKVACGQSRMAALLDDVPSMPSSVRKPT SSTRLEATREGRRQAAYNRLRVAENGNGGVETSRANGSTQQEKRSRIRTPEPSVLHAE IPTPPGIGWIGGEPQEKRPRHHSPEPPVPGTSVQAPPSFPPGISLPSASRRATPSGDD GKFFSLSKFCWKFGEFQKIVPLGMVHRRRRRPPHIIDDEDRRRQKLESLHHTSSRHRR RQAMSIKPLLLHRRQTHQLEMAEIVFPAATSSSFSGLYVDLAKMALVSTGRQDIPNPL ASPEDVAPVPAHLAEARRADLEEYGRRLNERGLQNLPSTSTAPLPSAGGFLNLPTSPA PQPGVLQNLSRASEAVQSRRQILGLQDINHYQPPPERHPAQSFREAALQRVQQQAEQA HQTSRRRQSTEREVRRQSPEVRGGEGPSSDRPHRKRQESRRWQERDQGAWQGGHYRRS RSRDDDNGGGWNHVHGRGGARGQGNYLGRNFDPHYHERQRDHRDHNGGGGAYRRY" CDS complement(join(260130..260267,261046..261520, 261943..262275,262919..263130,263406..263549, 263598..263672,265126..265131)) /gene="Cbr-crtc-1" /locus_tag="CBG_22050" /standard_name="CBG22050" /product="Protein CBR-CRTC-1" /note="C. briggsae CBR-CRTC-1 protein; contains similarity to Interpro domain IPR024786 (Transducer of regulated CREB activity)" /note="Predicted" /db_xref="GOA:A8Y1F2" /db_xref="InterPro:IPR024786" /db_xref="UniProtKB/TrEMBL:A8Y1F2" /protein_id="CAP38721.2" /translation="MWVKSITHHPTDSSSPTGTAPIAIPQQAGVGLLPPQHPWGHNLG GSLPNVHQLSNYSPPQWAQPHWQQEAIGRPMQGHRSRSPEDHMIGSASGSPSHHHYHP YGARSNGHSRSPDRTPPHHPHYAPYGGPTYNQPGQLVPPESWNQINRARSDPAIHNMG GMHPMHQMMHHPAHQIPIHQMPQYSMPGPSGMIQNPQQPQSNQHSPQMTPQGSQQGSP VQMHHQIPPPLQMGGANQIQGNGMSPLQSPNHMMTPMYGYHNGSPLHSPMDSPHASTL MLDGSGTPHMELSPPGMMHDFDAGSLPNLQMQQQQQQEYTNGINNTTPSGSSSGYYHA PIGARHSTGACGPRLVPGPALTPESQSAPTSPHNQLDPNQPLMWPTRTFSNSPEALDI PKLTITNAEGAPGHHVDSYNDFNYSSYPSFFQDLGLESLDNVLCNGSGAPPIQPNNSF HDPGGTMLQN" CDS complement(join(286783..286963,287010..287231, 288291..288496,288537..288665,288710..288838, 288892..289011,290489..290710)) /gene="CBG22052" /locus_tag="CBG_22052" /standard_name="CBG22052" /product="Protein CBG22052" /note="Predicted" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:A8Y1F3" /protein_id="CAP38722.2" /translation="MEDVTLHHFRWRKPVENKNGEIVYKTSETQTAEISRKDVECVAN FQKSQESQTDDFMQNGVGDGIKKEIRISKEVLGHIYDFLRDDSKVNYDRLLEFHKFDK VSLETVQKYHVETRNENIILMISNSSRKTLILFGGLSHETFCSHQARAVLCSSSTTSS LPLPVCAISAVFYSSTQFLLGDISGNISMWTKEKMIFENKVTDGSVTSLELCRYGLLS GSDDGNVILWKVEESKIEKIEGIKLTVSDLSRKIRRSSTSNKPVAIVSMQVSGDEVCV ATETGGLYLLTLPTLESKPLTQSATSIFKILYEHPYIAVVYHTSNSAIFNSEGLVDEI PFVATLAVRCGAYFIFSNQSRLIIWSMNTRSTVIDENLNCHSICSLSNDTLQVLDGDF NLVSNFLNDH" assembly_gap 289509..290178 /estimated_length=670 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(294986..295084,295132..295254,295566..295712, 296841..297320,298638..298808,298986..299135, 299184..299338,302253..302499,303817..303987, 304165..304314,304363..304517,305502..305652) /gene="CBG22054" /locus_tag="CBG_22054" /standard_name="CBG22054" /product="Protein CBG22054" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1F4" /protein_id="CAP38723.2" /translation="MSISSTPSSPSISGSSISSNATNISFCYTWTTKLKTRKTADGEA TILSISPKFATVHQLISFQWNIRIHATSEVNDDDEEVDYVAVDLYFVDGPVNEVNVMA EVGAFEKTSTATLGSIPAGVKETKTTKMTKGVGCEITDADRECVSRYLKENVDNVIKI SIIINMETRLFEPSTYLDAISPTPRASFLTANYNARVNSKVWKRRSKKRNGRVERRVL SDNEKTSYERKVQMILDEEREKLMERRELLKVEKEEDNGSRRASLISQFRENQHESAL DDHMFKRILVSCCESCEQRRLSFMYDSRTEDDSEADEEDDGDDEEEEEEPHFECDKSD KEHVHDMLANLYFNKVVLPEMEYVEDFVDFLIDAELNDLPVLKRACERYLCSELNTKK DIGTCLLLDLLFNSIVFSLPVMKSMTLTELANRTHEFVEPDSLLEQEEYNMETEIEEE EWTVERRVLSDNEKTSYERKVQMILDEEREKLMERRELLKVEKEEDNGSRRASLISQF RENQHESALDDHMFKRILVSCCESCEQRRLSFMYDSRTEDDSEADEEDDGDDEEEEEE PHFECDKSDKEHVHDMLANLYFNKVVLPEMEYVEDFVDFLIDAELNDLPVLKRACERY LCSELNTKKDIGTCLLLDLLFNSIVFSLPVMKSMTLTELANRTHEFVEPDSLLEQEEY KNLDKRMRNLADRNLVEIIEQCVTFRDQKARVRVLPVAESFESNSFDLTN" assembly_gap 299967..301724 /estimated_length=1758 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 310175..310184 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(332406..332497,333189..333311,333495..333585, 335085..335300,338378..338487,338624..338901, 338972..339138,342481..342792,342947..343085, 343721..344723,345049..345416,346153..346445, 347392..347592,349530..349784) /gene="Cbr-tol-1" /locus_tag="CBG_22058" /standard_name="CBG22058" /product="Protein CBR-TOL-1" /note="C. briggsae CBR-TOL-1 protein; contains similarity to Pfam domains PF00560 (Leucine Rich Repeat) (5), PF12799 (Leucine Rich repeats (2 copies)) (2), PF01582 (TIR domain) contains similarity to Interpro domains IPR001611 (Leucine-rich repeat), IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain)" /note="Predicted" /db_xref="GOA:A8Y1F5" /db_xref="InterPro:IPR000157" /db_xref="InterPro:IPR001611" /db_xref="InterPro:IPR003591" /db_xref="InterPro:IPR032675" /db_xref="InterPro:IPR035897" /db_xref="UniProtKB/TrEMBL:A8Y1F5" /protein_id="CAP38724.1" /translation="MRRKPIFLLLLFLLVLSINATDQPPDECPKFCKCAPDPVQPTAK LLLCDYSTNGTVVPLADANYNNQISNIRSLFITCDQRQFRFPDAYFKSLTALHHLRIV GCHMTHFSVKLFEDLSSLRTLELDQMSPPSTGAFEMTEDALMPLARLEKFSLTRSFNV ELPQRLLCSLPHLQVLNLSTNGLPTLRREETCVAQQLLIVDVSRNQLTSIEQFLRGVP AIRQISLAHNSIAQLDASTATPFLQQLDAENNRIQESISLPDTVVHVNLAGNLLRKIP DAVSTLPSLVALNVSRNEIESGNSSVLASSELEMLDASYNNLDQLPTEWLQNCDKRIA HLHLEHNRIQEIPGGVLSNATNLQTLDISSNRLRVFADSILPENSKIGNLRLSNNSLE VLEPKSLEGLKLEHLDLSHNKLSEIPSAIAKVEQLKKLDLSNNQISKLYQYVLNKIKQ LHTVDLSNNQLQSIGPYIFSDSSELHSLDVSNNEISLLFKDAFARCPKLRKITMRNNR IKSLDEGLSEASGLRRLDVSNNLIVVLKWSALPENLEILLADNNDINLLTASTSSKLS LKTVSLATNRITVMNAEQIPNSLESFDVSFNRIARLGKGAFGEKSQLRKLNLKGNQLT VVPTESIRILEGVHPVKLEISQNPLICDCQMTWLLSSGKTSRIQILDDAQCHHAIDQH PIPLKSLQKKDLLCPYQSICEPECICCQYGNCDCKSVCPASCRCFRDEQFNINIVRCA GSNTTVPKREFVVSELPVSATEIILSGVTLPQLRTHSFIGRLRLQRLHINGTGLRNIQ TKAFHTLPSLKTLDLSDNALLSLTGDEFLKCPELQQLFLNGNRFSSLTRGIFEKLPNL KHLTLHNNSFEDVPRVISSLSKISLSGNPLRCDCSAKDEQYRHSAGSAHQQPFWEHNA AEWFAQHRELVVDFQAVECWENVTKAFLTNDTTVLSAYPPNVGPDVFVMRMEEFLRDY NTTICVPFSSGFFGQDPQNSIIFVIVSVSIAVLLCILVVLAVSFVRKSHDAINQRRYK ASSLNCSTSAGSSPLPIPLLSYHAFVSYSKKDEKMVVDQLCRPLEDEDYQLCLLHRDG PTYNSNLHAISDELIAQMDSSQCLILVLTKHFLENEWKTLQIKTSHQLFAKNRSKRVI AVLGDGVDANLLDDELGQILRKHTRIEMRSHLFWTLLHSSLPSRLPLPPNDDSSQLYS DIYGIVPSDVV" assembly_gap 347763..348800 /estimated_length=1038 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(352344..352493,354262..354420,355968..356329, 357014..357143,357643..357938,358588..358711) /gene="Cbr-dyf-11" /locus_tag="CBG_22059" /standard_name="CBG22059" /product="Protein CBR-DYF-11" /note="C. briggsae CBR-DYF-11 protein; contains similarity to Pfam domain PF10243 Microtubule-binding protein MIP-T3 contains similarity to Interpro domain IPR018799 (Microtubule/TRAF3/DISC1 binding protein)" /note="Predicted" /db_xref="GOA:A8Y1F6" /db_xref="InterPro:IPR018799" /db_xref="InterPro:IPR040468" /db_xref="InterPro:IPR041476" /db_xref="UniProtKB/TrEMBL:A8Y1F6" /protein_id="CAP38725.2" /translation="MASTTMEKTKKVLEKIIEKPKITIALLERPPFKFIVDIVSNVIE ATGYLKNDFSKEEIQSAGKDKDSKSAFLEKLIKILDDGSLKNVKASKIMSGMEPVETN KENKENEKDEKKKKSSSKDRHKSSEKKEKKEKKSDDSKPKKSKLEKSEKEKTEKSEKV LVRQDSMITSNGDVNNHEELPDDGYDDKEDTLSIPVNEKSDEPVVAVEEETPPVLVKY TDMAIRPTTGAAGGRPMTSMGRPGTAASRPAPPKLKKKQIATMDATPQQQIELKSEII TDSGPILENAEDAFIMENEEDDLEKTPRIAADVINKEDRGALVQKIMETKAGIEDSRN TVDQMDEDSDKGITVEREKVRQLQEKLQDLTRLYNIISNLQREIVEMKEELSKARGRV LNNGKKIGIFISNV" CDS complement(join(359377..359566,359691..359779, 359825..360007)) /gene="CBG22060" /locus_tag="CBG_22060" /standard_name="CBG22060" /product="Protein CBG22060" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1F7" /protein_id="CAP38726.1" /translation="MGKFRNQKKNLVRNKVAIAVGKAKQMKAAARRAKKDGEDVQMTS EAPEEVPRVRGLAVSSLKKLAAGELKNVPKVNEKKIIRKTELPVREGKKILEAPTGKR GTTAQYITKKKAKKMYKKMTHDARENFRKMQEELAGNDGEEEEEEDVEMAE" CDS complement(join(360533..360721,360895..361053, 361320..361488,362695..363418,364823..365043, 365583..365667,365709..365811,367181..367397, 367951..368036)) /gene="CBG22061" /locus_tag="CBG_22061" /standard_name="CBG22061" /product="Protein CBG22061" /note="contains similarity to Pfam domain PF01019 Gamma-glutamyltranspeptidase contains similarity to Interpro domain IPR000101 (Gamma-glutamyltranspeptidase)" /note="Predicted" /db_xref="GOA:A8Y1F8" /db_xref="InterPro:IPR000101" /db_xref="InterPro:IPR029055" /db_xref="UniProtKB/TrEMBL:A8Y1F8" /protein_id="CAP38727.2" /translation="MKIEPKKEMRMQSCSNEKLKILVLERNLSSNAYYNTFPPGTDEE NLPPEYGPFDEVEPLIEPEKPMKIRTLVTAVGLTVLVFTLLISTVAFASLYFHLLMQN TSRLPRWPGPSISPLGKYSKAAVAADNEICSEIAIASLFCIGVMDTHSSGLGGGHFMT IYNATTKECTVIDAREIAPLAATEEMYRNKWNESRIGWKAIAVPGELHGLWTEFEKFG SGKIEWRHLLKPTIDLLNEGYPTSHALAKALNQNSAQIHSEPTMKNFINPETGAVFQP GEQIKTRKNLLETLKFLANSTNPIRDFYEGAIAEKLVKEFEQNGGILKAEDFKNYRSI VHDSKNVIYTKLKNGRGVCGPPPPSGSAVAQAILNIMDGFEYNLKSFTDIATLYHHFL ESSKFSYAARSWLGDPNFVSNATEIARNITSKEWADWVRSKITEVTHPDDYYGGSFEA PPQDHGTTHVSIIDAQGNAVSVTSTINLYLGALVSSESTGILWNNEMDDFSTPGHPNF FGFPPSPANFIRPGKRPMSSQSPLVSFVIFNTNGQELMAVGGAGGSTIISGVAGVALH ALWLKADVKQAVDAPRMHNQLQPNYTWYEPNFPKAYVKSLIDRGHTMKAVNNLTVVTA AERLADGQIYANSDFRKGEESAPAGY" assembly_gap 361797..362005 /estimated_length=209 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(368829..369004,369097..369247, 369297..370339,370392..371523,371574..372410)) /gene="Cbr-imb-3" /locus_tag="CBG_22062" /standard_name="CBG22062" /product="Protein CBR-IMB-3" /note="C. briggsae CBR-IMB-3 protein; contains similarity to Pfam domain PF02985 HEAT repeat contains similarity to Interpro domain IPR000357 (HEAT)" /note="Predicted" /db_xref="GOA:A8Y1F9" /db_xref="InterPro:IPR000357" /db_xref="InterPro:IPR001494" /db_xref="InterPro:IPR016024" /db_xref="InterPro:IPR040122" /db_xref="InterPro:IPR041653" /db_xref="UniProtKB/TrEMBL:A8Y1F9" /protein_id="CAP38728.2" /translation="MDVNQFAELIQRLQSSDNEIRKKAEEQYEQIDGSAKVALLFECY NHFAQANDVSSRPFPPREISLLKALNFQIRSTVLVFLRRVLSRDWDAIWDSLNDENKQ RILAKVLEMIVHESDISIKKKIADLISEIASNLIDDSGEMSWQGVLELMDHCLKSDDL TANYIALLILRGCPIIFGNRTAHFLPALKTVLEKCMATPDLQIKSTAVRAAVAFAVDN DEEKDVIRLMTALVPNVLQVCNETSDEDDADGALGEFAELASALPKCLNSHMNQVLSV CLALAGNKDKNEMARQNAIEVICSYMESAPKGLKKYAPGALSPILETLLSCMTELDDE VLNEWLNEIEEEDDYEDVPIIAESAIDRVACCINGKVMLPAFLPLVEKLLSNDDWKMK HAALRAFSAVGEGCQRSMEPHIEQIMVHITKYVNDAHPRVQYAACNAIGQMSSDFAPT LQKKCHAAVIPALLESLDRTDVPRVCAHAASALVNFAEECPKSIIGQYLPYILQKLEN VLSAVFNRLADKRYQVVVENIVTAIASVAEAAEELFKEHHARLIPNLVHILQNVGELK ELRGKTIECISLIGYAVGKEHFHSTAIDILNLLGDGMKDLAIDDPQYSYMISSWTRFC SILGSDFAPFLPVVMEPVLRAARYRPDFNIFNNEDIQETEEGVEYHGIGGEKTVGIRT SGLEEKATACDMLVAFAKEMKEAFMPYVLDVYELAIKNLDFGLHDGVRTASAEIMPFL LVCVEKQGMEDKRRLWCEFLKALTTAMEEEDDVEILASFMSAIGSCIEVMKTEGVAPE EVKLIISVLLKQLENYGKRMSDRPAEDEDDDDAEAKEELDYFMELEASCLGAISDLTH SLMKEFKGDIFEGMINVFDCAIQLIEGSKQYFERQWGMCLLDDAIEFGVGHLPTRFPK LIPIMYKLLGDEYPEVRQAASYGFGVMAIRYHQVADYKNEILSCLEPLAAMIQREDAR ATEESTVATENAISAFSKIIANVPLPQEAYGKVVEMFLSWLPTYSDTEESPYIYAALA ELFDKQDPALFGHENQNLPRIFLVCLLSIANEAFNDDEHGQHTKRRIEQILKTIYASF PQFAQQDGVDEHLQGVLQRVLSGQ" CDS complement(join(374608..374914,375641..376320, 377573..378733,379199..379360,380446..380754, 381789..382019)) /gene="Cbr-xpo-2" /locus_tag="CBG_22063" /standard_name="CBG22063" /product="Protein CBR-XPO-2" /note="C. briggsae CBR-XPO-2 protein; contains similarity to Pfam domains PF03810 (Importin-beta N-terminal domain) , PF03378 (CAS/CSE protein, C-terminus) , PF08506 (Cse1) contains similarity to Interpro domains IPR013713 (Exportin/Importin, Cse1-like), IPR001494 (Importin-beta, N-terminal), IPR005043 (CAS/CSE, C-terminal)" /note="Predicted" /db_xref="GOA:A8Y1G0" /db_xref="InterPro:IPR001494" /db_xref="InterPro:IPR005043" /db_xref="InterPro:IPR011989" /db_xref="InterPro:IPR013713" /db_xref="InterPro:IPR016024" /db_xref="UniProtKB/TrEMBL:A8Y1G0" /protein_id="CAP38729.2" /translation="MEQIGAALQQTLEPNAAIRKQGEDALRTLQATPGYIIQILQLVV NEEQQVAPQIRMAAAVALKNFVKRNWVREKAIHGPAPEVEMSQEDEEQFRNMLLEAMF NTKANIQDILSNALYLIAQRDFPEKWPELVPYLSRFLSGDDLNHLIASLTSMDQIFRK FRYSSKSTELWRELLKCLQSTQEPLTMLLAKMMEVGQQKDQLGDEMMSQWLKVLNLIA KVYHSLCVQEIPEYFEDHLNDWMPHFLLLVSIDVPSQTSSGGEPTTLDELKHEICEIF ALYSQKYEEEIAKFVPDIISAVWHLLEKTGPDTRYDTMVCAALEFLSMVSQRQYYESH FTGEGVLKTLAENVCVQNLLLRQQDMELFEDEPLDYMKRDIEGTDVGTRRRGAIDLAR GLCRRFEDKMLPCLGEIAQNLLASGEWIKVDIAYSLITAVAVKSETAKNGVTATNPLV DINDFFIGHVATHLNSDVNQTPILKADALKFAVTFRKQLAPEHLMTAIKASDALLSSA TPILHKYAAYAIERILLSDSQNAQKVFSAHNLPVASILQNLVAAFDKDPKAQNSPYLI KAVLRIIVILDDETIRHADAIAKKLAQLIESATKNPADSVHTHFLFETICVLVTKTRT IGASLDAQLLPLIEVIFREDLEDLIPYALQITGVLVSSCIARNASIDQFAAFLPFLLS ERLWARSANVPAALSVLEVLMSVNGQQVVAGNSNLILNHLTRLLNSKTLDQYGFQLAS AILPSIEHFEGDAMKHLLTSMFNRVQSSKTSKFMKLFVVFLCRFTIIRGAQDLVKSCE SMQTGMFGLLIEKVVCLEMPALKHTTTATEKRIIAIGMGNLLAEATQQLINHYGILTH ETAMLLDAAAASDRAIMSPEEEQASMYNAEGEFVNPFCRLSYAPKPKPIADQITNHKA YFAQAALVRGPGNVPDTLKTVPPEIASYLRSLHNV" CDS join(382408..382491,382626..382884,382967..383226, 384338..384451,385215..385958,388149..388435, 389101..389233,389752..389979,391636..392028) /gene="CBG22064" /locus_tag="CBG_22064" /standard_name="CBG22064" /product="Protein CBG22064" /note="contains similarity to Pfam domain PF04147 Nop14-like family contains similarity to Interpro domain IPR007276 (Nop14-like protein)" /note="Predicted" /db_xref="GOA:A8Y1G1" /db_xref="InterPro:IPR007276" /db_xref="UniProtKB/TrEMBL:A8Y1G1" /protein_id="CAP38730.2" /translation="MGIGAKKNAQKQKKINPFELKFNKSKYDILGRKKGAQVGAPTAS RKRAHEQREKTLGVEFDRKNKISKIVDKRLGERDDKTEEEKGAMRFTEERVKNYKRAS KFNLADDQDEEEVTITHKGKSLSDIEKYDKSMISDSDDDEEPGNLGSQMVRIAHFGGG EKTAEEMVKEKISREDMISNLIAKTKLARHEKQQQKDELVSELMTESLDSKYAALMAK MKSSFRPTGRQQLEKDDYDRLAITLKTEADARATPADRKLSEEEEALKEKERLDSLEA ARISKSNASLNSRSHVSADADVDVDAGAKADSRKLKAKNARFEVKFDDEGGLIDGDVE RSRILKTSGDSDEEEEDDELDDEEEEEDLDDLMEDEEELEDSEEDEEEEEAGVKKGKK SKETVATDLPFVFEMPKNYKKFCALLEKHAESMDLVLERLVKCHHPSLKEGNKKRLNK MFLMVLRWFDDMAKEEVTMQSVKEMNLAQATMFSLMKFDIQYGVRCVRALIRQHWKGR QEKEAKSPASFGLISAIRLVSGLFPVADQWHPVVVPAFFLATEALCSAKIPNLGVLAR QIQLANAIVEYVAESKRYVPELVAFARSALLLAVTEKPEKFSTNGFPISAPHSEMLCV REKITDAALQPISLGSIFNETLPDSPSLKITVLRALLSLIQHLRVMYTAQNETYNIVF EPFLKTLNAIQTENLPKEVQEELETLIASMKAEIGAKRRLVHLSLVKTEKSMLKMLEP RFEWDFDPERPHKGPKDDKKKLVKNLRNEQRGAIKELRKDTAFLARKQMSNVKSKDRA RIAATKRVMGGLMQQQGEWNKEKRTADVEKKKTKK" CDS complement(join(394195..394215,396032..396351, 396924..397027,397422..397600)) /gene="CBG22065" /locus_tag="CBG_22065" /standard_name="CBG22065" /product="Protein CBG22065" /note="contains similarity to Pfam domains PF12796 (Ankyrin repeats (3 copies)) , PF00023 (Ankyrin repeat) contains similarity to Interpro domains IPR002110 (Ankyrin repeat), IPR020683 (Ankyrin repeat-containing domain)" /note="Predicted" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR020683" /db_xref="InterPro:IPR036770" /db_xref="UniProtKB/TrEMBL:A8Y1G2" /protein_id="CAP38731.2" /translation="MTTPEAPAQAPPPPPPPKSALFDAIDKNETEKALELLKTREHAK ERDASGMSVLASAAYRGNLKLVEKAIELGCDVNEKTDDNLFTPLMFAALSGKQDVCRF LMDSGARMYCVNGIGKTASELAAFVGNHECVAIINNHISIDLVEEFLRPKINGEYVGE ERYPDELLEFIHSLCGSHEVHPVKIIFRFSQYSDSLKYKKKQWLGEG" tRNA complement(398550..398621) /gene="CBG28394" /locus_tag="CBG_28394" /standard_name="CBG28394" /product="RNA transcript CBG28394" /note="C. briggsae predicted tRNA" assembly_gap 399158..400157 /estimated_length=1000 /gap_type="between scaffolds" CDS join(400817..400919,401135..401364,402476..402689, 402837..402956,403012..403088,403966..404343, 405755..405889,407383..407817,408896..409051) /gene="Cbr-daf-25" /locus_tag="CBG_22067" /standard_name="CBG22067" /product="Protein CBR-DAF-25" /note="C. briggsae CBR-DAF-25 protein; contains similarity to Pfam domain PF01753 MYND finger contains similarity to Interpro domain IPR002893 (Zinc finger, MYND-type)" /note="Predicted" /db_xref="GOA:A8Y1G4" /db_xref="InterPro:IPR002893" /db_xref="InterPro:IPR007529" /db_xref="UniProtKB/TrEMBL:A8Y1G4" /protein_id="CAP38733.2" /translation="MYIELYTENSNTRLIGALNSLITGKLADLDPVVKRLFLEMQQIR PIEYYEYYIELLGELQMCSVIDKTDEKQLPRVIQLIGLLSELKLQDVPKACGKLYYLM GTMKGDGKKKSSVMDNAVKSKLLPKIFDSIILSAGGSKILNLSRNSVHKMVELVINEK YSYAEQATISFAPLQFLNRIFQEFEIWEKSWAALKNRLDSFKMSNPQAPIVFLYFLSL IYRNDQSLIGCLVEFLELQYHQNSENSEIKNFSNAEINQFLAKKSFCNSEFSILIDKL KDDLNFSITSDTFWRILLEKIDENSMIFIENQLKMLINRQDRKSIQTKIEQIFRKILK NFEEKSTKKLELVLLKFPKILFDFNDEQWRLMPPTTTISLKKERILQISAILFEKLAA ELQRSGDTNGKAPFCQISTIIDDYLKKILYVIDRVFERQLRCKESNEIMSLKLWLILF FMRETSKFVESHPDKTPEDASLQYAKIISTWQEGDEIRRALDVLLRNAVAAFPYKHSL LHETLLKALGRTPVGQRPSAYEYIVQSLFGQRIAAVCQFCTVCGHPGAKKRCPQCKLA YCSQECQKFDWTIHKKVCSSLKGNQEISADDGHMMPLDQIQDQISKIDI" assembly_gap 406363..407362 /estimated_length=1000 /gap_type="between scaffolds" CDS complement(join(411411..411458,412686..412761, 412977..413168,413270..413563,413613..413678, 413809..413906)) /gene="CBG22068" /locus_tag="CBG_22068" /standard_name="CBG22068" /product="Protein CBG22068" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1G5" /protein_id="CAP38734.1" /translation="MIKSIKYDHNDEDEHMVLLRQKHNKYNWDTIMQSSNKDPSPYFK LNVFGRKIAFRMTKRYGQYFPVACFRTNERKSVIKLIHYYFLNFFGDSMEYLWIIIHY PPFVPNVPKLSVCLGMWMDWFCGIEPVENFFSSYPMMKHVQMYITPARPLRCFTGCKI SDLILFVIRWKFGEAYHKLERMEVGEVDEEQNRILEAIGAKHIDPAKKAPMHSLPRVF NRYFEPNTKAIKSRAYVVRETDNRIFCNFQKIICFSRIF" CDS join(415930..416033,418005..418052,418149..418327, 418764..418934,419264..419358,419425..419611, 419801..420033) /gene="CBG22069" /locus_tag="CBG_22069" /standard_name="CBG22069" /product="Protein CBG22069" /note="contains similarity to Pfam domains PF00071 (Ras family) , PF08477 (Miro-like protein) contains similarity to Interpro domains IPR013684 (Mitochondrial Rho-like), IPR001806 (Small GTPase superfamily), IPR003579 (Small GTPase superfamily, Rab type), IPR020849 (Small GTPase superfamily, Ras type)" /note="Predicted" /db_xref="GOA:A8Y1G6" /db_xref="InterPro:IPR001806" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8Y1G6" /protein_id="CAP38735.2" /translation="MSNRRVSLPVALAIPQQFPSRLSPPSPASPAANRRSENSPRRVK KRRPPPRYQYSLQTASIMNQQNSEELDEEKPEGTLRSFGIKNGHVIDNGYKNLSQMAT KPIAMHNYKDRRATCPEVWLFQETSNIPMQHIVLRIYGSKNCGKKTLLNSINQFATKL VTRYNNESTDGDENTSKTLNFLLNNEQIELEMLLESTLENSPFASSLTMYAVVYNVDS RESFQCATELVQRLLSRKIARGPNVMIIGNKIDLKRNTVVSKLEGACLAKIHKCHFIE VSAQYSMNISELWTIVLKQLQNPKTSSDPDDVASESNGWMHRMVARGKQLAHSAEQIV QKFL" CDS complement(join(420981..421031,421096..421390, 421832..421971)) /gene="CBG25181" /locus_tag="CBG_25181" /standard_name="CBG25181" /product="Protein CBG25181" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IM06" /protein_id="CAS00936.1" /translation="MAQCSGLQALLIFLNSCFFILGTQCYQSSYHGSCHGMGYGDSLF ESEQSTKPGMSQCSPSSVDVGVRTKCQFLLQMSIQMSRTFEALSDETQLKYALQHLHQ CGFDFGTALDTVDQKLLHTRLKKRSRFQQVKLMINPEVTRRDKVLRESDTKGTNLHGF L" CDS complement(join(422464..422476,424719..425005, 425524..425676,425845..425937)) /gene="Cbr-ztf-3" /locus_tag="CBG_22071" /standard_name="CBG22071" /product="Protein CBR-ZTF-3" /note="C. briggsae CBR-ZTF-3 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1G7" /protein_id="CAP38736.2" /translation="MSENEDYRKFLEASGYIQQFTANLLRRNEAKPPEISGNLSNINQ LIDLVKQLIQEQRNLTQKVDAVNSGQRNINSLIKEKLGDPNLPSTSSAFPSSYRLNQQ LDSDLQQNFNLELILGQIKSSTTSSAHFDHYENVNNYSNFFDSSSLDSSPNSKKNGAG KCKKRQIDTQFSHLGPYHFRI" assembly_gap 429594..430200 /estimated_length=607 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 434188..436065 /estimated_length=1878 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(447611..447618,447916..448025,448175..448247, 449377..450024,450709..450871,451011..451163) /gene="CBG22074" /locus_tag="CBG_22074" /standard_name="CBG22074" /product="Protein CBG22074" /note="Predicted" /db_xref="GOA:A8Y1G8" /db_xref="InterPro:IPR022049" /db_xref="UniProtKB/TrEMBL:A8Y1G8" /protein_id="CAP38737.2" /translation="MQKCEQECGEEAWRIACCSRVGKIAICVMSIAILYLIISALTPT ESTHKAADLDVPRAGINLTRANQVLTSLCDAYERGDVSGDSCNRLCYDRNWLVTDFYE GHKTVVIVKDGGQTAVYKSTKPFMNDFDEPQDHLTDAQFSDRVVDVVNNELRLGWPKH YSRHLMETVWPTLLRTKGEAMSRADRRSLWALLKQPEFILFRVLPLTRVTPKLIGTCG HMYQTESLVAFKMKGYYTNLKAKILVHVMGTLKLLYEFLDEPLQWCDVRFDNLGLSAD YPKRFVLMDGDMVYTKSKLDSLLKGRPCETDDDCKIGDCTARCTANMVCSSRSNGNLE VFCDKLVNKLFANQWSKNNKYLVACRDTGRNITTRLNELRLTWSWNLPDV" CDS complement(join(452536..452748,453467..453974, 454612..454737,455080..455307,456825..457085, 457395..457573,458392..458480,458614..458710, 458826..458993,463860..464058,464496..464740, 465274..465456,466011..466140,466190..466284, 466497..466586,466732..466803)) /gene="CBG22075" /locus_tag="CBG_22075" /standard_name="CBG22075" /product="Protein CBG22075" /note="contains similarity to Pfam domains PF00018 (SH3 domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR001452 (Src homology-3 domain), IPR000980 (SH2 motif)" /note="Predicted" /db_xref="GOA:A8Y1G9" /db_xref="InterPro:IPR000980" /db_xref="InterPro:IPR001452" /db_xref="InterPro:IPR008936" /db_xref="InterPro:IPR036028" /db_xref="InterPro:IPR036860" /db_xref="UniProtKB/TrEMBL:A8Y1G9" /protein_id="CAP38738.2" /translation="MLHHSNENNTPNAAEGSPPAIFSKSHDSRPADISAEDVWYHGEL NEHDANRLLQGTTPGAFLVRQTGPTRFYLSILDNDGYPKHIPIRQLTTPHYFFEGKRY EKLREIVEAFKSALFPIRKGGIMPLNGEIVEIKYLCIRSFEKRNSDEMTAELGDILTL CETDEIGWMMGRNEANGSVGIVLKSHLKPLISTVDSLSDLPYFYDTVTQEMLQFNPIG TFLLRRSSKGTDTYALLVKTQFDLIEKFLIVGSPPRGFSLAGRPFPTIGHVVARYSER AISGGVRLTRAVCDGAEEQQQIRKASGRSATTEIRWPPSSEKTSIASMSSSQYDDVLK ERKEKTRRMFRGASIDTALVATSSAATTSSTFLTPSGANSMSTAMPSPANTISTGVPE HMFDHRFNYEDINELSETSSTSATTVASTVALRKSREDKQWKDCWLTLSDNPCGSSQL SVFDSQNSKLRQQLNLSTCTMFWLDESVFSADGCLFLAPPFPSNQPTLYVCFRPFSTF LKWVRMLRSRTIYQDVPPPMLQGTISVGEPNSQVSFLSVEIDKYRLDSLKTEQFYSAC VSVNGVKVGVSNSFAPAGNKGPNELATVVIDSKFVIPCIPTCSTNIQLSMLSHSSQTK KGRPCGTTVTVSLNENNESVIQQSVDTAGFVFRAHRIRCPVLPLERYRPMLEMLRESP SQLLSWPSQVLPLHLKQFMYSCISHLYALSPQMMSPVIRKVIHDVLTTSTPEDVFRKD SLATGIITQCLRHLFKTPFDEFLLENSQFSQSLKSPDAAVELLVQFVDQRLLTIPLAS RLLVLAAECARARFDGGEESHLVKRTLSALLILRVLNPIVFSTLNNGIGSQIAKNVQI SANSAASQATNESLTPAAMTIRRMFERMILLVDQQPSNTENQYQSIINSSSSEEIHTE WVSCLAYIIAHSLTIRPSGNATTSSTSSEDVNLPISILELVRLHQM" CDS join(469411..469419,469968..470051,470099..470198, 470248..470336,470909..471165,471298..471378, 471596..471626,472173..472256,472378..472443, 472523..472547,472618..472698,474253..474338, 474380..474642,474889..474969,476066..476102, 476173..476238,477710..477885,478048..478128, 478201..478270) /gene="CBG22077" /locus_tag="CBG_22077" /standard_name="CBG22077" /product="Protein CBG22077" /note="contains similarity to Pfam domains PF01470 (Pyroglutamyl peptidase) , PF06162 (Caenorhabditis elegans protein of unknown function (DUF976)) (2)contains similarity to Interpro domains IPR010381 (Protein of unknown function DUF976, Caenorhabditis species), IPR016125 (Peptidase C15, pyroglutamyl peptidase I-like), IPR000816 (Peptidase C15, pyroglutamyl peptidase I)" /note="Predicted" /db_xref="GOA:A8Y1H1" /db_xref="InterPro:IPR010381" /db_xref="InterPro:IPR016125" /db_xref="InterPro:IPR036440" /db_xref="UniProtKB/TrEMBL:A8Y1H1" /protein_id="CAP38740.2" /translation="MMGPNNLGDVNDMLTLCERFPEDITGNVIIDWTKSVAIAGFKSP EDPQNSTSLILDELEKEGVENKELRFFKYEMCFKEIEEEIPKIRRSQHNDFVLHLAPH SMPNTILIETTAFLSGYSNPDRNGKVPKNFKAKMDSEISEWKTRVDCEEIVKALNENF ELDGMKFGGLKIEKSDDPGRSIAGFTYYLSLCDDDWATLLVKVPPFEGECTKEAVTNG SSICRIFKKKQFFKFENCGNPRARMMGVDCLGDVSDMLTMCNRRMLLPDDIKTVVITA CNDPYENSQENPSSEVLDELMSNPGEHIKILSHKIPTTFKAVNKKVPELRRIWPQQVL HLAPHSTPKIIYFEAKAFSDRYSNPDKNGSVPEGNAIKLKEDDDRKVMEPFVDFKSLM DELNEKFGLDGNKFGGLKIEKSENIGRSVEGYLYFLSLREGPMSTLFVRIPLFEDFLH KKRRKMMGTDCLGDPADMLTMCNKGTVTGQFILHLAAHSTPKIIYLEKMAFSNGYCNP LESTVDFKYLLDELDEKCEQLKIKKSENMERSIDNYLYSLTLRESSQKTLLIRIPPFD DEYTKEAITSVIREVMRALTRD" assembly_gap 475282..475423 /estimated_length=142 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(480755..480901,481983..482225, 482719..482836,483505..483602,483818..483937, 486375..486536,488061..488153)) /gene="Cbr-gsa-1" /locus_tag="CBG_22078" /standard_name="CBG22078" /product="Protein CBR-GSA-1" /note="C. briggsae CBR-GSA-1 protein; contains similarity to Pfam domain PF00503 G-protein alpha subunit contains similarity to Interpro domains IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR000367 (G-protein alpha subunit, group S)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1H2" /db_xref="InterPro:IPR000367" /db_xref="InterPro:IPR001019" /db_xref="InterPro:IPR011025" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8Y1H2" /protein_id="CAP38741.2" /translation="MGCVGGGADQEGREARKVNKQIEEQLAKDKQVMRATHRLLLLGA GESGKSTIVKQMRILHINGFNADEKREKIKDIRRNVRDAMQVMLKAMEEIDPPIALDQ PSTAASRDYVMSVTNDPEDNYPPEFYDHILVCWKDKGVIACFERSSEYQLIDCAQYFL DKVDIVRQNNYDPSEQDILRCRVMTTGIFETKFEVDKTPRIACPIQKHLEQQMAENHL GHFVPQQTGLVVREDQSQRYLLESFFPEFEGYNLPNDAVYDNQEDRDVVRAKYFIRGE FLRISTANSDGRHHCYPHFTCAVDTENIRRVFNDCRDIIQRIHLRQYELL" assembly_gap 486847..487021 /estimated_length=175 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 493872..494109 /estimated_length=238 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(496011..496031,496125..496236,497066..497235, 497309..497446) /gene="CBG22081" /locus_tag="CBG_22081" /standard_name="CBG22081" /product="Protein CBG22081" /note="contains similarity to Pfam domain PF04212 MIT (microtubule interacting and transport) domain contains similarity to Interpro domain IPR007330 (MIT)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1H3" /db_xref="InterPro:IPR007330" /db_xref="InterPro:IPR036181" /db_xref="UniProtKB/TrEMBL:A8Y1H3" /protein_id="CAP38742.1" /translation="MSNTALQKAIELVTKATEEDTAGKYDAALRFYDQAIEYFLHAIK YESQGDKQKNAIRDKVAQYLNRAEQIKSFLKDSKSQKKPVKDGKDSSDEDDDKKKFQD KLSGAIVMEKPNVKWNDIAGLEGAKEALKEAVILPIKFPQLFTG" CDS complement(join(498183..498444,498550..498956, 499949..500257)) /gene="CBG22082" /locus_tag="CBG_22082" /standard_name="CBG22082" /product="Protein CBG22082" /note="contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domain IPR000276 (GPCR, rhodopsin-like, 7TM)" /note="Predicted" /db_xref="GOA:A8Y1H4" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR017452" /db_xref="UniProtKB/TrEMBL:A8Y1H4" /protein_id="CAP38743.1" /translation="MYGLFNSSEIDEEYYNATHTSAPSPILALIFTVICGIGVIGNAS LLVYIIVQKLYHNFISSHFIAHLCFTNLIALLVLVPVIIHNVFTGVNLLQASNWLCRV QVSLTVTVWTVMAMMNLCIAGVHLLTFARIHYEQLFGLSPTKLCVLSWIISWLLSLPS LTNGHVAIYGPAVRTCVFSHSDSGLKFLTYTLIFGVFIPALFSSFAYFRILQILFHSP IVFQSLGLYKSRFLVYFFLLGPLYALPFYILTALDPTDPLRISQNTLWTIACTMIAFV PCIVAPLLYGASIFIIKEEDMALTARTHKAPPGAYHHVAQQHNMQAQLI" assembly_gap 499427..499850 /estimated_length=424 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(500682..500712,502223..502443,502580..502743, 503026..503244,503578..503722,504407..504514) /gene="Cbr-vps-4" /locus_tag="CBG_22083" /standard_name="CBG22083" /product="Protein CBR-VPS-4" /note="C. briggsae CBR-VPS-4 protein; contains similarity to Pfam domains PF00004 (ATPase family associated with various cellular activities (AAA)) , PF05496 (Holliday junction DNA helicase ruvB N-terminus) , PF01695 (IstB-like ATP binding protein) , PF09336 (Vps4 C terminal oligomerisation domain) contains similarity to Interpro domains IPR003959 (ATPase, AAA-type, core), IPR015415 (Vps4 oligomerisation, C-terminal), IPR002611 (IstB-like ATP-binding protein), IPR003960 (ATPase, AAA-type, conserved site), IPR003593 (ATPase, AAA+ type, core), IPR008824 (DNA helicase, Holliday junction RuvB type, N-terminal)" /note="Predicted" /db_xref="GOA:A8Y1H5" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR003960" /db_xref="InterPro:IPR015415" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR041569" /db_xref="UniProtKB/TrEMBL:A8Y1H5" /protein_id="CAP38744.2" /translation="MRKKKKRSLSRNRKPWQGILLFGPPGTGKSYIAKAVATEAGEST FFSISSSDLMSKWLGESEKLVKNLFALAREHKPSIIFIDEIDSLCSARSDNESESARR IKTEFMVQMQGVGLNNDGILVLGATNIPWILDAAIRRRFEKRIYIPLPDIHARKEMFR IDVGKNYNTLTDQDFKVLAERCEGYSGYDISILVKDALMQPVRRVQSATHFKHVSGPS PKDPNIIVNDLLSPCSPGDPHAIAMSWLDVPGDKLANPPLSMQDICRSLAQVKPTVNN TDLDRLEAFKNDFGQDGQE" CDS join(509035..509137,509312..509517) /gene="CBG22085" /locus_tag="CBG_22085" /standard_name="CBG22085" /product="Protein