LOCUS HE601042 567514 bp DNA linear CON 17-SEP-2015 DEFINITION Caenorhabditis briggsae AF16 supercontig from assembly CB4, cb25.fpc0106. ACCESSION HE601042 CAAC03000000 CAAC02000466 VERSION HE601042.1 DBLINK BioProject:PRJNA10731 BioSample:SAMEA3138181 KEYWORDS . SOURCE Caenorhabditis briggsae ORGANISM Caenorhabditis briggsae Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 567514) AUTHORS Howe K.L. CONSRTM WormBase Consortium JOURNAL Submitted (03-OCT-2011) to the INSDC. WormBase group, European Bioinformatics Institute, Cambridge, CB10 1SA, UNITED KINGDOM. REFERENCE 2 (bases 1 to 567514) AUTHORS Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K., Durbin R., Waterston R.H. TITLE The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics JOURNAL PLoS Biol. 1(2), E45-E45(2003). PUBMED 14624247 REFERENCE 3 (bases 1 to 567514) AUTHORS Ross J.A., Koboldt D.C., Staisch J.E., Chamberlin H.M., Gupta B.P., Miller R.D., Baird S.E., Haag E.S. TITLE Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination JOURNAL PloS Genet. 7(7), E1002174-E1002174(2011). COMMENT Details of C.briggsae assembly version CB4: To improve upon the C. briggsae nuclear genome assembly CB3, 167 AF16/HK104 advanced-intercross recombinant inbred lines were successfully genotyped at 1,032 single nucleotide polymorphism (SNP) markers. The resulting data were used to estimate high-density genetic maps. Sequences were assembled by combining the physical and genetic positions of the SNPs to inform the process of ordering and orienting the cb25 supercontigs into chromosome assemblies. 37 of the cb25 fingerprint contigs were split into 100 supercontigs to resolve discrepancies between the physical and genetic orders of SNPs. 638 sequence supercontigs comprise the CB4 assembly. The total nuclear genome content decreased from cb25 to cb4 because of the removal of three supercontigs containing mitochondrial genome sequence (totaling 20.1 kbp). Assembly_name: CB4 Assembly_program: Phusion Seq_technoloy: capillary (whole-genome-shotgun) Seq_coverage: 10x Annotation details: Coding seqences below are the result of integration and manual review of the following data : computer analysis using the programs Genefinder (version 980506; P. Green, unpublished data), FGENESH (Salamov and Solovyev 2000), TWINSCAN (Korf et al. 2001), and the Ensembl annotation pipeline (Clamp et al. 2003); similarity to other proteins from BlastX analyses (http://blast.wustl.edu); sequence conservation with C. elegans using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000); individual C. briggsae GenBank submissions; and personal communications with C. briggsae researchers. tRNAs are predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964). FEATURES