CBG22085" /note="Predicted" /db_xref="GOA:A8Y1H6" /db_xref="UniProtKB/TrEMBL:A8Y1H6" /protein_id="CAP38745.2" /translation="MAREGVAPQLDNSHIAATVAPVVKETTTVASLASGTVTIQYSHI LLALIAFVVLSIGVVTVIKKRSRQKTGFRNRRGAGAGGHSILQQDSDEDDILISSMYS " CDS join(517777..517818,518756..518975,519621..519734, 519789..519864,519912..519978) /gene="CBG22086" /locus_tag="CBG_22086" /standard_name="CBG22086" /product="Protein CBG22086" /note="Predicted" /db_xref="GOA:A8Y1H7" /db_xref="InterPro:IPR036259" /db_xref="UniProtKB/TrEMBL:A8Y1H7" /protein_id="CAP38746.2" /translation="MLCCSKKQSKQAIRVSLIISVLVDVCLCAALFVSLAYYWINGKS FSPHYIVGFMAFFVLFAGFFISLMVAVHTKDIRAILVSVAFTVTRFICAIIVVISWMS EYHSTEEANKAAKEGEDPYEWISHRKAILLAFAGIYIKIFISQLFILNRYYSHAAETE REAKEREIDMEF" assembly_gap 519063..519072 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(520776..520847,520984..521094) /gene="CBG22087" /locus_tag="CBG_22087" /standard_name="CBG22087" /product="Protein CBG22087" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1H8" /protein_id="CAP38747.1" /translation="MKEVLEEDYSDLWHEQEFCLAFLALQDEHQRLVRLAKSNSDGEN PRRFHWANRYAKIRIK" CDS complement(join(521646..521780,522374..522553, 522921..523046,523674..523849,524146..524317, 525338..525598,526273..526398)) /gene="CBG22088" /locus_tag="CBG_22088" /standard_name="CBG22088" /product="Protein CBG22088" /note="contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR020636 (Calcium/calmodulin-dependent/calcium- dependent protein kinase), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1H9" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="UniProtKB/TrEMBL:A8Y1H9" /protein_id="CAP38748.1" /translation="MGNCSQKQSGSTVGSSGTSFFSNLFHKAHIDPHALAQTCPPPHG GEMPLGECAVLRDRPAMRFDSRLVCKYEVLAVVGKGSFSQVLRVQHRVTRKYYAVKVV NGDCGAVNNELNILSRMSHPFVIRLEEVFKSSSKLFIVMQMASGGEMYDRVVAKGRYS EEEARNALKMLLTGLTYLHSIRVTHRDLKPENLLYSDARPEARLLITDFGLAYQATKP NETMTETCGTPEYIAPELLLRVPYTQKVDMWAVGVIAYILMSGIMPFDDDCRSRLYTH IITANYVYYPQFWSGSELAKQFVDSLLETNSAERLSASSAMKHEWLTGERPTTSQNRP PTRPTSEYNSMQRTKSTRSIRSVTRSDHGHRVDPREVDELANDLKRVAQTTKNYGVF" assembly_gap 532219..532835 /estimated_length=617 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(543776..543868,543915..544154,544260..544376, 545638..546018,546836..547042,547291..547507, 548379..548470,548516..548618,549384..549642, 553215..553543,554186..554406,562729..562827) /gene="Cbr-npp-13" /locus_tag="CBG_22089" /standard_name="CBG22089" /product="Protein CBR-NPP-13" /note="C. briggsae CBR-NPP-13 protein; contains similarity to Pfam domain PF04097 Nup93/Nic96 contains similarity to Interpro domain IPR007231 (Nucleoporin interacting component Nup93/Nic96)" /note="Predicted" /db_xref="GOA:A8Y1I0" /db_xref="InterPro:IPR007231" /db_xref="UniProtKB/TrEMBL:A8Y1I0" /protein_id="CAP38749.1" /translation="MLHFEEILGRVDHQGLTKLFGASLFQSQDVDTSHNFTVRNGVEH ELCGILGGSEGNWQRDAQPVQKKMMFGERGIQIPSRQAEAHSSEETFTEDGIVEIPQA VIDDIDEEELDEDILRVKVETDRAFFNHMLLARPAAVPMTPAQAMERDDLPTGNGTFV NKNISDRRELLFGDKLHKYLKSQGKKSLVELMKEAVEESGTDGALADVWNDVTSVLNR KTVASRDDVTTTANLLEDACRYLQKVFTDHMQTVVERNLEIAERGGIPGKRGLVNAFL KVGTEEPFQPEDDSIDGMPTWQVTYHCVRAGDMQAAAETLNRLKSFPQCATLVASLNH VAKHKKLDAELKKKLKVEWRHNVGHTKDKYKRALYAALLGGLESAALADTLENWIWFK LYPLHVDPQLTPLLFQEVQKAVSIDYGEQYFMSNGPSEFQYFFTALWLSGQFERAIYL LHECGQRVDSVHVAILAHKLGYLRMSVKSTDEMLVVDPNDATKCHLNLARLIVAYTKN FELIDVPRSLDYWFLLKGISTPTGSDVFEMAVSRSVYLTGQCDAILGTLTPDGRREKG LIDEYLDDPSEVINRVASDTELTGEWDQAVSLYLLASKSTNAAKLLSSEISETLRADN KEKIGELVTVAEQFKRVQKGCQAAEYATLSLLVDLAVLFDHCRNDNADTAYGLVFDLR LIPTEPDQVTVIVNEFHMVPQKVREVLPDMCLHLMKCLVDHCIRQSTSLANRGANAAN TSMFSSSNRYVKQIKAIVLYSATVPYKFPTHVTSKLLQLQASLGF" assembly_gap 545278..545434 /estimated_length=157 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(550277..550654,550975..551115)) /gene="CBG22090" /locus_tag="CBG_22090" /standard_name="CBG22090" /product="Protein CBG22090" /note="Predicted" /db_xref="GOA:A8Y1I1" /db_xref="UniProtKB/TrEMBL:A8Y1I1" /protein_id="CAP38750.1" /translation="MFGEFSPFLDLQTTSSLFYCVLVHILIAVTMLGFCAKKSKKEEV KSEPQSARDPLASQETPREPGGGNERSRHHFTPPHIATAAPGPSALRTQHHRPCPVHC HFSETSNDASDSFVDSADTSDIEFDSTQSLSGGDHNSYLAEQCTCICAPKQVRFQCPK TSSRSLSSRRFI" CDS complement(join(554613..554798,554996..555604, 555678..555808,555857..556063,556126..556347, 556404..556548)) /gene="CBG22091" /locus_tag="CBG_22091" /standard_name="CBG22091" /product="Protein CBG22091" /note="contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domain IPR011701 (Major facilitator superfamily)" /note="Predicted" /db_xref="GOA:A8Y1I2" /db_xref="InterPro:IPR009716" /db_xref="InterPro:IPR036259" /db_xref="UniProtKB/TrEMBL:A8Y1I2" /protein_id="CAP38751.2" /translation="MWSFVIGLFMHQLGGMTWVAVQQLVDSLLKLFGITFIGQFLDKI DRDKIIQRTLLLNNAAVALSALIFAGMFQYRPENYATLYLLIASAIASVSKVASEIQR ICFTKDWVVVISRSERVDLSKVNSYLLSIDQASSLALPWVSGWLLDHFPWQTVCLIII AYNCGSWVLEAYILRNLYQNTEGLKTRSSELEGDEELMGIKDIRMNTVTTYFRQSSWT AGFGLALLYMTVLGFDNLAASYGQKHGLSAGYIGFLRGVGSLLGIAGTLSYHHISKRV GLLWTVMIGLIWQNIFIEMCGVSMLLPGSSMDVSGFIQNTTASQWVSKVVHKVTNPEP QDVPSIPFWEVSLPVNLFFFGIMFARFGLWLADPAITQIQQETIREDQRYMVFSVQLG LNELFSVLKDIIVIMFPFTSLFGALTLGSCAFVFAGFVFNLFYHAQCGFSLTNKNMHL VEQESTEMSDLSDTSPERQSLIGGVSGDLRAVEEETKATSSTNNEEETH" assembly_gap 564144..564463 /estimated_length=320 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 566151..566160 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(568220..568415,570374..570507,571452..571547, 571921..571947,572399..572770,573754..574358, 575819..576047,577825..578013,579033..579481, 579805..580006,581673..581747) /gene="CBG22093" /locus_tag="CBG_22093" /standard_name="CBG22093" /product="Protein CBG22093" /note="contains similarity to Pfam domains PF01266 (FAD dependent oxidoreductase) , PF08669 (Glycine cleavage T-protein C-terminal barrel domain) , PF01571 (Aminomethyltransferase folate-binding domain) contains similarity to Interpro domains IPR006076 (FAD dependent oxidoreductase), IPR006222 (Glycine cleavage T-protein, N-terminal), IPR005829 (Sugar transporter, conserved site), IPR013977 (Glycine cleavage T-protein, C-terminal barrel)" /note="Predicted" /db_xref="GOA:A8Y1I3" /db_xref="InterPro:IPR006076" /db_xref="InterPro:IPR006222" /db_xref="InterPro:IPR013977" /db_xref="InterPro:IPR027266" /db_xref="InterPro:IPR029043" /db_xref="InterPro:IPR032503" /db_xref="InterPro:IPR036188" /db_xref="UniProtKB/TrEMBL:A8Y1I3" /protein_id="CAP38752.2" /translation="MLHASRSLIRTSSDHLHAATMIRNSSTATKHVFACVLGSGVAGS SVAYHLTKRNIKDVLLLERASGVASPTGTSFHSPGLVSASHPAHRYKPILAHSIELYS KLEEETGVKIDFQPTGTIRLATNETRLAEFRKYVNRDYYKGLGKIEEPPEGDVCKTTL LTPDQVRELAPAVDHSRVLGALHTTNDGTISARALTQALVVGAKAGGAQVIDGAIPRE IRYDKEKGHWIVALEDGTLVTTRNLINAGGIWANDIARLSGHNLPVVVVEHQYAVLTP NKTPDNTPAIIDHDSTFYVRKSGDDYLFGGFEPLEKTVIREDWYKKGVPTEGSKSIKA DFSRLDDAYKRACDLIPSLEGAKIDARAAVFSMTPDGYPLVGPYDKNYWMSTGFLDGV SSGGGIGKYLADWIVDGEPPAELFDTDASRYERWGDRKFFTERSRETYSMYYNWSYTD RLAGRPTDRISGVYGRLKKDGASFSFRNGWEVANSFNMGVQNEEYLPTLIREYEMVTN KCGVIDLSWKGKIEVKGRDAEKLMDYAIASQVGRTGSWLKIWEKWIPALGKISSGLML TRHGGILGPMMIFHHDRQRSAFILLTEPERESRDLYWLRRAAAEKQMDVQVSIVSEYL ASLALVGPKSREVLSALTKSDVSDEGFPQKSTRMIRLGPVGVVCARSSTSTGQLSFEL FHNRAETAKLYHAVMGAGRDHGIVNFGQAALNMMRLEHGYKIWGKELTLDTNPFECGI GSLVDFNKKEFIGRESALEFSKKEFDRRLALITFDTEEGIVLDDKYVPSGNEVIRIDG QEARVGQITSGAYNVRLQKPIAFAWIDNSVGKNERLVVDIGDKRLFATSLETPTIPPI Q" assembly_gap 568793..569004 /estimated_length=212 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 576820..577277 /estimated_length=458 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 580930..581244 /estimated_length=315 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(582234..582461,583225..583418, 584536..584734)) /gene="CBG22094" /locus_tag="CBG_22094" /standard_name="CBG22094" /product="Protein CBG22094" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1I4" /protein_id="CAP38753.1" /translation="MIRKMGLMGPNEIAPAKEPKRARKEQRERTIDEMIDESYRQLIA DVKSELMSKFEELRDGLRKSTIQSVQSELEDLSECILGAVRDAYDGLTDSEGEDDDEQ QDEEEQEEDTSIQLESARDSDGESVMIVERNTPSPTSSVIIVENPMRSSEESNSSDSS SSSSSSPSTSSGDESDDEENEGMDGMEAMSIEWTSDDEEEDEVWGN" assembly_gap 584211..584297 /estimated_length=87 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(587456..587594,587710..587984) /gene="CBG22095" /locus_tag="CBG_22095" /standard_name="CBG22095" /product="Protein CBG22095" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1I5" /protein_id="CAP38754.1" /translation="MKPEDLKKSRVIPSGPSTSATSGGIKAKLDFRTPTGIPPKPALN STANHPSVQSSQLVRPHLDDKWKEFGDSIVLNLETFEKSVDDAILAGNFNKVARMFVA ALKSFLEGDKLKIELRLMGTIGLTVKTHGDKLNVS" assembly_gap 588749..589356 /estimated_length=608 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 590779..591884 /estimated_length=1106 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(<592190..592498,593827..594186,594648..595049, 595454..595953,596799..597102,600492..600500, 600502..600852,602309..602587,605035..605259, 606703..607027,607889..608067,608384..608719, 608722..608964,609800..610156,610792..611060, 612338..612401,612755..612982,614062..>614157) /codon_start=1 /gene="CBG22096" /locus_tag="CBG_22096" /standard_name="CBG22096" /product="Protein CBG22096" /note="contains similarity to Pfam domain PF12432 Protein of unknown function (DUF3677) contains similarity to Interpro domain IPR022145 (Protein of unknown function DUF3677)" /note="Predicted" /db_xref="GOA:A8Y1I6" /db_xref="InterPro:IPR016024" /db_xref="InterPro:IPR022145" /db_xref="InterPro:IPR038902" /db_xref="UniProtKB/TrEMBL:A8Y1I6" /protein_id="CAP38755.1" /translation="SPRSDAQNTQLEVFLEFLKPWFETIRGEVLPKPLFRALCLLCGS ENVRQFISSRLEIWITLQKFHREISELLLVLGTNINVKQYEMDREMIDVLLKLNTKNM KTRTVVGPFNVCLRRICDLPANVEIVLESLVVNETGPPQNRSNNNVQTIYMILNSHTE EATKALARITSRELIKEKENSVKMLRAFFREMIRGFYQQKTGEFPFAAFAETVFKEVL RRGEADEVPLLMCDMVSQMPLITLTAVITTRENAFSTKYNTPLPTGDYPMISTEAKIA KEKFKAEYVAFAENCIEFLISSRKLFQTDGTYLASFYLLLFLESNRDVYPGIEMAVVT EAEMTTCVRVFGECGLSEKMFLMLCHEGTNQLSPRSLIDLISALTHRAVTHQSQTSTV PLISFSDPFELIDSFLQMTIYPESDLPRLDPPICQRNLYWIAWNIIILWIAGGSEICG KFAKIYESYTVLRYMIHCIMTRKFEFPRDFEGKSAGIMAEEEAAMESSEAIVLNMYRK KLDRGMPVEAMAFLERSAFRAPSLMDEIRHLSDRYQLASRFAKCQSPPLLSQLIQTVG AQNSLFAIREMLSVDASTAKRLTSECIFHSLIYYFDSHRLRDLDQNSSHVVKAVRGKK QCNLIQNNYFQLILQAEKNLKSAESVDEDFLLQSFVSSLASPQFSIRSAAVNTFSKLF PPSDEDKPFDLGKLSLVPRFDSRKSTYLETMASAILVETDAHLANSYLHFLTKNSMEN EDDHRIARAICQILSTDCQQLHTSLCDYFVQYVDMCSEIHKIKESTPIDDSLCCLDIG TSRIALSREVPVAVVKLLSKFDTKNMEKGGKSTPFEMLVQFWLSPGRIPKMVDRQTGE TRQFLNLPMRKEMLKSAEQRVVDAALEDLSETDAQEFVLVSQMSRETAEKVFRKAENM KIQSLDRQTLSNMYLLLRGYRMTGVKSGELLLNRIKEEMDRLDSIVLKEEPMEIQMPE NETKPEGFLRLAMLCTAEKSLVFTSGTMEKMEANDISNWLKTHCAALVSAKSKSAPIF RVPSAFIQSAMNDEKCSLSCLSHIEANLKFFLSHESAFQTLSVIIDSAANKFDFVRKR LETFSAKILKSVTPPPSVIGILQKHAANSQKSSQTTPKNHKIAASTFSEFAGALKKVS SDQKDEKRLIGEFMTTFVKDKGEVVDSEDVYVFIRSLLKVYAGENSETVEKCLSNRWS PQLRAIVCSVVLEKYSPGICAAFVFRLLSAYCEKYPVASFNELFMIRKGEEGLVLNTN AINVCVFYFCDVATDTDDYDTQIVSLISALETQGGTRIGYLFARALLQTCCANASPIR RRTAQRLLELLSDSLLYLQYKVGMVSSLRVLSNIESRDSCIRRCEQIVDRIVEMALDP SAQLSEDICEEEREKDPKELEKEKEAAAAANESKFKRGFDKRGGGGPLAKKGRFITPK DLPGPLGATTTKAADDGEDSNSNDEPIVVAKREWIETSHAITRFNSLKFPVLANYVSR LSAMSRKDLKEEKRINKVELVLQSVVTLCQYMKPDEMNSVDTALSNCLEFFEKHLEEG GYGVKEQTAFAELTIKACAEYLNHSFLEARSFLRDNRTLVERVCKRCHDRYNVEMVLD NC" assembly_gap 599788..599850 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 601007..601016 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 603107..604152 /estimated_length=1046 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 611079..611583 /estimated_length=505 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 614746..615281 /estimated_length=536 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(616061..616102,616669..616924,618504..618729, 623829..623924,627252..627552,628594..628779) /gene="Cbr-csn-2" /locus_tag="CBG_22097" /standard_name="CBG22097" /product="Protein CBR-CSN-2" /note="C. briggsae CBR-CSN-2 protein; contains similarity to Pfam domain PF01399 PCI domain contains similarity to Interpro domain IPR000717 (Proteasome component (PCI) domain)" /note="Predicted" /db_xref="GOA:A8Y1I7" /db_xref="InterPro:IPR000717" /db_xref="InterPro:IPR011990" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR019734" /db_xref="InterPro:IPR036390" /db_xref="InterPro:IPR037750" /db_xref="UniProtKB/TrEMBL:A8Y1I7" /protein_id="CAP38756.2" /translation="MGDDYMDDDEDYGFEYEDDSGSEPDVDMENQYYTAKGYRSDGKL DEAIKAFEKVLELEGDKGEWGFKALKQMIKITFGQNRLEKMLDYYRELLTYIKTAVTK NYSEKSINAILDYISTSRQMDLLQHFYETTLDALKDAKNERLWFKTNTKLGKLFFDLH EFGKLEKIVKQLKFSTKMETFLCEIIISKLTENREDSGYVGAHEGQLDSIMADPFIRE HTEELMNNIRTQVLLRLIRPYTNVRISYLSKKLKVSEGEVIDLLVGAILDDGLEAKIN EESGMIEMPKNKKKMTVSTLVVPNAGDSAAVKSDSKEGTSSSDGTSSSATQPILSGPP PTSCNQELSLEGLRLWADRIDSIQSSIAVYKKVM" assembly_gap 617660..617681 /estimated_length=22 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(619858..620400) /gene="CBG22098" /locus_tag="CBG_22098" /standard_name="CBG22098" /product="Protein CBG22098" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1I8" /protein_id="CAP38757.1" /translation="MSSITSISNEISTSCLPRLLTKAECRMKQLESIKKEISLGLKFQ NLLAMQKIWTTMPGDMQREVLAAQREGRAYVAPDDNEPAAKRARIEESDYSNVAFLPP PVEELQEIQQDDLDMWLNNGFDPEPADDVYNPEFHFAAEQIAQPDQPDLPPMLDFDDF YYREHGMSEQDYNDIHGRFF" CDS complement(join(620776..620963,621163..621450, 622124..622287,622542..622627,623258..623351, 623665..623780)) /gene="CBG22099" /locus_tag="CBG_22099" /standard_name="CBG22099" /product="Protein CBG22099" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1I9" /protein_id="CAP38758.1" /translation="MSFQEHHNSNNNIDMNMMVDASSRAVAGKGKKKKTAHFNRKNGN FESKISISDPKTTNFGPKITIFTPKNKTRTSGVQGDFHRVRPAHTSLNHYGMCVSNHD GHLINDEECPFYNSTPTPTHPHRLSLSYFRPKTKKHPEENQMELFLLPLPLRLLTKAE YRTKKLESIKKEISLGLKFQNLLAMHKIWTTMPGDMQRGILAAQREGRAYVAPEDNEP AAKRARIEESDYSKVTFLPPPVEELQEIQQDALFSFDFPIFRYQFVLFCMGTSGQRDV QTQMDGIRAGQQGPHCPQLSRHLVERSLIQRTRPI" assembly_gap 623579..623588 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(630070..630285,631474..631653,632564..632617) /gene="CBG25182" /locus_tag="CBG_25182" /standard_name="CBG25182" /product="Protein CBG25182" /note="contains similarity to Pfam domain PF09340 Histone acetyltransferase subunit NuA4 contains similarity to Interpro domain IPR015418 (Histone H4 acetyltransferase, NuA4 complex, Eaf6)" /note="Predicted" /db_xref="GOA:B6IM07" /db_xref="InterPro:IPR015418" /db_xref="UniProtKB/TrEMBL:B6IM07" /protein_id="CAS00937.1" /translation="MAKEKDPAELKKELEAWIQKKQSIVEDLDALETQIYTFEGNYLE DTAEYGNVVKGWGNFANAPPPSKTNRFENKLKKRSVREEERLFSKSSTTSPYAKKQNQ STSNGSGESTSGADNGYQREESDANDDEDNGSISSRDSKVPIKRRKY" CDS join(632993..633157,634447..635037,635924..636225, 636732..637115,637745..638162,639231..639398, 640275..640628,641890..642057,642209..642346) /gene="Cbr-vps-34" /locus_tag="CBG_22101" /standard_name="CBG22101" /product="Protein CBR-VPS-34" /note="C. briggsae CBR-VPS-34 protein; contains similarity to Pfam domains PF00454 (Phosphatidylinositol 3- and 4-kinase) , PF00613 (Phosphoinositide 3-kinase family, accessory domain (PIK domain)) , PF00792 (Phosphoinositide 3-kinase C2) contains similarity to Interpro domains IPR001263 (Phosphoinositide 3-kinase, accessory (PIK) domain), IPR002420 (Phosphoinositide 3-kinase, C2), IPR008290 (Phosphatidylinositol 3-kinase, Vps34 type), IPR000403 (Phosphatidylinositol 3-/4-kinase, catalytic domain), IPR015433 (Phosphatidylinositol Kinase), IPR018936 (Phosphatidylinositol 3/4-kinase, conserved site)" /note="Predicted" /db_xref="GOA:A8Y1J0" /db_xref="InterPro:IPR000403" /db_xref="InterPro:IPR001263" /db_xref="InterPro:IPR002420" /db_xref="InterPro:IPR008290" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR015433" /db_xref="InterPro:IPR016024" /db_xref="InterPro:IPR018936" /db_xref="InterPro:IPR035892" /db_xref="InterPro:IPR036940" /db_xref="InterPro:IPR042236" /db_xref="UniProtKB/TrEMBL:A8Y1J0" /protein_id="CAP38759.1" /translation="MIPGMRATPPTESFSFVYSCDLQTNVQIKVAEFEGIFRDVINPV RRLSQVFAEITVYCNNQQIGYPVCTSFSTPPDSSQLARQKLIQRWNEWLTLPIRYADL SRDSFLHITIWEHDDDAEAANSTFPRRLVAQSRISMFSKRGILKSGVIDVQMTISTEP DPFTKQAETWKFSDTWGEEIDLLIKQVNRQSRGLIEDVQWLDPFVARRIELIRAKYKH MSPERHIFLVLEMAAIRLGPTFYKVVYYEDESKNMRISASAVTSGTSCNRYCLSDPEL LLDSLAEVKHSAMTRRIRDSGDERHRQVKPNKQAKDRLEMIVNLPSSQVLTREQRDLV WKFRHYLRQFPKALNKYLRSVNWAQPQEVKMALALMNDWELIEAEDALELLSSAFTHP AVRAYSVSRLLEAASPEQVLLYLPQLVQALKYEHNQQKMDEQQQKEEGSEEIQKALTP SEDPASGEAGTTKKEKRKAPPSGDLATFLIDYALASPKVSNYLYWHLKTEIESTKTTE EHLSNMYQRIQDRLKEALEKRHDTRDQVDSLQKQQIFVEDLIVLMNEAKARGGRLNDG KSAEFRTMLSRAKHMLDLKGVHLPLDPSYRLISVIPDTAGFFKSEMMPAKISFKVQPV TGKVDKNFLEEYTVIFKTGDDLRQDQLIQQMVRLIDIILKKEQLDLKLTPYLVLATGV GQGFVQCIKSKPLRAIQEQYKAHKLDCIREAMKELRPGDGPFGIEPNVIDNYVRSLAG YSVIMYILGLGDRHLDNLLLCENGKLFHVDFGFILGRDPKPMPPPMKLTSEMVQVMGG AKSQQFLEFVQHVDSAYRILRRHSNVLLNLFSLMLDAGIPDIASEPDKAIFKIEQRLR LDLSDEAATKHIFTQIESSLNAKMAMISDIIHAYKQNLM" CDS join(642780..642824,642871..642977,643026..643104, 643203..643403,644679..644818,645188..645533, 646916..647141,649010..649269) /gene="Cbr-tag-146" /locus_tag="CBG_22102" /standard_name="CBG22102" /product="Protein CBR-TAG-146" /note="C. briggsae CBR-TAG-146 protein; contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:A8Y1J1" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR036236" /db_xref="UniProtKB/TrEMBL:A8Y1J1" /protein_id="CAP38760.1" /translation="MKIEDGIEDELQMLQDPEPIFEEWAVDEALESNMITEENIKNIK PFFQTKRKRTNRPATVTACQVCGLELKYPSRMKEHMRTHTGEKPFSCDQCGKRFSQNT PYMHHYRAQHLGDFPFTCGFGCGRRFVSNARKNAHELRHRGEKRQGPPRPHLKPDKKM ICPQLESQSILIDNGGLAMSASSIFVAPPDLSTGYDTPSTSTATSRSLHYAPQRSKSS LNFPLEDDGLPIDEEELTEKELESNARIDDVISTVLQKVLNVPHPHDETQTVETDKVP KKRAYAKTRLATIAQCGVCGLYLKHPSKIAEHIRTHTGEKPYQCGECGLMLSKASSLK THIKRMHTAERTVQCTWCNATFVNDSVRKEHEMAVHAGVKRYTCIVKGCNAVFARRCY MMRHRRNVHPELFTPIFDNEEVNAEEEIDPVLGGPKYDYVYEEADPPMVVLTMEEIKM MNEFDEEEFVEQGGAIG" assembly_gap 649695..650780 /estimated_length=1086 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(652071..652400,652772..652969,653023..653211, 653261..653649,654152..654500,655613..655923, 657040..657247,657331..657408) /gene="CBG22103" /locus_tag="CBG_22103" /standard_name="CBG22103" /product="Protein CBG22103" /note="contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1J2" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR036236" /db_xref="UniProtKB/TrEMBL:A8Y1J2" /protein_id="CAP38761.1" /translation="MEQSCSKAPPPPPPSLARFFHPRIPFPRVLQPKGTFTPMEIPNS YLQYCVTSSTQPTILRRGNGAGTSSDARSRPDTVYRRNDPANRPYVMKKRPQAQVYHC VQCNKNIKYPSKITEHIRKHTGEKAHVCRVCDRSFSQAHTLKAHMLQHSNETPYKCSY CPVEFADLVDKDEHEESHLHPEALSALSNPRILQLELRRQEAPPILEVEDVEEEEDVD ADEEGTQMCQIYECPEMCGFQSFDEPEVVAHIQIAHQIAHHHPYETVCWTEEQGGGVE TDRPDQKMAELVHEEYTEYFPERFVPQVASESIIHESTSSSATVACTSNWTRGSRMVY SNQEEERMSNAKVMKEEEVEEEHMAYDQLIMQHHLHTDVLDDVAVEGVEEEDGNDVVV EEEDVEEDEPEHVRVIVNPNPPKRGTKSLRDHHEASQAMKEVIMEASTLVMAAPRPQK PIDLYSQNSLDAAAKKRKRAKKSMNVDWIIDAVAKGVDVSEASPHIRKKPTLHKCEYC GRVDKYPSKIRAHMRTHTGEKPFKCEICGMEFSQKTPLRLHLRRHLDQKPYECDVDGC RERFVSGAILKLHIEKKHLMKKKFVCHRGCGRVFSSSYNMRHHEKKCLVPMETYHQQH AIGDESMNGEYIDEDDEEELLEEDGGGRVYMDHLMDPSIVEQIPIAEQHFVEEPVFLH Q" assembly_gap 655457..655466 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(659326..659379,659427..659552,659603..659946, 660242..660397,660606..660786) /gene="Cbr-madf-6" /locus_tag="CBG_22104" /standard_name="CBG22104" /product="Protein CBR-MADF-6" /note="C. briggsae CBR-MADF-6 protein; contains similarity to Pfam domain PF10545 Alcohol dehydrogenase transcription factor Myb/SANT-like contains similarity to Interpro domain IPR006578 (MADF domain)" /note="Predicted" /db_xref="InterPro:IPR006578" /db_xref="UniProtKB/TrEMBL:A8Y1J3" /protein_id="CAP38762.1" /translation="MESETDEKPCKESQLIEKGLPLDWLVRAHSARNMETLVYLYDQR QKWINEDQKLILTILQDYENSGAPPIPENEPPLLRRRRGKVATSPECPKIFIFTCQLL DLIKEEPTIWDKVNCTNFGYHQPMRQAWCSISLKLGGWGAMPHVQMLKQLYRRRRDQY NIDHLRLGKPFVYSEKLSFLKNILETAKSDTWSSEISLADHIEACEPKIDYEEELKEA PEFVQRIISEISSRIDQVSAQHSPETLAHYLTKCCNQTVANRERLAVSELFEEPVEQK VPEESKFENT" assembly_gap 662783..663444 /estimated_length=662 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(679112..679565,680229..680749,681408..681701) /gene="Cbr-hmbx-1" /locus_tag="CBG_22107" /standard_name="CBG22107" /product="Protein CBR-HMBX-1" /note="C. briggsae CBR-HMBX-1 protein; contains similarity to Pfam domain PF00046 Homeobox domain contains similarity to Interpro domain IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:A8Y1J4" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR006899" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR010982" /db_xref="InterPro:IPR040363" /db_xref="UniProtKB/TrEMBL:A8Y1J4" /protein_id="CAP38763.1" /translation="MIFTVEQLELIRKLRESGISSDQVVQAFEEPKVLTPQNNNKLYS NPLLIQQLTSTVPTLHIRTVPSPINMVVKSEVSSSSTSPAPVFEHPICSNAPRPIRSQ RTPMKEITTLDDPSELEEFMQNGEEMCIQDMKTFITQYSLRQTTVAHMTGVSQPYISK LLNGNHRELSLRCRKNIYCWYLNCRRHPEKLTAFISDPSTRLETNGDGELIPQRRERY VFRPILIKMLENFFNQTPFPDLPRRVEIATACNHVLQLDKKGVGLMPKEVVSPQVVSN WFANKRKELRRRSAEASAASTSSASSTVSSGSVDVASISSMSPTSRDDENSSRNMTPE VEPSSPLALIKEENEEPATTVTPPTSLPLPMIPTMPSLIPNPTVTSPLELLAIAQQLG LQIPMPQFPGAFLPFPMTGFYSNPAILKSE" CDS join(684517..684566,684990..685092,685150..685276, 685524..>685642) /gene="CBG22108" /locus_tag="CBG_22108" /standard_name="CBG22108" /product="Protein CBG22108" /note="Predicted" /db_xref="GOA:A8Y1J5" /db_xref="UniProtKB/TrEMBL:A8Y1J5" /protein_id="CAP38764.1" /translation="MALLKVRDECTKLVGYQFLNSHICLCITLIQLLVCCWAVAQHIN SYMTHSKILKCDFLEGSLPLEAVDAVIFDIRLFHYLWGIRGCVAEYLDGGFGRLLWCV SHCLTLFFSIPVTFLHHPKPCLFWPLLFQVS" assembly_gap 687146..687155 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(692470..692661,692949..693362,695071..695375, 695421..695508,695559..695682,695732..695817, 697136..697518,698407..698638,698702..698773, 698823..698906,698953..699123) /gene="CBG22109" /locus_tag="CBG_22109" /standard_name="CBG22109" /product="Protein CBG22109" /note="contains similarity to Pfam domain PF07986 Tubulin binding cofactor C contains similarity to Interpro domains IPR000532 (Glucagon/GIP/secretin/VIP), IPR006599 (CARP motif), IPR012945 (Tubulin binding cofactor C)" /note="Predicted" /db_xref="GOA:B0K0B4" /db_xref="InterPro:IPR006599" /db_xref="InterPro:IPR012945" /db_xref="InterPro:IPR016098" /db_xref="InterPro:IPR017901" /db_xref="InterPro:IPR039589" /db_xref="UniProtKB/TrEMBL:B0K0B4" /protein_id="CAP38765.4" /translation="MWNSVVRVKFGQRLENANNRSRRDKPRVPKEEIDDAVLHYVPGT KPVEQNHVQNHVQSQSIEQKIILPPPNPNHHHHRYSSPPHQNRRRTSSEATHQTPSRK LLPAQPPSEYRRHLKFPQRPHHNHHRGPRTYYSDDDDGDSEGEDDDDDLPTPPPPIFA TRLTSDSWENQRLRPGRRQLPETPDLPKHGELPQLFSISHTNNLSHFLQFFLLQNNNR TPSPFLLYALSSPWRPQLTEQQKEEKEEKEFQQKIVMTNIYVWVRTSRSLQFFYPTVD VEKDDPFSVYYEIAMDVIGLMKECDRISSEEFETMGKGRISKVYTEAIFQNAVEHGNI NARLKLLVFSLLFAAIQQRTPDMAKSNRNDIVLTRISKYFGPIFKLLFQMDVGKRLQD RDIVQAIGSGQGYKFLDVLFEGTIKHKHGNSNHHGVRPLSLIVPLILDKVNSISLPFL CNEIRRHLIKDPYHIDEFASEKSPQIFSTVRRTTLAHNSRRVVHLHYINRIEVLRKDE FANVHLRICNDKPKASFVFVPLRCETVFLDSLFYTQWILLGAVRGIVIVKNCQNTRIS VSCEQLIILDSKNLEIHFMSPKKPLISSSVGITLAPFNTIYEGQEEFLEENGHYFNNN LVFKEPIMFSSGSWTMDTSKFVCQSTPLDAMDQQFETLLNSLPEEYRIAHYRNTIEAQ KMMAAEPEKCRVSDVATNFDLLYLKSKIEKKEEE" tRNA 699532..699603 /gene="CBG28639" /locus_tag="CBG_28639" /standard_name="CBG28639" /product="RNA transcript CBG28639" /note="C. briggsae predicted tRNA" CDS join(701953..702009,704216..704287,704380..704434, 704486..704562) /gene="CBG22111" /locus_tag="CBG_22111" /standard_name="CBG22111" /product="Protein CBG22111" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1J6" /protein_id="CAP38766.2" /translation="MFQDSEIPRFQDSRIPGFQNSLIWKADLSGGSNGDRNVSMEFKN APSAALSTFSQILKIGTNGFNGFSGGCRWTSAGNFRELDCFL" assembly_gap 703443..703724 /estimated_length=282 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(703730..704032,704122..704142)) /gene="CBG22112" /locus_tag="CBG_22112" /standard_name="CBG22112" /product="Protein CBG22112" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1J7" /protein_id="CAP38767.1" /translation="MNNFEKLNLKISKSQNLRISESRNLRISESQNLRISESQNLRIS ESQNLRISESQNLKISESRNFRISESQNLRISESQNLRISESQNLRISESQDLRITES QNPRI" CDS join(707829..707872,708637..709051,710866..710990, 711183..711405) /gene="CBG22113" /locus_tag="CBG_22113" /standard_name="CBG22113" /product="Protein CBG22113" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1J8" /protein_id="CAP38768.2" /translation="MAATQERELTVKEEKRLAKEQDRNYVDYRKQEILHLIKPKTKAF NLKKFDDEFPKPKKKDKIDMKFGEEMHKYLTLRPDARFATWPGKPAIKKKKPKAAAPV KTGLMAKMATAAGVAKPQKEATPEPAKKGLSRIIQKLSPKFSFKKPSSTTTWTAKTEA VRAKFFHNNAERARFFPFGPTAQLMTGQMLVFGNKCLVIGNTLQSIIESTADRKGLCK ERVDKGHKPMVKWSKKTHTIEYVMDSVPLEKTAICEGKFQVILKENAKKE" assembly_gap 708163..708174 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(711511..711642,711751..712090, 712948..713086,713252..713570,714444..714765, 718562..718882,719272..720047,720076..720801, 720851..721176,721222..721429,721742..721852)) /gene="Cbr-pqn-59.1" /locus_tag="CBG_22115" /standard_name="CBG22115" /product="Protein CBR-PQN-59.1" /note="C. briggsae CBR-PQN-59.1 protein; contains similarity to Pfam domains PF05195 (Aminopeptidase P, N-terminal domain) , PF00557 (Metallopeptidase family M24) contains similarity to Interpro domains IPR007865 (Aminopeptidase P N-terminal domain), IPR000994 (Peptidase M24, structural domain), IPR023827 (Peptidase S8, subtilisin, Asp-active site), IPR002347 (Glucose/ribitol dehydrogenase)" /note="Predicted" /db_xref="GOA:A8Y1K0" /db_xref="InterPro:IPR000994" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR007865" /db_xref="InterPro:IPR009060" /db_xref="InterPro:IPR029149" /db_xref="InterPro:IPR036005" /db_xref="InterPro:IPR036291" /db_xref="UniProtKB/TrEMBL:A8Y1K0" /protein_id="CAP38770.2" /translation="MGIKSDKKATSDQARLQRLTLDGVSGTEEDMQLMIKTITETTGC TSAQAEIALLDRDMVLYSAIDYILEAGDKLDSWTEQKGPKKEKKKSDEGSFNSRNFQG RGGRGGSTGFVDRGGRGRSSGATPRESRDTRDNNRENREPREFREPREPRGDYKEGGR GGDFKEGGSSRPSRGGFERPYVGRGRGGGSRGGYSRAVAPSSTLDPDAFTADLEDNST KVDTNVTEVQPPVEESVAATVPTSSAPAPISFAAVAAAAHRKEALRKQQAQNPQPAPP PRRSLSPQPPLPSQAAPEESPVKEEQEPAQFSDEPETSQQQDEGYFQDEQAPAVEEQT PNVSTHHDENVQSSPDQANQAWTNQLKSSLGIGIHDAQEAVSPTPSAAPVQTLPDPGV EFVGTTAPTNLHDYSFGFVDAPPSPQLPQPSEPSAASISTNNENLFNSPRMIPKQVEV SLSNWNFPERSLPNGDYNLKSSSPPLGYGQSNRGLSYDTSSSSYPPTDRLSSSNKFNN PGQLPSQQSSQQPQQQVQQPTQQQNTPPAQQQQGHPQHPQQHMLFAPQMPYGYMNSYM NMYNPMGGVRDDQYAALMQYGMGVDLSNLSTILPQSASQTLTSNAPQVQSGQQRETHG LMDFNKFGSQSGRDQQPQQPSNVGPPPGFQANSYMQQPNLSSLFMQQPYPAAPHTFGF MNMMPNVGNSAGGGRQMYGQDDERKSYDKMAGAKNGSIIYITSCMGYTPSIDMGLYSV ASNSVLSLTKAVAQSAAKKGVRVNSVVSGMVEGDGSGAVWDQTNGEEARQIKQHLEAM IPLGRLGRPADVASYVEFLASTRSRYLNGITTPDCYYVIQCGLQESSKPTNLLFANRR TDYETLWEGPLPSETEWEKTANFSELSPTNRLIQTLEKVVDKGTAVFSNTASDDDFLE NFLKTKANSLSSVDHFMSSDLTTLKTLPTATPTRAASKIGKLVRCQKSQNYRFLIQIE RLRVIKSDNEMDAMRDVCNLGAQTMSSMISGAKNVHNENAICGLLEFEGRRRGSEMQA YPPVIAGGVRANTIHYLDANADLSPTETVLVDAGCDLNGYVSDITRCFPISGHWSDAQ LSLYEALLYVHEQLLTYAHNMEKVRLSALFRRMNELLAASFSELGLIKSTDPKEMIHL AEKLCPHHVSHYLGMDVHDCATVSRDVDLPANVSFTIEPGCYVPMDWPVKEFRGIGYR IEDDVATSSSGGIELLTAAVPRDPLEIQRLMGTAE" assembly_gap 716804..717531 /estimated_length=728 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 719258..719267 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(722841..722984,723040..723175,723244..723503, 723594..723729,723994..724295,724339..724751, 724798..725055,725102..725206,726543..726600) /gene="Cbr-taf-4.1" /locus_tag="CBG_22116" /standard_name="CBG22116" /product="Protein CBR-TAF-4.1" /note="C. briggsae CBR-TAF-4.1 protein; contains similarity to Pfam domains PF05236 (Transcription initiation factor TFIID component TAF4 family) , PF07531 (NHR1 homology to TAF) contains similarity to Interpro domains IPR007900 (Transcription initiation factor TFIID component TAF4), IPR003894 (TAFH/NHR1)" /note="Predicted" /db_xref="GOA:A8Y1K1" /db_xref="InterPro:IPR003894" /db_xref="InterPro:IPR007900" /db_xref="InterPro:IPR037249" /db_xref="UniProtKB/TrEMBL:A8Y1K1" /protein_id="CAP38771.2" /translation="MSLPRFRLVQGKALGERSGPPPPLQQQPPPPQQIHQQQQPVNNM PPESMPQVKVEVDLMQDIPSQQEPQQHVMHQIKQEDPISPPRNQMMGASQPPPQMMQQ RGPTPQQMSHFVQQPQHPQIMNQPPIPPQNSANQPQNPNSEDKNVQKCVRFLKTLISL SQNEDPEMPDKALRVSNLIQGVIYMETTAEQFTRDLQEVLRSQAQPHLLPFLQNTLPA LRNAVRNGTASVEGVNPPPGYVFNNGRHPQNAPPTAQAPPQQQQQPQHMTPQAPPHDM RGPPMNPPMNQGVPISQAGPQGGPGGPGPQQMMNRMNVDNGTPQGRPNFQQRPPGPPL QSTPVVRTISGGPIGHPQGPGPHQQPPHPQMPPSQPPRTPQSVSSQGPQPMEVDGSPA PPPPRRQYPEGSLKSAILKHDEILNRITKRMMAPCQVEEDALIAISDAVESHLREMIA MMAGFAEHRVESQRIPENYVPVDDVKRQLKFLEELDRQEEEMRENREKDALIRASKNK NIGKETIEKAKEMQRQDAEAKRNRDANAAAIAALSSSRPTKKWEGAASTSTAPRPRTV RVTARDLQMLVNQDNRFTGTFIREKLSYGGPTIDPTI" assembly_gap 726055..726172 /estimated_length=118 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(727787..727799,728391..728510,729140..729285) /gene="CBG25183" /locus_tag="CBG_25183" /standard_name="CBG25183" /product="Protein CBG25183" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IM08" /protein_id="CAS00938.1" /translation="MIRIPPNGPTKSSATGAWSSSGARDTHCYWEILADVLRVIDAPP GTRDEVRDTVLQKNVQVAARIAQEADRIDRNPRLSPAPNDRTPSNPAD" CDS complement(join(730478..730618,730682..730746, 731514..732389,733238..734853,735638..735759, 735790..736094,736268..736583)) /gene="CBG22118" /locus_tag="CBG_22118" /standard_name="CBG22118" /product="Protein CBG22118" /note="contains similarity to Pfam domain PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) contains similarity to Interpro domain IPR000682 (Protein-L-isoaspartate(D-aspartate) O-methyltransferase)" /note="Predicted" /db_xref="GOA:A8Y1K2" /db_xref="InterPro:IPR000682" /db_xref="InterPro:IPR029063" /db_xref="UniProtKB/TrEMBL:A8Y1K2" /protein_id="CAP38772.2" /translation="MDDDVSLAIDKEIDRMVEQGIIQHRTVERAMRLVHRREFVPGHQ RRQILQHPFGVHHRGGRVLIHLSHIDIYCKVAEYLRIEKGMKVLNVGSGTGFFSTVLG VLLGDQGTNHGLEVHPTLIEFAEKRVHKWVQKTSSTAVGFSRPVFKPGDFNDPELYRK HLEMYDRIYISFVNHDLDCLRRALCMLKINGILIAPMNGWVRVFGKCLCRYTRTTATN ANCEFLERMSFASGFLMPDGKRPPTPQFDRIAPLSILCRQALRTKVRSEIYSHLVMTR INASLLVPIGGVPDKSDDEDEGRPLPTLDAVMNEYLHRDEGPSTSGPPPQVIPPAPTP TRRIRELTTTMNSENSDAELQHQVWAELLTNRDRAVRIRAANALGALHGAHLPDALRE AIEGVESDENRDQRCVRYIEQGRWRHNLGAGVARENRSQCLANALIISEAIRESKELF PKRLVEYGYFHMNRFNKLRLEATDSRKQVEFAEPPDDPIDVRIGEMWDRLIANGKSID LNSPWQFGFITQLKFDQTSLGSLARMIEEFFVIARNFQNLMGLEEAPAPELTVTELSS RVIEQFSQICQLWEMYLKLLVIEPQPRGRFGVQQRDDLRGRVHRIRIELFERCPAARP VTIQEVPVRELEIQQQMERDNQAMNEVREMIEELFRPDNGYPSRRMSEPSGSEPNGSA TGSFEHYLLEPTVPSSNVFNAANSTNGTQGSSASQRSEDFVNESRPPESSGSSSSIEE SGEDENLFEPFQFMVPIGIRPTQENVDEVRRRVREAREAIQRQLNQETSEDETSSPSE TESEESDDDDRLDIFNPMEMAFPEGPTPPRIPANERSRGRPEGSFPPQAPLETQDLEE VLGPHDPRRIYFIQLDQNRYHPLAEAITEQHEYLRALRSHNADPEDLERRRQAYITWR RAQRQNGRTVRRLMNYRFLNQDERLILQEMDRLIPNLQETDERIRMWQDTFEPQLVNR RRNRIGRDIAEMDANQLNRRVDFEAIQRSPPDPLVLMDIDFKPPLRVPRVSGDLSDDE MDQEKQELEHRFLAYEAVRRLEDQRSESETVSESEDSDSSGPRGSRFFGPRIRSSTNR RQERRRKSAEQKKRERHLRERNSTLLVAHNSYSNRIRNLPIPECVRRFLADLTEKIDF " CDS complement(join(739004..739163,739211..739284, 739717..740031,740182..740388,740539..740650, 741653..741720)) /gene="CBG22119" /locus_tag="CBG_22119" /standard_name="CBG22119" /product="Protein CBG22119" /note="Predicted" /db_xref="InterPro:IPR042317" /db_xref="UniProtKB/TrEMBL:A8Y1K3" /protein_id="CAP38773.2" /translation="MTWPILTVRLKQKVVDLLDYESRCNLRISSKDDRDVVDSTKFVP EKFKITETPSDLSEGKSIIRLEIDSFTIWLTGKDDLTKIDRGFNREVDETLSEIKQEN RVEVFQKLLLRFSNKGLIKADTVEMEGIRFMPPEDLNFKCSSLKIVAVTTDYSVEWLK RMAPKLEKFENLDVACWGDDTELMTIHSLLEVSKSLKLEHESGITDEQLQEIEATNLK LFSERITVDGVRKRLEPISFFPNNLRMKKITLRAEDENGYFGKILGGFENIHGIREPW KIELLSFGGRMRIYCKIWKKSERPCILYPFYFGRE" CDS join(745573..745672,745772..745852,745903..746055, 746411..746503,746708..746832,747929..748132, 748333..748501,748657..748825,749583..750135, 750896..751134,751618..751747) /gene="CBG22120" /locus_tag="CBG_22120" /standard_name="CBG22120" /product="Protein CBG22120" /note="contains similarity to Pfam domain PF02338 OTU-like cysteine protease contains similarity to Interpro domain IPR003323 (Ovarian tumour, otubain)" /note="Predicted" /db_xref="GOA:A8Y1K4" /db_xref="InterPro:IPR003323" /db_xref="UniProtKB/TrEMBL:A8Y1K4" /protein_id="CAP38774.2" /translation="MYPDGLTESEKLKVKELCTMVNISDEDALKLLKENDWDIQISSR RVSKQEDKTLVPGTSKEDVDLERLSSRLRVHGLAFYLPDFGGFPNEFRTFLEKDLIET QTQKRLEASRHLNWWHQFGQKLYPLSTTGDGNCLLHAASLGMWGVHDRQLSLRETLYE LLTNGARREAIRRRWKWVEHHLNQSNDLALTLSENEWQLEWNVVLGLSSPLPRKQDDN GSNSTDQIYESLEAIHVFALAHVLKRPIVVVSDTILRNAKGEELSPVAFGGIYLPLEC RPSQCHRSPLVLCYDSAHFSPLVLMRTETNNKQIIPIIDVNRNLLPVHFAVDPGENFD WTRLDNNDFQQSDMSQIDKLALISQYMDIIRLDIRRGSIRSTRRVRSAHAQLTENGNN NGHAHNQNHRNPLTLPRDTSTYGDDLQNQQIQNSSSAKGMTLASSGIAQGRHEKWRLI NEIRTHVLRTFRISTTSRSKEKSIDTDDCIARMNSTCVLASELLPTHHQYMDKIINEY MKSAKQRFQQNQRTAQADSRKRISRSFSASSLMLTCIGCDSEFKPASQVTNIMCDQCF AWQKMSVLKSTCDQFMSGPPCKSSTLPSFGSEGPTPPSTSSEKENIVEVLSVVSKDGT KAKTSMRAVEDENGIVHYYMDDDVAPETTDDCSAELIDKIDQNLARI" CDS complement(join(753591..753665,753712..753772, 754386..754975)) /gene="CBG22121" /locus_tag="CBG_22121" /standard_name="CBG22121" /product="Protein CBG22121" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1K5" /protein_id="CAP38775.1" /translation="MCNRENQCFPLANTMHGSEEAIIAFHNHLLDLFGTTVTFLYVGS DYDVIRQLRNVTACEIGMEYLFTQMRTLENFLTASPVFKFIHITARTTEEQFNPESKL YQAESIQIDQRDHTFPAILHRYQGRQAVLRCTHCNLHHLMDFVKKWKSGEGFQNLEYL KIKIICNGVPQLQIFNEIGARYIDATKQPPAHSVPRVYIECNDDEQPNTEPIISHAYR GRSVWSLGQNGGGVFENGGTVCD" CDS join(754928..754987,756433..756766,757054..757234, 758095..758189,758272..758438,758625..758657) /gene="CBG22122" /locus_tag="CBG_22122" /standard_name="CBG22122" /product="Protein CBG22122" /note="Predicted" /db_xref="InterPro:IPR042317" /db_xref="UniProtKB/TrEMBL:A8Y1K6" /protein_id="CAP38776.2" /translation="MHCICQGEALILSIAHSEILLCFAPLETWTLKCKNIRIQSWKPT PNLVPWVQKTLDNSRDLKVLDIKGHGNFIEIGESVPGLTIFESLKLSDDTNLTDEDLE KIEAMDLFLCSLRITVRAVKKRLEQFLKYARKSIRPRSTSIWQVVSSLDGYTVRKLKD FVQSLIGKRQFGNMVHDLFMETVARIPFEMHACECTGCSLNSVVKAKKDHNENVKVTR KRLDIGEFIATFVGTLCGPLTANGLKAGTINVRYSYTATNKNSIKQVTKLLKSKEYVR YLRGLFWSQWIST" CDS 761502..761804 /gene="CBG22125" /locus_tag="CBG_22125" /standard_name="CBG22125" /product="Protein CBG22125" /note="Predicted" /db_xref="InterPro:IPR001810" /db_xref="UniProtKB/TrEMBL:A8Y1K8" /protein_id="CAP38778.2" /translation="MKIFKYPHLVLIEILHSMNYSEIFMMSFISKNMKKLIKSYQIAR FEKIDSIRYECNPRGQPLVYIYYKSSSEKIVKIDKLDKNINDYFQLNISGKMIDFR" CDS complement(join(765082..765206,765691..765847, 765922..766226,767844..767964,768012..768265, 768603..768867,769678..769873,769922..770180, 771322..771409)) /gene="CBG22126" /locus_tag="CBG_22126" /standard_name="CBG22126" /product="Protein CBG22126" /note="contains similarity to Pfam domains PF03222 (Tryptophan/tyrosine permease family) , PF01490 (Transmembrane amino acid transporter protein) contains similarity to Interpro domains IPR013057 (Amino acid transporter, transmembrane), IPR018227 (Tryptophan/tyrosine permease)" /note="Predicted" /db_xref="GOA:A8Y1K9" /db_xref="InterPro:IPR013057" /db_xref="UniProtKB/TrEMBL:A8Y1K9" /protein_id="CAP38779.2" /translation="MKKREKEDEEGLLMRKTYTAGGSSSVLIGDHDSDSEEFPPTSSS HHHHHATSPDPTFSPWPHVFNLANCIIGVSVLAMPYVFQQCGILLAAIMIALCAVLTK LTCHFLAQAAFNTRTLSYESLAMATLGPSGRRFVELCLLVFLVSSIVAFIVVIGDIGP HLVAEFLELEAPTQRLRILVMIVVVVFIILPLSFIDDLKKFSVISSLACLFYLFFAVR MMLESLPTIYAGEWSIHVVWWRPQGFLTCLPIVCMAMCCQTQLFPVISCIKDATTDRV DYVVSNSINICAAMYAAVGVFGYVAFYSHELHGDVLVQFPPTIVTQSLKLAFLLSIAV SIPLMMFPARTALFCLILRDKDSIHHTVDLEKFTFHLLTAVILIFNTVLAILTPNVEF ILGLTGAFIGSLVSTILPSTIYIANQSSETQNRARKVGGASTSTAKMCLIIGLFILIA STCAILMAEKKTSVVEKPKAKDDVASGELRNEELKSLESLEEKVLDKLDDISELAAKG NDTEAVKMLVEMKEQQKIQQELIEKQEKIVAQLNRKTESLANQTLEDPTAPISPAIPA VPEKSAEFKNYPPTSKPSVNTET" CDS complement(join(772206..772427,772635..772987, 774090..774567,775153..775422,775837..775995)) /gene="Cbr-hex-4" /locus_tag="CBG_22127" /standard_name="CBG22127" /product="Protein CBR-HEX-4" /note="C. briggsae CBR-HEX-4 protein; contains similarity to Pfam domain PF00728 Glycosyl hydrolase family 20, catalytic domain contains similarity to Interpro domain IPR015883 (Glycoside hydrolase, family 20, catalytic core)" /note="Predicted" /db_xref="GOA:A8Y1L0" /db_xref="InterPro:IPR015883" /db_xref="InterPro:IPR017853" /db_xref="InterPro:IPR038901" /db_xref="UniProtKB/TrEMBL:A8Y1L0" /protein_id="CAP38780.2" /translation="MAQIKKLWLLFSIITTMIMLMFLIGGSNISQGFSSSYSFNGDMD PRAMRRFKNLIVHIDLKGAPPRVEYLIDFFKLLSKNHVDGVVMEYEDMFPYSGDLEDV RRDSGAYSEDDIRRITMEAAALNLEIIPLIQTFGHLEFLLKRPAFRTLSEDFIDINTI CISDDRSIDIIHQMILQIRRLHPNSTRIHIGSDEAYHVAEDVRCHQKMSNEKIGKSEL KMRHIAKIGKFAREIAHFKTVFAWNDMFDKEAESAIKGAELHKWIVPVVWGYRVDVTE DGYFPEGLFERIPNVFEEFYVASAYKGADGARQQFSNISRYLENQKSYTKLMDLHPKA AGKVSGIFVTGWSRFNHLNAVCELLPVAIPSLIIDLLYLNYGISGNSAWKSMKNQLEC DQETFLRGVLSEWTIRGCEFPGADVFEIIMHEWKRQVDRRLLGRADLSPDQKSPTEVL SNLRTALKPILFDADIDEIYHQYLNDFHSIHSRTTIYPDLMNS" CDS complement(join(776635..776805,779257..779366, 779857..780139,780324..780513,780612..780706, 782566..782595)) /gene="CBG22128" /locus_tag="CBG_22128" /standard_name="CBG22128" /product="Protein CBG22128" /note="contains similarity to Pfam domain PF12584 Trafficking protein particle complex subunit 10, TRAPPC10 contains similarity to Interpro domain IPR022233 (TRAPP II complex, TRAPPC10)" /note="Predicted" /db_xref="GOA:A8Y1L1" /db_xref="UniProtKB/TrEMBL:A8Y1L1" /protein_id="CAP38781.2" /translation="MFIQKLAQVALLIKWMDRKYNISLHFVPVMVINSKTSMLTTDIL LEVELNRAAGPNITTVIDSAHLSIESIDLSNYPEVATPLSQFPMEADLLSVSNLIWKL PLKGSLVKHRLHLDYTVKNQDPPLKYTFDDIVELTVPDVQFEICTQVLSQQPGAQLCR ATSPCHFVISIRFLKESSCSLLIVLDADDRMWTLVERTKMVTVKDSGLGQLALTIIPV VAGFLPFPNVSIYECHFASDTIIPGKDILFFNRTAGKQIRVLSPNNNSENNNFGKDEP ARGSNRIKKTIEKLFD" CDS join(783213..783680,784397..784495) /gene="CBG22129" /locus_tag="CBG_22129" /standard_name="CBG22129" /product="Protein CBG22129" /note="Partially confirmed by transcript evidence" /db_xref="UniProtKB/TrEMBL:A8Y1L2" /protein_id="CAP38782.1" /translation="MLRFLLATSLLLCSSFHAFPVENLADCPFPNGTDKQIHSYMCSD NEQFSITDIQTLDKNGKPIYPIDPRNEFILNLTTYNHGPQIDDNHVNVKINQYKAGWS GDCAWTAIPTFGLLNGIDGCDFAHNCPLTSGPLFLILPLDLSQFSAIINMLAAYKPYE LEIRMFNYNKGNTAHEEIACVMAQVELS" CDS complement(join(784724..784783,786028..786281, 787100..787397,787444..787672,788786..789052, 789576..789727,789881..790096,791640..791963, 793373..793675,794367..794565,794705..794786, 794856..794925)) /gene="CBG22130" /locus_tag="CBG_22130" /standard_name="CBG22130" /product="Protein CBG22130" /note="Predicted" /db_xref="GOA:A8Y1L3" /db_xref="UniProtKB/TrEMBL:A8Y1L3" /protein_id="CAP38783.2" /translation="MDRDSLDLNVLSKSFVKNCVLISHAGVDQSFSVYQHALISYFSR NSLVWKINNKLFPHRLVFPLKFVPYEDKLCFGPQISPTEITKIAFLHIFNINVTSADD YRQNVRHNVSDWFAKLNSKSDVQWIIVINTNRAKDRKTKQSIMEKIKTDFAKFTNRLF ELPDTSDQTAFQSFVQGIQSFLFQHLTLVMDIWDKALKSQYEKKKQHSWDVFSYFQSM TEYGRLFWSFGAVEYSMSIFDDMEKLLHDFVVRSGDSESPRWLAQLLNTKIDDRPSLI SNFQVQRIEKRAAHYLGMRNYLFSQQIIMSIHLYQQKMKSNMRRRVYDRINKRDIPKT CCWTWWTVSESLQICQLLCDVSHLNVAPVILARLHLARFDALLSLAKLLKLNPEDKSG LTEWLQIKPLTLESRILNSAVGSMDQMCVEMEKVHDICINALAHADRQRFVLNVTHQI LSSRSINSKCPISKLSISKPILQTMPIQPSTAQMLKSLCSEILEESKNSDDILNLLFF ISQCEMDEKINEKLMEKLRKKAEDDGRPVDLSTIAITDDSNHMFSIIIESFEAVQTTD SILEIRSIIDSKIGFSLDNAKIELHFSGDSGSSIAQQSNLSVLSLQHEKKENICRLVS ELKLSKTSQTAENSTKNLQISTISPILKPGKNEILFRTDITKIGCFILEKVRISRDFL EFSTSNVVTRRPAALYCIATPHSVTVANDGQHFYAGVMQELEIDVEAKCEIPKETHLE IEPSTPNFQFLDDSQEWKNSMKMALLPFESMEKRRFRVRIWLKIDSTICESAAVQKRA LAPIYDENGIERLIRTNYH" CDS complement(join(796496..797343,797970..798360, 798437..798523,798634..798765)) /gene="CBG22131" /locus_tag="CBG_22131" /standard_name="CBG22131" /product="Protein CBG22131" /note="Predicted" /db_xref="GOA:A8Y1L4" /db_xref="UniProtKB/TrEMBL:A8Y1L4" /protein_id="CAP38784.2" /translation="MKRQLTTRSLSLAPSPDHMVPHLHLYPTVLLFSLLSFIPFFPDA TRKLTKYPKEDRTKGCVFCGDGHFADRCPIKETPLILNSSIDDRRDDDERRSRVNASP DDQSSRRSTSTRRSRSPSTQRSATPQKSSSTRRSSSSEHSSENSSPERSRPTAPPSPK RPRSRQSTPGSPEPKRRKSPDEYFTRRDDGPSTSRGYDEPRRRQDSNNGEDSDNGEGS DNSKDSDPEEESGDEESEQAPDYKEDNESIQPIEIEVEVLFGEDDGSNAQEEEEDIAI VIPPPEAERCSKMRMLAKYPKEDMTKGCVFCGDGHFADRCPVFPTAEARRQFLNNQDY CKRCLHRRGTGIHSCNDKRKCYYCHSSSHNSAVCSIPKSLTDHRQLRSSGYSRGGRQP SPDVKILEYPDPGEQYEHLQRKRDNRDNMDIRRGYNQDRRTKEDKDQRRRDQRDRHPT EDKDRRHQDHRDRRTNEDKDQSYQSGEPSAKRRGQ" CDS complement(join(800102..800247,801139..801380, 802475..802940,803227..803278)) /gene="CBG22132" /locus_tag="CBG_22132" /standard_name="CBG22132" /product="Protein CBG22132" /note="contains similarity to Interpro domain IPR013032 (EGF-like region, conserved site)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1L5" /db_xref="InterPro:IPR000742" /db_xref="UniProtKB/TrEMBL:A8Y1L5" /protein_id="CAP38785.1" /translation="MWDSPGTRAQAAKMPKPGLHDILLKTVSDTASYLGFGVKCLNGG HKTEENTCICPKHFKGKECETKICINHGKLEKVSIPTVHHVCKCPHPEFITGEHCEKI RCANYGEFQAFPTNATWRCDCKGSRFYQGEFCEKFVLSSGWVAALACFAVFVIVAFIC SSNWFSRNRTRRSSRHSHSQSQRTTRSRDALRRVIEPSMDNPRGAAHRSASSDELISS ERGAHRRTQAFPPGGITQQYVVRLDTIPTFNPSMIGGVEPMNPSDARAAIPVGPPPSY DQAMSSIRSEPPSYTPTAAKNQTDS" assembly_gap 803334..803502 /estimated_length=169 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(804955..805088,805208..805356, 806358..806668)) /gene="CBG22133" /locus_tag="CBG_22133" /standard_name="CBG22133" /product="Protein CBG22133" /note="contains similarity to Pfam domain PF07406 NICE-3 protein contains similarity to Interpro domain IPR010876 (NICE-3 predicted)" /note="Predicted" /db_xref="InterPro:IPR010876" /db_xref="UniProtKB/TrEMBL:A8Y1L6" /protein_id="CAP38786.1" /translation="MRSTEQNVEFADSDKPYVHRMIAVDSVCLEIDSQLNRIEGAVQR QPGESTYSYLKRIREKVPAIPLNLVHRIAFLQEAARFRPEKFDVAEVMTLRSSLNQFL KILSAEYDSLADEPDMAAPRGVIASFYQFGQKIMPNNSGSKRRRNKFGGSDGVRLLMK EREEQMSLLSPLARGSTDSPGAHLRRQSDSHSALLPQ" CDS complement(806967..>807167) /codon_start=1 /gene="CBG22134" /locus_tag="CBG_22134" /standard_name="CBG22134" /product="Protein CBG22134" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1L7" /protein_id="CAP38787.1" /translation="IALRSRISSNKAVTLRETQLDAVMRLRAENQARLTDCISLQFRQ LSHECCTLSDMWRTCSDVFFNA" CDS join(808934..808958,809425..809534,809723..809899, 811067..811240,811899..812165,812500..812604, 812670..812801) /gene="CBG22135" /locus_tag="CBG_22135" /standard_name="CBG22135" /product="Protein CBG22135" /note="Predicted" /db_xref="GOA:A8Y1L8" /db_xref="InterPro:IPR015940" /db_xref="InterPro:IPR038870" /db_xref="UniProtKB/TrEMBL:A8Y1L8" /protein_id="CAP38788.2" /translation="MSFDDVFHDYIRDIPMDMSRKFFPTQNIRVDMIHIPDKLTFSNF EYSFEAESRAREQFDKQNEPITLDSTTTTTSSAGGTTNSTSSSEFVKTSESKSNMDVL SQNVLVPCPVNSAPSIRTAANPTTPNTVSMPHSLHEFESTNNVFDDMQILALDDKKAL QEVLMLTNPWNTSTPPPQAPPPSSSSSSSPLPFQNNNNNHMKPTEKSAENVPEKLGKT QQEELKKRLLTKGYRTDLVEKSLNLLPKNRLVHIEYYMKACRTIEKTGMSTVDQTLPF LIQCELSDKMTVLSYSDVCANLLKMGFPRDQIFEAVAVERGDQDRALTRLLPA" CDS join(813238..813316,813562..813704,815544..815665, 816053..816284,816745..817089) /gene="CBG22136" /locus_tag="CBG_22136" /standard_name="CBG22136" /product="Protein CBG22136" /note="contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR017907 (Zinc finger, RING-type, conserved site), IPR018957 (Zinc finger, C3HC4 RING-type)" /note="Predicted" /db_xref="GOA:A8Y1L9" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR017907" /db_xref="InterPro:IPR027370" /db_xref="UniProtKB/TrEMBL:A8Y1L9" /protein_id="CAP38789.1" /translation="MLGFKSCTSTAPRVRTPACQVCLEPYDGKLHTPKILQCAHTVCQ SCMNALEEQGRRRVPNLEQTMVSVSCPICRTITQTSRCCIRTNYQLIDVVEAYGIDAS HSVAFAVVHSARCINICTKCTPIDATTTASELLSREVSLHQFAICSTCILNDHMNNGH GFIRMQPLRIEMQREENARRIVAEQEKLAQVQLRFREQLEQTMAKWLEFGGNHEANMN LFRAAQTSFQQKVLYEKFSEEISKKSAHIEKLLGHIQEWNRDMEPRGNAAMEEAEPNV GGANQHPEIRQFRPATPLNNQDDMVYYFER" assembly_gap 814060..815110 /estimated_length=1051 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(817346..817506,818064..818277, 818321..818503,819331..819678,819727..819816, 819865..819983,820480..820851,821651..822073, 822948..823008)) /gene="Cbr-mab-20" /locus_tag="CBG_22137" /standard_name="CBG22137" /product="Protein CBR-MAB-20" /note="C. briggsae CBR-MAB-20 protein; contains similarity to Pfam domains PF07679 (Immunoglobulin I-set domain) , PF01403 (Sema domain) contains similarity to Interpro domains IPR013098 (Immunoglobulin I-set), IPR001627 (Semaphorin/CD100 antigen)" /note="Predicted" /db_xref="GOA:Q60PR7" /db_xref="InterPro:IPR001627" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR013098" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR027231" /db_xref="InterPro:IPR036179" /db_xref="InterPro:IPR036352" /db_xref="UniProtKB/Swiss-Prot:Q60PR7" /protein_id="CAP38790.3" /translation="MKAWILLLVLTRCSWGLISADNTFSDRTIGEFRELLINTKDGAL FAGSEGAIFRLWAYNINDTGENVFSKKQLILSETEESECCSTASDEKLCRPSTRFLAF TNNKDSIYVCSSVGMRPEIRVLDSISLQDQQEPRTEIGICVVDPTFNSTAVVVDNGNP EDASSVYSGIRTGMGGENHLIYRPPLTKNGKQLHASIRTIYSDNKWLNEPQFVGSFDV GQHVLFFFREIAHDNSFGERIIHSRVARVCKKDIGGRNVLRQVWTSFVKARLNCSVSA NFPFYFDHIQSVKRVDKHGETFFYATFSTSETAFTSSAICMFQLSSINHLLDTGLLME ETANGQFAVTADEIPAHRPGTCSSNSHSISDTDLHFAKTHLLVSDSISGGTPILPLRD HVYTQILVDQLNNQNVIFAFDSSQQKMWKISHWKEGNEWKWNLIETQTLKTSGFRIND VALLPGEFFFATSKAGVHQFSVARCQELPSCALCSMDPYCSWNAVNSKCALKTKTNEK SVGWISSSWAGRISPECSAVEKLQVKDVYLGDGFKIQGARGGTWQKDGRDLEESQRHV ATSQGELVILNVDVEDAGTYECTRNGVILMRARVVVHENCARPTSVAEYRSCQREWCK KADAYKAALNIWSDSNKKNVQCKANGPSINGL" CDS join(826191..826258,826316..826427,826941..827147, 827575..827889,827942..828081,828179..828329) /gene="CBG22138" /locus_tag="CBG_22138" /standard_name="CBG22138" /product="Protein CBG22138" /note="Predicted" /db_xref="InterPro:IPR042317" /db_xref="UniProtKB/TrEMBL:A8Y1M1" /protein_id="CAP38791.2" /translation="MSWQMLTVPNHQKIVQLLDYESRCNIRQCSKDDRDVVDSTKLRF EKFRISEKLSKWVQEKTTIRVEIDSFTIWLTGKEDLTKIDRGWKGEPIEELSEIKHEN RFEILQKLLPRFSRNGVIEADTVEIDEINFAPPESSKFKCSNLKLHSISNPFAVEWLK KTTEVSGSLKKLDVRCWGQDEQLWPEIAGINVSESLLSELNTNCNDEQLENLKAMNLK ITASAVTVDGAMRKLEKFLKYGKKSDRLELSIEPPREFQLAGLSIPRYLEIKMLKKPD EISFVAKILGGFENVHGILDPRKIEIQLNWGFFQIICFVYEGEEKPQPCRLYPF" CDS complement(join(828848..828992,829213..829346, 829479..829905,830439..830569)) /gene="CBG22139" /locus_tag="CBG_22139" /standard_name="CBG22139" /product="Protein CBG22139" /note="Predicted" /db_xref="InterPro:IPR042317" /db_xref="UniProtKB/TrEMBL:A8Y1M2" /protein_id="CAP38792.1" /translation="MPKVRQFSVHELENNGKIFISIVFDEIVTHISSDIDSNLVKIER SGKSEKTETGDIHQIASDICNEFIENGLLESENFQIDKTKIPVPSNLQKIRCSRFSSA FLGDQKVIKWLEKLDGDVEILKLTENGVIKGLGTMEQLKNVTKELIAVGCDISDEELE NLRDDYCRLVLHSEKLTEKGVKRALENYLEQPQKAGNVFDVRFKASSTDFDKNDLFKG LMKAEITWEQYFSFKISYSLNCGKILEYDGFYFDLENGLHSVKIMIPMDWKPRLRDGN TV" CDS join(<831769..831859,831902..832096,832168..832244) /codon_start=1 /gene="CBG22140" /locus_tag="CBG_22140" /standard_name="CBG22140" /product="Protein CBG22140" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1M3" /protein_id="CAP38793.1" /translation="LTTDSKDCGRIGKLFEDNFLFKECLWSYTKEDVIQKITALPAGV SMEFSLESAKRAIHGQIEYIVSIAGPGMDKIQAQFVYCPFTNDLKSGNVPKFKFKTLN ILDLLLPTVQIPIESKIA" CDS complement(join(832924..833117,833175..833321, 833913..834044,834099..834242,835489..836526, 836694..837080,839877..840105)) /gene="CBG22141" /locus_tag="CBG_22141" /standard_name="CBG22141" /product="Protein CBG22141" /note="Predicted" /db_xref="InterPro:IPR032710" /db_xref="UniProtKB/TrEMBL:A8Y1M4" /protein_id="CAP38794.2" /translation="MWKQSSILLLLLVGASWAFVPDDPEFAFYGSDGPVEVAKRFLDR IKRSVESRDVAVISGLFNPGFEFKGCKGDYDKAKVVGILSHLPVGTPFSMTLQSAVTL GTDHIRYSVSVSGFGPSPIIAEFILNIHDQQLQCGNVPACQRKTFVGILSGYQGFVGQ ESPMEVAKRFLDRIKRSVDSRDVAVISGLFNPGFEFKGCKGNYNKAKVVGILSHLPAG TPFSMTLHQSAVTLGTDQIKYSVSVSGFGPSPIIAEFILNIHDQQLHSGSIPACQHLM GFFRNFIASTPEEQVKAFLDRFKAAITSRDSAALLDLFQPDCVFIGCKATYDREQSVA MIMQIPAEAHLAYTFKSVQDLGDSIKTVVIAEGFKATIHVEFEFVLSKKDQKIEKASM ACPKRRRLVADWIGEKGSVDYGFSREVRAPLGDADEMVHDFLERMTKATVDKNYDIIS SLFEDGFVFKGCRGKYTKGKFQRVMEYGSQFKSFPAQVTKILLKLKKGTPFTINLMEV NDQDTNVKYTVQIVGMGAMDMQAEFVLNKKTQKLVSGGIPLCQDSQLDSNSIVEQFLA IMQPAVDTRDGTKLASLFDDEFKFNTCNGYEDKAAAIAKIMSAPSMFKILINFVSSRF LANGQIETVVDIISIMGRQHSQLDSNSIAEQFLTKMRPVVGAGDVTKLATLFDDEFKF WMCNGKTEGRAAVIEVIGKSPIAVSLNLVSSRFQSREHIYLTVDISAGFIGTWRTVFL LDLTKNVLIGGKLLTC" CDS complement(join(841008..841417,842322..842555, 843057..843099)) /gene="CBG22142" /locus_tag="CBG_22142" /standard_name="CBG22142" /product="Protein CBG22142" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1M5" /protein_id="CAP38795.2" /translation="MRTGHSMYLLSKAQLLASLVGKTIFTSFEKYQEVLGQDTWRRYP SSKNLDTMERFVPQFQSKSERTDPPSTSITAGFKPRLERKTPSADARFVIFEQVCLIC GAKITSSVNLYERSNHCLTHIHSSCTTRAAGRRYNLSLDGIAISNDLQSILRATEFKR NAAMYQTELTEITRALDAARQRLMVAEQRTNQLSAESRELKAERDHLVNQINARDEYE FDQPIGRPEH" CDS complement(join(843555..843668,843718..843905, 843951..843999,844049..844120)) /gene="CBG22143" /locus_tag="CBG_22143" /standard_name="CBG22143" /product="Protein CBG22143" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1M6" /protein_id="CAP38796.1" /translation="MGAGFHIFDFSEILLFLDPLNQKNAFSDVFLEVGGQHFKTVLVV KLRMPTQSRTHGTTRLGRVQCVVNGLAPAAAKVVAPAHGSVAGPSAQAIAPVQAQKAA KKRAGEGEEGASAKKIHYPNIHSIIIPFHMKLQKPINI" CDS complement(join(844741..844882,845313..845869, 846743..846886)) /gene="CBG22144" /locus_tag="CBG_22144" /standard_name="CBG22144" /product="Protein CBG22144" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1M7" /protein_id="CAP38797.2" /translation="MRNSKDTWTSGHDDVAWRRRNTVEFWMSDGSGRRSVWVDKDRLF VLGMKTYPEVVDLTQISPLASQVLEQLLTGHRRYFVLVSMNQCAEICHVAQELKFQNL LKLVEKDLVGQRFGSMEQAVDSLTVAIQFGMADAVEKLVDEIIFGFSLDEQFLIYCKN GMAVDMVLNRKAELEGYGGENSGPRDEQYLDPGLYEDLGPQENPRNQNQNQIAIPQAA QNSHMHKILLNAAKERFRTFLNRPINSVKNGIAWVSAQNQRLIRRPNVGPPRNREFQN FQHF" CDS join(847235..847246,847536..847835,847903..848145, 848365..848631) /gene="CBG22145" /locus_tag="CBG_22145" /standard_name="CBG22145" /product="Protein CBG22145" /note="contains similarity to Interpro domain IPR001666 (Phosphatidylinositol transfer protein)" /note="Predicted" /db_xref="GOA:A8Y1M8" /db_xref="InterPro:IPR001666" /db_xref="InterPro:IPR023393" /db_xref="UniProtKB/TrEMBL:A8Y1M8" /protein_id="CAP38798.2" /translation="MIIKEYRIPLPLSVDEFERGLLYAVSACSRNETGGGEGAEFLEQ REFTSDDLRPGQTVTGTYTKKIYRLRSKAPWVLQKLLPPEAFEIHEESWNAYPYCKTV LTNPGYMKENFHQVIETLHLPDNGSTENALDGPEKREIVWVDIADNDIFGAKNYKKEK DASIFEPECVERGPLDEDWIDEHDPIMCAYKLVSCHFKWTGLQRMVEKTIHKQYPRVF GLMHRDAYVLLDEWFNMSMESIREYEEETAHVLRKQLAHPEKRGTTCDDDNNNNK" CDS complement(join(849382..849745,849792..849884, 849931..850006,850394..850593,850982..851247, 851602..851842,852129..852327,852372..852541, 852590..852690)) /gene="CBG22146" /locus_tag="CBG_22146" /standard_name="CBG22146" /product="Protein CBG22146" /note="contains similarity to Pfam domain PF03006 Haemolysin-III related contains similarity to Interpro domain IPR004254 (Hly-III-related)" /note="Predicted" /db_xref="GOA:A8Y1M9" /db_xref="InterPro:IPR004254" /db_xref="UniProtKB/TrEMBL:A8Y1M9" /protein_id="CAP38799.2" /translation="MNSNNALDLKSKRIVYQMSLELEQTDVNHDFHNALLSLQMPDLD KNSGFDGFLKLQEDIKESLRNFMRFGQKSDLLSQLNGQQLKCVSQMLKSRSTTSSSGK TSNGEYSGERIRAKSVKAVEEDIPPVPFGIPPLEVNGLYRDDGLDEEEHYSDMDWLNS QRSSRFPEEPIPKSAPVKSKTPEVPKSVKFSEPVKKIASRARPIQKSDAQIQTDQLVL KKDEQEENLKKTSGRSEKITAETGTNCRLLITPRVEEDFSGKSSPLLSPISTVPSDIS EGEVLGPVSNVIVVRTDGSIVPTPRVLEDDEENILIAKSVSPFGVAEIDIPDTPPPKI SYKNRRAGKGEAYEPTSHEHVANTVSHAVGIGPSIFIFYFFMCEYAHRELQHILMVIY GTFTTLLFTTSTVYHFCEFLFRQQNKHRKLRYYLHICDRAAIYLFIAASYTPWLTLRH CGLPGLNLKWMIWVFALLGILYQYNFHERYKTLETILYIFIAAGPSVAIFTMNDRTGL EWMMIGGMMYAVGVVFFKLDGILAFAHAIWHVFVILGASCHTYAVYAFLLGPDKNNPV PDV" CDS join(856788..856833,857375..857648,858796..859403, 859470..859538,859589..859836) /gene="Cbr-drag-1" /locus_tag="CBG_22147" /standard_name="CBG22147" /product="Protein CBR-DRAG-1" /note="C. briggsae CBR-DRAG-1 protein; contains similarity to Pfam domain PF06534 Repulsive guidance molecule (RGM) C-terminus contains similarity to Interpro domain IPR009496 (Repulsive guidance molecule, C-terminal)" /note="Predicted" /db_xref="GOA:A8Y1N0" /db_xref="InterPro:IPR009496" /db_xref="InterPro:IPR010536" /db_xref="InterPro:IPR016123" /db_xref="InterPro:IPR040287" /db_xref="UniProtKB/TrEMBL:A8Y1N0" /protein_id="CAP38800.2" /translation="MSIVYLLLYVILLFLEPINPCRVEECAAWFQKTKDYENLVPKAT ERYCQVLQTYLKCMNDTQKFCHGNLRFHSSELVMRRHWKEFECEKWESCNENQMGLKK KPVNTCYFNPPPSSRKLKYCSLFGDPHLIMFNGSIQTCSEEGARPLVDNRYFLVQVTN KNVRGEALTTTVTKVTVLIRKHNCSSSLHYEATSDEEGLPRGFVDGTTYQAKGSSSNS VEVLWQDNNYVEIALHFIHSSIHIRRQGPYLSVSVKAPSIVLETEGDVANEMCWAGCR RRSRIAAETAVEEPKKFAECYRRRVHVPKKVAEDRCRNVGTSGTFFDACIFDLMFTGD DYLVHLSRNAQSDFRRLAPHHFQSQIIQQRVRQQQEHNRNLPLNSTQVFDNCLPNSSS FSKSITNCSALLAIFLILIPIL" assembly_gap 858362..858686 /estimated_length=325 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(860360..860477,860542..860628, 861369..861691,861813..861908,863062..863217, 863296..863354,863409..863502,863557..863607)) /gene="CBG22148" /locus_tag="CBG_22148" /standard_name="CBG22148" /product="Protein CBG22148" /note="contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)" /note="Predicted" /db_xref="GOA:A8Y1N1" /db_xref="InterPro:IPR000242" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="InterPro:IPR016130" /db_xref="InterPro:IPR029021" /db_xref="UniProtKB/TrEMBL:A8Y1N1" /protein_id="CAP38801.1" /translation="MTKDTVNRRRILQDEFLVLSRTEARRLTRSTERATRHPAANRYS DIVPYDHTLVELDTGDYINASFVQGETDALRWIATQAPIDAGEMVGKETVSDFWQMIV QYDVACIVMLGQHQEDFVYHFVALLKSYVLLFDWGGNLDFEASYDNLNDTQKCGEYWP TSMGKTTRYGSVEVKIVCELEEKAWVHREFDVSPTPSYFSRSTKNSRKSRTSSVANHM KVSHWQYKEWKDSDTPRLSTFLEFLLQVRGRQYTSPVVVHCSAGIGRTGVFICTDNVI SRLESEGIIDIFSEVNRSRQQRPSMVHTVKQYECIYNTIGEYLRQQQQQKK" CDS join(867063..867329,867850..868198,868250..868368) /gene="Cbr-ubc-3" /locus_tag="CBG_22149" /standard_name="CBG22149" /product="Protein CBR-UBC-3" /note="C. briggsae CBR-UBC-3 protein; contains similarity to Pfam domain PF00179 Ubiquitin-conjugating enzyme contains similarity to Interpro domains IPR023313 (Ubiquitin-conjugating enzyme, active site), IPR000608 (Ubiquitin-conjugating enzyme, E2)" /note="Predicted" /db_xref="GOA:A8Y1N2" /db_xref="InterPro:IPR000608" /db_xref="InterPro:IPR016135" /db_xref="InterPro:IPR023313" /db_xref="UniProtKB/TrEMBL:A8Y1N2" /protein_id="CAP38802.1" /translation="MDSRASTSSGAMRALSMELKNLQSQPVEGFTIDVNEDNMFLWSV GIYGPPMTLYQGGYFKATIRFPSNYPYQPPSMKFTTKVWHPNVYENGDLCISILHAPV DDPQSGELACERWNPTQSVRTILLSVISLLNEPNTSSPANVDASVMYRKWKEEQDPEY AKIVKKQVEDSKKVAQSEGIQVPETIDEYCVKWAPPKDETDYGMLDEDCFYDDYQEDD QSDEEEDDCGASDYGDDDEDSGQGEN" CDS join(869042..869154,869334..869454) /gene="Cbr-lsm-6" /locus_tag="CBG_22150" /standard_name="CBG22150" /product="Protein CBR-LSM-6" /note="C. briggsae CBR-LSM-6 protein; contains similarity to Pfam domain PF01423 LSM domain contains similarity to Interpro domains IPR001163 (Like-Sm ribonucleoprotein (LSM) domain), IPR006649 (Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type)" /note="Predicted" /db_xref="GOA:A8Y1N3" /db_xref="InterPro:IPR001163" /db_xref="InterPro:IPR010920" /db_xref="InterPro:IPR016487" /db_xref="UniProtKB/TrEMBL:A8Y1N3" /protein_id="CAP38803.1" /translation="MNKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIAL EQTEEYSNGQLQNKYGDAFIRGNNVLYISTSTK" CDS join(870116..870148,870554..870670,870719..871252, 871330..871418,871473..871680,872317..872880) /gene="CBG22151" /locus_tag="CBG_22151" /standard_name="CBG22151" /product="Protein