Location/Qualifiers source 1..567514 /organism="Caenorhabditis briggsae" /strain="AF16" /mol_type="genomic DNA" /note="supercontig cb25.fpc0106" /db_xref="taxon:6238" CDS join(176..221,730..1055) /gene="CBG05216" /locus_tag="CBG_05216" /standard_name="CBG05216" /product="Protein CBG05216" /note="contains similarity to Pfam domain PF02825 WWE domain contains similarity to Interpro domains IPR004170 (WWE domain), IPR018123 (WWE domain, subgroup)" /note="Predicted" /db_xref="GOA:A8WZE8" /db_xref="InterPro:IPR004170" /db_xref="InterPro:IPR018123" /db_xref="InterPro:IPR037197" /db_xref="UniProtKB/TrEMBL:A8WZE8" /protein_id="CAP25758.2" /translation="MDMDEDVKPDLAALQAAWANGWRMASTVNATFMWLYKARGDGWW RFDPRDERLVEEGFQAGQEMMFITILGNQYEIDFDLNLQTPVLNRSIPREIWRVTAEE FDGLVIRGVAGVTDPIYWDVK" CDS join(3024..3333,3640..3714,3760..3837,3885..4204) /gene="CBG05218" /locus_tag="CBG_05218" /standard_name="CBG05218" /product="Protein CBG05218" /note="contains similarity to Pfam domain PF02825 WWE domain contains similarity to Interpro domains IPR004170 (WWE domain), IPR018123 (WWE domain, subgroup)" /note="Predicted" /db_xref="GOA:A8WZE9" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR004170" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR018123" /db_xref="InterPro:IPR037197" /db_xref="UniProtKB/TrEMBL:A8WZE9" /protein_id="CAP25759.1" /translation="MFSSSSSGAGSSSGGGSGSGSGFPMQPNLPGSHQPRCAICLHAV YMPFRMPCGHINCFNCQKNVGTRCTLCRQEFNVGLFNYTQQINLKEAVHPNYVDAQPD SDGRVFVQDMVYERDEDVKPSVEELKAAMAAAAVAAQPVTTEGKEVAPPKMPYFHDRN SKVFWLYQSRSVKEKKEAWWRFNGRMELDIEEAFQRRDDGYMVYIDGQNYSIDFDEMI QFRMSNPAVSRKIKRVNSDEFDQLHVLGIGGVMAKTGEWEVK" tRNA complement(5618..5699) /gene="CBG29017" /locus_tag="CBG_29017" /standard_name="CBG29017" /product="RNA transcript CBG29017" /note="C. briggsae predicted tRNA" tRNA 5898..5979 /gene="CBG28349" /locus_tag="CBG_28349" /standard_name="CBG28349" /product="RNA transcript CBG28349" /note="C. briggsae predicted tRNA" CDS join(7835..8060,8105..8190,8238..8744) /gene="CBG28006" /locus_tag="CBG_28006" /standard_name="CBG28006" /product="Protein CBG28006" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG02" /protein_id="CAR98832.1" /translation="MDEENPTDQPQVDLPANNDDAEGAPEAMEVQEDAQDAPETQEAP EAPEEQVQEEDKVYREVHVTIPEIGMIAQRYFLEQRNGIVKLLDNAPAGAIQLPNLPV PEVPIVRPIPIRPDGAVRPETAPAIQEIGPPVQPEPVFQEVVPEAAPVEQPQPIPAGL QMIPVFRLTQPVNQIAHSMIALLQAPPTQVVINYFPAPAPQEPVNLNPALVFNQYPLN LEQHIVPPPLYPYGHPGLAMTPNPYALWNPGDGLLGDFDNWNLRAPLLPPQDPL" CDS join(9538..9546,10427..10543,10601..10709,11109..11216, 11266..11345,11565..11668,11717..11813) /gene="CBG28007" /locus_tag="CBG_28007" /standard_name="CBG28007" /product="Protein CBG28007" /note="contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)" /note="Predicted" /db_xref="InterPro:IPR003582" /db_xref="UniProtKB/TrEMBL:B6IG03" /protein_id="CAR98833.1" /translation="MKHYATNAVNCDNIYSDDACTMIYGSSVMVGTTTERPLLCFMLN GERSEEMKRISISTCPKTCGYCCQTEPFDCNNSPFPRINCALVTSRMCRDPQWREVLI EDCPNVCGFCLEGGCYDKAVDCTTDISICMNVGMQDFVKEYCRKTCGFCRPTATTTPD PEFRGTNPNCVDYNTNCASWSYRGYCTSPFYSYETKFANCAATCSLC" CDS join(17836..17856,19293..19345,20648..20795,21518..21736) /gene="CBG05220" /locus_tag="CBG_05220" /standard_name="CBG05220" /product="Protein CBG05220" /note="Predicted" /db_xref="GOA:A8WZF0" /db_xref="UniProtKB/TrEMBL:A8WZF0" /protein_id="CAP25760.2" /translation="MDSWLVFPKEWCNQLKCKNREPDFSNPDTTCVCHHNPADYPYDI CKNLFPRDSDFANRQAILDKNRERSQGTVEYVELLGKRVSTSVVSYIIVGLLLSVSVL TLVMLVLGGKRLRQKRAERQRQIRLARETLILQRADDDRYLPSA" CDS complement(join(22686..22786,23713..23830,23879..23977, 25562..25614,26194..26260)) /gene="Cbr-cpx-2" /locus_tag="CBG_05222" /standard_name="CBG05222" /product="Protein CBR-CPX-2" /note="C. briggsae CBR-CPX-2 protein; contains similarity to Pfam domain PF05835 Synaphin protein contains similarity to Interpro domain IPR008849 (Synaphin)" /note="Predicted" /db_xref="GOA:A8WZF1" /db_xref="InterPro:IPR008849" /db_xref="UniProtKB/TrEMBL:A8WZF1" /protein_id="CAP25761.2" /translation="MESAATGFVFSLSSDQLSGIVKGFDRLTGEPIEPEMEDPEVVAA RQEQEKRRKDKHRRMEADRERMRQQIRNKYNLKKKDEAREQEIAGRIAGNRKTPEQVA LETLHAEEDESLMTAINDTFEKAKNTVASACTTVKNVVSLWKT" CDS join(30436..30486,30878..30973,31020..31109,32436..32501) /gene="Cbr-ceh-28" /locus_tag="CBG_05223" /standard_name="CBG05223" /product="Protein CBR-CEH-28" /note="C. briggsae CBR-CEH-28 protein; contains similarity to Pfam domain PF00046 Homeobox domain contains similarity to Interpro domains IPR020479 (Homeobox, eukaryotic), IPR000047 (Helix-turn-helix motif), IPR017970 (Homeobox, conserved site), IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:A8WZF2" /db_xref="InterPro:IPR000047" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="InterPro:IPR020479" /db_xref="UniProtKB/TrEMBL:A8WZF2" /protein_id="CAP25762.2" /translation="MQSAQITTSIPLLPNETVNELEERFKKQRYVTATEREELAQCLG LTATQVKIWFQNRRYKCKRLAQDRTLQLTQIPFNPMFASAFPFGINSFGSVPSSSS" CDS join(34266..34538,34595..34716,35207..35353,35422..35520, 35566..35678,35722..35861,35906..35954,36238..36350, 36397..36618,41247..41410,41458..41566,41617..41712, 41762..41899) /gene="CBG05224" /locus_tag="CBG_05224" /standard_name="CBG05224" /product="Protein CBG05224" /note="contains similarity to Pfam domain PF02995 Protein of unknown function (DUF229) contains similarity to Interpro domain IPR004245 (Protein of unknown function DUF229)" /note="Predicted" /db_xref="GOA:A8WZF3" /db_xref="InterPro:IPR004245" /db_xref="InterPro:IPR017850" /db_xref="UniProtKB/TrEMBL:A8WZF3" /protein_id="CAP25763.2" /translation="MIQTIPWGAVVISGCMIVYVIFLGFASYSPSFENKNFYGEYPAI