CBG22151" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1N4" /protein_id="CAP38804.1" /translation="MPPGKFRLSDTMSREWRTCPRCKNRFLKPEVLNADKHGYTKYWW ICENFNNCNFPLDMPSNIYHVTQSPAQKQQKCIPLPEIFSLPEKYHYMYPLTFVNSRP NSRCSSVVSSHVANSRNDTTIDSWTDGTLSEKSSGQNRLKALSLKSGGTINTNSNTPS TSAQSSERGEHENSDSIDEEVEAAAKKSTTRCRVVRRKRYHDTSRSWAALIEKVSADA HTANSIINMEESELFQRMKEFFDAQYFQRTPMAFKRPGIRVTYRVEDVESCLAAVTSA DWRTARMKIPCMTVTEKQSLRTATSEELLKSVGIDLAEMKKAVGEKVGKVMRGFSTET LTKRRKIEEERKLEEQQREQTRQETIHHSLSARILNRKMRRDEEERSRASTPASSVHD LAHDVPEYHHQQPQSSHQFQEPAAPVQFSLGEEGEQEQQWGFDLDGLYESIHAQNYQN HVATDPQNPVDAILSQLDEEHQEHPVEGLEHNGEHSGDEQEEEDVGFGDFGASDDNFA ADNFGF" CDS join(873126..873269,873529..873865,874750..874862, 875181..875450) /gene="Cbr-atg-5" /locus_tag="CBG_22152" /standard_name="CBG22152" /product="Protein CBR-ATG-5" /note="C. briggsae CBR-ATG-5 protein; contains similarity to Pfam domain PF04106 Autophagy protein Apg5 contains similarity to Interpro domain IPR007239 (Autophagy-related protein 5)" /note="Predicted" /db_xref="GOA:A8Y1N5" /db_xref="InterPro:IPR007239" /db_xref="InterPro:IPR042526" /db_xref="InterPro:IPR042527" /db_xref="UniProtKB/TrEMBL:A8Y1N5" /protein_id="CAP38805.1" /translation="MDYEVSRKVWDSQIPVQFTLQAGGPLGDPLPYYTMLPRFTYLAL TLPKVLSSFNRRENGETILAEKVHLEVNGAPVKMYIPVGVIYDQLNQKNLESEGILEI HVRTSQPAPLDFQMVSVDSMRAMFCQTVKEADYLKTKAEVTSSLMKEDMPQLWQSVVN NNFDEYWGMIQKLMDPKDGKDFLHVPLRVYVKNQPFKQALITVKHPDGSLRTIGDAVS EILQLSTSSEASTPTSESSATSSSEASSPDDRRLISHGIDVPRHTPLIFAAKNLSYPD NFVHIVIAEAR" assembly_gap 874111..874321 /estimated_length=211 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(880047..881103,881663..882123,882706..883397, 885413..886169,886839..886982) /gene="CBG22153" /locus_tag="CBG_22153" /standard_name="CBG22153" /product="Protein CBG22153" /note="contains similarity to Pfam domains PF02174 (PTB domain (IRS-1 type)) , PF00373 (FERM central domain) , PF09379 (FERM N-terminal domain) , PF09141 (Talin, middle domain) contains similarity to Interpro domains IPR019748 (FERM central domain), IPR015710 (Talin-related), IPR015224 (Talin, central), IPR002404 (Insulin receptor substrate-1, PTB), IPR019747 (FERM conserved site), IPR019749 (Band 4.1 domain), IPR018979 (FERM, N-terminal)" /note="Predicted" /db_xref="GOA:A8Y1N6" /db_xref="InterPro:IPR000299" /db_xref="InterPro:IPR002558" /db_xref="InterPro:IPR011993" /db_xref="InterPro:IPR014352" /db_xref="InterPro:IPR015224" /db_xref="InterPro:IPR018979" /db_xref="InterPro:IPR019747" /db_xref="InterPro:IPR019748" /db_xref="InterPro:IPR019749" /db_xref="InterPro:IPR029071" /db_xref="InterPro:IPR032425" /db_xref="InterPro:IPR035963" /db_xref="InterPro:IPR035964" /db_xref="InterPro:IPR036476" /db_xref="InterPro:IPR040658" /db_xref="UniProtKB/TrEMBL:A8Y1N6" /protein_id="CAP38806.2" /translation="MGVLSLTVSCQEKGIKKMMQFDPSTLVYDAIKLIREKFGMTDTN AHEYGLFRIGNEPTKSIWMDNGRSFEHYLVRSKDEIEYKRKIRLLKVRMLDGAVKTIS VDESQPVSQLMMTVCNKIGISNYEEYSLVRDDILMQNGRDGGGGGSTWNLKNQENRAR SSDRGGGVYGTMRRKDEAKMEELRKKLHTDEELPWLDHQKTLREQAISEEETLVLRRK YFFSDSNVDSRDPVQLNLLYVQCRDGILRGLHPVEKEKALELGALQSHIQYGDFPHDK PKFHLDGRDVLPKEYAKNKDNEKKVVAMYKELSGTSELDAKSKYVHLCRGLKTYGVTF FVVKEKLPGKNKLVPRLLGVNKESVMRVDEKTKEILKEWPLEQVRRWVPSPKCFTLDF GDYQDGYYSVQTTDGEKIAQLIQGYVDIILKKKRTQDHQGIEGDEGSTMLEDMVAPAK ATLVAHGQIGNGQHAQDGLVAVRGVLRTPQGGQGYGINGAQYGAVSGEITSQELARFF WFPIFEDLGSNDFQIRSIDNNDFQAQRLRYQDMYQHPQRALIGTIEATIRTVEQAEEE LEAEPQIDIPRFNDDLSANRWMEEQKAVNKENVNERLAAMGAATAQVVQWTAVEEYDD RVGSAIATIGSNLPDVSRNVRDLGAFMEREERGDLVQATKLLCGAFGDFLTAVNPEQN ERRNKVFTAAGRVGEFSQQVINSMDPPSQHQQQYDDYLVQRAKHVATSTAQLVLCAKT ISADCEEPQVQERVIQSATKCAFATSQLVACARVVAPTIDNNACQQQLTTAATEVSQS VNNLLHDAEHAVYQQSSLTDIHEAARQVTSALDSLLEHAKCSPKTMTTRRKEEEMYNE VLRRTNRMVVHQGPSEDLTREARKVVRHSQLLTEQFQHEAHQRPEHRDRLLDAAAKVA HATSEMILATEQAESQPRHVETEYALRTAAENLGKVTNETTKEQQEQHIMQRLEQAAK QTAYDATQTISAANSTKSVYTRGVWAEPPILHGAFLQKKQQEHKRTETTEQLLVDDSH TILRIR" CDS join(888553..892650,893729..894136,894814..895029) /gene="CBG25184" /locus_tag="CBG_25184" /standard_name="CBG25184" /product="Protein CBG25184" /note="contains similarity to Pfam domains PF08913 (Vinculin Binding Site) , PF01608 (I/LWEQ domain) contains similarity to Interpro domains IPR015710 (Talin-related), IPR002558 (I/LWEQ), IPR015009 (Vinculin-binding site-containing domain)" /note="Predicted" /db_xref="GOA:B6IM09" /db_xref="InterPro:IPR002558" /db_xref="InterPro:IPR015009" /db_xref="InterPro:IPR035964" /db_xref="InterPro:IPR036723" /db_xref="UniProtKB/TrEMBL:B6IM09" /protein_id="CAS00939.1" /translation="MTPSSSKVYFSRIITSIRESQRSETPSDKFRAQSRLIRDSYNLL ETSVRLFETARTTVPMISDTHLASSLDQSANRLGTSLAELRTAVNDAQQLNFSQQLLH SEELIKELDEQLINTQRKAQLNQLPPVPHATSFSTSSKLMATTTNVGSGVAQLITAAT TSNDDRYVATSAVELAQGLRNFADAVTEIVTVRTDIALDKLIVSARSVVHDCGRVFDR VREQCHVSQLTEAAQSVSTNLRQVISCLPDTKHVERAIQEIQRASTSKNLRAMEVRQA ANKFSEATSQLVITIGSPQNAEAVDVFVRAYCDLHGSVIAQLQRHANVNTKTAIVDRL EEAQRGSIGVLETLRITGGPNDQTLSQQFTSKTSELATVVNQLVELSEPEADSRWQRE CDAALRRIQAVYHVTQQANVPLNDNGYFQSLQSVSEGSRRLGEAMTGMARHAKANDTE GFCTSVRNSADALCSLAESASHSAYLVGTSHPASSPGRAALIDSSEVARIVESINSSC QRIESRNLDRTDLMSEVSSVTKQSSSLAQLCRLASEKTQNPNVKKHLVGCALSVATMT SSLVNAFKDIERVPDADSRCSTSASELRQVAQQLLHFADKPDFAAIQGTISNEGRTAQ LPILQASREMLDSSAQMIHTAKSWASAPQDEATWQRMAVNSREVSDSIMRLVSAIHEA APGQIELETAIGRLSALSGQVERSAMDAYASGNVQQHGANAERQLLQQVQHIASQLED KVDDLHSAAVEHGERLPKAVQLHCRMVEDLAEAACLAAGMTVDSNQQTELFDKCKTVV EAELAMMIASRESGGNPNAVHAHANVQDAAGNLKHAIGDMRQTIAKVSSEQGGVQGLV DTISSSIANTDLAMTSQHGSSFAEAQTKMTACLEDIRRTAIEMPTLNTTDLGSAALNL SEKYRLVATDLRVAVQLLPEAEIGSRLKFAVQNLGTSCIDTVQVAGHKRAHPEDERIQ RQLIQHAALVEERVDQVLAALHQASRGTQACINAANTVSGIIGDLDTTIMFATSGSLN SSDGRKFPAHKDAIIKTAKALVEDTKALVAGAASNQEQLAVAAQNAVRTIVNLSDAVK SGAVSLSSDNSESQVLVIHAVRDVAAALTSLIQATKNASGLSLQHPAMGHLKDAAKVM VGNVSRLLRTIAAVEEKSQQGTRAVEAAIEAIGFEKSQFDNDINEGVAASSDIRVENL QQSADHVAEITKRVMAGGQTEEEIIGVANLSRSAVRSLLAVIRTISNEADTVQQRYAV LDSGRDVADKVKDLLVSLHGQMVSKPGQEQSKQTLLDASREVSRALSNLVGLCNEMTG VPHGHMEMDSAAAQAENELLGAASSIEAASLKLAELRPRQTVQENTHEIVEAEFDENI IASAKGITNAVHILVRAATSAQRELAMQGRTETRPSGSGTYQWSEGLTSAARVVVASV HKLCDAANTLMKGQTTEERLISAAKQVSSSTAQLLVACNVKADPDSQANRRLQAAGQA VRVSTKNVNAAERLVQSAQQGIARDDRNIAISDRLVNGIAQVMDAQEEVLRKERELGE ARHKLAHLNKARYEKDGTPEA" CDS join(895456..895780,896019..896311) /gene="Cbr-pqn-88" /locus_tag="CBG_22155" /standard_name="CBG22155" /product="Protein CBR-PQN-88" /note="C. briggsae CBR-PQN-88 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1N7" /protein_id="CAP38807.1" /translation="MLPILLLICVSSTWTQPILTSSQAPPTFSTPEDPFGMLNNQDGV QNLGLQNQNGFFGNAEGSTTPGAFFGANSNGGFQNQDNQNLNQNSNGGGFFGGNNQQQ QSFQTLPPNNNQNFFGSQNDASSSLNQNQAIQNQNQNQNQNQQFGNQGFQNQGFQNQN SQNSQNQQFVQSGQLTSGQQGVNQGFPISNAFPTNRLPPIFGRKK" CDS complement(join(896679..896935,897333..897777, 898516..898598,898672..898976,899193..899293)) /gene="CBG22156" /locus_tag="CBG_22156" /standard_name="CBG22156" /product="Protein CBG22156" /note="contains similarity to Pfam domain PF01467 Cytidylyltransferase contains similarity to Interpro domains IPR004821 (Cytidyltransferase-related), IPR004820 (Cytidylyltransferase)" /note="Predicted" /db_xref="GOA:A8Y1N8" /db_xref="InterPro:IPR001977" /db_xref="InterPro:IPR004821" /db_xref="InterPro:IPR014729" /db_xref="UniProtKB/TrEMBL:A8Y1N8" /protein_id="CAP38808.1" /translation="MKTGLLVISKQNFAEIQDFLKSANDSGVERLYVRLSIPRTDDQI SKIYLLSANLCPKVDVRILAKPQNPLETDVQLFGSEKPLESSGKIEKKYKKVVLGGTF DRLHNGHKVLLNKAIELASEEIVVGVTDKEMIIKKSLYEMIEPVEYRMRKVVEFVEDV SGEAKCTTEPIIDPYGPSIRIPDLEAIIVSRETVKGGDAVNKRRLENGMSQLEVIVVE LVEGSDVILNETKISSSSRRREDLGRLLKPVQNPRTPYLVNLNGGSGSGKEEIGEMLK DKAGIQVLNWDEMCEEEKSQVLKLEASRISKEKVVVLLSSDPLDFTSEIWSIFLPSLE AIKRIIEKNPEISEDVAKERLQAEIQNKERIEKCHVAFCALWSEKETKEQVERAVEEL MKRI" assembly_gap 899533..899792 /estimated_length=260 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(900007..900164,901306..901579)) /gene="Cbr-cpx-1" /locus_tag="CBG_22157" /standard_name="CBG22157" /product="Protein CBR-CPX-1" /note="C. briggsae CBR-CPX-1 protein; contains similarity to Pfam domain PF05835 Synaphin protein contains similarity to Interpro domain IPR008849 (Synaphin)" /note="Predicted" /db_xref="GOA:Q60PP8" /db_xref="InterPro:IPR008849" /db_xref="UniProtKB/Swiss-Prot:Q60PP8" /protein_id="CAP38809.1" /translation="MAGFLMKQMVGNQLNEVTGGLGLKDDGGEKTETGEDPEVVAARL EQEERRKEKHRKMEQEREKMRQGIRDKYAIKKKEEGVAMDFTEGRIGGPRKTPEEIAA EMNAEDDSIIGQLGLTEQVEKAKTMATGAFETVKGFFPFGK" CDS join(904536..904611,904658..905095,905221..905762, 906444..906836) /gene="CBG22158" /locus_tag="CBG_22158" /standard_name="CBG22158" /product="Protein CBG22158" /note="contains similarity to Pfam domain PF08164 Apoptosis-antagonizing transcription factor, C-terminal contains similarity to Interpro domain IPR012617 (TRAUB)" /note="Predicted" /db_xref="GOA:A8Y1P0" /db_xref="InterPro:IPR012617" /db_xref="InterPro:IPR025160" /db_xref="InterPro:IPR039223" /db_xref="UniProtKB/TrEMBL:A8Y1P0" /protein_id="CAP38810.2" /translation="MGLLDDISKLTQPAAELPDVEDDFDASSLVKPTGNRAKNKLQNF NFDEGKYAGVAVSSKDIFGDVSEISGLKAKDSESEDDLDDEAEDEEDFEEESDVEMEE DVGEKKKKSNILENLADSDEDEEMNDEEEEDGDSGDDEKEEEDDGDEEEGANLKMTTL SLRDDSDKTEKATSVLHQRQVWDDLSYSNIRIHALLNAMNQMPRGDARRELVKNCDPS TQKSMEAAMENMAKLRDLMAKAGGFFEEKSGKTEDSDDEEIPSDDEEILSDSEGLDDE EEEEEDEAPKKKAENQGTSLKSLKKNLETLDGSIDKFRAATLTKWYNRTKVLSSKSMN NADFSVFEKGSILGQINKVLADEDKLLKKVHTNRSGKTRLGASASSDSHDPEIFDDSD FYQVLLKQMLEARSQMNQNSQDGADMTRNYMELQSMISNKKKRDVSQLSSKDRKLKYE PIAKLINFYPSKPSVATWSHESRNELFKSLFS" CDS complement(join(907291..907441,907708..907832)) /gene="CBG22159" /locus_tag="CBG_22159" /standard_name="CBG22159" /product="Protein CBG22159" /note="contains similarity to Interpro domains IPR018015 (Bladder cancer-related BC10-like), IPR009598 (Bladder cancer-related BC10)" /note="Predicted" /db_xref="GOA:A8Y1P1" /db_xref="InterPro:IPR009598" /db_xref="UniProtKB/TrEMBL:A8Y1P1" /protein_id="CAP38811.2" /translation="MYCLQWLIPVLLIPKHWIHPIFLVEQALFMWFYIVGFFLERRPC HICSGIFFIALALICYSDPDSCIFWPTCTKKLNGEVCNYVWRDRIAP" CDS join(908319..908432,908554..908897,911140..911176, 911970..912051,912471..912746,913645..913937, 914375..914513,914958..915274) /gene="Cbr-adpr-1" /locus_tag="CBG_22162" /standard_name="CBG22162" /product="Protein CBR-ADPR-1" /note="C. briggsae CBR-ADPR-1 protein; contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domain IPR001680 (WD40 repeat)" /note="Predicted" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR011990" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:A8Y1P4" /protein_id="CAP38814.2" /translation="MLTALEKRYEKARFGSLFPDIIDENMLIDSFECCDTLEGHTGCV NTLRWNRNGQLLASGSDDRHVKIWRAGLEVESLATGHVGNVFAVEFLPGSSDRKLVTG AADHIVFLHDLEVKNGGKRRWELEGRVKRLCTLEQESTLWWAAVEAVEGVQCIRAGQH VVSYAIVVGFDETPVRLYDRRNFSNPLLVLNPLDADADTFQTTHVAFNKTGTEVVVNQ GNSGGICVFPIDSYDAPRTMERLNDVLGGDGEPTISSNNLPYPDLREAGHMMLKEKKF SKAVDYYSELISRNYKDRAFRSVCYSNRATALLVRRQRGDTYACIRDCVKALEIHQGN SKALFRLIKSFTSLETPEYAKTCVEVFRKWYPNRETEAIDNMEKDVVMLKENEDQNNL ASKPGYMDYTQRFVGTSNCQTDIKEANFFGSRDQYIVAGSDCGHMFVWNRDTSRLQGI WKADDHILNIVQPHPEAFLIATSGIDDDVLIWEPVLEKEEVEGFITRRHADPFEFIKN YKETYGVRHQTLRQFQRHGQQCVQS" assembly_gap 909296..909881 /estimated_length=586 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(910272..910619,910741..910854)) /gene="CBG22161" /locus_tag="CBG_22161" /standard_name="CBG22161" /product="Protein CBG22161" /note="contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domain IPR001680 (WD40 repeat)" /note="Predicted" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:A8Y1P2" /protein_id="CAP38812.1" /translation="MLTALEKRYEKARFGSLFPDIIDENMLIDSFECCDTLEGHTGCV NTLRWNRNGQLLASGSDDRHVKIWRAGLEVESLATGHVGNVFAVEFLPGSSDRKLVTG AADHIVFLHDLEVKNGGKRRWELEGRVKRLCTLEQESTLWWAAVEAVEGVQ" CDS complement(join(915595..915630,916493..916898, 917154..917355,917445..918635,920814..920936, 922078..922120)) /gene="CBG22163" /locus_tag="CBG_22163" /standard_name="CBG22163" /product="Protein CBG22163" /note="Predicted" /db_xref="GOA:A8Y1P5" /db_xref="InterPro:IPR000884" /db_xref="InterPro:IPR036383" /db_xref="UniProtKB/TrEMBL:A8Y1P5" /protein_id="CAP38815.2" /translation="MKLPFFLLLLIIPIGCQLHDMEMTTQPSWAPTGRLNQFNGFATP RPSLLPANAQMVYASVWAAWSAWSFCSDSKRIRVRACNTVRGFRCLGPNQQTEACDPS TSPILGRPPRPNTINDYDTVDPWQEDRVEALKQLYPDESIDEKLNHLPDHEKERLRAR LLPPPTQMSHELLNRPGNERDGAPGATPERLFGARALGSKSFAVPNTPIQINGKDALK FPELLADDQFFSDISNAEKSVVSDNQNQNQKLEDFSKIEDFQASVDAAENQRNLEEFE KLVEEHEIPRPPKNRGEGTFSAKKAPESALKKESESSEMQKLEESMDGPQFREKEFKE DVFGSIEDLMTTKTTQTTQTTTPSTTTTTTTTPRTTTTTAPTTTTTPTTTTTASTTRR PPTRVTPRLPTVIPEDHVELVTPTMVFKTAEQKMMSPEVINFFEEVEHVMVEQAATTR KPWKNAIHYGEVFPRIPFATLTQTPPPTTTTTTPSGFPIPEEISLDTLHALDWMLANM TKAAEEGGLGDGNELRLRLDSSSPNESIPASTKLLSKKPKSSKKSKKNRVKTHRTKVI QLHYGEVNPAENADRKFPKFRNRNAHRAKIFGIKTSSIPEDQLKIQTKKEELVDEIND LRDLMEQMDERIESRSALMEENFDSLVKPKHEHDSPYRHRQV" CDS complement(join(922678..923433,923485..923542, 923613..923617)) /gene="CBG25185" /locus_tag="CBG_25185" /standard_name="CBG25185" /product="Protein CBG25185" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IM10" /protein_id="CAS00940.1" /translation="MLTKVTNSVVFCETLINSSQDRKSLDWKKFRHFTTPSDHYETPY QKKEFVLDCVYIHDILRTLILAGGGYNGPTMKGGPLRIHFTSQHLELVFRGPLANGRG FLALKTTTPEASKIWKEWKKVPTFSHVEDVDHGSLGKPANVFKNRLKLAEEYYLGPSF RVWVESGFAATAEYLNSDKGRLAVLEVVAAMQMFYNFLSTQPAYMEAAVNDGRDALVR LKEFVEYCNKLRLNCFTADLIDQQLDEPYKIYNNSTAPTQSYWYQHSANFDPNS" CDS complement(join(924119..924262,924652..924889, 925068..925195,925244..925306,925352..925447)) /gene="CBG22164" /locus_tag="CBG_22164" /standard_name="CBG22164" /product="Protein CBG22164" /note="contains similarity to Pfam domain PF06244 Protein of unknown function (DUF1014) contains similarity to Interpro domain IPR010422 (Protein of unknown function DUF1014)" /note="Predicted" /db_xref="InterPro:IPR010422" /db_xref="UniProtKB/TrEMBL:A8Y1P6" /protein_id="CAP38816.2" /translation="MPKKFATENPKVTAARDRKATAKKDEADKKAKAAEDAKWVDDDK LANRKMQRKEDDEKKREEALRRKEENRKMAEEEMSSLGNKKPAASSAQKVTRAHIHIR KEDEERIMRELEEKRKQEAQKIEVAGELEENFNKLEIEEGGARNVDEALRVLGDEKAV EEDKHPEKRMRAAYLAFEEKRMAELKIKHPTFRLSQLKQVLKKEWQKSPENPLNARIL ALSK" CDS join(927024..927113,927288..927459,927985..928216, 928560..928662,929377..929534,929787..930008, 930278..930455) /gene="Cbr-bre-4" /locus_tag="CBG_22165" /standard_name="CBG22165" /product="Protein CBR-BRE-4" /note="C. briggsae CBR-BRE-4 protein; contains similarity to Pfam domain PF02709 N-terminal domain of galactosyltransferase contains similarity to Interpro domain IPR003859 (Galactosyltransferase, metazoa)" /note="Predicted" /db_xref="GOA:A8Y1P7" /db_xref="InterPro:IPR003859" /db_xref="InterPro:IPR027791" /db_xref="InterPro:IPR027995" /db_xref="InterPro:IPR029044" /db_xref="UniProtKB/Swiss-Prot:A8Y1P7" /protein_id="CAP38817.1" /translation="MAFRHLASAKLKTFFVLCAALLLVHAMIYKVPSLYENFSIGSST LIADVDAMEAVLGNTASTSDDPFDVWNSTFSPISEVNQTAFMEDIRPILFGDANETRP HCNQTPPHLVGPIRVFLDEPDFATLEKIYPETHPGGHGIPTECVARHRVAIIVPYRDR EAHLRIMLHNLHSLLAKQQLDYAIFVVEQVANQTFNRGKLMNVGYDVASRLYPWQCFI FHDVDLLPEDDRNLYTCPIQPRHMSVAIDKFHYKLPYSAIFGGISALTQEHVKAINGF SNDFWGWGGEDDDLATRTSQAGLKVSRYPAQIARYKMIKHSTEATNPVNKCRYKIMGQ TKRRWKTDGLSSLKYKLVKLELKPLYTRAVVDLLEKECRRELRRDFPTCF" CDS complement(join(<930890..931011,931048..931362, 932449..933331,933980..934170,942528..942732, 943773..944093,944734..944955)) /gene="CBG22166" /locus_tag="CBG_22166" /standard_name="CBG22166" /product="Protein CBG22166" /note="contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase) , PF00271 (Helicase conserved C-terminal domain) , PF04851 (Type III restriction enzyme, res subunit) contains similarity to Interpro domains IPR011545 (DNA/RNA helicase, DEAD/DEAH box type, N-terminal), IPR006935 (Helicase/UvrB domain), IPR000629 (RNA helicase, ATP-dependent, DEAD-box, conserved site), IPR014001 (DEAD-like helicase), IPR001650 (Helicase, C-terminal)" /note="Predicted" /db_xref="GOA:A8Y1P8" /db_xref="InterPro:IPR000629" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014014" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8Y1P8" /protein_id="CAP38818.1" /translation="MEIDESDDEQVNDEAVTVRKKKKIANAAEEFAQDFVFESDSLYV DRETEDLQKYLKKQNPTSLDEKIAEMRKLKNTGKAVIVDNEADDVEINEDDDVQQLGG KETRDTVREKKKAGKSRKVADGDDFFSALIDGKSLDTNVNVSFEQMNLSRQILKACAG AGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRVL VLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLI DHLHNSPSFNLASIEVFLSLEKEKFRNSEIQESKNLKVLVLDEADRMLEEAFRDQMNE LIRLCAENRQTLLFSATMTEEIDELASMSLKKPVKIFINENTDTALKLRQEFIRIRAG RETDRESMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRI ESLSKFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAG RSISLVGEEERKLLKEIVNSNADRTLKQRLVAPEVVEAYRRRIDELEETIQQIDEEDR AEKELRIAEASMAKTQQALEAVENGGAVQEKRVWMMKESQVEKQRKRDEKRQMKIEAK KKAHAAKSPEDIAAEHEAAFHVRSAKRARLSKNRKIRAVVESTGNGGAKGKGAGGLQK KSNAKSSLRDIPLVNVGARGVQKSKTAFGGGKGFTSALASVSRKSVKAARHGPEDSKF QKARVAHRMKTKK" CDS join(934353..934461,935029..935180,935305..935689, 935734..936086,936313..936600) /gene="CBG22167" /locus_tag="CBG_22167" /standard_name="CBG22167" /product="Protein CBG22167" /note="Predicted" /db_xref="GOA:A8Y1P9" /db_xref="InterPro:IPR020846" /db_xref="InterPro:IPR036259" /db_xref="UniProtKB/TrEMBL:A8Y1P9" /protein_id="CAP38819.1" /translation="MGWGGKERGVSKSPNSFSTMNRREKSRHELALLASTGVYHTYDQ WTRSLIPFVQWNLQPNVGIDNFIWLTAISTSFTLIGTFFVARMIEVMGLRNSAMISSA FVILYQFLVCQFSNLYVYIFLQSLLLFNNMQMIIDAAILNLESEDGDYKKRTRLITRI MIPQSIGYALGPYCALQMIFFVTPSLEISQALCGFLAVFTLLPVIWNYFPDNPNTNLS LTPNFSSYFEVLKSDNVKLYALLLMMVTGPYTAYDSLVRNSMASSAIRDPNHMHNLFL TLGLTTILVNTVLLPKLQSTISTKALLSGSFSVLGASYLYLAVFHDLIHLFIGMPVQV AAATICIGELSSQLMGAIGKRKAGTAASVLRMSQLAATLLVPFVHGTLTAHHDVVSLC LMSAVLSGAAVGMIRKFGSSMVFSSEYLPGFSGKYE" CDS join(940501..941546,942154..942394) /gene="CBG22168" /locus_tag="CBG_22168" /standard_name="CBG22168" /product="Protein CBG22168" /note="contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domain IPR011701 (Major facilitator superfamily)" /note="Predicted" /db_xref="GOA:A8Y1Q0" /db_xref="InterPro:IPR011701" /db_xref="InterPro:IPR020846" /db_xref="InterPro:IPR036259" /db_xref="UniProtKB/TrEMBL:A8Y1Q0" /protein_id="CAP38820.2" /translation="MSFEKKQKVMFVLCLVFGLWHFATQWTTTLLSFLQWDTEEVMTI TDLGYIQAFGSLCNAFGALAAGQLADTLGAQSMFLLSAVFTAVYYSGISMARSWYSFF FLQVLRFGYQLDGTAEMYLATVTTESERTSALMRLTIPQVSWDSQLGIFMIPIHILSH FQAIAMFFGPIVGSKVAAWTSLRTSQFIVGFVLAGTMIPVVFFLLPTTHSIPRLASAR LRPQDYWHMISKNSALKEGLLIRALLISAYVCYEMISRNFLLRNYMHNTNESAYVLLT MAGSLLAVQFIVMPIVQRRASPKRLLQVSLVGLFISYLSAAFANSFEQMLMITAVQTA AYAVAYAESSTQITTAVELTDLGKATGLASMVQWLTHFILPIYASQLVEHLHYTFAFY TSAALSVFLFAYISVYGKETPNRSGSLLPSLSATNY" CDS complement(join(945637..945660,945715..945954, 946417..946670,946886..947153,947684..948099, 949603..949833,950273..950771)) /gene="Cbr-lin-65" /locus_tag="CBG_22169" /standard_name="CBG22169" /product="Protein CBR-LIN-65" /note="C. briggsae CBR-LIN-65 protein ;" /note="Predicted" /db_xref="GOA:A8Y1Q1" /db_xref="UniProtKB/TrEMBL:A8Y1Q1" /protein_id="CAP38821.1" /translation="MSDLLDEILLNIDATTANEVQLDDEQIAELLGDDDVAPVAPDAP EAADPEEVDPEEPAEVSDVEVLENVPEAPLEDDEGFDDIQEIDAEYANIDVPPPEDPL AAVREILAQHNMNLEEDSDGVEVMEEEGTSSGEDGKKNGDQEEVMIESDEGEGEGEAI EGDGEGTSTRKRAATNGTAPGAKRRRSGPSQPSLAARNSVIKAMTEILGSWEFQANRS NLKTLKDLHLTRFAYVSEQNQKQIIALKTEVLRLKGLLHDERQSHGQTLYALKELGMD AQKMRKQVEELSLMVTQPRCITIMDDVAPTAAQVEKYHREQNGREKQQQQQQSSSHQQ RQRDVYMSPQRQHQMRMQQDPMMRQRLEMNGYGRPEIEQRRRLHGERQIYQHQNTPQH YHNSPQVTGPQFPRARARTSTAAAAQALLRNVAIASGIPLPQPPVRVVIPPPGPGQPK WQQIPPPPVLMGHSDGIPNPDGPQKLIDCTRANDNIIKLHIPFVPVRLIISSGDSARL PSNPRCFSGMPHCPDLSIVITSSQADFRENWQIAGKINYEYLGDLDDTKIQIFVQVAS MKFSGINGIPNPDMPNAVIDWGISNSWGCKAKSHKFRVVFHHRQQIPMNDRITVMVAA RNENTGITQISPPVFMQLQ" CDS complement(join(951334..951650,952365..952698, 952756..952968,953018..953110)) /gene="CBG22170" /locus_tag="CBG_22170" /standard_name="CBG22170" /product="Protein CBG22170" /note="contains similarity to Pfam domain PF00682 HMGL-like contains similarity to Interpro domain IPR000891 (Pyruvate carboxyltransferase)" /note="Predicted" /db_xref="GOA:A8Y1Q2" /db_xref="InterPro:IPR000891" /db_xref="InterPro:IPR013785" /db_xref="InterPro:IPR027167" /db_xref="UniProtKB/TrEMBL:A8Y1Q2" /protein_id="CAP38822.1" /translation="MLPTRLLATRTYSTASNRFRVVEVGARDGLQAEKKFVPTEVKVE LIDRLSACGFSTVETTSFVSPKWVPQMADHNEIVKKHKRFNGVSYPVLVPNAAGLKNA LATGVVDEIAVFGAASDAFSLKNVNSNVEDSLKKLLEVTKIALENKIRVRGYVSVVVG CPYSGDVKPEVVARVAETLLEAGCYEVSLGDTIGVGTVKSVGKMLDTVLKSVPANKLA VHFHDTYGQALANVLVSIEKGIRAADSSIAGLGGCPYAKGATGNLATEDLLYFLKGNG FETGVDLEKVVETAKWFNSAAGYDKWSRVGRAISNKMEAAKC" CDS join(953579..953647,953697..954023,954075..954483, 955325..955633,955744..956006,956050..956106, 956635..956859) /gene="Cbr-mppa-1" /locus_tag="CBG_22171" /standard_name="CBG22171" /product="Protein CBR-MPPA-1" /note="C. briggsae CBR-MPPA-1 protein; contains similarity to Pfam domains PF00675 (Insulinase (Peptidase family M16)) , PF05193 (Peptidase M16 inactive domain) contains similarity to Interpro domains IPR011765 (Peptidase M16, N-terminal), IPR007863 (Peptidase M16, C-terminal)" /note="Predicted" /db_xref="GOA:A8Y1Q3" /db_xref="InterPro:IPR007863" /db_xref="InterPro:IPR011249" /db_xref="InterPro:IPR011765" /db_xref="UniProtKB/TrEMBL:A8Y1Q3" /protein_id="CAP38823.2" /translation="MSANTHWQKLRHIADRLALCNILMLLQKSISHMRRCRNIATTLR NHREIAQKLPLSVPLPLKNPEGVKVIPKGSPPIGRNSRVTKLENGLRICTEDTYGDFV TVGVAVESGCRFENGFPLGISRVVEKLAFNSSENFEGRDDIFAQLESNSGIVDCQSTR DTMMYAASCHRDGTDSVMNVIADTIFRPTIDETGLEQAKMTAHYENIDLPTRIEAIEI LLTDYIHQAAFQHNTIGYPKYGMGSMDRIRVSDVYGFMSRAHTPERMVVGGVGIDHDE FVSIVTRHFDQKNSIWNRKSTLLPPKIPEIDISRSQYTGGEVRMQKDLKPLTIGKPYP LLAHVVLGLEGCGYKDEDFVAFCVLQSLLGGGGAFSAGGPGKGMYARMYTELMNRHHW IYSAIAHNHSYSDGGVFTVTASAPPDNIHDALILLVHQILQLQQGIDPTELARARTQL RSHLMMNLEGTERGNSQRSMRRELVSILCASTEFKSLFALKRCLKRVFFAEKVTNEDI LRVTERLLSSKPSLVGYGDIETLGNYRSLDQALAKRDLKYLFKN" CDS complement(join(956978..957062,957116..957201, 957271..957357,958160..958359,958406..958522, 958583..958644,959934..960103,960150..960245)) /gene="CBG22172" /locus_tag="CBG_22172" /standard_name="CBG22172" /product="Protein CBG22172" /note="contains similarity to Pfam domains PF00097 (Zinc finger, C3HC4 type (RING finger)) , PF02825 (WWE domain) (2)contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR004170 (WWE domain), IPR017907 (Zinc finger, RING-type, conserved site), IPR018123 (WWE domain, subgroup), IPR018957 (Zinc finger, C3HC4 RING-type)" /note="Predicted" /db_xref="GOA:A8Y1Q4" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR004170" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR017907" /db_xref="InterPro:IPR018123" /db_xref="InterPro:IPR037197" /db_xref="UniProtKB/TrEMBL:A8Y1Q4" /protein_id="CAP38824.1" /translation="MAPATSFGKTEWFQTSKKEGNSRFIWIYGNPTIKSGCYEFHPDL QDHIEEAYLAEKKTCKVSVFGTVWTLDLKNMKESSKTSKAKPEIRRVRTSQLKKLKCI GVAGAKYAKTSGFQQSDDICAVCYDPSTIPTRIEKCGHIFCFLCLKTNYILGNGCPTC RGAIPYSMFQKPIRADIDFHIECPLEYAVDCAKMLGPDPKKSERESSEKYYWLYQSNH SGWFRYDPKTEYFIEENFKRKNKSCEVYICGLKMTINFKRSTQEIQGKIRKRKIKRIA ASDVYKQHDLKGIAGIRTLNYPIS" CDS complement(join(961128..961209,962923..963035, 963626..963712,963808..964034,964080..964199, 964242..964303,964356..964525,965311..965421)) /gene="CBG22173" /locus_tag="CBG_22173" /standard_name="CBG22173" /product="Protein CBG22173" /note="contains similarity to Pfam domain PF02825 WWE domain contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR004170 (WWE domain), IPR017907 (Zinc finger, RING-type, conserved site), IPR018123 (WWE domain, subgroup)" /note="Predicted" /db_xref="GOA:A8Y1Q5" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR004170" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR017907" /db_xref="InterPro:IPR018123" /db_xref="InterPro:IPR037197" /db_xref="UniProtKB/TrEMBL:A8Y1Q5" /protein_id="CAP38825.1" /translation="MAPRTKKKAAPKKKAPIKKKEVTEDNSSYVWIYGEPTIKEKCYE FHKDLQEHIEKVFLDKKPNCKVYIYGKIWVLDFAKMTEHNAQKQVTWPIKRVRTSQLK RLKCRGIAGTDYEVKPAHGFWQDDDHCNACYYKSTIPTRLSCGHVFCFQCLRCNWIHG RDCPTCRMQYSREMFVRPTRSDIDFHMECPPGYQEDCAGVLGPAPKTSARRNPPRGHG GEPEKYYWIYEGRHRPGWFRFDPRSEYMIEESFKRKKKTLLIYICTFRMTINFQKMTQ TSQSHRVRESESFLTNSRAIKRIPAADYKKYVLRGIAGIRSLAYPID" CDS join(971759..971987,972393..973490,973542..973739, 974602..974745,974800..974999) /gene="CBG22177" /locus_tag="CBG_22177" /standard_name="CBG22177" /product="Protein CBG22177" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1Q7" /protein_id="CAP38827.1" /translation="MWKRSSILLLLLVGASWAFVPDDPEFTFFESDGPVEVAKRFLDR IKRSVDSRDVAVISGLFNPGFEFNGCKGDYNKAKVVGILSHLSAGTSFSMTLQSAVTL GTDQIKYSVSVSGFGPSPIIAEFILNIHDQQLHSGSIPACQHLMGFFRKFIASIPEEQ VKAFLDRLKAAITSRDSTALLNLFQPDFKFIGCKATYDRDQSVEMFMQIPAEAYLAYT FKSVQDLGDSIKTVVIAEGFKATIHVEFEFVLSKKDQKIEKASMVCPKRRRLVTAKYG IKGQIDNFLDELTKDIETGNAILIGTHFDEGFEYEGMRGTYNKRQLVGILSRLPHNHQ FSFKLHKIGSLQKDNKVDIGVTVTGLGPAPFETSFVLDTRIFSLKSGKYLKNEIGSVP RRKPLGTAEEMVHDFLDRVTKATALKNYAEISGLFEDSFVFKGCRGKYTKEQVIKILG KLPAGTKFTINLMEVNDQESTVKYTVQIVGMGAMDMQAEFVLNKKTQKLVSGGIPLCQ DSQLDSNSIVEQFLAIMQPAVDARDGTKLASLLNDEFKFNTCNGYEDKAAAIAKITSA PSMFKISINFVSSRFLANGQIETVVDIISIMGRERTMFLLDLTKNVLVAGQLYKCP" CDS complement(join(975883..976091,976143..976571, 977621..977828)) /gene="CBG22178" /locus_tag="CBG_22178" /standard_name="CBG22178" /product="Protein CBG22178" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1Q8" /protein_id="CAP38828.1" /translation="MWTTPSILLLLLIGASWVSGYPPGDTQQIIWDYLNNTSNPALAS RDPVQIEKILYRSFLFRGCKAHYKKANAIKIIAAMPREIDLSMKVISTTWLPNDHIQT MLVVPKQLFNGNPDAQFEYCTHYNVWWGGQIPWCSLPFGYESDAVSEDVQEYLVGKSL PQEEGAPEDPKAVVQKFLGELKEVIDSKDSGRIGKLFDDNFLFKGCLGSYTKEDVIQK INALPAGVSMEFSLESAKWAIHGQIEYIVSIAGPGMDKIHAQFVYCPYTNVLKSGNVP KCASY" CDS join(979263..979299,979529..979601,981241..981455, 981500..981693,981763..981826,981935..982127, 982177..982279) /gene="CBG22179" /locus_tag="CBG_22179" /standard_name="CBG22179" /product="Protein CBG22179" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1Q9" /protein_id="CAP38829.2" /translation="MEVYKWIVGKATGTIWSLSQSEKWLVELDKDTGDTGKAKARTQS ENELILKTDGDNKEVEEEEDLKLTSRHSNQPIPIPMMNDDQGPSTSQSTSRNVKKVYK TKKRAEDTPPVKRGRPRKVKKEESPERLRSPSFDAPRPKRSCRAKSEAVVAQEEDEIV SDEEPLSSDTSYEVIYGHYVKVKNGWLHKDTGDTGNIWSLRQNENWMGTRYAHRSIIE LPVEIRQNVKVMLLRMIENYKEQMVPIGNNFDAELAQMREKCLLHRELSDVSSSTLRC LPATKMKLLKLRRIIK" CDS complement(join(985310..985420,985795..985926)) /gene="CBG22180" /locus_tag="CBG_22180" /standard_name="CBG22180" /product="Protein CBG22180" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1R0" /protein_id="CAP38830.1" /translation="MARGSDQGHTALSGVKTQTTSFSFALILSITILKFYETKFKTVL RYLRYLDDTLEIISNFRTFEYNLLDYFDQQADAENA" CDS complement(join(988414..988486,988530..988610, 988888..989147,989192..989280,989328..989354, 989456..989483)) /gene="CBG22181" /locus_tag="CBG_22181" /standard_name="CBG22181" /product="Protein CBG22181" /note="contains similarity to Interpro domains IPR010381 (Protein of unknown function DUF976, Caenorhabditis species), IPR016125 (Peptidase C15, pyroglutamyl peptidase I-like)" /note="Predicted" /db_xref="GOA:A8Y1R1" /db_xref="InterPro:IPR010381" /db_xref="InterPro:IPR016125" /db_xref="InterPro:IPR036440" /db_xref="UniProtKB/TrEMBL:A8Y1R1" /protein_id="CAP38831.2" /translation="MPNEKVIVTDELKAKGIDKIDLELHKITVAYEDVSKRVPDLWKE HNPDLVIHLGAHNVSKTIKFEQQAFADGYCSNDVNGCTPEGNRTTCASDEQCLKSCIN CDELVRDVTQRCGLDGEKQYGGLKVEKSEDPGRYLCGYSYFLSLHEDCSKSLFIHVPP FEGECTKEAIAEVIRETVKSILGYY" assembly_gap 990083..990092 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(991188..991216,991410..991502,991619..991718, 992674..993135,993183..993263,993311..993542, 994150..994210,994298..994389,994482..994619, 