AGNLPSIYRGMRSDDSNLNSSISTVSYDPWDLCDLPKYDVWDEEIILYVNPNKDPLKD CDRTFKPFTELKNSSWRVVSLNKNLECKTRCHRRKSERQNEISKWNFTQGPVDCEFLE AVCSENKEDVYGYLHSQVIPKPPIEKPKIDTAGLMQFDVFVILLDSLSYSQGKRSLPR TLSYFTNHMDGVIFPYMNKIGENSRPNGIPIWFGKSLEKIDRSLFDEEVIPPDWSHKY FCKTFKDNETNIFSEFHDYGYRTLLAEDWAEGTMNWPNYQKKFGWVWAIDLGHNSENG FTHADKDFHNFLIEHRKKLDNSFVFLLGDHGLRFGGVRNTFVGALDVNNPFTAISIPK VLRNTTNILEYVAENAKNIQSHYDTRATILDIMKYQSAKSFTETEARQFPEEKGYSYI RKQPSTPRNCRNMPIPLEYCICQFKKSKVPRNTKTAKEIGKALAFAVNTQIEDGNFTG NCIKMEWEKTLSLEMYDHQFKGATLYTVTAQMKEPSKAEFKSNVKIVDGKIKVLGMVE RSNRYGKTADCIKSEYHRPYCYCKNQNG" CDS join(42313..42516,42564..42676,42821..43217,43272..43452, 43660..43949) /gene="Cbr-str-10" /locus_tag="CBG_05226" /standard_name="CBG05226" /product="Protein CBR-STR-10" /note="C. briggsae CBR-STR-10 protein; contains similarity to Pfam domains PF10319 (Serpentine type 7TM GPCR chemoreceptor Srj) , PF10327 (Serpentine type 7TM GPCR chemoreceptor Sri) , PF10318 (Serpentine type 7TM GPCR chemoreceptor Srh) , PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd) , PF10326 (Serpentine type 7TM GPCR chemoreceptor Str) (2)contains similarity to Interpro domains IPR019423 (7TM GPCR, serpentine receptor class j (Srj)), IPR019429 (7TM GPCR, serpentine chemoreceptor class i (Sri)), IPR019422 (7TM GPCR, serpentine receptor class h (Srh)), IPR019421 (7TM GPCR, serpentine receptor class d (Srd)), IPR019428 (7TM GPCR, serpentine receptor class r (Str))" /note="Predicted" /db_xref="GOA:A8WZF4" /db_xref="InterPro:IPR019428" /db_xref="UniProtKB/TrEMBL:A8WZF4" /protein_id="CAP25764.1" /translation="MADSYLSWVSLSHAIAIFGFLSSIIAGSILISLNLFYVKKVFGS YKYLVIIFTCLGMVFATLEVVFFPNMHSFNSATLYFTLSPLFGLSTNMLSASLGLFFR NSTSENKLIFFEGWRSLTWVAYVLYFGAQWAIGAYNFVKTDEVAKNYFREEMILRYNV CVDNLSSLAMVAFDPSSGDIRWWNLMTVVNMSFIMAIQYAIMIHCGYSMFTKMEEKLQ NFSTMHKNHHKQLFKTLMLQITVPSIFLFIPLSFIIYIPLLEIQLSLPTGVLLSGFSL YPAADSIMVMYIVAEYRNTLKSHALSSIIAGSTNQPVNSKVCLLGTSQLQRAVFSEVM AIVPFACVNSASDTNRATVAQPELARHLQQRANYSRGKFNYSRGLHDKDFEDLFFMSP DL" CDS join(44944..44991,45071..45448) /gene="CBG05227" /locus_tag="CBG_05227" /standard_name="CBG05227" /product="Protein CBG05227" /note="Predicted" /db_xref="InterPro:IPR019428" /db_xref="UniProtKB/TrEMBL:A8WZF5" /protein_id="CAP25765.2" /translation="MHKNHHKQLFKTLMLQITVPSIFEIELSLPTEVLLSGFSLYPAA DSIMVMYIVSEYRNKIKRDCDGLEVTLNGRFYRNTARFVEIRVLLQNESRGTLRKPDD RVVVTWILKLWKFIINSDGRSSCIVGIGQSARQLEKLPC" CDS complement(join(45694..45927,45976..46171,46220..46600, 46643..46875,46922..47149)) /gene="CBG28008" /locus_tag="CBG_28008" /standard_name="CBG28008" /product="Protein CBG28008" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG04" /protein_id="CAR98834.1" /translation="METSGQSSSRQAKSAALSRFTKTSCKTFQDEFEALKDKNDHILC TRYPRQTLEMLLKKPDMKKVVHMYRKQMFDEQCRKAGKDPKQCGSPPVENTPAVKAFC KKTNDFDFASLSSYAAEIVNIENLLTELLEKMEHNEKDHELSKTNAQEIIKINSEWEK LMVRRRDLIQAAIDEAHRECDEILASIPTELPDSTNNSNQFYINQALELKRTAFNAHA DELIEMRMKLVESYPDTEGEGASKPMQDATIKLRKISSGEAPFSKMIKALDFYQPIVA KKKLDADTKLTQEAGNRLMEDVASLCSNEIDYHEHLRELARRVCEMHFFKQIEVQKVH AFLDQTRKKNDTLIKCSDHLELLEKQLEKFIYEFEDNKKSDFDEVLEVEKTEEMKEHE LRRMEMIRNHRICFAQPFLQPMYCKNGRRLV" CDS complement(join(47877..47912,48277..48469,49302..49697, 49742..49959,51693..51902)) /gene="CBG28009" /locus_tag="CBG_28009" /standard_name="CBG28009" /product="Protein CBG28009" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG05" /protein_id="CAR98835.1" /translation="MFQTTSVKAPPVNAGKDNSELLKYELDTMKRKNLESIERRYGIP THKILISKPDITALTDHYKALALIEHGGKSNKKTRHTAKAQLIERLSMAIGKVGTEVL SAFDNEVNRVEKLVLEIIDEIVSTEKDIETVREMIKFMITSSIESQKEFHEIRQALQN QFDESYNAAHAMMNTISREWEDYKRLQVSEEEKNVIGQKLTQKQNAFKSLFFRAHAFR STIRSISADISDEFQPSKATVAPVLRELSSLGVTPEYTVMTGHVGQFFSLRPIHACKD ASIPETAQSRLVEDITVLSTDQLNYTTKLLVLARRACDCEFQKRIELQNVFILLSKTN KKDDLKPMFPDDEFDE" CDS join(54365..54619,54665..54786,54833..54979,55033..55128, 55175..55287,55351..55490,55534..55622,55667..55913, 55957..56178,56224..56387,56436..56544,56588..56683, 56752..56901) /gene="CBG05229" /locus_tag="CBG_05229" /standard_name="CBG05229" /product="Protein CBG05229" /note="contains similarity to Pfam domain PF02995 Protein of unknown function (DUF229) contains similarity to Interpro domain IPR004245 (Protein of unknown function DUF229)" /note="Predicted" /db_xref="GOA:A8WZF6" /db_xref="InterPro:IPR004245" /db_xref="InterPro:IPR017850" /db_xref="UniProtKB/TrEMBL:A8WZF6" /protein_id="CAP25766.2" /translation="MTSKLKAVYYIPWRALIVTGCFATYFIILGFTMLVPVLTPQHYF VAHRPVFGGSSRQITKNITKTNYWDKCELPVYDFYDEEILPYVEPNENPIPYCNPDYK PLTTPINGSWDLKYSRLKLKCRTRCHWHKSERVNKIGNWSYKPGPVDCEVLEAVCAKN GTDVYGYLHTQVIPTQQKKPEVVTKKWKQYDVTVILIDSLAYSQARRSLPRTITYMSN HMDAVIFPYINKVGDNSRPNGAALWFGKLLEKLDRSLFDEENVAPDWTQEYMCNVYKD NETSLFHEFQNYGYKTLLAEDWAEGTLNWPNCKGFDKPPIDHYMRPFQNAMERKNHGV EVTKNHLNGDMCREYHHTLLDYLGQFLDAYPDQRKFSWVWLSVLGHDTENSIAHSDND FYSFLVKHRKQLDNSFVFFMGDHGLRFGNVRKTFVGALDVNNPFLSISIPKELRKNSR MLSVMRENARKLQTHFDTRSALLDILKFQSTSDFADTAPLEISGEKGYSYLREQPNII RNCKNTPIPIQYCICQFNKTAVSTKSRLALSIGDQIAYSVNEELQEGKLTKHCIEMKV DRIFSLLKFDQSLNGSSLYTAVVQMKLPSQAIFKANVKILPTGKVRVLGMIERTNSYW NTANCISSEHHRPYCYCKNQNETYW" CDS join(58225..58383,58428..58598) /gene="CBG28010" /locus_tag="CBG_28010" /standard_name="CBG28010" /product="Protein CBG28010" /note="contains similarity to Interpro domain IPR004245 (Protein of unknown function DUF229)" /note="Predicted" /db_xref="InterPro:IPR004245" /db_xref="UniProtKB/TrEMBL:B6IG06" /protein_id="CAR98836.1" /translation="MLFSVVTPLHFFDPHQQIFKSSVHQICEKNTKLSYWDKYELPVY NFHDEEILPNVNPNVNPISDCHADHKPLTILIKGSWGLKHPKLKLKCRTRGGGYLLGA IILFLLG" CDS join(61290..61343,61401..61523,61568..61658,61709..61862, 