995512..995639) /gene="Cbr-dyf-5" /locus_tag="CBG_22182" /standard_name="CBG22182" /product="Protein CBR-DYF-5" /note="C. briggsae CBR-DYF-5 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8Y1R2" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="UniProtKB/TrEMBL:A8Y1R2" /protein_id="CAP38832.2" /translation="MSSAVKLADRYLMTKRLGDGTFGEVMLAKKIDTGDRVAIKRMKK KFYSWEEAMSLREVKSLKKLNHPNIIKLREVIRENDILYFVFEFMQENLYELMKDRDR YFPESVIRNIIYQVLQGLSFMHKNGFFHRDMKPENIMCNGTELVKIADFGLAREIRSK PPYTDYVSTRWYRAPEILLRSTSYNSPIDIWALGCIMAELYMLRPLFPGTSEMDQLFK IISILGTPNKDDWAEGYQLASAMNFRFQQVVATPMEQVVNTISKEGMKLMMDMMLWNP EKRPNANQSLKYKYFQVSEKLGAPVVSQPAPGITRKMSAASVKSDTKAMTAKAAKVKG LHWFRKRLSTTATTKSHRTPDPKPLAPSKTNETKPTAKEIYMSKSKYVPGQVSKDPHH HNQIMTTNGLTGTTKTTNFSAKKEGRTAVQTRFEYAYGYIPNFGAKPTNANNKSASPN HHSATSPNKLTNAGRVDWASK" CDS complement(join(996514..996627,996972..997232, 997286..997393,997442..997800,997949..998049, 998354..998671,998803..998924,998969..999029, 999336..999613,1000143..1000431,1000449..1000688, 1001534..1001813,1002955..1003392,1004439..1004629, 1004926..1005108,1005495..1005940,1006205..1006273, 1007032..1007196,1008155..1008268,1009370..1009478, 1012586..1012658,1012953..1013052)) /gene="Cbr-ppfr-1" /locus_tag="CBG_22183" /standard_name="CBG22183" /product="Protein CBR-PPFR-1" /note="C. briggsae CBR-PPFR-1 protein ;" /note="Predicted" /db_xref="GOA:A8Y1R3" /db_xref="InterPro:IPR011989" /db_xref="InterPro:IPR016024" /db_xref="InterPro:IPR021133" /db_xref="UniProtKB/TrEMBL:A8Y1R3" /protein_id="CAP38833.2" /translation="MHIQIIQKAPLFELGCSECSEKIQKYKLHCAIIEEGDGEQHMAP DGRGEEQRRGRRRQGSLLLPSFPTYSIQKKNYSYSYPSTEKARQSGVCYAALCQVISY KTIHSKQWIFDNFLPRFSQMLKDPTMHVRKLKTYSYNARNPSSSTTHNTNGRPLGNIS DELKKLQSALHIFGDLGRMFGQKFTEVFLVPHLITLSCDMTWAVRKVACEIFVKVAEC ASRSVRAEILSPNFVRLLNDPNKWVSFIAYQQLGPFIALFADGNITGLSLFEGQIIVR EPSARGAEEIQARHNKIDQMMGIFLGSEKYDKLPPNTWLPEADATEDFEYQLAMSEAL KEANTVAATTASSKTPKRGERVMDSVISGINKMFGPFERSSPKSKEVEKIAATFSSPS KNRSPLSLHGAVSLMDKWSKRSNPNNPQRFPVFDPTNTNTTSSSGASSSTDAISTSSS PKEEKMDQSGGGTGIAAKCNSTDDLTKLGLEDDAPPPPPPSTPSEEEESATTTNSEEE CSRTTSPRGRRIATSAWSKLDIRQKLFLRRLGALPPSDGGKKASLSPRLKSPTRSAVS PSKSNILMVSRRRTANIFDFADPVDLTKRLGKMSAVAAVESTVEKADEPDEKAKDPSK EGGIEYMNTSSRDTFNTKENDGDREADANEEDSDDDSDDFDKSFVEAEHLMEEDAPLT IDVKTKTESVSMVDLTEQKAQREPVSNEFSLTFWSSNYAISSIEDELKPFGSSSSFTN SPTSNSYLESRFDVMKPQSVSPRARSQSFGVNGSPIALSPRRYELEECRQTYIPKLPS SPFLSKANSTSEEPLLASSPPTNALLDTSKSDDSIVMLNTEEKEKLGILDIDEMNMSI SSDNSSMYTEAGAIGESDVSLTSLDQQVAFPHVPADLVESYMKVMGPNGHTSGSVATG DESLCAEIYRHCAHNFPAICYTLGRAAWPRLNLVFRKLAMDEQARVRQSISYSIHEIA NMLGQQIADEDLLPVFYDLRNDQNAEVRAGILTHLYDFVKCLSLDKRDEMILSLPQFF PIGAQPGNQAQNGDWRSRFELISQLSKLCSLYSIQDVNLHMSGIALTLADDRVAEVRR EAVMLVSTIVGALVSEEWEYLQAERDIVNGHVDLKGSKKTGSGGYTYLSEQFVDDIIS SFAKTQKWTRRQTFCFICAQILRDKQCNGIQFRYFFSVPLLNLVHDKVANVRLASCEA MSVWRKTLIAARSSRSPYSSPSSTEGASIRRDINLVSDMMVKLTTDSDIDAAFLAKKC QGLTDDQQPVDVEARTNRMREREQAQFQNVVMHDEKGNLVRCVGKTVIAVIKEVPAPK ALISVPVETAPEKEAPLQSMDEFDCEIMNQTETTITTPPEVRAEVVQISEDQQLQDNT EVVDMEIEEEEEETQTLAVEMEKVQEEKKEVEEEQKEKKTTSEEVDVPMDPAPSLPQS PKSTTSESTTPSTPTTTNVIAIPITENATSPEDSDA" assembly_gap 1010214..1010952 /estimated_length=739 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1032779..1032808,1032934..1033160, 1033883..1034019,1034511..1034679,1035769..1035952)) /gene="CBG22188" /locus_tag="CBG_22188" /standard_name="CBG22188" /product="Protein CBG22188" /note="contains similarity to Interpro domain IPR013838 (Beta tubulin, autoregulation binding site)" /note="Predicted" /db_xref="GOA:A8Y1R4" /db_xref="UniProtKB/TrEMBL:A8Y1R4" /protein_id="CAP38834.2" /translation="MREILAGFIRVLTDFRIFWTFLALFLSIFAFFDVFWSPDFWKQS AGIMQKSGIFRHFFKSRLAPIQQLSDLYIDGEDETPPSLSSDTRPAPHWLDGPRDATV LPDIIASTYSDYTDEADYAMKQMLAVLETLTPTEETMELFESSLKAIAFRLPFDLILN EDNKTPNWNAIRQKLLSDSTRMLPVDSDTERPGLSNVQMSAVFDAIPFLFDAVACNHE LERFQNVLSMIVLIAMTGNSLSKFYRKLML" assembly_gap 1035424..1035591 /estimated_length=168 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1037871..1038098,1038499..1038881, 1040272..1040788,1041538..1041783)) /gene="CBG22190" /locus_tag="CBG_22190" /standard_name="CBG22190" /product="Protein CBG22190" /note="contains similarity to Pfam domain PF01139 Uncharacterized protein family UPF0027 contains similarity to Interpro domain IPR001233 (Uncharacterised protein family UPF0027)" /note="Predicted" /db_xref="GOA:A8Y1R5" /db_xref="InterPro:IPR001233" /db_xref="InterPro:IPR027513" /db_xref="InterPro:IPR036025" /db_xref="UniProtKB/TrEMBL:A8Y1R5" /protein_id="CAP38835.2" /translation="MPRTFEEECGFINRLTETKFQIVKGFVPNMNVEGRFYVNSRLEQ LMFDELKFSCDGQGIGGFLPAVRQIANVASLPGIVGHSIGLPDIHSGYGFSIGNIAAF DVGNPEAVISPGGVGFDINCGVRLLRTNLFEEDVKPVKEQLTQSLFDHIPVGVGSRGA IPMLASDLVECLEMGMDWTLREGYSWAEDKEHCEEYGRMLQADASKVSMRAKKRGLPQ LGTLGAGNHYAEIQVVDEIYDKHAASTMGIDQEGQVGKNYFAGMAAAANFAWVNRSCI TFCVRNAFQKTFGMSADDMDMQVIYDVSHNVAKMEEHMVDGRPRKLCVHRKGATRAFP AHHPLIPVDYQLIGQPVLIGGSMGTCSYVLTGTEQGMVETFGTTCHGAGRALSRAKSR RTITWDSVIDDLKKKEISIRIASPKLIMEEAPESYKNVTDVVDTCHSAGISNKAVKLR PIAVIKG" CDS complement(join(<1043432..1043639,1044087..1044828, 1045012..1045237,1045700..1046002,1046937..1047030, 1047201..1047374,1047605..1047673,1057438..1057502, 1057505..1057591)) /gene="CBG22191" /locus_tag="CBG_22191" /standard_name="CBG22191" /product="Protein CBG22191" /note="contains similarity to Pfam domain PF00622 SPRY domain contains similarity to Interpro domains IPR003877 (SPla/RYanodine receptor SPRY), IPR018355 (SPla/RYanodine receptor subgroup)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1R6" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR001870" /db_xref="InterPro:IPR003877" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR013320" /db_xref="InterPro:IPR035774" /db_xref="UniProtKB/TrEMBL:A8Y1R6" /protein_id="CAP38836.1" /translation="MAFAGLADLRLFDNVSQYINTLAGEFSPDSHLHDHNCKCSIVDR LWCDYFGMGTCISREARARRKERKRINKRLREARNASSPRDHYHQPTSTSGGRFGHRS RSEGGNGDVRDDIKELIIETLEVIRTLVNNEQEPPQSLLKLNFIADEEKGWMLVVRAL IYTIPENDPLGPAVISLFLDECPLPSKESVQTLLISLGLSSEFVETKHLSPSWHKNMC IVLGSLAEKMAGTAAVTIFNENIRGYLMKMIGYGLSYFPPTYGKSLKEKNTHCVRMFA LLALEKFAQTRENQITICKMFTENSAIKHPLLKMEEYLKNEDVVRYWHAKQEGFCAQW ALDNIFILPNRPYSYETCETSQINAMLNHEDVSEYLKIGPDGLEARCDVSSFESVRCT FEVMDGVWYYEATVLTSGVMQIGLATKRSRFLNHEGYGIGDDASSVAYDGCRQLVWYN AKSQKHEHDNWQPGDVIGVLLDIPRGEVQFLLNGVALKEPNTEFLSNRQPSEGVFAAA SFMSFQQCRFNFGASRFKYTPGRKFRCFNDYGQLTTAQRTIIPRRVRLEQLEKEHIPD DYCTICFAAPASTKLTPCNHDGFCPDCCNMMDCCPLCRTPIVERVPMKTNNNKFEAFR SPSFTSGLQRVNSQRKSIRATSAAVQGAGDTV" assembly_gap 1058325..1064789 /estimated_length=6465 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1072938..1073062,1073501..1073684, 1073736..1073843,1073902..1074137,1074789..1074971, 1075282..1075366)) /gene="CBG22193" /locus_tag="CBG_22193" /standard_name="CBG22193" /product="Protein CBG22193" /note="contains similarity to Pfam domains PF10230 (Uncharacterised conserved protein (DUF2305)) , PF12697 (Alpha/beta hydrolase family) contains similarity to Interpro domain IPR019363 (Protein of unknown function DUF2305)" /note="Predicted" /db_xref="GOA:A8Y1R7" /db_xref="InterPro:IPR019363" /db_xref="InterPro:IPR029058" /db_xref="UniProtKB/TrEMBL:A8Y1R7" /protein_id="CAP38837.1" /translation="MGADLSDEMLEIPANKENENRVVILMIPGNPGNEGFYAHFGREV LRNLLARDAETQRNEKNEYLFYTVSSLNHVRMPDHLNSDGEHRNHDRISLEEQVSHKL AFCKELLPRGKQLYVLGHSIGSYMMLRILPEVILEGFHVAKAVGLFPTIVNMATSPNG RRLQGTLATLNHHDWLTKSICWWVDYLPSFVKKFLVGLNLRHPNTPPEIVDAAVELVH LDVFRNIVHMSNDELDIVLDLDERLMEKQDMVHFYYGLKDGWCPVEHGYSMRERLGDG QVTLDEHDCEHAFVISEGDIMAKNVVKYFD" tRNA complement(1073170..1073241) /gene="CBG28714" /locus_tag="CBG_28714" /standard_name="CBG28714" /product="RNA transcript CBG28714" /note="C. briggsae predicted tRNA" CDS complement(join(1076067..1076289,1076634..1076815, 1076978..1077046)) /gene="Cbr-ncbp-2" /locus_tag="CBG_22194" /standard_name="CBG22194" /product="Protein CBR-NCBP-2" /note="C. briggsae CBR-NCBP-2 protein; contains similarity to Pfam domain PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) contains similarity to Interpro domain IPR000504 (RNA recognition motif domain)" /note="Predicted" /db_xref="GOA:A8Y1R8" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR027157" /db_xref="InterPro:IPR034148" /db_xref="InterPro:IPR035979" /db_xref="UniProtKB/Swiss-Prot:A8Y1R8" /protein_id="CAP38838.2" /translation="MVFDPRTLDQPKDISAYRDQRYQGSVRDQELALRTSCTLYVGNL SYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQNISNTR MDDRVIRADWDAGFVEGRQYGRGKHGGQVRDEYRKDYDPERGGYNRAIAQKSMVE" CDS join(1078580..1078961,1079232..1079446) /gene="CBG22195" /locus_tag="CBG_22195" /standard_name="CBG22195" /product="Protein CBG22195" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1R9" /protein_id="CAP38839.2" /translation="MKAPNFPADLLKLLSDPSSQYTFTLKSAQLVEPYIEFNVEIMDH GKAVFEVKSVLNESKNRLERANQVGCRRKRISRSVPEPVEMDPVGVQYVRELNGAVRA GNEQLISVLLAPSFVFKGCKKTYDRAKFLDLLFKHRGNSKFFIAIVATENNGQKIKMI SGEVGNPYKSIKGTFDKQMNRMESAEEAFCKEYQKREF" tRNA complement(1078995..1079066) /gene="CBG28713" /locus_tag="CBG_28713" /standard_name="CBG28713" /product="RNA transcript CBG28713" /note="C. briggsae predicted tRNA" CDS complement(join(1079805..1080016,1081846..1082376, 1082432..1082689,1083627..1083846)) /gene="CBG22197" /locus_tag="CBG_22197" /standard_name="CBG22197" /product="Protein CBG22197" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1S0" /protein_id="CAP38840.2" /translation="MKHVFILLNVFWIWIPGLSEAFLFPESEDISMIFATGFLHRMRM AICVKDKFKLGQMFYDEFEFDGCEGQYGKATVIDMLLYNPDFSKLEIHFNTSHFVNGN YIKSTVVLRGIGSEDVTADFVLLQDKINVWGRSGGWRLAYGKLHNCHSGQRKLTYTRE SYLPPSDDSSHLVVERFLQRMDEAINSKKKHKLEQLFLDEFKFYGCKGHYDKVTVIQT LLYSPATSQLEVHFNSSHFINYNVDIQYTVVVRGIGSEDVVAEFILIRDNIGSFWRLG SGRQPSCPSRKFAAFDDPSEVLTAFLERVRRTIEMKDVYKIVNLFEMDFEFRGCKATY NRDQIASILLKIPTGTKFSFTSDSYEDHGNTYSYRVTTSGIGGSNWVADFVWNKSTEK LERGSVPYCSKGRV" CDS join(1084169..1084289,1084420..1084553,1084683..1085073, 1085464..1085677,1086013..1086113,1086747..1087112, 1087190..1087227) /gene="CBG22198" /locus_tag="CBG_22198" /standard_name="CBG22198" /product="Protein CBG22198" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1S1" /protein_id="CAP38841.1" /translation="MVENFLRTFVSSLESQDPMIIDGLLTDSFVFKGCKGHYDKGPLG AEMCAEVREAVCLVVCALALTLQMLISRLPVILEMLYLDKNIAPTVAKKIPEQSVDAL SQLPLGTNFTLTLTSIEDNGYSIRYGIIITGFSRFPIDAEFVLCKRSQQLELGIIKTC TGDSNGSVQKDSLESMVRRFLDRVERSIESKDVSIISGLFKPDFKFMGCRGTYSKAQV VGILQQVPAGSQFKFNLKSVEDLGFTVKYTVTVTGFGMSEIEMAFLFGRTAQQLERGF MVKCPGHQNFIRVDRSLKSRDVSNISGLFEPGFMFKKCQGNYDKNQTINLLTHPNFDP NRFLAIYKSVQSMGPSSIEFKAMVFGFRPNYIEATFSLNKKFQQLEWGVILEPQCKVL RTDPRYSVEEKGLRLITRFASALESRDASRIYGLFEEDFAFKGCKGIYNREPKMVDLG ISET" CDS complement(join(1088092..1088699,1089247..1089508, 1090466..1090567)) /gene="Cbr-pghm-1" /locus_tag="CBG_22199" /standard_name="CBG22199" /product="Protein CBR-PGHM-1" /note="C. briggsae CBR-PGHM-1 protein; contains similarity to Pfam domains PF03712 (Copper type II ascorbate-dependent monooxygenase, C-terminal domain) , PF01082 (Copper type II ascorbate-dependent monooxygenase, N-terminal domain) contains similarity to Interpro domains IPR000323 (Copper type II, ascorbate-dependent monooxygenase, N-terminal), IPR000720 (Peptidyl-glycine alpha-amidating monooxygenase), IPR014783 (Copper type II, ascorbate-dependent monooxygenase, histidine-cluster-2 conserved site)" /note="Predicted" /db_xref="GOA:A8Y1S2" /db_xref="InterPro:IPR000323" /db_xref="InterPro:IPR000720" /db_xref="InterPro:IPR008977" /db_xref="InterPro:IPR014783" /db_xref="InterPro:IPR014784" /db_xref="InterPro:IPR024548" /db_xref="InterPro:IPR036939" /db_xref="UniProtKB/TrEMBL:A8Y1S2" /protein_id="CAP38842.1" /translation="MPRRLHLFLAISIATWHFSDATTSQIRMPGVVPEADSYLCTSLE LSDQENYLTGFKALTTKGTAHHILLFGCEEPGSDELVWDCGEMNKPNDEMPRAPTCGS KPAILYAWALDAPPLELPKDVGFQVGGYSNIRHLVMQVHYMHSKEEPDETGLEITHTE EPQPKLAATMLLVTGGTLPANKTESFETACMIEEDVVMHPFAYRTHTHRHGKEVSGWL VKEDQSQEDHWKLIGRRDPQLPQMFVPVEDGSMTIQQGDMVTARCVMANNEDRDIPMG ATGEDEMCNFYVMYWTDGEVMRDNTCYSPGAPNYRWGREAALNHIPK" CDS complement(1091452..1091898) /gene="CBG25186" /locus_tag="CBG_25186" /standard_name="CBG25186" /product="Protein CBG25186" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IM11" /protein_id="CAS00941.1" /translation="MQKNNQSKKPSSKNPSPGGASGRPKKEKPSKDTKKSKNLVTGKR TPSNTKVKTLTTSVSPTDAGGGGTRTAEEAKSADTKPKKEMTRKRSVTPAPREKELKL EPTQQDEPEKKEEPAGVQSGMDVIVKDDKKIVKMDDGYEDFGPGAA" CDS join(1092936..1093256,1093304..1093426) /gene="CBG22202" /locus_tag="CBG_22202" /standard_name="CBG22202" /product="Protein CBG22202" /note="Predicted" /db_xref="GOA:G2J723" /db_xref="UniProtKB/TrEMBL:G2J723" /protein_id="CAP38843.1" /translation="MADPYDPANPGNDPLRSADDNYQNLGGLPYANMDPNAPHGTDVP PPPTAQAPPLVQESDKAPSSKKPVKGGNDMVGSGVQELPDSDPSDSRNYRVDKPKVKK LKKKIKRVKIVYWIMIVLWVIALVLFVLIHLNTFGIHVLPFLQKD" assembly_gap 1094220..1097215 /estimated_length=2996 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1098009..1098131,1098179..1098499)) /gene="CBG22203" /locus_tag="CBG_22203" /standard_name="CBG22203" /product="Protein CBG22203" /note="Predicted" /db_xref="GOA:G2J723" /db_xref="UniProtKB/TrEMBL:G2J723" /protein_id="CAP38844.1" /translation="MADPYDPANPGNDPLRSADDNYQNLGGLPYANMDPNAPHGTDVP PPPTAQAPPLVQESDKAPSSKKPVKGGNDMVGSGVQELPDSDPSDSRNYRVDKPKVKK LKKKIKRVKIVYWIMIVLWVIALVLFVLIHLNTFGIHVLPFLQKD" CDS join(1099109..1099231,1099305..1099449,1099507..1099628, 1099681..1099789,1100621..1101582) /gene="CBG22204" /locus_tag="CBG_22204" /standard_name="CBG22204" /product="Protein CBG22204" /note="contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domain IPR001680 (WD40 repeat)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1S5" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:A8Y1S5" /protein_id="CAP38845.1" /translation="MDHFMPQIFWHDRQGLLSVDLHHSLRSGNKYRLVTASVQKEVRV WEFEFEVGLDPKTQEQKPQLTVGFLANLAFHNQAINQVKFSPSKEHDLLASGDCEGRI TVWKLSDQPAPPPQDEMPTNKENWVRHKVLNHNSDVNALCWNPGGTQIASVSNDHTLA VHDALTGKRLFVASNFRSPNGVCWDPMGKYIATMSPDRRMDLVDAVKGTRLKHFSSAT LPPRVIPSANGDLHLEEKVHKLFHDDQLFSFQRALSFSPNGEYIAAPCAHLELGSSDL YGTYFFKREDLGTKDLPKAFYPAPKPTFLVRFSPITFSLIPGTKENHLGLPYRYVWIS LNKDAIYFYDSQHNYPVAVVDNIHLNALTDATFSSDGRVLVVSSLEGYCSFVRINISV WGEIQTEVVPTCTSPMLIEEKKQKKRKSMVAGGSGEQPEVEKKTSPVAPKTPKTATTP LTKFFKKNSEAPQPVASSSATPSSSKKRIQLVSLDQ" CDS complement(join(1102123..1102288,1102481..1103131, 1103177..1103478)) /gene="CBG22205" /locus_tag="CBG_22205" /standard_name="CBG22205" /product="Protein CBG22205" /note="Predicted" /db_xref="InterPro:IPR001810" /db_xref="UniProtKB/TrEMBL:A8Y1S6" /protein_id="CAP38846.2" /translation="MKLFKFPYLVQQEILHNFEYKNLFLISFVSKNMKKLIRSSQIER FKSTNSIVYDSNEQLVCIPFKNTLDRILQVSDRFNHYVYFKNSYFPLDVAGKIIYFRI CDISRCLVAFCHPWETAIQSIHNYFLDLFGSSVEYRWRTWNQPEFFIPQLQNLSALSI SCGVKLVNLKKVQDYLSSSSPVFKRVDLRTRYLTFQNHYGLFYSLIYGDQHTTEELFP PESNLYQAESIGVTQRELATPAVLRHFQGRQAFIKCDMCKDQDLIEFVNRWKSGEAFQ KLEYLTIGVCFNEISQNQILNAIGAKYIDAAKRPPRHTLPKVHIKFHGANPNTPKILS HAYVVRESDNRVASVLIQGRIFKFGVWNKTEQEFLKMV" CDS join(1106636..1106946,1106993..1107622,1107835..1108003) /gene="CBG22207" /locus_tag="CBG_22207" /standard_name="CBG22207" /product="Protein CBG22207" /note="Predicted" /db_xref="InterPro:IPR001810" /db_xref="UniProtKB/TrEMBL:A8Y1S7" /protein_id="CAP38847.2" /translation="MKLFKFPYLVQQEILHNFEYKNLLLLSFVSKNMNKLIKSSQIAR FKSVNFIEYGSGRSDEPLVYIPHKNTRYTILKLTGPFENPARHENDYFTLNISGKIVD VRVCIFHGLVVFSRSWEPVIKSIHNYLLNLFGSSVEYRWTTSTRTDLFEVFIPRLKNL SVLNTSCGENDMKTVDTYLLSSPVIKRIDFFIFCSLDRGFFSRCGYMPTEEPFPPESK LYQAQSIGVTQRELATPAVLRHYQGRQAFIKCERCENQDLIEFINRWKSGEAFRNLEY LEIEILISEVPQNRIFYATGTKYIDVTKRSPTHTLPKIFIDNGDDEPNTDPITSHAYV VRESDGHVASVQIQRDTFSFGVWDKTEEEFLRMVE" CDS complement(join(1109575..1109697,1110005..1110063, 1110110..1110161)) /gene="Cbr-nlp-12" /locus_tag="CBG_22209" /standard_name="CBG22209" /product="Protein CBR-NLP-12" /note="C. briggsae CBR-NLP-12 protein ;" /note="Predicted" /db_xref="GOA:A8Y1S8" /db_xref="UniProtKB/TrEMBL:A8Y1S8" /protein_id="CAP38848.1" /translation="MLRNSCVLVLLILVFVDVFATQSPTFDRQDRDYRPLQFGKRDGY RPLQFGKRDYRPLQFGKRSGGGSVVLEPIWEWQ" CDS complement(join(1110657..1110785,1111271..1111587, 1111646..1111772)) /gene="Cbr-emr-1" /locus_tag="CBG_22210" /standard_name="CBG22210" /product="Protein CBR-EMR-1" /note="C. briggsae CBR-EMR-1 protein; contains similarity to Interpro domain IPR003887 (Lamino-associated polypeptide 2/emerin)" /note="Predicted" /db_xref="GOA:A8Y1S9" /db_xref="InterPro:IPR003887" /db_xref="InterPro:IPR011015" /db_xref="UniProtKB/TrEMBL:A8Y1S9" /protein_id="CAP38849.1" /translation="MDVSQLTDAELRDNLRSHGVSVGPIVASTRKVYEKKLLKLAGNQ SSRHNDPSQVNGHIDQNEKDRSFSPMFAAVTADTPSKRTTRHSGAAVTTQQPSGSPAR RPDSDTDDDCEESMRYLTEEEMAADRAALRAAQLDNRKSSAFGMKQLLTILLVVMAGT FIYFLIQNGVADFIDPSYFTLSNKTDDDPI" CDS complement(join(1113392..1113502,1113533..1113577, 1113807..1113832,1114552..1114659,1114799..1115082, 1115136..1115264,1115310..1115527,1116770..1116897, 1118093..1118210)) /gene="Cbr-egl-30" /locus_tag="CBG_22211" /standard_name="CBG22211" /product="Protein CBR-EGL-30" /note="C. briggsae CBR-EGL-30 protein; contains similarity to Pfam domains PF00025 (ADP-ribosylation factor family) , PF00503 (G-protein alpha subunit) contains similarity to Interpro domains IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR000654 (G-protein alpha subunit, group Q), IPR006689 (Small GTPase superfamily, ARF/SAR type)" /note="Predicted" /db_xref="GOA:A8Y1T0" /db_xref="InterPro:IPR000654" /db_xref="InterPro:IPR001019" /db_xref="InterPro:IPR011025" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8Y1T0" /protein_id="CAP38850.2" /translation="MACCLSEEAREQKRINQEIEKQLQRDKRNARRELKLLLLGTGES GKSTFIKQMRIIHGQGYSDEDKRAHIRLVYQNVFMAIQSMIRAMDTLCIQFGDQSEEL QEKAAVVREVDFESVTSFEEPYVSFIKELWEDSGIQECYDRRREYQLTDSAKYYLSDL RRLAVPDYLPTEQDILRVRVPTTGIIEYPFDLEQIIFRMVDVGGQRSERRKWIHCFEN VTSIMFLVALSEYDQVLVECDNENRMEESKALFRTIITYPWFTNSSVILFLNKKDLLE EKILYSHLADYFPEYDGPPRDPIAAREFILKMFVDLNPDADKIIYSHFTCATGAFGRN LRIETDNVRPRERNPKNMRKPKTSKFSDTENIRFVFAAVKDTILQHNLKEYNLV" CDS complement(join(1119269..1119385,1119763..1119900, 1119950..1120105)) /gene="Cbr-rpl-27" /locus_tag="CBG_22212" /standard_name="CBG22212" /product="Protein CBR-RPL-27" /note="C. briggsae CBR-RPL-27 protein; contains similarity to Pfam domain PF00467 KOW motif contains similarity to Interpro domains IPR018262 (Ribosomal protein L27e, conserved site), IPR005824 (KOW), IPR001141 (Ribosomal protein L27e)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1T1" /db_xref="InterPro:IPR001141" /db_xref="InterPro:IPR005824" /db_xref="InterPro:IPR008991" /db_xref="InterPro:IPR018262" /db_xref="InterPro:IPR038655" /db_xref="InterPro:IPR041991" /db_xref="UniProtKB/TrEMBL:A8Y1T1" /protein_id="CAP38851.3" /translation="MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIA GIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKANINKEALK APTKKRKALVEVKSKFEERYKTGKNKWFFTKLRF" CDS complement(join(1120251..1120810,1120858..1121500, 1121543..1121732,1121779..1122053)) /gene="CBG22213" /locus_tag="CBG_22213" /standard_name="CBG22213" /product="Protein CBG22213" /note="contains similarity to Pfam domain PF01926 50S ribosome-binding GTPase contains similarity to Interpro domain IPR006073 (GTP binding domain)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1T2" /db_xref="InterPro:IPR006073" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR030378" /db_xref="UniProtKB/TrEMBL:A8Y1T2" /protein_id="CAP38852.2" /translation="MTKRRASNKKPTGLNKSLGNSLSNDREKTRKSHQRAKYDGNEIE NPAFMEHEVNHYIDSVTDETSLEEFLAKAELAGTEFTAEKEQFKIIEKNSAIVVPTRL DYRANLELQKENEHRLRIPRRPAKELWENMDELTRLENDVFLQWRSDLSELQEVDGLV LTPFERNPDMWRELWRVIEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLV NKADLLKPDQLASWKEFFKKENINVIFWSAMDDVLETITEDGEESAVPSTSTSDMFVT NKDELIAKFKELGHVSDEPSAKPVMVGMVGYPNVGKSSTINKLAGGKKVSVSATPGKT RHFQTIHIDSQLCLCDCPGLVMPSFSFGRSEMFLNGILPIDQMRDHFGPTSLLLSRVP VHVIEAMYSIMLPEMENPSAINLLNSLAFMRGFMASSGIPDCSRAARLMFKDVVNGKL MWAAAPPGVDQEEFDRLSYPERKNRDIGRVQMEKLAKLQLLEGDELKGSQFDSQHFAG NIGVAHVRDSKALPQRLGSVVPTVPVQANGKKHFKGKKDKLRRIYNE" CDS 1122750..1123004 /gene="CBG25187" /locus_tag="CBG_25187" /standard_name="CBG25187" /product="Protein CBG25187" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IM12" /protein_id="CAS00942.1" /translation="MIQLLRLNAPLIQSIRHNCPWHRNSFRPCFFPYKMQEKLNVDTV EKRTETRGGRLMLMRRILREQKFLGYVTKPADSKKISYPL" CDS 1127234..1127638 /gene="CBG22215" /locus_tag="CBG_22215" /standard_name="CBG22215" /product="Protein CBG22215" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1T3" /protein_id="CAP38853.1" /translation="MIITERRKPKKRKKNWIEVQYFFKRNGGRKELLRYEVDEYAASL GVRIVRLPPYHCQFSPIELVWHQLKDYLRNSGKTSDKLDVVRERAINYLKNKSESEIL FTYEHVKDIEDGIKCVMEIDEKDSDDSDSDTD" CDS complement(join(1130982..1131144,1131197..1131528)) /gene="CBG22216" /locus_tag="CBG_22216" /standard_name="CBG22216" /product="Protein CBG22216" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1T4" /protein_id="CAP38854.1" /translation="MTVTTTTEPFDPGSRMYEAESLKLDQFEHNVPEVLRHFQGRQAF LKILRFDIPDLIKFVNEWKSGEGFQKLEYLKIEVLTDYIPPTQVLRGVMEKRIDRSKK RLAHTLPKVFIDDKEKPNTEPIISPTYVVRESDNRVASILIQNSTFSFGVWDVTEEET FLKF" CDS join(1132412..1132514,1133770..1134142,1135990..1136242, 1136382..1136577,1140256..1140602) /gene="Cbr-tag-96" /locus_tag="CBG_22217" /standard_name="CBG22217" /product="Protein CBR-TAG-96" /note="C. briggsae CBR-TAG-96 protein; contains similarity to Pfam domains PF08544 (GHMP kinases C terminal) , PF00288 (GHMP kinases N terminal domain) , PF10509 (Galactokinase galactose-binding signature) contains similarity to Interpro domains IPR000705 (Galactokinase), IPR006206 (Mevalonate/galactokinase), IPR019741 (Galactokinase, conserved site), IPR019539 (Galactokinase galactose-binding domain), IPR006203 (GHMP kinase, ATP-binding, conserved site), IPR006204 (GHMP kinase), IPR013750 (GHMP kinase, C-terminal)" /note="Predicted" /db_xref="GOA:A8Y1T5" /db_xref="InterPro:IPR000705" /db_xref="InterPro:IPR006203" /db_xref="InterPro:IPR006204" /db_xref="InterPro:IPR006206" /db_xref="InterPro:IPR013750" /db_xref="InterPro:IPR014721" /db_xref="InterPro:IPR019539" /db_xref="InterPro:IPR019741" /db_xref="InterPro:IPR020568" /db_xref="InterPro:IPR036554" /db_xref="UniProtKB/TrEMBL:A8Y1T5" /protein_id="CAP38855.2" /translation="MNAVTDEQLHEQFVKTYGIEPEIRVTCPGRVNLIGEHIDYHDYG VFPMAIDASTVILAARNSTNNIVFSNFDPKYTSWESPIPCPWQGSSSPKWSDYLLCGW KGILDFEKSEQFGISFLLYGTIPPSSGLSSSSSLVCVSALATLCLIVQGDPFQHISRE NFAHLCAKSEPLIGTLSGGMDQAAEVLASEGTALRIDFNPLRSKNIELPENAVFVVVH SNTELNKGATSHYNERVIEGRIVAQILKREFSLSTPSFRLKDIQTLSGKSFEEILKIV EEIIPEELTKDQVIELIGNDKLEECLTENTRKFTNFKLRSRARHVFSEAHRVELFESA CESKDIKQMGVLMNASHRSCAIDYECSCEELDAICELYTKHGALGARLTGAGWGGCAV VLMAADDVANIEKLPSLFVSKPGQGIRVHRF" assembly_gap 1132727..1133247 /estimated_length=521 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1142501..1142638,1143232..1143537, 1143898..1144621,1144688..1144732,1146279..1146366, 1146671..1146929,1148163..1149111,1151414..1151592)) /gene="Cbr-tub-2" /locus_tag="CBG_22218" /standard_name="CBG22218" /product="Protein CBR-TUB-2" /note="C. briggsae CBR-TUB-2 protein; contains similarity to Pfam domains PF01167 (Tub family) , PF07361 (Cytochrome b562) , PF00400 (WD domain, G-beta repeat) contains similarity to Interpro domains IPR009155 (Cytochrome b562), IPR001680 (WD40 repeat), IPR000007 (Tubby, C-terminal)" /note="Predicted" /db_xref="InterPro:IPR000007" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR025659" /db_xref="UniProtKB/TrEMBL:A8Y1T6" /protein_id="CAP38856.2" /translation="MKILWESDWQGSRIEQAITHLSWLEQPDKPDHGMLGVGTETGSV GVTFTDFRPTPDDLTRYNFNLRGHHNTIRIVTWNKAHSKLASCDASGIIYVWVRNDDR WSVELVNDRGVKVVDLAWSPCGGSALICYEDNFVLIGSANGQRVWSNSFPGSSNVTCG VWAPDSKQLVLGFTSGTIQVLSNQGANITERSFTEDKLMQMAFSTLRNAGTKEEEWTL AMLTASNKIIMINAFDQINSDVYRSPFYIYKMQWNPDGTILAVINSNDELVFLDIHCR VIHKDRLTIEQWHNKTLVTPPMCNPKLSAFTWAHQGNVVILAAGGTMFCGRILFGVPS LFELVTYGMWKMMGSSAKDVDKLPIPLKEMNAVRELDHHVVRCRIPRPEEICDYVCSV VDARCYCTIRPMARGSHTYVLCFEHMGGLVPLLVGRQVNRFLPQFQITMHHWDPYPTL KFHIGPGGSAQVEDVNGTIIPSTNRNSLWRRSKRQIRALMTRVVYTGRTRPIQWTTLP GRPRKPDTRLIQVNSNVWCTRFNISSLSPNLLPNFLGQVIYKTSVLHLQPRQMTIDLA VLKKDKTGATRKLPEMTESTTTHMTSSGGEGLTSEERQFFEKILLECLSLRAAINSSN FGKSEEPLPLPSTSSSTRAVRESTSSTQTTPISTRTLESSSKHDVTSMTSSASTWHEE IETLAFIDGDQTDDRTLLVERPALKSGFAAMEMQASKKDAEVIRANVDKLASIAEQLS KRHGDFDVKRDKRDVKEMRAQMKNLLKRVNDIEQKVTAGDVKTEVRQLLATLKEMKKA LGEGVPKSGKHPNSNCKIETMTNKTPFWNEQNQVYQLDFGGRVTQESAKNFQIELDTK QVLQFGRIEGGAYTLDFRYPFSAAQAFAVALASITQRLK" CDS join(1153140..1153172,1153402..1153536,1154473..1154608, 1155443..1155889,1156656..1156903) /gene="Cbr-scm-1" /locus_tag="CBG_22219" /standard_name="CBG22219" /product="Protein CBR-SCM-1" /note="C. briggsae CBR-SCM-1 protein; contains similarity to Pfam domain PF04144 SCAMP family contains similarity to Interpro domains IPR018170 (Aldo/keto reductase, conserved site), IPR007273 (SCAMP)" /note="Predicted" /db_xref="GOA:A8Y1T7" /db_xref="InterPro:IPR007273" /db_xref="UniProtKB/TrEMBL:A8Y1T7" /protein_id="CAP38857.1" /translation="MSDNPFADPFAAPPPKATPAAPVAASSSGGTEDFNPFANRAGRS SSSNIAQPSTHQSTTSGKSGMDDELFRKQQDLERRAQELRMREEELDRRQRSNAANNL NTGAANNAPRPHNWPPLPTIIPIEPCFYQDIEVEIPVQFQKTVTLAYYVFLTYVLALV VNVVASLFYMIWGGGSIGQLFLACIQLALFSPCSFLFWFRPVYKAFRNDSSFNFMVFF FVLFFHCIFTFVQTLGLSNYACGWINALDTFKVSVPIALLMLISAITFTVALTGMVTA LVKVHRLYRGAGFSIDKARQEFTNGVMSDAGVQRATAAATQAAAGAAFNQATQGRF" CDS join(1160571..1160619,1160670..1160741,1160790..1160899, 1162811..1163026,1163875..1164045,1164097..1164180, 1164351..1165061,1165279..1165363,1165412..1165515, 1165570..1165668) /gene="CBG22220" /locus_tag="CBG_22220" /standard_name="CBG22220" /product="Protein CBG22220" /note="contains similarity to Pfam domain PF00782 Dual specificity phosphatase, catalytic domain contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000340 (Dual specificity phosphatase, catalytic domain), IPR004182 (GRAM)" /note="Predicted" /db_xref="GOA:A8Y1T8" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="InterPro:IPR004182" /db_xref="InterPro:IPR010569" /db_xref="InterPro:IPR011993" /db_xref="InterPro:IPR016130" /db_xref="InterPro:IPR029021" /db_xref="InterPro:IPR030564" /db_xref="UniProtKB/TrEMBL:A8Y1T8" /protein_id="CAP38858.2" /translation="MSTNFDNSRNSSDIGGPSNSTVLQEPIDIQLLAAESVIWTEKNV AYIGPFGKFPGKVVITRYRMVFLVGDHGGKHYKRWKLDVPLGQVSKVEKIGGQSRSAA MRRDDNYGFIVLCKDYRNYKFACLPTSNRKSICDALNRYAFPISHNFPLFAFVHAAES PRSISDGWKIYSAEGEYERLGISSSRLWEKVDINKDYKFSETYPRVFVIPKATVEKGK VFLKKVGEYRSKERIPIIKSCYLSHLANIMSANANCRELLILDARPAVNAKLMKAKGG GYEDNYTTASLTFLNIHNIHVVRDSLKRMVSTLLPRVDEKNFYKVLDGTKWLHHVQSI LEGALKAVFNVDTEKQSILVHCSDGWDRTAQLTSLTMIQLDPYYRTIEGFIVLIEKEW CSFGHKFGQRIGHGEDSHGDGERSPIFVQFFDCVWQIMRQFPWAFEFTQDLLIYILDE LYSCRYGTFLFNSEKIRLLDNKCAETTISLWSYVLENKEKFTNPIFRVRQTKKVLYVN PSFCVLQVWVDYYARFNPHLKTPQHEDIQHSGTPFVNAKKHLMGEIMALEESINNADE " CDS 1167852..1168304 /gene="CBG25188" /locus_tag="CBG_25188" /standard_name="CBG25188" /product="Protein CBG25188" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IM13" /protein_id="CAS00943.1" /translation="MVQLQNLSLSCNLTLGRNFADMENFDIFLSSSPVLKRVNMSVGT TTEPFRPDSKLYEAESIKVTQHSPTVPDIFSRFQGRQVFLRWTSGGDLELELWRFVNE WITGETFQNLEYLKVEISKTIGPQFLNLISARRIDEEDKPPTHTLPKV" CDS join(1169454..1169494,1169545..1169620,1170277..1170565, 1170612..1171033,1171639..1171749,1171812..1172108, 1172412..1172603) /gene="CBG22222" /locus_tag="CBG_22222" /standard_name="CBG22222" /product="Protein CBG22222" /note="contains similarity to Pfam domains PF12695 (Alpha/beta hydrolase family) , PF02230 (Phospholipase/Carboxylesterase) , PF05677 (Chlamydia CHLPS protein (DUF818)) , PF12697 (Alpha/beta hydrolase family) , PF00561 (alpha/beta hydrolase fold) contains similarity to Interpro domains IPR008536 (Protein of unknown function DUF818), IPR003140 (Phospholipase/carboxylesterase/thioesterase), IPR000073 (Alpha/beta hydrolase fold-1)" /note="Predicted" /db_xref="GOA:A8Y1T9" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR029058" /db_xref="UniProtKB/TrEMBL:A8Y1T9" /protein_id="CAP38859.2" /translation="MIYPKIANFKHESRHERKTAGLCSELHLSASTVPMGENSLSATM APEDYATIVSNLQSAVCLNVARRVACPAHDSKLWSDVASRNYSIWRILWKILIVIVSI FYVLLPPYPPKLFRKLVFCCPQKGRYYYLIAVKGTTRRACFKASEADGHDHLSICLPQ MIRPKIRAVDVFYHLLRCKVFTLPYDEKHKICAMELYCEQSIRWLHRDKNRKRLRSPN LIIFSQPNSSDLGCCLMMDPNFADIADFLQCDLLIFDYPGYGVSEGTTNEKNVYAAIE AVVKYAMEQLGYPQEKIILIGFSLGTAAMVHVAEIYKVAALVLIAPFTSFFRIACRRP SVVRPWFDMFPSLEKSKKIVSPTLICHGEKDYIVGHEHGVQLKDTIPDCELHLLKHAS HQVKILCNRILEKYRSPVSFGIFCEREMWDRVEQFLGSRVGITRAWIEHLQSESEILD NPVSASEVRMSRERSAVIKMEQGSN" CDS join(1173708..1173771,1173945..1174141,1175009..1175200) /gene="CBG22223" /locus_tag="CBG_22223" /standard_name="CBG22223" /product="Protein CBG22223" /note="Predicted" /db_xref="GOA:A8Y1U0" /db_xref="UniProtKB/TrEMBL:A8Y1U0" /protein_id="CAP38860.1" /translation="MTDITNVSTSMSYDDRPFASGVITTQTSGSLCLEMEGPPSKEST ESEIISNGLDPPMDTTQSTENSLESEIKTRTAIKISPLKIAYEMLTTGSLTVSGFLLW TARPHYLPRQQLIVPFQYISFFGSIIAWSIAGVAVFYEWQASKYAVVY" CDS complement(join(1176541..1176706,1177496..1178008, 1179016..1179270,1180024..1180106)) /gene="CBG22224" /locus_tag="CBG_22224" /standard_name="CBG22224" /product="Protein CBG22224" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1U1" /protein_id="CAP38861.1" /translation="MSQRMFPSLDLPLNQLKAEVRKMNVSELLIFSCQSHEHAVAVST IPGVAIENPLFDLDFVPKRAVLTCIPDEGSSWDRWEIQFGHLKPESKVKARNMNGIEI VIIKRPRRIVKVLTRELTSEALAMFIRHMKNTFGGVRFRKLVFELNTSEFKCLEPVLP TIKECRDYFVSFQRKRLSEIEIDWVTRSIHATHKFEVCRNGKGSTYTKCCFQHVLKRR NCEVIILIDSLATLSDLETCVRQWYYSDARDLRMVKVLASNTTEEMNLEGLKPRKWQR FERSQHFLCPKDSVTERVVDCQHGTDIERPDGLLATVAIIGSAYFFVVWHERFHTISV RDRQ" CDS join(1184950..1185013,1185598..1185617,1185696..1186115) /gene="CBG25189" /locus_tag="CBG_25189" /standard_name="CBG25189" /product="Protein CBG25189" /note="Predicted" /db_xref="GOA:B6IM14" /db_xref="UniProtKB/TrEMBL:B6IM14" /protein_id="CAS00944.1" /translation="MLIPCFLLIFTYFIVWNYSRRLFYENHFVFLPICYIITFLIIPC LIIFFQGLSHQSSRYCIQPEPDRLINKILPLAIVLYATLDFFPTHEANCEIGEYSDNC KLFFKHIPLILFGVKSLGLWVAAGFIDYWMAKKLDIMSNGKLIGRLINNGRGEWEQQI PVWEDDD" CDS join(1188948..1189211,1189843..1190289) /gene="CBG25190" /locus_tag="CBG_25190" /standard_name="CBG25190" /product="Protein CBG25190" /note="Predicted" /db_xref="GOA:B6IM15" /db_xref="UniProtKB/TrEMBL:B6IM15" /protein_id="CAS00945.1" /translation="MSIARRVFTYIFPNDPNLDKDQIFLHNVLWDGFCSFAYYLLIFM LLKTYHVAVRQSLAEIQRLRMYFLMSLILSVRFLFSHNFDFEILRKICPMTTSLNSLA SIHLVAWPHSLLLLYHLSQQCYLYEIYPSNYFTGIPQKLIYTCFFTWAAYSAWHAPQG SCPNELVSLEMCKSVYDVVFLLRIVVIGVFLSYSEYMMIIACADSFDIYSFGEYVGKR EWKDNRWVETRTDQDRRR" CDS join(1191364..1191474,1192417..1192593,1192777..1193370, 1193420..1193522,1194050..1194330) /gene="CBG22228" /locus_tag="CBG_22228" /standard_name="CBG22228" /product="Protein CBG22228" /note="contains similarity to Pfam domain PF01370 NAD dependent epimerase/dehydratase family contains similarity to Interpro domain IPR001509 (NAD-dependent epimerase/dehydratase)" /note="Predicted" /db_xref="InterPro:IPR016040" /db_xref="InterPro:IPR036291" /db_xref="UniProtKB/TrEMBL:A8Y1U2" /protein_id="CAP38862.2" /translation="MSVLITGGVSKVSVKLAEELMKNGRNVVFLHNGTNDSISESVLK NEKFSLVNLSSVNEDAIKELIETKNIQTVFDGSLTTSDVLLAPLPGAKTLILGITSIL DAMRKSTSPPSLVLISGEEIYGTNNRVETQPLEPTCFVGAAQMSVEAMVHSYAVSYRI PIVIGRLPRVLVDSQGELEMYRKNSKDFQNILSLSDAVQGLLSIEKLAHSQKPAEVFN ISNSVELNASESRKSTMENSKILFSTSWKPSGLSTLSSESSEKNLEIPPVFLVFGANS ELKKEFFVLVKSAKFVAKDSNIIYLREASDKIVIEEINTVKPSHLVYFGEETESFEGD CFTLHTNMVTNLYFPWLLASLSEKNGLHFTHFGNTEISQETSAMAVKGYTGKMLEYFQ NTLRLGTKIDESTLELMKAKKTGGLNNNF" CDS complement(join(1194432..1194794,1195282..1195503, 1195942..1196022,1196068..1196310,1197037..1197120)) /gene="CBG22229" /locus_tag="CBG_22229" /standard_name="CBG22229" /product="Protein CBG22229" /note="contains similarity to Pfam domain PF01482 contains similarity to Interpro domain IPR002485 (Domain of unknown function DUF13)" /note="Predicted" /db_xref="GOA:A8Y1U3" /db_xref="InterPro:IPR006342" /db_xref="UniProtKB/TrEMBL:A8Y1U3" /protein_id="CAP38863.1" /translation="MSFRAGRPINLIFIILLIFLGIVLLYGQQTSTKHTSEDGILGLR PNVPLFNRWSSCMAERVFNETDHKIFWAKFQIWTDECDGKAEIDQLNLVPLQNSDETK YGLLPVESDPLGSASNLVTLGIGKDIDAELLYKQKMNEIGRNISFYGADPITEINADL YAKIGKYFPFAVGSDAGYSTASVYVNGTYLNRDVVHVDLIYFFDRILKIKTFDNIWLD AEGAEYPLFDIFHKTGRLERKGIRFCQMSLEVHSPSEPQQIQFMELIKTIIKEFRFGI HKNRLVGHMRMYLFNFGDSYCVRKFLKRNLYELISKEDREEMEEEFEENLISKN" assembly_gap 1194894..1194903 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(1197988..1198062,1198103..1198237,1198287..1198487, 1198541..1198850,1199501..1199779,1200075..1200465, 1200510..1200825,1200980..1201104,1201543..1201708) /gene="CBG22230" /locus_tag="CBG_22230" /standard_name="CBG22230" /product="Protein CBG22230" /note="contains similarity to Pfam domain PF01482 contains similarity to Interpro domain IPR002485 (Domain of unknown function DUF13)" /note="Predicted" /db_xref="InterPro:IPR006342" /db_xref="UniProtKB/TrEMBL:A8Y1U4" /protein_id="CAP38864.2" /translation="MARFSILSLLFVVFSLVLAVYFLIQISPDPQISSNLKRKILENW SICARKQLDKTHTADEVRKHRILRRIFWHQFSSLTTYCDVAENIDLLGLISLKNSDEV KYALMPKNLPTKNSTFNFVTLGIGKDITAEKSFKEEAEFLGYQGKFYGADPIIEDNSQ LFSQIGEYFPFAIGGKTEISNASVLKNGTYREETISHVELLKFLKDDLKIAEIDHLWL DAEGAEFGLFDYFYNDGPLERNVFQNFSNFRLANLSILLVLIFQKTFNFQIFEKWPIS EFPKYFSFSAFKFPETIFQNFLISKNKKFPFSESQKFSLQSRFNLFQKRQKSSSSGLY VPFFLCNFSHSSINTVLYNLFIFSELQKECAYPNIHMWFRKRYLTTWNIPIYFCFPLS PKNMIKLIKLSQIKRFKSINYIRYYCCLNNQLIVDISSKHYGHENLVKIVEREEINND YFPLNVSGKMIDFQLSEKFEFPVAAYHLYEKESVIQSMHNYFVHLFGDAMEYCWKTDD RKTPIPKLQNLSACIRVYISPNYGDMKTIENFLSSIPVLKSVDIFAQLTTESFSSESA IYQKLEYLEIELYLVDFPKNQILNGIEAEYIAPTMKPPTHTLPKLYIGNDNKTNTDPI ISHTYVVRESVSHVASVLIREKKLFFGVWNMTEKEFLNMVE" CDS complement(join(1203335..1203604,1205082..1205186, 1205314..1205633,1206222..1207493,1207666..1207813, 1209834..1209991,1210037..1210052)) /gene="Cbr-ain-2" /locus_tag="CBG_22231" /standard_name="CBG22231" /product="Protein CBR-AIN-2" /note="C. briggsae CBR-AIN-2 protein; contains similarity to Pfam domain PF12938 M domain of GW182" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1U5" /db_xref="UniProtKB/TrEMBL:A8Y1U5" /protein_id="CAP38865.2" /translation="MHHRRGNRGGYRGNHHHHHHQHNATPPKQLYVDTGPDGSGLVPI GYAPQAIMVYQEFIPNEAAEQSGMNGDGWQGPPGGRGGSHHMNGGGGNRRGGYNNQRM PQQHHGNMNRMMPPAFRPQQQPQYMPPYGPPMGGIPGDVLDLSMRMDGMSMASTPTMA PYGDMGPPPPGVQQWNQPTPFAGPPPPQQDDLYGDPMGGGGGYQPPQHQMQQQPPYGQ HRSGGGGNNYGNNRMNQNNRGYQPRNQGYIPPMMVQQQNQSFYGNQQGAHFNPSPFSM ASGGGGSQTPHEHHMGGGGGHNGSYGGSQAGGQMDDYSMWTDENDEEAKRKKLLRDKG LLAWGDADVSNSKPIRRWIVPEGHEEDFETAMERCPNHLKKKALNEESIRRRMTSDNP AVVAQAQLQAEEEANATMKIGKRPIIPTGWGDLPSDIPAGPEKSVDYDQGSSKGGWDD GGFRHPAPVQQQQQYQQQQDDSSLWSNPLSGVFGGPSSSETRNPFFAHHMQQSAQQQQ QQHQYGDNGVLLDTGSVWSPVMDGSTMGPPSMIGGNGGNSGGGVGGGGPSAASSSLPM GMLSMMMMGGGGNGDIDQLKLAEKLKLAVDKGHLDTSLLSVPHIPPNVLDLLTEILEV IPRLDALEEELDKVGRNRPTNSDGEGTSSGGGAPPPSDQATSWMTKDQKTEHDKRVIS VVTTKIEVTQLSRKINEKLVECGMLPPSILQQHQPNNNSGNGGPSGPSDGPSGSGGGG GGEFNGNGTAPPDHYYDYSFLG" assembly_gap 1203752..1204302 /estimated_length=551 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(1210768..1210896,1210961..1211092,1211198..1211335) /gene="Cbr-ptps-1" /locus_tag="CBG_22232" /standard_name="CBG22232" /product="Protein CBR-PTPS-1" /note="C. briggsae CBR-PTPS-1 protein; contains similarity to Interpro domains IPR007115 (6-pyruvoyl tetrahydropterin synthase-related), IPR022470 (6-pyruvoyl tetrahydropterin synthase, cysteine active site)" /note="Predicted" /db_xref="GOA:A8Y1U6" /db_xref="InterPro:IPR007115" /db_xref="InterPro:IPR022470" /db_xref="InterPro:IPR038418" /db_xref="UniProtKB/TrEMBL:A8Y1U6" /protein_id="CAP38866.2" /translation="MERVEMFSAAHRLNSENLSVAENKETFGKCNNDNGHGHNYVWKV KLRGEVDPVSGMVYDLAKLKKEMNLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMYQ KLKSVMSNPSVLYKCTIEETPKNVFTYKGN" CDS join(1213337..1213453,1213507..1213794,1214011..1214142, 1214306..1214452,1214787..1215090,1215147..1215361) /gene="CBG22233" /locus_tag="CBG_22233" /standard_name="CBG22233" /product="Protein CBG22233" /note="contains similarity to Interpro domain IPR010916 (TonB box, conserved site)" /note="Predicted" /db_xref="GOA:A8Y1U7" /db_xref="UniProtKB/TrEMBL:A8Y1U7" /protein_id="CAP38867.2" /translation="MSAAPIHREPVGCLDSKTVGICLLLIVNVLWVLSSELTRFIFVD EEFRRPFFTVYVKSCTLIVYMIRYLLFEAKNDNSYKILISENSVETDYELTCESLAME GYESVTDVDSDVESIIVDGEKRQRKIRFAGRREIRRMPASNAEDQRRARLPYSQPSID CQLYLSRHVKYTLFFFAPLWLVCSFTYQAALAFTSVSSLNLISSSSSVFVLAFAICFP SANNKFSAYKALLVLINVAGVLVVSHYIPSLSGAFFALVSALSYAVYLFTYGHFEEKY GRVDINLMFGTIGVIALVVGTPALNLLDTFGVEELHPLPNMTQFSSILFSALIGTIVA DYLWLLAVGLCDSLTASLSMTISIPLSFFADTVIRSRAPTLAQLLASIPILLAFVGAA YANEDLPL" CDS complement(join(1215650..1215796,1215851..1216134, 1216181..1216328)) /gene="CBG22234" /locus_tag="CBG_22234" /standard_name="CBG22234" /product="Protein CBG22234" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1U8" /protein_id="CAP38868.1" /translation="MSEERKFKEVPADFKVNTSRMPLVLKAYRMKNFKVDPQLLKKLD DGESIDDVTNPPSTSATATAEIITDPPLKRKALEGGFSRKSKPRLPDEKCTQCGCRML RSVDPGRPDGELLLECMRANCLASVDFTSLPAGTVIGNERDAKLPLYYNLDLYYQTAP DPTPPTRKPMSLTSRGLFVEVPGQETMARFLN" CDS join(1216874..1217045,1217129..1217391,1217447..1217554, 1217603..1218097) /gene="Cbr-rpl-4" /locus_tag="CBG_22235" /standard_name="CBG22235" /product="Protein CBR-RPL-4" /note="C. briggsae CBR-RPL-4 protein; contains similarity to Pfam domain PF00573 Ribosomal protein L4/L1 family contains similarity to Interpro domains IPR002136 (Ribosomal protein L4/L1e), IPR013000 (Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1U9" /db_xref="InterPro:IPR002136" /db_xref="InterPro:IPR013000" /db_xref="InterPro:IPR023574" /db_xref="InterPro:IPR025755" /db_xref="UniProtKB/TrEMBL:A8Y1U9" /protein_id="CAP38869.1" /translation="MAARPLVTVYDEKYEATQSQIRLPAVFRTPIRPDLVSFIADQVR RNKRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFA PLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKIESF RKTKEAVTFLRRSHLWADIEKVYHSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECAR AFRNIPGVDVLNVERLNLLKLAPGGHLGRLVIWTESAFKKLDAIYGTTVANSSQLKKG WSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKIHRNPLKKRTLLYKLNPYASI LRKASKASAKK" CDS complement(join(1218211..1218483,1218531..1218650, 1218826..1218915)) /gene="CBG22236" /locus_tag="CBG_22236" /standard_name="CBG22236" /product="Protein CBG22236" /note="contains similarity to Pfam domain PF01476 LysM domain contains similarity to Interpro domains IPR018392 (Peptidoglycan-binding lysin domain), IPR002482 (Peptidoglycan-binding Lysin subgroup)" /note="Predicted" /db_xref="InterPro:IPR018392" /db_xref="InterPro:IPR036779" /db_xref="UniProtKB/TrEMBL:A8Y1V0" /protein_id="CAP38870.1" /translation="MTIQSTSSAATATPDYCQPDESTFLVGFNRVRRYGTTQSQSSPA TPCTYTIYHVQPDDTLERIALKHNCSVSSLVRANKLWSPSALFMKQFIRIPIFNTQHA PTPPPSLRSQEKPCNQMPASTERVEEEKSMKDILQRIDRNIKTFRKCDNSSSSAYDHI " CDS join(1219374..1219484,1219713..1219802,1220157..1220403, 1220936..1221184,1221680..1221910,1222439..1222632) /gene="CBG22237" /locus_tag="CBG_22237" /standard_name="CBG22237" /product="Protein CBG22237" /note="contains similarity to Interpro domains IPR002052 (DNA methylase, N-6 adenine-specific, conserved site), IPR001876 (Zinc finger, RanBP2-type)" /note="Predicted" /db_xref="InterPro:IPR001876" /db_xref="UniProtKB/TrEMBL:A8Y1V1" /protein_id="CAP38871.2" /translation="MTTPKKSSNCGKRDLSKMTDLGKWYKKVRGVLKTGKIKIMIIHY SLLSVIFRRTLSLETLYALPFLPVERIKNRLFHGERVQSTFVPSAQQQQQLQNSATQS TSSAGSTTDPQMPHQPVLINPPYPVHPGFGTGFPQYQYPQQQHHQPVYPPSYGWALNS AAAAAAAAPPPPPPPPQHTDSSSSFSLLSLDVGVGNETAGSGYDHLIDHHHDDGQEPS YLRPDAHEISELRKAQSAKLEKVKQRMVDEVTSLNFVINDVKELEKWYDDNYPYTLVK DDAITTEELEERVRKMEEKLRKLRAKSPGGRPIRPPKPRSYSQENSTSPWTCDRCHVE NQPFSYRCKKCHLPSRRFDPSEIEFCGCEHCSTAATNST" CDS join(1222861..1223043,1224039..1224331,1225142..1225298, 1225937..1226289,1226567..1226840) /gene="Cbr-got-2.1" /locus_tag="CBG_22238" /standard_name="CBG22238" /product="Protein CBR-GOT-2.1" /note="C. briggsae CBR-GOT-2.1 protein; contains similarity to Pfam domain PF00155 Aminotransferase class I and II contains similarity to Interpro domains IPR004838 (Aminotransferases, class-I, pyridoxal-phosphate-binding site), IPR004839 (Aminotransferase, class I/classII), IPR000796 (Aspartate/other aminotransferase)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1V2" /db_xref="InterPro:IPR000796" /db_xref="InterPro:IPR004838" /db_xref="InterPro:IPR004839" /db_xref="InterPro:IPR015421" /db_xref="InterPro:IPR015422" /db_xref="InterPro:IPR015424" /db_xref="UniProtKB/TrEMBL:A8Y1V2" /protein_id="CAP38872.2" /translation="MLSFFRRFMSSSQTACASPLKWFKNVPAAPADPILGVTEAFKKD ANPNKINLGVGAYRDDQGKPFVLRAVAEAERQIVDAKMDKEYSTITGVPEFSPLAAKL AFGESSEVIKEGRVFTTQSISGTGALRIGGQFVEKFIPSKTLYYPTPTWANHLPVFRN SGLTIHPYRYYDQSTLGFDVKGALEDIANMPEGSVILLHACAHNPTGVDPTKDQWKEM SRIIKDRKLLPFFDMAYQGFASGDVDNDAFALRYFVEQGHNVLVAQSFAKNMGLYGER VGAFSIVCDSTEEVSRVGSQMKIIIRPMISMPPLHGARIASRILSDPVLKQSWLEDVK MMADRIITMRQALKENLQREGSTRNWEHITNQIGMFCFTGITQQQVQKLINDHSVYLT NDGRISISGINTGNVAYLAKALHDVTK" CDS join(1228105..1228116,1228375..1228623) /gene="Cbr-acbp-1" /locus_tag="CBG_22239" /standard_name="CBG22239" /product="Protein CBR-ACBP-1" /note="C. briggsae CBR-ACBP-1 protein; contains similarity to Interpro domains IPR022408 (Acyl-CoA-binding protein, ACBP, conserved site), IPR000582 (Acyl-CoA-binding protein, ACBP)" /note="Predicted" /db_xref="GOA:A8Y1V3" /db_xref="InterPro:IPR000582" /db_xref="InterPro:IPR014352" /db_xref="InterPro:IPR022408" /db_xref="InterPro:IPR035984" /db_xref="UniProtKB/TrEMBL:A8Y1V3" /protein_id="CAP38873.1" /translation="MTLTFDAAAAQVKTLKTSPSNDELLKLYALFKQGTVGDNTTDKP GMFDLKGKAKWSAWDEQKGTSKEAAQAAYIKLVEELTGKYGV" CDS complement(join(1228923..1229759,1229808..1230016, 1230073..1230211)) /gene="CBG22240" /locus_tag="CBG_22240" /standard_name="CBG22240" /product="Protein CBG22240" /note="contains similarity to Pfam domains PF05383 (La domain) , PF08777 (RNA binding motif) , PF00076 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)) contains similarity to Interpro domains IPR002344 (Lupus La protein), IPR014886 (RNA-binding motif), IPR006630 (RNA-binding protein Lupus La), IPR000504 (RNA recognition motif domain)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1V4" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR002344" /db_xref="InterPro:IPR006630" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR014886" /db_xref="InterPro:IPR035979" /db_xref="InterPro:IPR036388" /db_xref="InterPro:IPR036390" /db_xref="UniProtKB/TrEMBL:A8Y1V4" /protein_id="CAP38874.1" /translation="MGDTAAAAVALDETDQKIMKQLEYYFGNINLPRDKFLQEKIKED DGWVPITTMLNFNRLAAISKDTDKIAAAVKASGSDVVVISEDNTKIRRNTENPTPENS LEYWQKIKHRTVYMKGFNTDTQLDDIIKWANQFGETENILMRRTKPGDRTFKGSVFAT YKTREEAEVAQKSDVKFGDIQLTKMMQDEYWTMKNKETKEARAANKAAKSAKNTAEAA ESEKAQNAVHYEKGLILAVDGIKGESSVDSIKTFFKQYGSVGYVAHEVGNATAEVRFN NDSEGGAQKAWEKAVEAGTDGKVMMNDAEITARVLEGEEEEKYWTEFNNRKSQKQNFR GGRGGRGGRGGRGRGGRGGRGGRDDRRGNKRGADGEDAGPQGKRTVFGDADGAPAGTD AE" CDS join(1231073..1231190,1231358..1231889,1232059..>1232413) /gene="CBG22241" /locus_tag="CBG_22241" /standard_name="CBG22241" /product="Protein CBG22241" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1V5" /protein_id="CAP38875.1" /translation="MGARDLALGLARWVIKNGENEISGDLTAAIVYRLRVVENYHHTD VDVICEAMRLLIKQLVKLPPVTFAPEVWIPILTAIIEGGIEPLWSDMMITIDLSHIAT SSAPDENLDDVDSELPPNSGLKTCEQITTISREAVLEIGLPRRVFSAIWGCDFGELME KMMGGSWEDIKISTTNESAKQASWLLERNIFDTFSEMSNYEQFAKEIYYAALARLLKR LQEDQKPSKDAEDASHYDMSFQIYEEVIKKLWPYLTKKDLDATKKSTLTIFEKLLSTA PNDNLVQKIAEKFIDTCGWLKISAEQICAEMEPRLWRTVKSLVARLLDLKKTIPYEIG M" CDS 1235890..1236555 /gene="CBG22242" /locus_tag="CBG_22242" /standard_name="CBG22242" /product="Protein CBG22242" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1V6" /protein_id="CAP38876.1" /translation="METDRFQQIGNKLVECNMAKRDASKRCPLFTLKQLKDVDGLTPR ELIYVATQMKTLKTPEGLGRHQKFYEGYEGIAGILEKFQSREHQIRICQKLLENFCTT IMENEKSSLFFLMDSENILTWLEEIGVLDALTENLVELCFTIEAWDMMTLLQLDPNEV HFEELQIFGKIWNSKVWKTLDEERQKEMEEQTRLLLRKQYEVQNHKMKVRDFKGFLKF ESN" assembly_gap 1237343..1237427 /estimated_length=85 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(<1237977..1238312,1238835..1239242,1239301..1239556, 1241445..1241975,1242438..>1242910) /codon_start=1 /gene="CBG22243" /locus_tag="CBG_22243" /standard_name="CBG22243" /product="Protein CBG22243" /note="contains similarity to Pfam domain PF02207 Putative zinc finger in N-recognin (UBR box) contains similarity to Interpro domains IPR013993 (Zinc finger, N-recognin, metazoa), IPR003126 (Zinc finger, N-recognin)" /note="Predicted" /db_xref="GOA:A8Y1V7" /db_xref="InterPro:IPR003126" /db_xref="UniProtKB/TrEMBL:A8Y1V7" /protein_id="CAP38877.1" /translation="SFRRFFLRIFNEIVATDMKQWTNDLPIEKVNHRLGGFLEWLDDF SDDVRATDFGTHIQSILHLAHHCWFRLRTIEVAELDGTTPEAISVASKKFVEFIAGHM DKIVRWMEPNPFNYSSRFEQFLEVIFTFPDLAKEHRQTIELFLEQIFDLFLREDCIQG LINHPDYKVQTTEKYGNSSLNTLNEYYLKDPVHGKLFRIQTILELICSYGTENVHLYC LARIQEAVRTIPAKILENSGILSGDTIIVENSQKRIIPDVTILTEFIGFFNCLYQQLC IEPPVEPTEDTVIRAFLLQDSDIRARNDSVKKNGHAEKGHHKNELDFNFCTFKSTGNK FVTQHWYNCYTCKMIESTGVCSTCAINCHRGHELAYSKKGAFFCDCGSNGCESMIIQV EHVPHPINALRGQIPDGMVQKASPKNPNIFPYKFGFFKPEFSKFSNSGFETVKNAVRL VQEEFEKAHESIEKILEAIDKGNQKALRVTEKREKIVKSMRNMERVELEENEEFMEAL DSAGHFLPIRRSDIRIHDTHNSSALPRQRELADVIKLDNGTELLVMIPDSIQTSLHLH YMDTRTHLLQGMHFLRTETEQIPFNAVSLHVSGNRVVVCGVYEIYALRFSPQGTVIDR AHIKLLENGNSSSMQNNPVRKAMFCEETRGDKKKRQLIAGNFFR" CDS join(<1243392..1244311,1244955..1245416,1246510..1247154, 1247597..1248081,1253551..1253966,1259947..1260600, 1261437..1261979,1262475..1263255,1263886..1264565, 1265516..1265650,1265719..1266113,1266810..1267497, 1268135..1268428,1269240..1269685,1270410..1270719, 1270807..1270992) /codon_start=1 /gene="CBG22244" /locus_tag="CBG_22244" /standard_name="CBG22244" /product="Protein CBG22244" /note="Predicted" /db_xref="GOA:A8Y1V8" /db_xref="InterPro:IPR004190" /db_xref="InterPro:IPR025704" /db_xref="UniProtKB/TrEMBL:A8Y1V8" /protein_id="CAP38878.1" /translation="SKFPVATMQYIRVYDLTLHDSDFVEEMVLTTGNVEDVVILNQDN GNIRILVLASSGYLYEHNITDCSADNNSIFLTNVVNTPGMDMNGDGVSLHYSSTFDLL FVSLDTALYVARLPDAGSPPIYDWKLLNIKWPVEVWRESAGLISCLSKEISDQVIYFL PQEDKILIQKTHVKRPISTYFLLISSKKQAIYSCLLFADLPTCEIWETTWQLTHDLWI EDVPSERFAVEIVDTQGATPRPLDKRDAVLMAEQIEPIGSVDWSCREIEAFYTHDELN HRMAAVQENCMPITVVQQTHFTLLARITNSRIVRMIRVEVEGPTGPDFLKIGGTRYSI NSREHKAFDLRLSREESLNMDHREISIEVIPKSTQNTIKIRSLKLYGCDRDQMDEVQP RFERQPVLSTSNRLVFAVLGFPGLEKKWAERQAKKHLSRKLNHPMVYGAALRAIIRAN SPGNLDENLFRIIDSAYLQEWKALPEWTDAVGFHEMRTNYIEQLLIRLQAVRTRWAFF YKTLKHEFNGSVTKFVEIMIEEMKRMPLHRCSMIAQAIVKVVFGLLSHTTSDDSEHLI QIFLDIFTDQPTYHLANDMRSAVQETITRYENSMKKQAKTLEIFHHRIGYRVTRVAES GIGQFYGCPKIVEESSDSVLISQINGIKQSHEADDTQWLQLLINMVLNKLTRSKSTTT WQNISDSPSYNLSRVLASCVAILDSKVVANHFTHLVSLIKYDADQIYPFTEESYANYS LLRSVELLLFVCLEKRCEAGCECSEAITERLLKELQSVGIRDLCFKVLEKLIPEWKGR GPATITRGSTVEGGHQRKVWLPHLPLVSSSANPPNAAVLKSSDWPSNSNDAYIISCTD LVLLIPQHLHELDRKKSIPRDDRWFQKLCQLMTYSIGCSAYRQSKKLLMAMCNGDETK YKIMRDKYKMQDLLQQLVRKYVDVSKEIGGHQQLTEIVDILAAITKLALARPDMWSDV ASTYTTWLLRLACYTADVVASQVVELLIVAVRDSSVGGQLSIQLADSIIEAENGEFIE KIIKRFLIGKDEQLRWTLHGMLRSVIQLASRQNQCSIVKKLYNMMYPLVANLGVQGAQ LVDLIATYAPRVFSSSELVSMTQSEISTIQKLSNLLNEEGYRGNYRLMSELGLGWKAI QFDRNPCLVCFQTKGSHDVVKMTSMRQDARYSPNTMIYKLISNYEISKVTIKLSDVKR TKTIKKVSLYYSAKSVESVELKLHPDLWRKCAMVTVPDNEICINLALAVPVVTSSLVI EFEEVADQRGISQLHCPRCSGPVRSQSGVCDGCGENAFQCVKCRAINYVEREPFLCQS CGYCKYARIDVLATCRALPGAQHITCDAERGQCIQEITQLLVKMDTTRTKLTGYRAVC ESLYLKPRPLPAYRLHVENTHIAEFFEANGSVNTEQQPFQSVTQPMANLSNSIKNLHG ELCQQTQQLMYLHEELNRYDHSNEISVVCYKPQNSSYYSTSESCFGCLCNQLLHSIAL LHSSCDDENALNLLLSSDSVIEKLGCLGQTYEPLREEIEELLVRLMFNRSDMTTKIQK LIESGDVNLSVMVKSLMYAADPTWQQKLKLLIRFAIEKRDENSCLQALMVLNKYLEAT KSVTVEERRRSRMSGKESVVRWLTSDDDWKDCCSIASTSHTKAPPTPSNPYQWISECL FSQWMSVRSAANQLLVSLSRQSFHEPISLLILCENIPKLGEMPSRSCDQFMASCHTII DSSANTKTRLFIQQFHVYLIRRIHEECANLHEQSISLLTDNSFGERLRCFVELLSLLL SGSNVENVLLKAGADDLLIFLLHSTIFLKRMMTRRTRAIDSSRIALEKLLKRVSSRDG TKLMSVCVESLKLVKDTSTLGIIVGVMMEIMNPQQQQEESFYIQIEKDVAQEDFLQGR MANNPYSSSDPGMGPLMRDIKNKICRDTEMIALMEDDNGMELLVGGNIISLSLSVRDV YDRLWKRNNIGAPMLIVYRMRGLMGDAVETFIENFGVAEDSDEDAEEDEQLAKMTSCL TKCGGIDKLMDLLATSVDSSSGRFLLGHLRKIFERIVKIPSGRRALIERQMPERMFSV VRTCCADPTNESKVQIGLELYKVVEFVVSDKQVQDILGGIQKEDATWWFDLFEKRGNE EGSVTEMHRKTAQLLDQMTASIGNVVLGSHDSEDVLVEMYKRILKWEVIDAGVTAAEQ RARVTISRRDQTIMMTEQLATITSNLLQSTYGIRLKQKILDSGVIDSTCQYLLKDLPN LYQPTESPEWKVFLSKPSLKLILTLLAGLARGHQASQKEIAKTTLKLMHRLEQVASDN SIGTLAENVIEALNEDEEVKNQIKMVRDETEKKKKQLAMANREKQLQKMRMKVGSGGQ ITVSSRTIHNEPSIDDTDSLTCCICRESVIRGTQAAGVYAFAAVDPETARTSTVSMMV MVHLECHKNAIRGGGGGRAVDEWTRSKLHNAGAKCNVITPIAMGNCSNENWMEALQRF ATDIGRISGLAHGVINRNFVFVDICKLIDRFIYKRSFSNQSDGGGRESNMQYLSILHL LGVSLGTGDVEFEISNPMQRLVAFLFTELTAESWNEQKNDVLRATLNDAQTNGVEATW QGFKPTLMTWALVDAYFNKIIKITGEDRIEWLREHLVENINKTRGFVEDFDSNVLPCD DINEFCDVTGAPLEELNMFLAGNQP" assembly_gap 1248412..1249389 /estimated_length=978 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1251254..1251376 /estimated_length=123 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1254063..1259374 /estimated_length=5312 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1271338..1271613,1272218..1272806, 1273329..1273600)) /gene="CBG22245" /locus_tag="CBG_22245" /standard_name="CBG22245" /product="Protein CBG22245" /note="contains similarity to Pfam domain PF04435 Domain of unknown function (DUF545) contains similarity to Interpro domain IPR006570 (SPK)" /note="Predicted" /db_xref="InterPro:IPR006570" /db_xref="UniProtKB/TrEMBL:A8Y1V9" /protein_id="CAP38879.1" /translation="MAPYSGLKQLDVKLLIFLAEQTENTTAPLVLKRLCELFAESQTP QKPAAMYAIRIIRFRHKIHLIDELDMDTRVKILFAIGAPVDSDFVKKLQKRASVKVDE EARIIEYVANDGSLTLRGKHKTSKRRSSLAVNSARSGQNPRDDEAIADDESLMNRRSA MDSRRSELNKRAHDDSDEDYTSSPKVPRDDETMADDHGPGPSHRIQLPFKAEPEEKHD EDLIQREIKAEHMEQHPRVVPNDMPAGDVSSKKVLEFLQNLVSTLDCHTLKELERKIE EALGDPEIQNQSIPAEMLVAGLESNLYTVRRRATVAGTADSTSLEKFLLILSSTLLYL GSPSLASLYQTLKETIRNLKGQEKQISEDVICRAIENLFMLVHD" CDS complement(1274286..>1274522) /codon_start=1 /gene="CBG22246" /locus_tag="CBG_22246" /standard_name="CBG22246" /product="Protein CBG22246" /note="Predicted" /db_xref="UniProtKB/TrEMBL:G2J724" /protein_id="CAP38880.1" /translation="XXXXVRRRATVAGTADSTSLEKFLLILSSTLLYLGSPSLASLYQ TLKETIRNLKGQEKQISEDVICRAIENLFMLVHD" assembly_gap 1274513..1275173 /estimated_length=661 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS <1275164..1275400 /codon_start=1 /gene="CBG22247" /locus_tag="CBG_22247" /standard_name="CBG22247" /product="Protein CBG22247" /note="Predicted" /db_xref="UniProtKB/TrEMBL:G2J724" /protein_id="CAP38881.1" /translation="XXXXVRRRATVAGTADSTSLEKFLLILSSTLLYLGSPSLASLYQ TLKETIRNLKGQEKQISEDVICRAIENLFMLVHD" CDS join(1276072..1276250,1276303..1276809,1277316..1277447, 1277601..1277921,1278737..1278958,1279018..1279098, 1279149..1279322,1279376..1279634) /gene="CBG22248" /locus_tag="CBG_22248" /standard_name="CBG22248" /product="Protein CBG22248" /note="contains similarity to Pfam domains PF12706 (Beta-lactamase superfamily domain) , PF07522 (DNA repair metallo-beta-lactamase) contains similarity to Interpro domain IPR011084 (DNA repair metallo-beta-lactamase)" /note="Predicted" /db_xref="GOA:A8Y1W2" /db_xref="InterPro:IPR011084" /db_xref="InterPro:IPR012340" /db_xref="InterPro:IPR032042" /db_xref="InterPro:IPR036866" /db_xref="UniProtKB/TrEMBL:A8Y1W2" /protein_id="CAP38882.2" /translation="MSKLSEDRLNLCAKFDDDTYYTNFQSYYNIVAQVHSVVLTARNI YVLRVWRGSSFGPEHLKEKREAGMFHINEEMFGSYIVPPDNQILKVIERFGKSYLIEI VVYDNHIETVKTLKSLDFVAIKNVHAFTRGDYLTMTLHGGNGSFDRGIWVVPETSENS NFQKMREACNVLLMSVQNDTDDVQEFGTLGSDETGCDVPVISRNPEERQIAKACNKIV IGDQISVDYFVKSSKCNYHFLTHAHADHCRGISAKFPNKVYCSKETAKILHLVVGEPL PEDLIHPLELNIPYKFEHLQVTAIDANHCPGAVMFVFQGPLIDEIAGGPVLCTGDFRA EASYMRQFENEKLSWVKDIDYSRIYLDNTYFSVDVAFTSREISEQLLQNEIMDHPDTD IVLPLHRLGRERIIENLSSKIFEPVFVYPEKLAIGKALGFFYEYGIPNQKRKIQVVKR NGWKMPDATEKPIIVVEVTQVEHLYGATSESNSNIKIPYSDHSSREEILKFLKYFKFK EIYPTSKSYSKAEFKTMMQAGKTFTEENLEKQLELHTFLEKCPEKSPIAEPRIPGRVY RSDFAESQCPFPRGVVWQDEHEECMTGDLDEWEEGPPQTIHEAIARSRKLIRPRTTTT " assembly_gap 1278253..1278567 /estimated_length=315 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1279755..1279957,1280341..1280691, 1280745..1280841)) /gene="Cbr-syp-3" /locus_tag="CBG_22249" /standard_name="CBG22249" /product="Protein CBR-SYP-3" /note="C. briggsae CBR-SYP-3 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1W3" /protein_id="CAP38883.1" /translation="MEKFVNNPKDAERFETFCRQLAEFTQDLAKDRVAQEKAMKQMAA QQLKAEKAFKERVAKDRAKFAAQRAELEQELRELTEINEKLIAQRKELEKEQDAAHEE LMNELDRNEADLADKECGDNFESLIDAFNKLSYESVLTNNVDELKIEKKQLQVAIAEQ KAKIAEMIPALEPTHGVTYKERNVLRVSLLHQVNKVRREYQTSRLQEEALKAKLSN" CDS complement(join(1281742..1281829,1281876..1282199, 1282315..1282481,1282529..1282648,1282699..1282797, 1282843..1282979,1283030..1283163,1283208..1283300, 1284773..1284948)) /gene="CBG22250" /locus_tag="CBG_22250" /standard_name="CBG22250" /product="Protein CBG22250" /note="contains similarity to Pfam domain PF09772 Transmembrane protein 26 contains similarity to Interpro domain IPR019169 (Transmembrane protein 26)" /note="Predicted" /db_xref="GOA:A8Y1W4" /db_xref="InterPro:IPR019169" /db_xref="UniProtKB/TrEMBL:A8Y1W4" /protein_id="CAP38884.2" /translation="MDSIVSITKNNRHQAKVKRPNSVDASHVLISCLRAILARGIFIV HSIVTIRQTVLISERESVWGFALLSLLIVFEGGYAIIMRAGDERKWFCTSVLLYIVAT APPIWILETRICNWRAGLEKSVQGFETIQHPVALKDNSELRLQLLEQLLLVNLIVGRW LLPKGDISREQLSQILLAYLAISSDIVEFFDVFKEKVVYSNSKVQTIVLSAWTLSLLQ FPFVLTVSRARKMRVAITNDYEQLFARQRPRSCFKAFYDVDIWAIFLANALQDVPFLL TRLYLMTVHNLVTYTMIFFFFKNMLIILLQTYRSIIIINDRYINPKPPDMDIIEHNMD LMKSRNQDIDDDFPSSPYHKSHHHKGHEKQSKKEKKREKKRDKKSGGHKNGNRHNNGN ETPKKTRRSSSTTPTRTPKQRRTSSRSISEEREQLFPRHHGRRMDRLDTLEET" CDS complement(join(1286571..1286771,1286890..1287330, 1288156..1288870,1288926..1289286,1289334..1289565, 1290025..1290288,1290711..1290949,1290996..1291252, 1291294..1291499,1291545..1291664,1291991..1292297, 1292350..1292472,1292573..1292685)) /gene="CBG22251" /locus_tag="CBG_22251" /standard_name="CBG22251" /product="Protein CBG22251" /note="Predicted" /db_xref="GOA:A8Y1W5" /db_xref="InterPro:IPR008250" /db_xref="InterPro:IPR023298" /db_xref="InterPro:IPR039720" /db_xref="UniProtKB/TrEMBL:A8Y1W5" /protein_id="CAP38885.2" /translation="MKKEVDPDLGLSSDVAFDRLIHEAKSSIAEWYSVHVVNKLKPDA HLPNKVSTFSHYFCSRTFLFIRISLIFLIIGSVDIENRITFSSAAVYALLLLYTILLE VWQNRIRSTAFQQKYRKAFEAILELEKSKPKDFRYPQKSLEAVTEDISVCQACFRDGF IVEVPRILLVIGDVIVLRPGQVAPCNCETFDGRVLAEGDRIKWDIKTDKRSGFIHPLE PVYARVTCYPIKNHLESALSAEDTPLQFDYQLQFMIHKVFEHYVIPIALVLSILGTIV RFCYSDDETLFGTRFVFAVPSLTVLPLLILQLPLLLHFVKFMNNREVARYLGLSKDFE SCKDLISIFSSITGTSFIDKKGILSCVHPSMEKVVFATNQADESGCLGIHLEVMNLSS DQEPVISPKGFAINRWNLSMDDPNWQRYLPNLLPLAYNLLLNSCQQSDPFRRFLDHLA VVATKVPRTIATANRRCMCQLPYLLGFTPKSLEKFQGPPKILGFYKKQPGEAPLPGLT KHRTPIEMAFCTIHDDAKTLHSHLACQGTANIVVDACTHIWNGCDVIPMSKRLKSSVK DFYLRHSMTGHCLAVSYRPCFPKLASSLDGKFVEVPLNHEPPKIETTLPRSQSNESLD EADYTKTIRTAEMAIDQYFTGQILCGLVVLHYEPLPDAVTVIEKLDQICVRPVYFSKE NELRSRVFAEKLGIEAGWNCHISLAEDDTVVPAKKTDVAHEQFVKQKPAKPKFWKRVA LSESNLDALDCESLVRGSPSLRKMSMLSAKMAPIPNIARLPTGIQNVRPHLEEVDNVP