61912..61990) /gene="CBG05231" /locus_tag="CBG_05231" /standard_name="CBG05231" /product="Protein CBG05231" /note="contains similarity to Pfam domain PF00179 Ubiquitin-conjugating enzyme contains similarity to Interpro domains IPR023313 (Ubiquitin-conjugating enzyme, active site), IPR000608 (Ubiquitin-conjugating enzyme, E2)" /note="Predicted" /db_xref="GOA:A8WZF7" /db_xref="InterPro:IPR000608" /db_xref="InterPro:IPR016135" /db_xref="InterPro:IPR023313" /db_xref="UniProtKB/TrEMBL:A8WZF7" /protein_id="CAP25767.1" /translation="MAGIAGGRLAEERKLWRKDHPFGFIAKPTKKADGTLDLFNWDCA IPGRKDTIWEGGLYRIRMVFKDDFPSTPPKCKFVPPLFHPNVYPSGTVCLSLLDEHKD WKPSIGIKQLLIGIQDLLNNPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAIKYSADVV QKEMLQ" assembly_gap 62727..67139 /estimated_length=4413 /gap_type="within scaffold" /linkage_evidence="unspecified" tRNA complement(67749..67830) /gene="CBG28644" /locus_tag="CBG_28644" /standard_name="CBG28644" /product="RNA transcript CBG28644" /note="C. briggsae predicted tRNA" CDS join(68430..68464,68511..68650,68705..68838,68882..69040, 69206..69442,69860..69952,70766..70963,71012..71272, 71316..71397,71697..71878) /gene="CBG05232" /locus_tag="CBG_05232" /standard_name="CBG05232" /product="Protein CBG05232" /note="contains similarity to Pfam domain PF07819 PGAP1-like protein contains similarity to Interpro domain IPR012908 (GPI inositol-deacylase PGAP1-like)" /note="Predicted" /db_xref="GOA:A8WZF8" /db_xref="InterPro:IPR012908" /db_xref="InterPro:IPR029058" /db_xref="UniProtKB/TrEMBL:A8WZF8" /protein_id="CAP25768.1" /translation="MARYIIPSVTISALYGVYKSFWPDSNDRNKILSVEDAVKLLNVN ANTSEALRYIQHTESKEFLKTLNPAAIALLARSGSELCMKIPIKSCVDQKIDVTEALS KFNLGDKWNSSIEWINRVACPEEDLSCSDEWLVRLPSQIERLRRMLQLLFLTTEKSFD VSAIDVDVIPFLFNVYAEFCQSNVDIAVLAIKILSNIVGADEKYAKSMLDSEWLPLIS TMVMNGRSLMERLLSHKVCQNALSSLKSINYRLSSDVYEMHLPDEEPEFDIVLIHGLR GSVAYTWRQKDSDENLLSSCWPKDWLPLDIKRPFRIIGLEYPSYIFHFTGTQQSLQSR SERFKDQLEIAGIGKRPVLFICHSMGGLLAKKLLIDSPDLRKSTIGVLFIATPHKGSP VANWGYSVFQPTEDVVMLSESNVKNKKLNEDFSAVSKEIPVIVSMVETLESNIIANAK SIVVPNKSAVFEQGAVYHIADVHLNLCKPTRDSASYGVIINFLLDCFRESDKKRKV" CDS complement(join(72447..72510,72668..72729,72773..72833, 74089..74274,74329..74467,74526..>74592)) /codon_start=1 /gene="CBG05233" /locus_tag="CBG_05233" /standard_name="CBG05233" /product="Protein CBG05233" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZF9" /protein_id="CAP25769.1" /translation="KRFAFSPPLLVVQLEYSKRKEKRPFLIPFLFRLNCLLPPRETIL LTVLPILLVVNEHKRKGRQEDKKKSGPCRVAFILQTIIGLCSALGSKRVSNCHCSSSS LPVTVAHTYLNRFMSLRFFFFFCTFCNIRQVLRGNSRRCSRKKEYETYQINKIQVNIF NVKCLGDIATRRQSLFSHIRHESQRHLQNLTI" CDS join(80511..80597,81388..81464,81508..81637,81861..82014, 82500..82636,82689..82733) /gene="CBG05235" /locus_tag="CBG_05235" /standard_name="CBG05235" /product="Protein CBG05235" /note="Predicted" /db_xref="GOA:A8WZG0" /db_xref="UniProtKB/TrEMBL:A8WZG0" /protein_id="CAP25770.2" /translation="MDIAKTFDHEPFRHTDPKYKCLCNKMHVKQGCKCILAFLIIVVI IAALLLILNWNIGTWTTVIIHAILLIGVIACAVALLLAMKTEKEKLLLPVAGIAILGA IISIIFLAFTIWSLIDPSGPTGQLVNNFVVSQNASQTEDQGLEENREEIETISAITIV VALAALAASIWVAFVVYKYYMYLKDMKFARVPKNQVHIEITDLKKGINQ" CDS complement(join(83128..83184,83696..83806,84147..84284, 84333..84614,84661..84832,84874..84973,85023..85152, 85205..85315,85367..85431,85479..85674,86208..86342, 89869..89994)) /gene="CBG05236" /locus_tag="CBG_05236" /standard_name="CBG05236" /product="Protein CBG05236" /note="contains similarity to Pfam domain PF00787 PX domain contains similarity to Interpro domains IPR001683 (Phox homologous domain), IPR013032 (EGF-like region, conserved site)" /note="Predicted" /db_xref="GOA:A8WZG1" /db_xref="InterPro:IPR001683" /db_xref="InterPro:IPR011993" /db_xref="InterPro:IPR036871" /db_xref="InterPro:IPR037831" /db_xref="InterPro:IPR037836" /db_xref="InterPro:IPR040842" /db_xref="UniProtKB/TrEMBL:A8WZG1" /protein_id="CAP25771.2" /translation="MVSSSAMARTYGDKPSTSSMEEDLEIEVSMRNASIIDHQYQSEQ HKDHKVLNAFNPTDKTSYSDMIHIDVPDTRTLVERSDGVTKYTAYNIHINGWYHGSVR FSHLYEFAELIKQKFSQRYKGPEFPAKKLFKLDPKAIDERRQKIAKYFQAMVQHPEIA RHYIIEKKLLGFQIDSFRATSQYVSLDIYLGNGEKTTIKCLVSDSTMEIMRILAEKLG FHNKDEFIYHFGLFMGKGRDPTVACYSVTPDNFNPLLTRFLRNFESPFVSLSTANQKY NENGHYNFLCIRKLIWDTRIEESILDDGVFVDMIYRQAVQDYKNGNLAPIKDDLEYKM KQCMQRNDKIMFLRNCHLLPTYSYEILSPCSCDYPKPGTPCEIKFGRRQVVLTTQDEF GNPKTSLFRATRIRVWRITQIMEKISFQFEYLMAKDTFEWITLDTDQAILMSLLLQSI GSEILYEHNNMTIEQQVMKEKQSKGNYVEKTSKLPRDPKKPIIVLKNAVEETDPLGVM EHYHNYNRMLTTISDGIPQRNQAFTDITNDDL" tRNA complement(89469..89539) /gene="CBG28476" /locus_tag="CBG_28476" /standard_name="CBG28476" /product="RNA transcript CBG28476" /note="C. briggsae predicted tRNA" CDS complement(join(93714..93777,93861..94144)) /gene="CBG05237" /locus_tag="CBG_05237" /standard_name="CBG05237" /product="Protein CBG05237" /note="Predicted" /db_xref="GOA:A8WZG2" /db_xref="UniProtKB/TrEMBL:A8WZG2" /protein_id="CAP25772.1" /translation="MADAALNSTTATSVMKVSTTFNMDQINRINGFFDSTAGAIFFTF IWVSFVVGMIAFSVWIICKNERDANNNGMDHDYESNGVMLRNAPVGPVVEIELPTINT NESDADGKYHRMF" CDS join(97230..97317,97366..97486,97534..97615,98486..98853, 98902..99054,99111..99393,99441..99539,99593..99761, 99835..99923) /gene="CBG05238" /locus_tag="CBG_05238" /standard_name="CBG05238" /product="Protein CBG05238" /note="contains similarity to Pfam domains PF07690 (Major Facilitator Superfamily) , PF00083 (Sugar (and other) transporter) contains similarity to Interpro domains IPR011701 (Major facilitator superfamily), IPR005828 (General substrate