LLVGLFTDSRTPAVEEMVQIMQENGEVVMVVGSCRNPSNTMLYSKANISVCVDDVEEA ACRLLEKDGDVVDERSNVMHFSSELIALATDFRMDHSKLLKLSSLIVCARHRMSSFRH SLLFILYGSLLYSITLLMSTFFFLPIIFTHSQTILTSFIHIPILFLGSLFTNFEPKSK IIRIAPKNSSEIPRAEKRKAVTQFICQFIPSAIYINLLFLFLLMTNSNLMCSFSDISC IFNTDGSAGSQPISMDFNETSIMRQDSLSTETIRHIMGLQVGEKASALYRNGLFQLTV IYCFLSSSFVFGLSSLWYEFPIKCLLWDGAVVICMVTQIGYSLLRGIQLSNLFSLLPL SILAIWICIVSIINELIKIRRIGQFTREQRRTKFEFDTKLGMNSPY" CDS join(1294599..1294651,1294705..1294835,1294883..1294992, 1295040..1295142,1295188..1295294,1295338..1295485, 1296898..1297124) /gene="CBG22252" /locus_tag="CBG_22252" /standard_name="CBG22252" /product="Protein CBG22252" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1W6" /protein_id="CAP38886.1" /translation="MSYFLHQSEWNDLIERHVFEPVNDVTPEMLSELNEKRHFFVQTD RKYVGLPFDKHQWSRADRPPLPRHRPHYKKVVIQGCPTHAIRCTSIHNKEFKKEVLHL EHASYFHYFLTGAGVYSEPDENEVKKPRISEIKSSRVREIIKETNGSSAQVFQIAQDE GMEVSRKQCQNQVRTVREHSGEASIRDKIVRKRKREVTVEQLNLLKRIFPDDVTVYTD DQNITHYQVKLFTTGKIDNNAQTLQDTAQPDSDTDHFDLVEEEFTYDEPDREIKQEVS DPDDQLLLYPKYEYSL" CDS complement(join(1297307..1297619,1298186..1298242, 1298289..1298423,1298470..1298579,1299587..1299727, 1299771..1299839)) /gene="Cbr-pqn-24" /locus_tag="CBG_22253" /standard_name="CBG22253" /product="Protein CBR-PQN-24" /note="C. briggsae CBR-PQN-24 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1W7" /protein_id="CAP38887.1" /translation="MIIKLLILACLALGTVYTLTCYNGSKMLAMQSVGETTEECPDSS YCYNMSTTAYVMLNMVKAGCSRWRCMLAKDTCIFTTFQMVPVSLCCCSYDRCNVGGNP VYSDNPKQIQGGGGSNWNNNNGASGGSWGNGNSNNNNNGGQNNNGWGNNNDWSSNYNY GGQNSAKEETMIKKTAEDSQSKKKWTNKEVEDMWKKSIDDRGDEIQLEDDFKKIDKNY KTQSVPQQAPRTLSARKEVEHIPLGAGKAGSAGSAKSTTSSSSSSGKAGNAGEINI" assembly_gap 1301125..1308833 /estimated_length=7709 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(1309520..1309683,1310879..1311080,1311685..1312116) /gene="CBG22254" /locus_tag="CBG_22254" /standard_name="CBG22254" /product="Protein CBG22254" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1W8" /protein_id="CAP38888.2" /translation="MSFRAPQKSAPSTFSSAPSAFNSNSRTFNVYGQDAEAFGSAIGQ SIGQRIQQVCLMLILKVESRISQSISLLPWAALLFSPTLSKLNWMLLSNWDVRFMPSL VWSRKAALPFAGTSTIQWNTVLGNKQDTSPTYDVQFTPPSSPSSSPDATSYTSMTPST SSYGSSSTYQSTYPTSSATWPSTHPPEDLPTVQQAYQAQQASYGSTPSIPQIPQSLTG NSNGFGGLPGLLPPPQNSDCPWCSQNGGYRGKRIPSEEKEQKKEEKI" CDS join(1318862..1318909,1318960..1319109,1319436..1319644, 1319693..1319905,1320638..1320797,1325336..1325710, 1325754..1325867,1326340..1326485,1326836..1327597, 1327662..1327764) /gene="CBG22256" /locus_tag="CBG_22256" /standard_name="CBG22256" /product="Protein CBG22256" /note="contains similarity to Pfam domains PF00168 (C2 domain) , PF00397 (WW domain) (3), PF00632 (HECT-domain (ubiquitin-transferase)) contains similarity to Interpro domains IPR000569 (HECT), IPR001202 (WW/Rsp5/WWP), IPR000008 (C2 calcium-dependent membrane targeting)" /note="Predicted" /db_xref="GOA:A8Y1X0" /db_xref="InterPro:IPR000008" /db_xref="InterPro:IPR000569" /db_xref="InterPro:IPR001202" /db_xref="InterPro:IPR024928" /db_xref="InterPro:IPR035892" /db_xref="InterPro:IPR035983" /db_xref="InterPro:IPR036020" /db_xref="UniProtKB/TrEMBL:A8Y1X0" /protein_id="CAP38890.2" /translation="MVVQTVIHGYPPNTDNDTQLIRVRLLRGQKIGRRDLFGVCSPYC LVRLENSNGDVVDEVQVETKRKTRHPVWNSVFTFRVTRSCQLKLLVYDENRLRKDSLI GFVSRSMDDNRISTQAPNPEEYPLATSSTSSKGKSIGSLLLTFHFVPSSSDNSPADST SDLQQQQTTSHGIPQGWEEREDGNGRTVYINHALRTTQFTPPESIPDGNTDAITEQSV IEETRRRRDNYEHRSQVTDEPSDTAVVSNELTAVSLGYFARQIDDAMRANFERGGGHD EEEEDDLRLPDGWDMQVAPNGRTFFIDHRTKTTTWTDPRTGIAARLPVRGKTDDEIGA LPPGWEQRVHVDGRVFFIDHNRRRTQWEDPRFENENIAGPAVPYSRDYKRKVEYLRSR LPKPNSNSGKCDMVVHRDTLFEDSYRHIMDKKDYDLRNKLWIEFFGETGLDYGGVTRE WFFLLSHQIFNPYYGLFEYSATDNYTLQINPHSEACNPEHLSYFHFIGRIIGMAIYHG KLLDAFFIRPFYKMMLGKKITLFDMESVDNAYYNSLIYVKDNDPADLELTFSLDDSIF GETQNVELIPGGANVAVTEENKEEYIEAVISWRFVNRIEKQMNQILKGVQEVVPSNLL RLFDANELELLMCGLQKIDVKDWKANTIYKGGYGPSSQVVHNFWKCILSFDNEMRARV LQFVSGTSRVPMNGFRELYGSNGLQKFTIERWGSADMLPRAHTCFNRLDLPPYTTFKE LKSKLLTAIENSEIFSGVD" CDS join(1328226..1328253,1328313..1328911,1328958..1329443) /gene="CBG22257" /locus_tag="CBG_22257" /standard_name="CBG22257" /product="Protein CBG22257" /note="contains similarity to Pfam domain PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) contains similarity to Interpro domains IPR000504 (RNA recognition motif domain), IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:A8Y1X1" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR034819" /db_xref="InterPro:IPR035979" /db_xref="InterPro:IPR038446" /db_xref="UniProtKB/TrEMBL:A8Y1X1" /protein_id="CAP38891.2" /translation="MYANGYYKKDGYERGPKNILVCGKPIPVTSYTYLFLVYSEETSV IKLLHECHQEGNDLFVLVPGCREFARLQIRPWFIHNAFYISNKALNNRCIDIHRTVFV GGLPRFVTAEKIAQVFSGFGKVLLVNIDMDENYGYPKGAARVAFERDSSFNRALEKKN IKLASIDSSKTNIEIKPYVLEDVGCDQCGGLWFNPFLDIYKQLKNSDNSSLNTWASIR QFLNPEDSSELDSAGSEARKFLSMTKSFGLDQEKTVNVLGNEYTLGPSLWYRFLPLPS FEGAFHSVDLISLKENAEKSILQNQKIESFLPMKRTNVFSNKSSYCKERQCRQYYCPS CSNKHHSGPGLHSHLTAGKQHPPRTDKNMYRVSLGI" assembly_gap 1329601..1330146 /estimated_length=546 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(1335040..1335113,1335213..1335685,1336154..1337032, 1337601..1337809) /gene="Cbr-src-1" /locus_tag="CBG_22259" /standard_name="CBG22259" /product="Protein CBR-SRC-1" /note="C. briggsae CBR-SRC-1 protein; contains similarity to Pfam domains PF07653 (Variant SH3 domain) , PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00018 (SH3 domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR001452 (Src homology-3 domain), IPR000719 (Protein kinase, catalytic domain), IPR011511 (Variant SH3), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR000980 (SH2 motif), IPR008266 (Tyrosine-protein kinase, active site), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8Y1X2" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR000980" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR001452" /db_xref="InterPro:IPR008266" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR020635" /db_xref="InterPro:IPR036028" /db_xref="InterPro:IPR036860" /db_xref="UniProtKB/TrEMBL:A8Y1X2" /protein_id="CAP38892.2" /translation="MGCLFSKERRSGGNDGQQERIDVARFTTPSQQQTVFHVNNGGND MGGGTVSLNGTSDAGLGGGRQQEREVLVALYPYDSRADGDLSFQKGDAMYLLDYSNCD WWYVKHQRTGITGYVPRNFVARQQTIESEEWYAGKIPRNRAERLVLSSNLPKGTYLIR EREADTREFALTIRDTDDQRNGACHFDSNFALSRIDFTGTVKHYKIKRLDHDQGYFIT TRRTFRTLPDLVRYYSEMPDGLCCQLTFPAPRLAPTRPDLSHDTQQNWEIPRNQLHLK RKLGDGNFGEVWYGKWRGIVEVAIKTMKPGTMSPEAFLQEASIMKQCDHPNLVKLYAV CTREEPFYIITEYMINGSLLHYLRNDGSTLGIQALVDMAAQIANGMMYLEERKLVHRD LAARNVLVGDKISGVPVVKVADFGLARKLMEEDIYEARTGAKFPIKWTAPEAATCGNF TVKSDVWSYGILLYEIMTKGQVPYPGMHNREVVEQVELGYRMPMPRGCPEQIYEEVML KCWDKTPERRPTFDTLYHFFDDYFVSTQPNYAPPSA" CDS complement(1338746..1339150) /gene="CBG22260" /locus_tag="CBG_22260" /standard_name="CBG22260" /product="Protein CBG22260" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1X3" /protein_id="CAP38893.1" /translation="MVPGHPDQGYQDSGHLDLGHLVPGHPDPGHQDPGHPDSGHLDLG HPDPGHPDPCHLVPGHPDPGHPNPGHPDPGHPDLGHMVPGHPDLGHPDSGHPDLGHPD LGHPDPGHPDPGHPDPGHPDPGDPDPGHPGTQ" CDS join(1341292..1341340,1341383..1342317) /gene="CBG22262" /locus_tag="CBG_22262" /standard_name="CBG22262" /product="Protein CBG22262" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1X4" /protein_id="CAP38894.2" /translation="MDSGSDVEPPPKVSKTEILTPSRAQKLKELHLSILAQYGINSEF EVSRPMDVVNNEVVCSLMALNVSKMDVFRITKSLLGLDGNEQCDLSKFRRRLTWIENQ HKINQRRDKDKSFEFLKKSAFDVNFFVFQDAENCSESFSPKINPAEPDVIENVCGSSD LTVFREKETQTNSFTSVDLSWPANIPPFEKKIHDSCISQYVELRKKYKKLQKTLDTLK HWKVYNKSLISSSRLSKRSLKKAVDELVKKLEGLIGSHQYARQLLLNDDDRIGKKFFN ASSGKHAFVIDFRISKGKTTAAVQYEGERKPIHIDFDHFQKSIDNGTFQFS" CDS 1343987..1344103 /gene="CBG22263" /locus_tag="CBG_22263" /standard_name="CBG22263" /product="Protein CBG22263" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1X5" /protein_id="CAP38895.2" /translation="MNHGYGNNSERIVKIAKHKEDKYYYFQLKVSAKLIDFR" CDS join(1348770..1348796,1349013..1349188,1349546..1349652, 1349694..1349887,1349966..1350050,1350112..1350343, 1350541..1350748,1350796..1351020,1351062..1351160) /gene="CBG22265" /locus_tag="CBG_22265" /standard_name="CBG22265" /product="Protein CBG22265" /note="contains similarity to Pfam domains PF03151 (Triose-phosphate Transporter family) , PF08449 (UAA transporter family) , PF06027 (Eukaryotic protein of unknown function (DUF914)) contains similarity to Interpro domains IPR004853 (Domain of unknown function DUF250), IPR013657 (UAA transporter), IPR009262 (Protein of unknown function DUF914, eukaryotic)" /note="Predicted" /db_xref="GOA:A8Y1X6" /db_xref="InterPro:IPR009262" /db_xref="UniProtKB/TrEMBL:A8Y1X6" /protein_id="CAP38896.2" /translation="MTNCIIFKTMTNCGAASTSSAPPQQNGLRPPSVQPHRNPFAPPP PLPSPDDYDDAINCSPCCDDPNVSRTFKALILGQILSLCLCGTGVSSQLLVNENVNAP AAQAFSNYFLLCFVYCISLACKTDDNSLVVVLRKRGWRYLILAIIDVEANYMIVKAYQ YTNLTSVQLLDCATIPTVLFLSWLFLSVRYLASHILGVTICLVGIACVIWADALGDKG AEGGSNKVLGDVLCLAAAVMYAICNVAEEFLVKQHSRTEYLGMLGLFGCIVSGVQTAV FEQEALSKIVWDGTTVSYFALFAFSMFIFYSLVTVVLQKTSALMFNLSTLTADFYSLL FGIFMFKDTFHYLYFVSFIICIIGSVIYSMRETQVSDIMQTRSNRNLQMRDADEPRRV CPCLFVCCCCCGCCFEEGDSTEGSIDVSPSPNERMQMGLNPRSSISPCPVHGNQLSHL " CDS complement(join(1351358..1351518,1351568..1352040, 1352090..1352300,1352346..1352424,1353271..1353827, 1353872..1353983)) /gene="CBG22267" /locus_tag="CBG_22267" /standard_name="CBG22267" /product="Protein CBG22267" /note="contains similarity to Pfam domain PF04969 CS domain contains similarity to Interpro domain IPR017447 (CS domain)" /note="Predicted" /db_xref="InterPro:IPR007052" /db_xref="InterPro:IPR008978" /db_xref="InterPro:IPR037895" /db_xref="UniProtKB/TrEMBL:A8Y1X8" /protein_id="CAP38898.1" /translation="MQHIRLAVDHSKLDSKFDGYKVSMDNIHFESKQLPQRSCLRSPT NIMVSLQHMKVFSNDNQLFCNVEKCTESHEYLYRILDTGHIQELAYDKRSRQWKDMII GNIDIGTDSSPAFPTGLIFTDFEFYVASNGISDISVHLGTEVMLKRTFEGAKGICLIE AKVIENKLNILAYSVENSEENDRKTTKTRSRIYWIVVNLLDFDCTSNLTIEKETQFIQ NGHFETCTFSSDGNLIFLASEKPRVDGEQVTVLNHTWSQTGATIEVKFTLTGGSLSQE DVDLNVSKSSVKLAIQDVVVLNGTLGGEIDENDVEIAMGQTEKSLTLKLKSTSDKKWE KLIGLETSRMEKVENEEMGKMGASEEPMEECDEADKALLFYWVNRQSGKTIAQCDVSG SQSLFVRRNRDQPADFCLRHDVDGLLWSFAGPAPCHVATLQAFGYVQASKTTRLWSGC SPNNTMACIIEGNNRVLLYSQKVEVFGSLSNRKTSQTVNHVAKQHLLRLECPDPIRGV HMTNTHLFVATKEHIHVAELPV" CDS complement(join(1354515..1354961,1355278..1355412, 1355463..1355690)) /gene="CBG22268" /locus_tag="CBG_22268" /standard_name="CBG22268" /product="Protein CBG22268" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1X9" /protein_id="CAP38899.2" /translation="MTTEQHQQYTPEHTVPVLLEDIADTKTDTIQFGKVSLVRIQLRA IVESIRFNDSDAEYIVTNEARTHRMMVQKIYTPAFPRSRCEEFIVSDNVAIFGKIRVK EDGTAFINALGLNVIGWDENTAALPTNQSSVAHLKLGLHKKTGDVSRFPIDLLEPSAA LENNGGVWPSEIEDLAAGLVVKKAKVEEESSSDEEEDSDGSDEEETESEDSEEGEEEE DSFDAGPAALVQEESQVLEDSFDAGPTTTIPEAAEKPKQEEEVVFDSFENA" CDS complement(join(1356191..1356554,1356799..1357087, 1357145..1357259)) /gene="Cbr-eaf-1" /locus_tag="CBG_22269" /standard_name="CBG22269" /product="Protein CBR-EAF-1" /note="C. briggsae CBR-EAF-1 protein; contains similarity to Pfam domain PF09816 RNA polymerase II transcription elongation factor contains similarity to Interpro domain IPR019194 (Transcription elognation factor Eaf, N-terminal)" /note="Predicted" /db_xref="GOA:A8Y1Y0" /db_xref="InterPro:IPR019194" /db_xref="InterPro:IPR027093" /db_xref="UniProtKB/TrEMBL:A8Y1Y0" /protein_id="CAP38900.1" /translation="MSESSDIPTGTYSLSLGRSFDTKGRKNDPKAAQFHTLRYDFKPS SVSNNVDNTFIAFGSNSQDVHVSVPSEGGDNMTVYKGSKKDAKPKECLLFFDKKTGMV RLEKITSNINVKKTRDLDPATEQALKRGIERLRTTASSNPQHLSSSSSPEEKQRPPPP VQDTSDSESDSDSDSDDKSNVDSSDDDERALMEQMKQQQPAEQPTNSYHQESHVAPPP PSYNTSYGSSSSNRNTRINKDSEKYGLALSESSDEDD" CDS join(1357913..1358074,1358126..1358381,1358452..1360759, 1360808..1360902,1360951..1361153) /gene="Cbr-nrd-1" /locus_tag="CBG_22270" /standard_name="CBG22270" /product="Protein CBR-NRD-1" /note="C. briggsae CBR-NRD-1 protein; contains similarity to Pfam domains PF04818 (RNA polymerase II-binding domain.) , PF00076 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)) contains similarity to Interpro domains IPR006569 (RNA polymerase II, large subunit, CTD), IPR006903 (Domain of unknown function DUF618), IPR000504 (RNA recognition motif domain)" /note="Predicted" /db_xref="GOA:A8Y1Y1" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR006569" /db_xref="InterPro:IPR006903" /db_xref="InterPro:IPR008942" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR035979" /db_xref="UniProtKB/TrEMBL:A8Y1Y1" /protein_id="CAP38901.2" /translation="MDDPVLKNFNSELATLFDSRNLSKNKIQDITKAAIKAQKHYKHV VYGCEKLITKCKPDQRLNVLYVIDSIVRAANHQLKHDMFGPRFMKQFDKFFEPLMKCN SKDKMKLVRTLNLWMANKVFTEAQIQPYRDRCKFAGLKIEFEEVERIVKGANADMSIY SGTYRRKSRGNKQARTPPMPPPDDGLLGAGPSFKGPDIPTFVLSEEIVNGTISEREML EMIQKFGIDRSGVLTKDRNQLQKVLQTFIAILAPKITEAQNEKNKKDGTSIQNVLTRD FEYSDDEDDKEKEPEKEIKKLNHDEILGLANTLITQPAILSKITEVFTTTAVNPFGLP LMPQNTVPTSSAPMNLGAPPPNLMALQQSLPPGLANQHLGLQNIPGFNAAQLLNPQNA QAALMLQQRAAQLQALQGQVGTAGNQPNLMMLGNPLLPFALQAGVNPLLTELAAAQQA LLANENMESPQKNMKMAEASNNNEMDKAKKDKEKEKENKERRKMGLPAVKAGFTIGES NEKSDERGKGIDGNQANFFLFSVASRTLLLKKLPTNVVEADVKQAVESCGEAVRVKVI SKSACAFVTMETRKSANEVVQKLREVSVAKKMVRVYWARSPGQEDSFVEHWDCNRGVW ELPYDKLPSDLKTFCEGSMLDVESLPADKKTLYKDNGESLISMPPPPTMQPPVPQPPP MGFPFHPQLGQLPGQPRPPGLPPGVPPMFQLNLNAPPPPGMPQIPGFPPAPGVGPPHG VPPPGFDPNKPPPMFQQGFNAPPPPFGRGGPVGAPPPMPPPPFPPRAGPPPGMHGPPP AFRGGPPPPSHFDSSRRGPPFRPENGRGRLPDQQEMWREHQRSVRDNGRDHGRDRDYE HRDRDRSQIDRRRSEDGARRRSRWGDDDRKEDDRHDDRRDDRRDDRRDDRRDRRRTSR SPDRRIRRSPSYERDSKREPSVKKSSAEEATVSSTTLDELKDPVQEPETVPTAEKEEQ EAAPEPVKPPLQITEIASIADDHQDKTEEVPMDLE" assembly_gap 1362006..1362049 /estimated_length=44 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS 1366240..1366560 /gene="CBG22271" /locus_tag="CBG_22271" /standard_name="CBG22271" /product="Protein CBG22271" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1Y2" /protein_id="CAP38902.1" /translation="MGKFPFLGLLIIVGFHVTYSTQCDCNSSCSIYTSPVQCVRCCTH YVKRSLPLHPAHHKKRQFLLENLLETPRNRKIKKPVWREKEEQDPVQSTLPRFIRLLL KNPL" CDS complement(join(1366786..1366902,1367534..1367671, 1367916..1368005,1368065..1368386,1368516..1368800, 1368851..1369101)) /gene="CBG22272" /locus_tag="CBG_22272" /standard_name="CBG22272" /product="Protein CBG22272" /note="Predicted" /db_xref="GOA:A8Y1Y3" /db_xref="UniProtKB/TrEMBL:A8Y1Y3" /protein_id="CAP38903.2" /translation="MLDSRILHVSCITACLSVFAYRVIQDIAIDIRLLDSDSISDNIQ SDKFCNVVFDHFHLGIFLRNETFSTEILQAKLKTIFSKMFLIQFLNEQADFLHILEEG FLTMRFVAYFGFMAVCIALIEVLVVRRMGHLVRSYRALKQLESEERKEWFNCIKEFSQ EKMAVLLFCIARNQAPPINKHYIDFGEYVRDTISLRARCTDITLFACFYCMVAIGHVA TNSIFVRFMKTVPLLERNLKTRLRGESVFVVMYLTLNALVALSAILIGATIVSYAFVH SDYATIFVLESARLFIRTMYVLDRLTQCVCASRMEMIENRQNRLTDDQISAILVTGFQ SGVTRKTFRNIYIYSTLFMSLILYSFFAKNGLFVNRKLLAMRFVTEVVITIDRIMNTE RIRSTELL" CDS complement(join(1369242..1369328,1369599..1369808, 1369855..1369956,1370001..1370081)) /gene="Cbr-rpl-24.1" /locus_tag="CBG_22273" /standard_name="CBG22273" /product="Protein CBR-RPL-24.1" /note="C. briggsae CBR-RPL-24.1 protein; contains similarity to Interpro domains IPR000988 (Ribosomal protein L24e-related), IPR011017 (TRASH)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1Y4" /db_xref="InterPro:IPR000988" /db_xref="InterPro:IPR011017" /db_xref="InterPro:IPR038630" /db_xref="UniProtKB/TrEMBL:A8Y1Y4" /protein_id="CAP38904.1" /translation="MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSAKCLKGAKLRR NPRDIRWTVLYRIKNKKGTHGQEQVARKKTKKSVQVVNRAVAGLSLEALLAKRNQTED FRRQQREQASKAAKDANKAVRAAKQAANKEKKASQPKTATKAAKNVKTAAPRVGGKR" CDS join(1370902..1371045,1371090..1371276,1371328..1371446) /gene="Cbr-rps-10" /locus_tag="CBG_22274" /standard_name="CBG22274" /product="Protein CBR-RPS-10" /note="C. briggsae CBR-RPS-10 protein; contains similarity to Pfam domain PF03501 Plectin/S10 domain contains similarity to Interpro domain IPR005326 (Plectin/S10, N-terminal)" /note="Predicted" /db_xref="GOA:A8Y1Y5" /db_xref="InterPro:IPR005326" /db_xref="InterPro:IPR036388" /db_xref="InterPro:IPR037447" /db_xref="UniProtKB/TrEMBL:A8Y1Y5" /protein_id="CAP38905.1" /translation="MFIPKSHTKIIYEYLFNEGVTVAKKDFNAKTHPNIEGVTNLEVI KTLKSLASRELVKEQFAWRHYYWYLTDAGILYLREYLALPSEIVPATIKTKPREIRVP AEDRVPRAAQGEKGDREAYRTEKVTEAGPGAGPVFRAGFGRGAPPPQ" CDS join(1371593..1371844,1371892..1372160,1372499..1372805, 1372853..1373240,1374357..1374604) /gene="CBG22275" /locus_tag="CBG_22275" /standard_name="CBG22275" /product="Protein CBG22275" /note="contains similarity to Pfam domain PF10271 Putative transmembrane protein contains similarity to Interpro domain IPR019397 (Uncharacterised protein family TMEM39)" /note="Predicted" /db_xref="GOA:A8Y1Y6" /db_xref="InterPro:IPR019397" /db_xref="UniProtKB/TrEMBL:A8Y1Y6" /protein_id="CAP38906.2" /translation="MPPRRRGPAPPPSQNQSTTSVPAQRTSGVTLSVHPIWPDIQFTQ GELFFECTLFLYSVLALFLQYLNIYKTLWWLPKSYWHYSLKFHLINPYFLSCVGLLLG WRVTVCFWKTITEVIATISANRSQFIQSSLMIIEYAAIKTPVMTLIITSFLFSFNRVC HDFPNQSVLWFLFPILCYIFIFRSEIIGWFGRLRDLLGKWRRKEVDFGGLCDRLMDSP PAQIDLESVLHMCSDNPAQIREEIQVLIDDLVLRVKKSIFAGVSTAFLSIMLPCIFVP YKTSQGMPQKILINEFWECQLGIVVGLTAFSLYVAYLSPLNYLDLLHRAAIHLGSWHQ IEGPRIGHTGSMIAAPTPWNEFCLYNHGETVQMPDGRCYRAKASHLIRTVAAHPESSR HNTFFVSFLTFLNKSAPKAALPHQHNVHFRIRLIFIQFWMLVLTNDWQHIVTFVLLMF ANYLLFAKLFKDKIILGRIYEPSQEDLLLMHQLHQER" assembly_gap 1373315..1373812 /estimated_length=498 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(1375161..1375323,1375383..1375554,1376585..1376765) /gene="CBG22276" /locus_tag="CBG_22276" /standard_name="CBG22276" /product="Protein CBG22276" /note="Predicted" /db_xref="GOA:A8Y1Y7" /db_xref="InterPro:IPR009422" /db_xref="UniProtKB/TrEMBL:A8Y1Y7" /protein_id="CAP38907.2" /translation="MSKLSDHQAYDLLGHEIRVVLDTGDSRKDATTSGRLMTRDPVCQ ALVLAKIEEKNGTIETIEWIPSCSVKSVESISEPTQEINEEIDRYFAEEVGGANESDE DIQKRCELLTCLKVVNYLKSHHLDVVENPNGTWIIGQCVRFEAPYHVANLYCDQPIVL KRITKLLEGIQ" CDS complement(join(1376996..1377099,1377144..1377230, 1377285..1377333)) /gene="CBG22277" /locus_tag="CBG_22277" /standard_name="CBG22277" /product="Protein CBG22277" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y1Y8" /protein_id="CAP38908.1" /translation="MKNYRIFAFLLLVLILETAAESPAEPAATAAAESKPDVVIKLIK RGAAQRLEDSSNEEMAREKRRSSSKKNKGRKVGKK" CDS join(1381874..1381967,1382126..1382303,1383234..1383337, 1383788..1384207,1384261..1384340,1386554..1386706) /gene="Cbr-col-52" /locus_tag="CBG_22278" /standard_name="CBG22278" /product="Protein CBR-COL-52" /note="C. briggsae CBR-COL-52 protein; contains similarity to Pfam domain PF01391 Collagen triple helix repeat (20 copies) contains similarity to Interpro domain IPR008160 (Collagen triple helix repeat)" /note="Predicted" /db_xref="GOA:A8Y1Y9" /db_xref="InterPro:IPR008160" /db_xref="UniProtKB/TrEMBL:A8Y1Y9" /protein_id="CAP38909.1" /translation="MTELIRMTRIEEGLEVTPRVDTGPSTSIIYPNMSVVSQPPPLET IPEISEREIPKNRSKPKKAVFNEDGDITTRSSTSKNSHNIVVPPIFSETNFWFEKPNR AHLQYASNEAWRELSHLKRAKRYNCQEKSQNCPPGPQGPQGKAGRDGEPGEPGIDGTD GSSGISVAVAGGCIKCPAGKPGKRGKKGEMGRKGKNGKKGISMKAVIGSIGLMGSIGV PGYPGFPGPPGPIGPPGRDSNRFINPPGPLGPPGREGYQGAQGPAGFVYNTGLVGPVG LSGRDGLNGKPGDTGKIFFSKFQKNLESPRSYSILQAKAPPPFWDHEPQQKLRPFFLV HCLLKSVQ" CDS join(1386892..1387055,1387598..1387821,1388567..1388883) /gene="Cbr-ceh-17" /locus_tag="CBG_22279" /standard_name="CBG22279" /product="Protein CBR-CEH-17" /note="C. briggsae CBR-CEH-17 protein; contains similarity to Pfam domains PF12413 (Homeobox protein distal-less-like N terminal) , PF00046 (Homeobox domain) contains similarity to Interpro domains IPR022135 (Distal-less-like homeobox protein, N-terminal domain), IPR017970 (Homeobox, conserved site), IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:A8Y1Z0" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="InterPro:IPR022135" /db_xref="UniProtKB/TrEMBL:A8Y1Z0" /protein_id="CAP38910.1" /translation="MMMEYGGYFSSSTVAQQAVDVPTSAPSSVANSFFYTPQSHNIYH QYATPYLQSGRTITTGQNSSNSSTGNATSSSNSSNYRNPTHDSLQAFFNTGLQYQLYQ KSQLIGNETIQRTSSNVLNGIQRNSLVGALCSSGPPLNPAERRKQRRIRTTFTSGQLK ELERAFCETHYPDIYTREEIAMRIDLTEARVQVWFQNRRAKYRKQEKMRRVGKDDEDP SKKDHIVGLDDIIDQI" CDS complement(join(1389417..1389488,1389535..1389601, 1389705..1389818,1389861..1390045,1390102..1391001, 1391392..1392120,1392428..1393015,1393117..1393280, 1393326..1393401,1393452..1393559,1393611..1393748)) /gene="CBG22280" /locus_tag="CBG_22280" /standard_name="CBG22280" /product="Protein CBG22280" /note="contains similarity to Pfam domain PF10189 Conserved protein (DUF2356) contains similarity to Interpro domain IPR019333 (Integrator complex, subunit 3)" /note="Predicted" /db_xref="InterPro:IPR019333" /db_xref="UniProtKB/TrEMBL:A8Y1Z1" /protein_id="CAP38911.2" /translation="MNEQFARRVQKLMKINMKCEVPPEIISRLVNDSIGLDNRITGKS DKEVIDILILKDDQHDSKSIGLMYHILTSADNLELYQRIIRFINGGGVEYWHNVLCNM NMILFECWPHIHLACREQLVRLIREAIRQNVKQIENVLMNAYRVANGCFDNVSKQRIF AKLAAIIRENDAWFKSQKAAAALVGNIITCTTSVISYTPAPITASDTFRESMTDFVCW VIRNRKMDCLTLGRDFMLVLIRLGRLPQVEEIWKDILMNPSSYGVASTEDYWGKNHYL QHVRISIELERKIMFMVHNGGKNLLIYFSWFSNKYFRGNDGPALRAECVRHLLYMTMD PAKVPPAAFENRIQLLHLIVSTAPPGPEQQWLKLCLFADWFGCDDRNPTNFNYVELPL NVVRYALFLSPSTPHPNSIVQGSHCSQFANSLLEYVCKSVDVLQPSSAEYIRRNVNNA MRYCRDRLQHNLAQILENSKIDRKVSELLRVVFPDFVRNPNGSSLIRPAKKKEDQPPA PITKPRASSSDEKSSTSSATPPVTIDKPSSSNTDRLQKEKEDKEDKDLKSLVKLLRGE IGVKMEALRAQWKDLDDDADKCETIEALLQHMLNTEENFDEAQQDLAAQCLQAIMGSV VTPEQSLLPEKEKDLSEAFTHPVYSFMKILCSPPDNDDNSREMLTTMMAAMREKDSSL TYVLLYFIKGTYGTSANKVISCYRDIAKISGRGVDEMLATDLQLCAVNDNRLFGYLFI FSFVQFEKEVMESPMLMATLCANLDASQLRKFLSEIIREEIKLFRKDTFSKMLMESVE WSTAAQWIFWHLVHADGVPVEWFLSCVPRMDSKIHDEAISNMLLMLKRMDREPWPGLI RSIFQRLPQKDDKFPIDALKVLIEDSDQCGKIAEIVSSLLKTLISQNDILGVGIKSTK KGQQYKLTVQQVLEHLQHFSATCVEKKNKNTEAFLGKHVMQEAFASIRANEKSNLLVK KYSNLFGAMDIIAQEHKEQSSSRTLRGNRQGSAGDKPSSSQQSKRKGGDMDDDSNSKK RKVHSPIIELSDSDSD" CDS join(1394125..1394330,1394389..1394966,1395015..1396324, 1396381..1397283,1397318..1397815,1397866..1397978, 1398024..1398327,1398344..1398715) /gene="CBG22281" /locus_tag="CBG_22281" /standard_name="CBG22281" /product="Protein CBG22281" /note="contains similarity to Pfam domain PF10350 Putative death-receptor fusion protein (DUF2428) contains similarity to Interpro domain IPR019442 (Domain of unknown function DUF2428, death-receptor-like)" /note="Predicted" /db_xref="GOA:A8Y1Z2" /db_xref="InterPro:IPR016024" /db_xref="InterPro:IPR019442" /db_xref="UniProtKB/TrEMBL:A8Y1Z2" /protein_id="CAP38912.2" /translation="MPVRVAGKAIRDLEYLHSKVNLSELFDGEPPAMHSHIERTLEAS ETFLSDNDTVMFASATMKRILIIYQNSTAELPKQYWNPIILHIRRIWDYSADRVCHDA VDTFSTLLEIHLRQCEECLDRPAGDSHANCDWINEITQWLLEPTSLCRSRFRCISHLV GQCPTLRLNLGRDFFARTYPLISNPSFSSVIFQLIVDNIFDRDELWEMHCQELLSTTD AKLIKSRLIPLLQKYHSGNKKDQKPLESDTAVKFLNHLLIQLNSNNPPSDLQSQLEIV HALVCTTWPRKQGKDNDQPANLVDFSNWSQCITDRTMSAAIVHVETDVRLAAFRLVVE NPRKTIAFNEQDIEYIKTFLASNMPIQSPSNRQQLLAAYKFMCQRLGASAESYLKMPQ PQDRDSDSFSPDSSSLENSNTLKYKLGKDLWIHPIPESYIQLAKWMAKLAFESISSKA NYYRRIMGLGQIDVLFNRENFITDGKQLFADRLNLDSTLGSDRHKLVMDCLDDSYDLV QNTALGLLKKLDFGNIKMNEENYLNDALELMTSTRSRNSTSAVFRMQYYLARQPERYT ACLRRFLQDLNERANGAEKELMLITSLPVHPILNMIELLLKNATWQNSEEAKLAFYKE DILKELLPICNRIVAIVSPVVHNMSPEGYIPDEMLNEMYGTTTDRLAELSQHLLVCCW RAHKHVSGIFSWIIEVLAPKKIVSKEEIEAIGTFYWTQLTECKHRGAFESATEGFTQL CQFLWTTDIEDLPKPETWLDEILAATRGEQDLTNLCSTRRSAGLPHLVHSIVSTEPRS NENAALFKATSSLLSMDGKTVMYRVHSMNVMKVLIQSSQLHERIVYCYEQCLKVAIDA CRADWSERNAASQLFAALRTKIFGVMRSAQRSLQVDGKNRKSNYEFFSKFPTLYRFLY EQIENHENHSEFSLLPPLVVLTHLYTPPSSTDLYPLGPFIPPLLRIALREKHESLRAH AVAAILAISDVYAKADLSQWVQEFKFDKFQNASQNQLHSFLLIVEGLGNYGEYFNRML QVVKHVLESLVFRGWCDFTINQLLTIANSFGLNFDVDDVDLTKAVLSKRPIAVRLLRD RDAFKSEMCHHLRSYDTRRELYRTIYKQGWDACIMVSRFHSIFSSLINFFQLFRAHVI NIAIMDLASLQTVQCDAKRIMKILTCTTDEFMSQQNMQKAVETIEKHLDTPDHSWTLP STMAYATKIRYGGCLYPDNELISWIRESYELDDPETKQVGFGRGLDPTCRLNLVFQIA LDLGGMFVSRIPSKLSYTESDKEIISAVMLYLQDESDFMRQRENPSNRKFFQTAYHLG HLIHDTGYRALNPEICRVLVTKYCLNDGNEKLERFSIPENRHKTMEEVQNTVVFPIHL NSHFFQRDDLFDACAVNQYEESQLFGDIQLYETSLGFSGYNQEMYDIEY" CDS complement(join(1404160..1404287,1404342..1404522, 1404575..1404694)) /gene="CBG22282" /locus_tag="CBG_22282" /standard_name="CBG22282" /product="Protein CBG22282" /note="contains similarity to Pfam domain PF01922 SRP19 protein contains similarity to Interpro domain IPR002778 (Signal recognition particle, SRP19 subunit)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y1Z3" /db_xref="InterPro:IPR002778" /db_xref="InterPro:IPR036521" /db_xref="UniProtKB/TrEMBL:A8Y1Z3" /protein_id="CAP38913.2" /translation="MASGVASEALSNPKRWVVIYPAYIDKKKTSKQGRKISKLLAVEN PTSVEIHDVLAAVGFNPLLERTKCYPRDGERDFEVQGRVRVQLKNDDGTPKHTQKTRD EVFKMVAEMIPKLKTRQPGYTPQAAPTSSAAGGKKNKKKK" CDS join(1408393..1408674,1408732..1409026,1409077..1409174, 1409905..1410069,1410119..1410673,1410676..1411130, 1411470..1411608,1411661..1411981,1412474..1412585, 1412885..1412975,1416135..1416192,1416394..1416578, 1416853..1416966,1417073..1417270,1417319..1417407, 1417457..1417588,1417999..1418112,1418523..1418627, 1418673..1418815) /gene="Cbr-spe-15" /locus_tag="CBG_22283" /standard_name="CBG22283" /product="Protein CBR-SPE-15" /note="C. briggsae CBR-SPE-15 protein; contains similarity to Pfam domains PF00612 (IQ calmodulin-binding motif) , PF02736 (Myosin N-terminal SH3-like domain) , PF00063 (Myosin head (motor domain)) contains similarity to Interpro domains IPR004009 (Myosin, N-terminal, SH3-like), IPR000048 (IQ motif, EF-hand binding site), IPR001609 (Myosin head, motor domain)" /note="Predicted" /db_xref="GOA:A8Y1Z4" /db_xref="InterPro:IPR000048" /db_xref="InterPro:IPR001609" /db_xref="InterPro:IPR004009" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR032412" /db_xref="InterPro:IPR036114" /db_xref="InterPro:IPR036961" /db_xref="UniProtKB/TrEMBL:A8Y1Z4" /protein_id="CAP38914.1" /translation="MESSTHSTADFGRLVWISDDVDGFVAARITDITHNGFQLTTEST NQTVTRRYEETFACEEDPTKSVEDNCALVHLNEATLLNNCRLRYANGKIYTYVANILI SINPYQLIDNLYSSETIKEYRGKSLGQKEPHIFAIADKAYREMRRNKTSQSIIVSGES GAGKTESQKAVLKYLCENWGSEAGPIQQRLLETNPILEAFGNAKTLRNNNSSRFGKFV QIHFSESGSVAGGFISHYLLETSRVCRQSSGERNYHIFYQLIAGASPDLYEKLRLAPA SKFNYLKHGATMFFANSKSSPKIASDRFSETDTVSDSIISDIDDFAKLEKALGLSGLG NSEKMFIWSTIAGILHLGNIEFEENSNDSRGGCRITGDAENSLMSVSELLGLEPEELR MGLCARIMQATKGGVKGTLIRVPLKAYEAAAGRDALAKAIYSKLFDWLVAQINKSIPF EKSSAYIGVLDVAGFYFAVNSFEQFCINFCNEKLQHFFNERILKQEQEMYESEGLNIQ KIEFSDNQDCIELFEKKPCGLFDLLDEEAKLPRATFQHFTQRAHESNKGHFRLDAPRK SKVKSHREMRDDEGLLIRHYAGTVCYETRYFVEKNNDQLHNSLEMLIEQSSFPLIVAL FQNESSTGAVKTGGRLKAVSVGAKFKSQLSSLLDKLNNTGTHFVRCVKPNSQMKAWQF DGSAILGQLQCAGMASVLRLMQEGFPSRTSFSDLYSMYEKSLPPSLARLDPRMFSKCL FRALGLDSHDFQFGNTKVFFRAGKFAEFDQMMKQDPDTMMELISKVTDWLIKARWRKA QYGTWSVIKLKNKILYRADKIKKIQAWMRGYLVRKRFHKRLAVYRKACALLEHSREMT DILARMNETSQDKWRQAADSTTSELEELVKRIKNDDLEEEIDRAVKCYEECVARVDSI IADLKQQLENDELAEVERARREAEEKERRELEEKAAAEQERLLRRKMEEEREKAQKEY EMQLELEKQKEAAEAEEEQKRRDHEERDRLDAIVSARLALSDGVALVAQENGAQKQQT QSKYDLGNWKYADLRDAINTSNDMELLVACKEEFHRRLRIYNEWKSKNSANRDVPPTR APLTVYSQQKPSSSMMVSRVQAAPHLNPALTQQRYFKVSFATDNRKNGGSQSGMWYAH FNGQYIRRQLTIRPSQKPQLLVSGKDDLQMCELPLEQTGLLRKKGAEISANDFETMWY HFGGKPIVEWTP" CDS join(1420968..1421021,1422779..1423012,1423881..1423982, 1424029..1424204,1424250..1424364,1424417..1424512, 1424528..1424872,1425874..1426115,1426161..1426419, 1427842..1427955) /gene="CBG22284" /locus_tag="CBG_22284" /standard_name="CBG22284" /product="Protein CBG22284" /note="contains similarity to Pfam domain PF00501 AMP-binding enzyme contains similarity to Interpro domain IPR000873 (AMP-dependent synthetase/ligase)" /note="Predicted" /db_xref="GOA:A8Y1Z5" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR042099" /db_xref="UniProtKB/TrEMBL:A8Y1Z5" /protein_id="CAP38915.2" /translation="MADFFQQTFCIDYNGWVTGVSKAPPPKQIDFDSQTIPQLIYTKA EMDRVAAVFDAEKQSLTFSKIVSEMESLAAGFLSIGLKQGDRVLVAGSNHSQVMLCAL ACSRAGLVFSLANPNYSNSFSLKRALELGEFQCIICFRAHQYEADHLNNLLLEIAPEI MRSRKGQLKSELLPKLTHVILAEEEHKHAGTFTLSEVFLKSSKDKIAKLPDFSKWSSH KLACLQFTLGTTGAPKLISLSHYQMLNGARAVAAAFGINDKSAFKNTIFQHVLACALP IFRIAIFNLVCLSPFLTECRIVFPDATPLPKNLFSSVSKYKCTTLLSNGAALRLLLKI SQTQRVKLSALENILLIGDRVSKEVLKLIKLQAENVKIIAVGYLLTETGSIPLMGDQN SDFTRNVGKAIAGYEAHLIPLDGSENQVETGKLGKLLIRVYYGSTFMGYAPDTKGKEK WVDTGDIARMDENGAIEVVANEEDLIYDKNNCLVEHWNLERLLNQNDLIKGVQVVSRG RGQPVTAVCVARSTQFHAAKLKDELKSMCRSHHFVAPDAFAFVDDFPRVHTKIQKFRI RAMLESGQIAVF" CDS join(1429397..1429520,1430673..1430830,1430878..1431014, 1431062..1431147,1431201..1431396,1432175..1432406, 1432457..1432774,1432876..1432989,1434465..1434716, 1434770..1434980,1435590..1435630) /gene="Cbr-dyb-1" /locus_tag="CBG_22285" /standard_name="CBG22285" /product="Protein CBR-DYB-1" /note="C. briggsae CBR-DYB-1 protein; contains similarity to Pfam domains PF09069 (EF-hand) , PF00569 (Zinc finger, ZZ type) , PF09068 (EF hand) contains similarity to Interpro domains IPR015154 (EF-hand domain, type 2), IPR015153 (EF-hand domain, type 1), IPR000433 (Zinc finger, ZZ-type)" /note="Predicted" /db_xref="GOA:A8Y1Z6" /db_xref="InterPro:IPR000433" /db_xref="InterPro:IPR011992" /db_xref="InterPro:IPR015153" /db_xref="InterPro:IPR015154" /db_xref="InterPro:IPR017432" /db_xref="UniProtKB/TrEMBL:A8Y1Z6" /protein_id="CAP38916.2" /translation="MWSSNGGGGVGVVGNGPSPEHILHSVPPIVATEMQQLIDEMRLQ DFDSIRFATYRAACKLRFIQQKTKVHLVDIWNMIEAFRENGLNALPLHTVIKTSRAEL LLTTVFHNLNKRLVASQHVDTDVSISLLLAFLLGAYDKQNTGRLTVFSIKVALATLCA GKLVDKLRYIFSQIADSNGLMDHIKFTDFLQQVLSLTTAVFEAPTFGFSESAVTQCFH KDDKVSLNVFLDTFLSDPCPPCIMWLPLLHRMAAVSNVYHPVVCDACQVRSFTGFRYK CQRCANYQLCQSCFWRGRTSQNHSNEHEMKEYSSYKSPAKQLVHSIHKSLQCIPASSS GDANIDILNTTGVPIGKPTRPLNLNNIVPATPTTIRRQHAATSSADWPTSPVLLPGQA SHGGVIDDEHKLIARYAAKLSGRADSFIFVVDNFFVKFGPEEMRRVEKTRLRKVDSRD DRRQRYPLSNGRSMNSSMIEDERTLIAQLEEENSMMVREMARLESQTTSDDGLAGLRD RKMELEEKMFEMQQRRRELMMQLEHLMAQLNTGPQPTGGVSSASLSQLPFASDQQLTG VNSNVANAFRAGSLPATSLQGDLLHAADQITTNMSDLVRQLDLAQAEDNGVTINGF" assembly_gap 1433511..1433919 /estimated_length=409 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1435121..1435292 /estimated_length=172 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1436056..1436250,1436298..1436596, 1436646..1437909,1437959..1438105)) /gene="CBG22286" /locus_tag="CBG_22286" /standard_name="CBG22286" /product="Protein CBG22286" /note="Predicted" /db_xref="GOA:A8Y1Z7" /db_xref="UniProtKB/TrEMBL:A8Y1Z7" /protein_id="CAP38917.1" /translation="MKTLLPVSLALLVGLSNAADFRSLLDMCSNPPAEQKQISDKMAL PEAYKIMGSVTNWKEGKTSLLQETATKEFRVLEIQADNLSQKWIQMSSGDRRIEYIAS NGTCDDKAAPPAILKVPRFDSIIGRNTSSIASIVDGIINFIRNNNGFYVKNNIEIVGG VNAMKWVSCVNGRNASDTKVLVELRFGGDDSIRPALKQFSNPILLSIRLAELKDFNTT MPDNHFSIEFDRYAIPRGDEHKAQIAHGFFCENRNEVDLGLKPLSEYAATLSYYNYKN MTPEVVEVLYSQKKKIFVVAGASFRNFLKSFNYSAGVDYILHDYNYGYEFTMKNGSCD SFGPAPNDTSDAIVDNTTAIFMQRMEDLLVDPKLRWMPYQDTIDLAGNTYKAYRALDS AGVEQYGVEQVVEIHLTQDGYVHAINRYDHETNEIVQSMMVTRWDVATSELNLAMVQM TGCYDNGKFANNTWIVPIKDKNIRNLHSVGLSNLNKVVAETISKNVYAVIPYRVIVFY LESNGGGLSLLLRLAEKTDVVPAEVGYNHTNELATFDLFNKMKKAMFSGKMPIVVEVG GQKEEWFVDVSGIKAFPADTDRQFLGYTGGAMFVLGVFCIIFGVGLGAGGFVAYNRRE HLSQIAYRVF" CDS join(1442738..1443153,1443201..1443809,1443856..1444021) /gene="CBG22289" /locus_tag="CBG_22289" /standard_name="CBG22289" /product="Protein CBG22289" /note="Predicted" /db_xref="InterPro:IPR001810" /db_xref="UniProtKB/TrEMBL:A8Y1Z8" /protein_id="CAP38918.2" /translation="MSTYFQIVCHFYVRHSCFSIIYFNIFRTTLKMILSKYPSLVQQE ILENLNNIDLLFLSFASKKMKKLIKSTQMNRFKSINSIGYYCDSTDQIWVLMNKSSAN VCFSYRGRGRFMRIVVHSETENDYFQSNVSGKIIDFRFEYEYCLAFYRQPEKESVIKS IHNYFLDYFGSSVEYHWRAGDLTEYSRRKGHNPFIPPLRNVSFCVNTSLNWDFANMEQ VETFFSSSPIFKSIRMNAIEITEPLNPESKFYQADSIEIHQDKVTVPAVLRHFQGRQA IINCNEYKTSDLIEFLIRWKSGEAFQKLEYLKIEMGRTPRVRFLNAIRLKYIDETKQP PTHSLPKIYDWYGRIKHTESITSHKYVVRATDNRVASIKVRREILWFGVWDKTEEEFL RIMD" CDS join(1444672..1444734,1444781..1444879) /gene="CBG25191" /locus_tag="CBG_25191" /standard_name="CBG25191" /product="Protein CBG25191" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IM16" /protein_id="CAS00946.1" /translation="MKKLIVANEHIQRWCTVKFFIKKFEKKSFIEKNASKNTLKALRD EVFSRPPGE" assembly_gap 1444935..1445668 /estimated_length=734 /gap_type="within scaffold" /linkage_evidence="unspecified" tRNA 1448355..1448432 /gene="CBG28973" /locus_tag="CBG_28973" /standard_name="CBG28973" /product="RNA transcript CBG28973" /note="C. briggsae predicted tRNA" CDS join(1451179..1451213,1452176..1452305) /gene="CBG25192" /locus_tag="CBG_25192" /standard_name="CBG25192" /product="Protein CBG25192" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IM17" /protein_id="CAS00947.1" /translation="MKKNYCLFKIIALKFRNSETSSKNCTPRITNVVPLHEISCTHEF CTPESPILYP" assembly_gap 1451216..1451703 /estimated_length=488 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(1453671..1453765,1453822..1453941,1455129..1455372, 1455439..1455550,1456157..1456179,1456294..1456376, 1456591..1456711) /gene="CBG22291" /locus_tag="CBG_22291" /standard_name="CBG22291" /product="Protein CBG22291" /note="Predicted" /db_xref="GOA:A8Y1Z9" /db_xref="UniProtKB/TrEMBL:A8Y1Z9" /protein_id="CAP38919.1" /translation="MNKTPDNRFLDAIGLKHIDKTKQPPTHTLPKTYNMHFKHAKPNT DPITSHTYVVRATDNRVASIMIQRKKLCNTSVGLKAEALLTQLAVPAFHQKKRGKKLR PIFRKTRDYLQNIHKILAQNIEKHQRSIAPIYVSSVTDLKNVRWSAIRRYLKINFPRC FLNGMQATLCRAPAVEFVVFAWRPTLISPYGPTFFNSTVSRRCSIFRFPKILGILLCP IGDLNILEPSRGCPLSILQLASFEVSASISPLSLILIFFRRYKSDRQ" assembly_gap 1454285..1454294 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1457297..1457569,1457680..1457728, 1458727..1458914,1458969..1459121,1459172..1459300, 1459483..1459818)) /gene="Cbr-unc-57" /locus_tag="CBG_22292" /standard_name="CBG22292" /product="Protein CBR-UNC-57" /note="C. briggsae CBR-UNC-57 protein; contains similarity to Pfam domains PF07653 (Variant SH3 domain) , PF10455 (Bin/amphiphysin/Rvs domain for vesicular trafficking) , PF00018 (SH3 domain) , PF03114 (BAR domain) contains similarity to Interpro domains IPR001452 (Src homology-3 domain), IPR000108 (Neutrophil cytosol factor 2 p67phox), IPR011511 (Variant SH3), IPR018859 (BAR domain-containing family), IPR004148 (BAR domain)" /note="Predicted" /db_xref="GOA:A8Y200" /db_xref="InterPro:IPR001452" /db_xref="InterPro:IPR004148" /db_xref="InterPro:IPR027267" /db_xref="InterPro:IPR028501" /db_xref="InterPro:IPR035824" /db_xref="InterPro:IPR036028" /db_xref="UniProtKB/TrEMBL:A8Y200" /protein_id="CAP38920.2" /translation="MSFSGLRKQFNKANQYLSETMGAAEPTKLDDVFNDMEKNIDTTY NLITDLVAGTNEYLQPNPATRAKMATQVALSKVRGTTKTSPYPQTEGMLAEVMQKYGQ QLGDGSDLGKALNDAAEGYRQMADIKYQMEDNVKQNFLDPLMHLQNNELKDVNHHRTK LKGRRLDYDCKKRQQRRDDEMIQAEEKLEESKRLAEMSMFNVLSNDVEQISQLRALIE AQLDFHRQTAQCLENLQQQLGHRIKDAASRPREEHVPLPVLGNESRTPRSRSPAPSEM THNSVQPATNGGGMPSQAPPAYQGGPPPGGLPPPLSQQQKPQCRALFDFDAQSEGELD FKEGTIIELVSQIDENWYEGRFNGKTGLFPVTYVQVLVPLK" CDS join(<1462448..1462585,1462590..1462593,1462656..1463182, 1463276..1464575,1464630..1464805,1464868..1464962, 1465033..1465614,1465665..1465895,1465943..1466744, 1466800..>1466943) /codon_start=1 /gene="Cbr-xnp-1" /locus_tag="CBG_22293" /standard_name="CBG22293" /product="Protein CBR-XNP-1" /note="C. briggsae CBR-XNP-1 protein; contains similarity to Pfam domains PF00271 (Helicase conserved C-terminal domain) , PF00176 (SNF2 family N-terminal domain) contains similarity to Interpro domains IPR000330 (SNF2-related), IPR014001 (DEAD-like helicase), IPR001650 (Helicase, C-terminal)" /note="Predicted" /db_xref="GOA:A8Y201" /db_xref="InterPro:IPR000330" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR038718" /db_xref="UniProtKB/TrEMBL:A8Y201" /protein_id="CAP38921.1" /translation="VIDDEDLQLAAQIEKERKERRAQKLKEKRLKEGKTPKKTPAKKR PPKKEEDDSDEEEESPKKSAKKKQEKARKRRKSSSSEEVEDEEERRSSRKKKTDKKKK KAESSESEESSDEEEEVKKPKKKTPSKKNRKAESSEEEESDEAPKKQKKSMSQKKKRV AKESESDEEEEKLERKKKSQKKKHQKESSDEEEEEEKVEKKKKKAQKRRQKESSSEEE EDEEKKVQKKKQKEPSSEEEEGEESENEPVKKSDSESDEVTMPKLKKNQSAIVDESGE SDLEVMPKPRKRGAVVISESDEEKPMKKKVESEDESSDDDRKVKKNNKKKTVSDSEDG EFSDASINVTRKKRGSKKEKPEKKKKGIIMDSSDLAKETIDAENAEKERRKRLEKKQK EFNGIVLEEGEDLTEVLTGTSSQRKLKSVVLDPDAASEDPKTPVEVHQSLVSILKPHQ AHGVQFMYDCAFESIERLNTEGSGGILAHCMGLGKTLQVITFLHTVMMHPKIGEKCRR VLVVVPKNVIINWFKEFQKWLYDNDEELDTIEVNELDSYKTVEERRRVLQAWHRSTDP SVMIIGYDMFRILTVEDDPKKKKTKLSRKMSKAKEDFRKYLQDPGPDMIVCDEAHKLK NDDSALSKCMVKIRTRRRICLTGTPLQNNLMEYHCMVNFVKPGLLGTKTEFANRFVNI INRGRTKDASALEVSFMKRRCHVLYDHLKKCVDRKDYRVLTEAIPPKQEYVINVRLTE RQCELYKAFLSDVVGDTGLSKRLLPDYHMFSRIWTHPHQLIIHEQRMERERVMKEEQE EEEAFIDDDESEPEESVVSLSSESEESFLASDDDEDSGKKKKNKNKKNRKSSPPARKS RRAGGADEEEDDAAMNILQQGIRASRRLAGEDVDERECDTPPEYTGWFSKLGLCSEED KDDFSLSNKLVLLMAIIKKCEEIGDKLLVFSQSLESLALIRRMLEYMAGTGQWFSDDH EALNAEGETWSWLEGEDYMTIDGSVQSVKRDAVQTQFNDPENLRARLMLISTRAGSLG TNMVAANRVVIFDACWNPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVT KESTSMRVVDEAQIQRHYLGHDLTELYQFTPAAYDPDVEIACAPPKDRLLADVIHQNQ FAVVDYIEHDTLFANVEDEKLTEQEMKDAWTDYEKDKAGVPQRLPYDPSALRGIGLNG MIVGPHMQAMLQRQQTEIMHVENLQHDVLFKELNKMRTKDSSTALKIVLLRTLLEQIL PYIPQQMRGGMSEFNTHFIRLAHDADRRGETQADLLRKSLESFRTVIKMVRPIPQCAE PLARIQRAYPYLF" CDS complement(join(1467227..1467313,1467793..1468249, 1468294..1468415,1468459..1468575)) /gene="CBG22294" /locus_tag="CBG_22294" /standard_name="CBG22294" /product="Protein CBG22294" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y202" /protein_id="CAP38922.1" /translation="MIMLIVISMLIVMSSHSVVVFCAKPKKDKKENMLAITPQGNTPH PHGPHKSVIVEREDRDSTRTKAGNRNMKSSKEPDSTDDAFKDLAARLAKKEKPDKTND SLLGDDENPLAQLQMPERPVVEPNQDGAKLENIVEMEKKPKPLNKAPTPQVNPITAKD VSVAIPLASSAPKSKKSQKTKLKLEASPPVHTDKTQSDPRKDVDPTQIGTLEENPETV TKDKEAVKKEDSSMKNKNPSTSLKKTKKDATFFQKTTKGGDK" CDS complement(join(1470573..1470650,1470700..1470766, 1471626..1471802,1473154..1473330,1473384..1473470, 1473982..1474202)) /gene="CBG22295" /locus_tag="CBG_22295" /standard_name="CBG22295" /product="Protein CBG22295" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8Y203" /protein_id="CAP38923.1" /translation="MHGVATGNIQQTRFVALKGLAPSQAIIHSKEGLSLCVAKFLCVS SLATHRPRRAAQRAQENWRKFECMYSVAPPVPQNQILSEIGAKYIDGTKQPPTHTVPK VYDWQLQHTEPNTDPITSHTYVVRQSDNRVASILIHEDTSRFGKWQTKIYFGVWDNTE GEYDWHPQHTEPNTDPITSHTYVVRATDNHVASIVIEEKTSRLGYWYTTIYFGVWGKI EEDSKSYPGVKLFTIYPKTPKIDENGGAIIMTRCADRLLVTVVLIHLTGT" CDS complement(join(1474932..1475198,1475247..1475609, 1475656..1475916)) /gene="CBG22296" /locus_tag="CBG_22296" /standard_name="CBG22296" /product="Protein CBG22296" /note="contains similarity to Interpro domains IPR016049 (RNA polymerase Rpc34-like), IPR007832 (RNA polymerase Rpc34)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y204" /db_xref="InterPro:IPR007832" /db_xref="InterPro:IPR016049" /db_xref="InterPro:IPR036388" /db_xref="InterPro:IPR036390" /db_xref="UniProtKB/TrEMBL:A8Y204" /protein_id="CAP38924.1" /translation="MSSIKEELICEQEAESQVLQIAEAAIDGIDMDGLKSMTPGLTED ARLKAVNALLNSKKVILEQMPGGVLRVKVNSSQQIAGTEEEQAIYTLIEESKNRGIWI KELREGTGLNQLQLRKTLKSLETKKLIKTIKAVGSTKKCYILFDLEPDMALTGGTFYS DQQLDSELINTLISVSGSYAASRRKLALEEYPNNIQMQRETSYIRPQEIAQFITEKRL LNVPLTIEDLERILEVAVLDGTIERRADGKIRACAPRSSISPLVSVPCAVCPVVEDCR PGYVISPQSCDYMKNWLAEL" CDS join(1480667..1480676,1480731..1481134,1481167..1481676, 1481908..1482525,1482578..1484505,1484557..1485671, 1485719..1487655,1487710..1489683,1489734..1490021) /gene="Cbr-tag-192" /locus_tag="CBG_22297" /standard_name="CBG22297" /product="Protein CBR-TAG-192" /note="C. briggsae CBR-TAG-192 protein; contains similarity to Pfam domains PF00271 (Helicase conserved C-terminal domain) , PF07533 (BRK domain) , PF00385 (Chromo (CHRromatin Organisation MOdifier) domain) , PF00176 (SNF2 family N-terminal domain) contains similarity to Interpro domains IPR000953 (Chromo domain/shadow), IPR000330 (SNF2-related), IPR001005 (SANT domain, DNA binding), IPR023780 (Chromo domain), IPR018208 (Glycoside hydrolase, family 11, active site), IPR006576 (BRK domain), IPR014001 (DEAD-like helicase), IPR001650 (Helicase, C-terminal)" /note="Predicted" /db_xref="GOA:A8Y205" /db_xref="InterPro:IPR000330" /db_xref="InterPro:IPR000953" /db_xref="InterPro:IPR001005" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR006576" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR016197" /db_xref="InterPro:IPR023780" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR037259" /db_xref="InterPro:IPR038718" /db_xref="UniProtKB/TrEMBL:A8Y205" /protein_id="CAP38925.2" /translation="MDEGDDYVPQMSQMTDYTMMGGPPVPPPGQHQQPPPGSMPQQQR YPGQPMNPYEQHQHQMMMMQQQQHMHQMAPPVQPPVPPPAAPPPAKKPRGKSKKAQQA EAAAAAAAAQAMDPMASMAAMSNNPMMNRNPYPVSLYLQNQMGMYGGAGPPPQHYPGA NGQQGYRPGPASGGQPPNPYAQPPQQTPPTSQNYMYHQQQQQQQRGAPPTPQQAQPGY PPPYGYPPQPPPAYPPSQQSPYAPPPQAAHQMRHPQFPPHSQQQQQAPPGYWDSYPGY GGAPPQPPVTSQPMPSKMPQQELWARANQELLDIINQLEKSVHDHKARINQIYTMPRN ATAEAEAQQLHAKLTQLQADHYRYSQQLHHQQQQQQWQHQQAAHHQPPTSSQQGPVHV AQTGNQVQLNITADKSRTLISVYHEGYGGSGASSTESKESIVPPEPTPSEVPAKIEEK PAGYPGSYNGMENGSSSSGMPSTSMPPNPYAQPSQPPPQHQQAMYAQYQQQQHHGQQH PQQQQNMNSGYPPHHQQPPQHQQQLPHQQQPHPSGYGIATPSGSAPPIKQEQPMEPHQ HQPQHQHQQPQQQQPFSGYPDYPPSSSNSGYQKPEQQQQQSPLVSDPAPMMSSQPQMS QEMSIQQEAVIETPKIEEPYFAAESQSEPQEVISTTEEKPEVPQEEEEVPTTSQEVEN PKEEEEESSVLAEEVPDVETEEAPYVNGNSDVAPQEEEEEEVEEVLTDAPVEEEEEKK EPIRESEESTSSGNSSQSSPGPPIATPDEETTPVRLEEIENFSGVQETYGEEEEDDEV DLASSAKSSSKDSKEVEDDDDNLSMNTKDMSEAPSETNDGFTEPSTPLMGATPSRKKS YKRPAVVVAKSRKKKSLDDSDDDDFYPARGRGGAKKRGGGGGGSRKKVVEPVAENNGD AAQKSDDDDDEFLMKIDAPAPDPNAMVVEKILNVRIQKVQVPIQKAETEVPLKEEGEE AAETSEAKAEPTTNGASEEVPTEEVEQEQFLIKWKGRAYCHCDWKTLPELLELDKRVE AKIKRFKAKKAVSYIEDDEDFNSDFVIVDRVVDYIIEDDGQEFVLIKWKSLGYDEVTW EPIEHIPEDKVELWRQRQVIDPAKVRDKQRPEPEEWKKLSTKKVWKNGNSLREYQFEG VDWLLYCYYNAQNCILADEMGLGKTVQTITFLSQVYDYGIHGPFLVVVPLSTIQNWVR EFETWTDMNAIVYHGSAHAREVLQQYEVFYDKRHCGAKNWKKNFVKIDALITTFETVV SDVEFLKKIPWRVCVIDEAHRLKNRNCKLLVNGLLAFRMEHRVLLTGTPLQNNIEELF SLLNFLHPQQFDNSATFLEQFGSCQTDDQVQKLQEILKPMMLRRLKEDVEKSLGPKEE TIIEVQLSDMQKKFYRAILERNFSHLCKGTSAPSLMNVMMELRKCCNHPFLINGAEET IMNDFRLAHPDWDDETLAQKALVQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDL LEEFLITMSYPFERIDGNVRGDMRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTAAD TVIIFDSDWNPQNDLQAQARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKA VLQSTTALKAEGTALSKKDVEELLKKGAYGSIMDEENDSAKFNEEDIETILQRRTQTI TLEAGQKGSLFAKATFNSTHNKGDDIDIDDPEFWTKWAEKAQVDVEKATATPDGRELI IEEPRKRTKRFEENKMEDVDSDGSEESGKRKRGNPEKRKRRKGEDEDGDYSSSYRPDE LATSKAEYFKMEKVLANYGWGRWAEIKKYGDLEIEEQDIEHMSRTLLLHCVREFRGDD RVRQFVFNLIKPKEIGANSKYSAGSMYNQGWAALPEFNPPSFALDSSFQRHVHRHANK LMQKIDMLKHLEVYIIAEERSLVEDFEVKWTDIKLKEMPIVAETFVEGWDTDCDKCFL IGCWRHGLENFDAMRADENLCFHEKNIPAWPIATEFWVRFRRLLSTHQRSIHDPVYDK SKWNRKEEVEFLRVLKSYGVKAPKGDQTGEDWTVFRTFSPMFEKRSDEELHEHFMCVL AMCKRAQGNNDLKPIDLKRAMSIDPIAHRKAIKLLNRINVMRKVHTLAESLTVASLMN CQTTGMPSGWSTEHDKELIEICAQGGLDGLAANVLNKPAFAKIVRPSETTLLRRVIEI VTTVETGKWCGVADVEAVNDSDSEDKKEMAVAAAQAQFLQRMQQQQLQQQASSASAAN SANRKAANRKRPNNDNEAKMRAMQQMLMGAAGGAGGAEYANMIALMLMPQMMAAAGGG QNMTAAQQQTINQMLTMLVASAMQQQQPNTSKSSSSQQAQQQAQLQAAVVALAQLAQA TSSTSNSVPGSSSAASTADQQNAAILEALMAMALQPGAMQAMASSGTSTPSAAKKAKP TPAPTPKQDTAQATATAQAAALAAAAAAAQQQQQQQAQAAQQAQQAQVTKSQEELIIL RILEIAGVGMNELAKLNTMSKESKIPMVHKTTKEPLPEAKRPQIRDLTVFAMSHPEWT IDLTLFKDMPGSSTSSATIAAGAKAASNRPTPVATPKAPTPAPKEPQTPSASATCNIK VGNSLQLDNMISVFNRKTGEPLAASKWPKSENLAAWLDANPDYNVNSQSALPAHLALN GKHTDRIGGEPAVVPSVPTTPAPALTPSTPTTTAQVNAQTQLTNAQAAQLMALAAAQQ VQQQQTPTSSKSRSGKFYNLNRMRSNESKVLIANAAAQAAAAQSQQDKITQQQLEMLQ MQMILQQYQQAAAIQQLMYGGYNMPSTSSASSTNNQAATMAALAAAQAAQVASVPSTP TTKQPKFQAASSTASTSSAPAPAATSSATPAAASSSTPSASQAAATSSANSMDDINPL LLTALLQNPQVLNQMIMSDPNTLAMFAAAAQQQPSSTKKSK" CDS join(1490520..1490548,1491184..1491769,1496588..1496686) /gene="CBG22298" /locus_tag="CBG_22298" /standard_name="CBG22298" /product="Protein CBG22298" /note="contains similarity to Interpro domain IPR005749 (Ribosomal protein L15, bacterial-type)" /note="Predicted" /db_xref="GOA:A8Y206" /db_xref="InterPro:IPR005749" /db_xref="InterPro:IPR021131" /db_xref="InterPro:IPR036227" /db_xref="UniProtKB/TrEMBL:A8Y206" /protein_id="CAP38926.1" /translation="MNAPVIRKIRTRREYIPLSLVEFARLIDLGWINPRLPIDVSTLW ATQKFQINPKILQYNFDLTEKGADSFPYPIDIEVQYATQSAIAAVEKAGGRVRTAYYD VESLEAAVNPKAWFEKGRVVPRRKTPPASLIEYYMDAKNRGYLCEETEIEKERQLSAD VRGYELTETLKITSALKSIDQVFHGIPSGCVVSLADRKVFAPKNETYQGNQEQQEKLM GHHRMLVQFWNSIFCEEIC" assembly_gap 1492107..1492386 /estimated_length=280 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(1496876..1496956,1497007..1497237,1498558..1498629, 1498675..1498825,1498882..1498952,1499002..1499118, 1499183..1499350) /gene="CBG22299" /locus_tag="CBG_22299" /standard_name="CBG22299" /product="Protein CBG22299" /note="contains similarity to Pfam domain PF01482 contains similarity to Interpro domain IPR002485 (Domain of unknown function DUF13)" /note="Predicted" /db_xref="InterPro:IPR006342" /db_xref="UniProtKB/TrEMBL:A8Y207" /protein_id="CAP38927.2" /translation="MNSIIFKYSFLCFSIFLFIILLHHSDTISQTVLSLTHPIPIYYS TWHKCVQRQLLNTNETPETFWKNFVKRSRECDKSSNIWENMRVIALKNQDEMKYAVLP VKKSSNNVFVTLGIGQDITAEEAFQKEMTKINQNVTFYGADPIVEGNSEKYSTIGKFF PFAIGAEAGFSIASVLQDGDYKDVSVVHVDIYYFLSQVLKENKIDYLWMDTEFAEYEL FNIFYKNEKLSRMDIAFCQMSLEVHNPSLEQKKKFKDFIEKLIEENVYGFFFAEDVSH IRLWLFNFGSKYCVEKFLLF" CDS join(1500286..1500403,1500453..1500597,1500642..1500732, 1500782..1500853) /gene="CBG25193" /locus_tag="CBG_25193" /standard_name="CBG25193" /product="Protein CBG25193" /note="contains similarity to Pfam domain PF04145 Ctr copper transporter family contains similarity to Interpro domain IPR007274 (Ctr copper transporter)" /note="Predicted" /db_xref="GOA:B6IM18" /db_xref="InterPro:IPR007274" /db_xref="UniProtKB/TrEMBL:B6IM18" /protein_id="CAS00948.1" /translation="MNMTTMAPIGRKHPKMWQWYHIELNDVILFQEWKVQDSGTMIWS CFVVGFAGILLEFLKYSGWAVSEKILPAEKRTKYGGILVPSDSRFWTNHIIQSFYHFW QTLLAFLLMNIYMTFNIYICLSVCLGLAIGHFFFGSRVH" CDS join(1501047..1501134,1501190..1501307,1501771..1501916, 1502072..1502280,1502324..1502415,1502469..1502605, 1502651..1502730) /gene="CBG22300" /locus_tag="CBG_22300" /standard_name="CBG22300" /product="Protein CBG22300" /note="contains similarity to Pfam domain PF04145 Ctr copper transporter family contains similarity to Interpro domain IPR007274 (Ctr copper transporter)" /note="Predicted" /db_xref="GOA:A8Y208" /db_xref="InterPro:IPR007274" /db_xref="UniProtKB/TrEMBL:A8Y208" /protein_id="CAP38928.2" /translation="MSGPFMHMYFHTQPQDTVLFKTWNVTDAGTMAWVCAVIVVAGIM LEAMKFGRWKIEKWQKRREEVLTKSYFTRLFSPIHVAQSILFMIQLCFSYILMLIFMT FSVWLGLAVVVGLGIAKTFFQKMMMDMMEMYFHFRIQEPILFRQWKPTDTPGYVFSCI SIFIIAFCLELLKFGRQWMTRKPRPFLVTDVCCSTSEGIWDIPETSEEPPRGKISVVP FTMESISGWKHTVSSCLFFAQNFVEYSLMLIAMTYNYPFLLSLLGGHALGYFLVGPLM TIKENDAAGTCCS" CDS join(1503959..1504036,1504084..1504184,1504234..1504342) /gene="Cbr-smo-1" /locus_tag="CBG_22301" /standard_name="CBG22301" /product="Protein CBR-SMO-1" /note="C. briggsae CBR-SMO-1 protein; contains similarity to Pfam domains PF00240 (Ubiquitin family) , PF11976 (Ubiquitin-2 like Rad60 SUMO-like) contains similarity to Interpro domains IPR000626 (Ubiquitin), IPR022617 (Small ubiquitin-related modifier, SUMO)" /note="Predicted" /db_xref="GOA:G2J6V9" /db_xref="InterPro:IPR000626" /db_xref="InterPro:IPR022617" /db_xref="InterPro:IPR029071" /db_xref="UniProtKB/TrEMBL:G2J6V9" /protein_id="CAP38929.1" /translation="MADDAANTAPTGGDNAEYIKIKVVGQDSNEVHFRVKFGTSMAKL KKSYADRTGVSVNSLRFLFDGRRINDEDTPKSLEMEDDDVIEVYQEQLGGQ" CDS complement(join(1504747..1505028,1505274..1506056, 1506104..1506532)) /gene="CBG22302" /locus_tag="CBG_22302" /standard_name="CBG22302" /product="Protein CBG22302" /note="contains similarity to Pfam domains PF05195 (Aminopeptidase P, N-terminal domain) , PF00557 (Metallopeptidase family M24) contains similarity to Interpro domains IPR007865 (Aminopeptidase P N-terminal domain), IPR000994 (Peptidase M24, structural domain), IPR001131 (Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site)" /note="Predicted" /db_xref="GOA:A8Y210" /db_xref="InterPro:IPR000994" /db_xref="InterPro:IPR001131" /db_xref="InterPro:IPR007865" /db_xref="InterPro:IPR029149" /db_xref="InterPro:IPR036005" /db_xref="UniProtKB/TrEMBL:A8Y210" /protein_id="CAP38930.1" /translation="MTFQLSEKTFKVPVDLFVENRQRLLEALKTKVPANSAVLLQGGV EKNRYNTDAADLPFRQESYFFWTFGVNESEFYGVIDVTTGKTTLFAPRLDPSYAIWDG KINDEKYFKEKYAVDEVFFNDTEKTIAEKLKALAVKNVYLLRAENTDSGDVLTEPKFA GSQDFQLNTQLLYLEMAELRVIKTEKEIDVMRYASKIASEAHRAAMKHMKPGLYEYQL ESLFRHTSYYHGGCRHLAYTCIAASGCNGSVLHYGHANAPNDKFIKDGDMCLFDMGPE YNCYASDITTSFPSNGKFTEKQKIVYNAVLDANLAVLKAAKPGVRWTDMHILSEKVIL EHLKKAGLIVGDIDKAVEARVGAVFMPHGLGHFIGLDVHDCGGYMGDATPRSTLPGLK SLRTTRTLKDRMAITIEPGCYFIDFLLDEALADPVKSAFLVKAEIDKYRGSGGVRIED DVIIRAAGNENLSDLPRTVEEIENFMASGGQWTEKDIEHRVSEFLSK" CDS complement(join(1507667..1507840,1507979..1508154, 1509976..1510331,1512667..1512987,1514144..1514214, 1514269..1514442,1514494..1514634)) /gene="CBG22303" /locus_tag="CBG_22303" /standard_name="CBG22303" /product="Protein CBG22303" /note="contains similarity to Pfam domains PF00106 (short chain dehydrogenase) , PF00293 (NUDIX domain) contains similarity to Interpro domains IPR020476 (NUDIX hydrolase), IPR020084 (NUDIX hydrolase, conserved site), IPR002347 (Glucose/ribitol dehydrogenase), IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR000086 (NUDIX hydrolase domain)" /note="Predicted" /db_xref="GOA:A8Y211" /db_xref="InterPro:IPR000086" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR015797" /db_xref="InterPro:IPR020084" /db_xref="InterPro:IPR020476" /db_xref="InterPro:IPR036291" /db_xref="UniProtKB/TrEMBL:A8Y211" /protein_id="CAP38931.2" /translation="MTCALVVGATSTLGKAIVRRLAFAGFKVAAAGDCPNSVGKVAED NKKVGGDVTAFSLNVSNPEHRKELIQKVAEKLGGLDTLVIVPPQNEIVGEIVETSDTD FDKLFADMLTTPFRLSQAALPQLAKSENGSIIYITSCMGYTPSIDMGLYSVASNSVLS LTKAVAQSAAKKGVRVNSVVSGMVEGDGSGAVWDQTNGEEARQIKQHLEAMIPLGRLG RPADVASYVEFLASTRSSCAASSNKGEETCNTINHQHHLHHKIIKIATSPQSTTTTTK HRSQSTGTSIDITTGSPINILGQNGTGGGGEEGGKVEGGGETKKCMISAWKARESERN KVRLRDTDGFRCRAAALCIKGTGNETLVLLVSGGKDGGKWVIPGGGIEKDECAEQAAH RELMEEAGVRATIVKSIGMFQDDTRKHRTQVFLMEVSEELDTWEENEYGRQRIWMNVL ESKEKVKQSHRQILDALMPR" assembly_gap 1510632..1511631 /estimated_length=1000 /gap_type="between scaffolds" CDS complement(join(1514824..1515702,1515731..1516456, 1516506..1516831,1516877..1517084,1517397..1517507)) /gene="Cbr-pqn-59.2" /locus_tag="CBG_22304" /standard_name="CBG22304" /product="Protein CBR-PQN-59.2" /note="C. briggsae CBR-PQN-59.2 protein ;" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8Y212" /db_xref="InterPro:IPR009060" /db_xref="UniProtKB/TrEMBL:A8Y212" /protein_id="CAP38932.2" /translation="MGIKSDKKATSDQARLQRLTLDGVSGTEEDMQLMIKTITETTGC TSAQAEIALLDRDMVLYSAIDYILEAGDKLDSWTEQKGPKKEKKKSDEGSFNSRNFQG RGGRGGSTGFVDRGGRGRSSGATPRESRDTRDNNRENREPREFREPREPRGDYKEGGR GGDFKEGGSSRPSRGGFERPYVGRGRGGGSRGGYSRAVAPSSTLDPDAFTADLEDNST KVDTNVTEVQPPVEESVTATVPTSSAPAPISFAAVAAAAHRKEALRKQQAQNPQPAPP PRRSLSPQPPLPSQAAPEESPVKEEQEPAQFSDEPETSQQQDEGYFQDEQAPAVEEQT PNVSTHHDENVQSSPDQANQAWTNQLKSSLGIGIHDAQEAVSPTPSAAPVQTLPDPGV EFVGTTAPTNLHDYSFGFVDAPPSPQLPQPSEPSAASISTNNENLFNSPRMIPKQVEV SLSNWNFPERSLPNGDYNLKSSSPPLGYGQSNRGLSYDTSSSSYPPTDRLSSSNKFNN PGQLPSQQSSQQPQQQVQQPTQQQNTPPAQQQQGHPQHPQQHMLFAPQMPYGYMNSYM NMYNPMGGVRDDQYAALMQYGMGVDLSNLSTILPQSASQTLTSNAPQVQSGQQRETHG LMDFNKFGSQSGRDQQPQQPSNVGPPPGFQANSYMQQPNLSSLFMQQPYPAAPHTFGF MNMMPNVGNSAGGGRQMYGQDDERKSYDKMAGAKPSTAQNPHSQYQHNGGNLGKYGNM NNKPYNWGN" CONTIG join(CAAC03002119.1:1..5892,gap(413),CAAC03002120.1:1..10679,gap (42),CAAC03002121.1:1..6752,gap(4530),CAAC03002122.1:1..23990,gap (76),CAAC03002123.1:1..3508,gap(190),CAAC03002124.1:1..23947,gap (1158),CAAC03002125.1:1..2775,gap(8987),CAAC03002126.1:1..12689,gap (123),CAAC03002127.1:1..19351,gap(10),CAAC03002128.1:1..15115,gap (529),CAAC03002129.1:1..9717,gap(2782),CAAC03002130.1:1..19573,gap (154),CAAC03002131.1:1..36040,gap(310),CAAC03002132.1:1..7466,gap (331),CAAC03002133.1:1..16321,gap(10),CAAC03002134.1:1..2358,gap (281),CAAC03002135.1:1..53409,gap(670),CAAC03002136.1:1..9788,gap (1758),CAAC03002137.1:1..8450,gap(10),CAAC03002138.1:1..37578,gap (1038),CAAC03002139.1:1..12996,gap(209),CAAC03002140.1:1..37152,gap (1000),complement(CAAC03004567.1:1..6205),gap(1000),complement (CAAC03001666.1:1..22231),gap(607),complement (CAAC03001665.1:1..3987),gap(1878),complement (CAAC03001664.1:1..39216),gap(142),complement (CAAC03001663.1:1..11423),gap(175),complement (CAAC03001662.1:1..6850),gap(238),complement (CAAC03001661.1:1..5317),gap(424),complement (CAAC03001660.1:1..19212),gap(10),complement (CAAC03001659.1:1..13146),gap(617),complement (CAAC03001658.1:1..12442),gap(157),complement (CAAC03001657.1:1..18709),gap(320),complement (CAAC03001656.1:1..1687),gap(10),complement(CAAC03001655.1:1..2632) ,gap(212),complement(CAAC03001654.1:1..7815),gap(458),complement (CAAC03001653.1:1..3652),gap(315),complement (CAAC03001652.1:1..2966),gap(87),complement(CAAC03001651.1:1..4451) ,gap(608),complement(CAAC03001650.1:1..1422),gap(1106),complement (CAAC03001649.1:1..7903),gap(63),complement(CAAC03001648.1:1..1156) ,gap(10),complement(CAAC03001647.1:1..2090),gap(1046),complement (CAAC03001646.1:1..6926),gap(505),complement (CAAC03001645.1:1..3162),gap(536),complement (CAAC03001644.1:1..2378),gap(22),complement(CAAC03001643.1:1..5897) ,gap(10),complement(CAAC03001642.1:1..26106),gap(1086),complement (CAAC03001641.1:1..4676),gap(10),complement(CAAC03001640.1:1..7316) ,gap(662),complement(CAAC03001639.1:1..23701),gap(10),complement (CAAC03001638.1:1..16287),gap(282),complement (CAAC03001637.1:1..4438),gap(12),complement(CAAC03001636.1:1..8629) ,gap(728),complement(CAAC03001635.1:1..1726),gap(10),complement (CAAC03001634.1:1..6787),gap(118),complement (CAAC03001633.1:1..77161),gap(169),complement (CAAC03001632.1:1..10557),gap(1051),complement (CAAC03001631.1:1..43251),gap(325),complement (CAAC03001630.1:1..15424),gap(211),complement (CAAC03001629.1:1..25211),gap(260),complement (CAAC03001628.1:1..9503),gap(586),complement (CAAC03001627.1:1..80201),gap(10),complement (CAAC03001626.1:1..20121),gap(739),complement (CAAC03001625.1:1..24471),gap(168),complement (CAAC03001624.1:1..22733),gap(6465),complement (CAAC03001623.1:1..29430),gap(2996),complement (CAAC03001622.1:1..35511),gap(521),complement (CAAC03001621.1:1..61646),gap(10),complement (CAAC03001620.1:1..8848),gap(551),complement (CAAC03001619.1:1..33040),gap(85),complement (CAAC03001618.1:1..10984),gap(978),complement (CAAC03001617.1:1..1864),gap(123),complement (CAAC03001616.1:1..2686),gap(5312),complement (CAAC03001615.1:1..15138),gap(661),complement (CAAC03001614.1:1..3079),gap(315),complement (CAAC03001613.1:1..22557),gap(7709),complement (CAAC03001612.1:1..20767),gap(546),complement (CAAC03001611.1:1..31859),gap(44),complement (CAAC03001610.1:1..11265),gap(498),complement (CAAC03001609.1:570..14616),complement(AC087231.1:56477..58005), complement(CAAC03001608.1:1..44122),gap(409),complement (CAAC03001607.1:1..1201),gap(172),complement (CAAC03001606.1:67..4615),complement(AC087231.1:5460..6007), complement(CAAC03001605.1:102..1055),complement (AC087231.1:3974..4505),complement(CAAC03001604.1:1..3059),gap(734) ,complement(CAAC03001603.1:1..5547),gap(488),complement (CAAC03001602.1:1..2581),gap(10),complement (CAAC03001601.1:1..37812),gap(280),complement (CAAC03001600.1:1..18245),gap(1000),CAAC03004610.1:1..10018) //