transporter)" /note="Predicted" /db_xref="GOA:A8WZG3" /db_xref="InterPro:IPR011701" /db_xref="InterPro:IPR020846" /db_xref="InterPro:IPR036259" /db_xref="UniProtKB/TrEMBL:A8WZG3" /protein_id="CAP25773.1" /translation="MVNETRDYISIVILFCVNLVNNIDRFTIAGVLPEVQSYYDINDS MGGMIQTVFLISFMIASPICGYLGDRFNRKYIMMVGMVIWLICVCGSTFIPGNLFPLF LVLRSLVGIGEASYVNICPTMISDMFTTDKRTRVYMLFYLAVPVGSGLGYIISSNVAS LTGYWQWGVRVTGIGGVIALLALLFLVYEPERGAADKVEGKESVRRTTSYMKDLRILL RCPTYVVTTMGYTCLIFVSGTLTWWMPTIIEYSAAWTRGYASIKQLPSSFKNQTGIIF GLLTTAGGIIGVLLGNIIAQCFLYGWLGQWSKTKRGHLIAAGLGAMIATPCLLALFTL GHKSEILTWVLVGISCTGLCFNWSLNVEVFNQVVAPERRSTAFSYVTLVSHLFGDASG PYIIGAISDSIKSGHVDSPEWDYKSLAYASLLAPFMMAASTLLYLLAAILFKRDAANL ERQMTSHIRNDDKKAAYSLDIWSDDCLDNTSKF" CDS join(101371..101679,102077..102161,102449..102561, 102618..102698,103147..103257,103307..103499, 103551..103694,103751..103970,104019..104096, 104148..104491,104527..104759,104809..105074, 105123..105297,105949..106227) /gene="CBG05239" /locus_tag="CBG_05239" /standard_name="CBG05239" /product="Protein CBG05239" /note="contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR008266 (Tyrosine-protein kinase, active site), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WZG4" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR008266" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR020635" /db_xref="UniProtKB/TrEMBL:A8WZG4" /protein_id="CAP25774.2" /translation="MHQPKETLLIDSPNPPYSHFIKYRFDNPTREQSPSTSLFADRKR VMKILGGFSIILIVTFLVAGSHGQVSSLLKMFSWKLFQYQITGSPTQPNMFTINPTTS PIGKGCTLNPDATPKNLKQYTGDISDACLAGVSSKSCVTWRMTNIVLLKDPQKVDENC DSIKQFVSSTTNSCDLKSSVQYVYPGQDNSCSPLLPFTSSALKRATYNSSKALVSSAY INEPGQQMFILLSDVSNCVTRNPIITDAGILNIFTDLSYIDLCEDGFFMQDFPKVLNK LIDAQYIVKFFFLNQNLKDSQSLVENVLAGCKYLNPKWWCEIVDMNLEKDDTKEFQIC LAEKEKSDFDWQLLLIIGIPCVSLTICCIAFFVCCLKCAKLKMAMMRMNVFSNEHNAG TMELRKKWLGKRKGIMKDMEMGSCKELNKPPGWSHFASANNYMDIQALANANKKDIWE IDTKNLLVQEDHLLGNGAFANVFKGIVKGKIPLLVVNNSLNMIVESENNGGHFEAAVK KLPAHADEQNHLDFFHEIDFMKRLGHHPHVISMLGCVSNPYEPLIVVEYCSRLCAHGI FFFSIVAWPNYDFQNKTDDCPIEADMCLRIKDLVSIAWQVADGMAYLTSKNFIHRDLA ARNILLTKSLTAKISDFGLCRYMDSALYTAKGGRLPIKWMSVEALKLYEFSSKSDVWS FGVLLFEIFSMGDVPYPTVQQVDMLEHLLAGGRLSQPIKCPNEIFSVMQKCFAEDPDH RPEFNEIRGEITVMLNLDDESYGYLSVQSEGGPKYTSLTMQDSKFQVLIFKYFYSISG NCTMSSQGNSQELDEDGDYDSGSETHSQSPCAKLDQVLTERFGEQQSQEIKQIFCEIT SKSIKNKISRQSGTSSSHRS" CDS join(119885..119938,121684..121860,121908..122019, 122067..122257,122312..122400,122446..122566, 122610..122711) /gene="CBG05243" /locus_tag="CBG_05243" /standard_name="CBG05243" /product="Protein CBG05243" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZG5" /protein_id="CAP25775.2" /translation="MPVNLQDRYDRELQKCYCARASCNFGCEIAEFCDNLIDGIQKQA PLKELESLFIEQDTLSGVLRSANGDWCDMFQDNAKEMDNHMMFIKSSLFRTIVVMQFL YNCTMGIYKSCRNRVIHHFDLDPYGRITAENGDYVHQIITDPRFNFARLFRSSIRILE HEIKRMDFTKQCVHEIMHILDLQLPEVELSDQNLANKVNNEGRKDLEKTSKQHKFMLN TYRVWHNKNRNYLKTAEKMMSSHLYKLIRMRDMHVLALDNWNDFSVIPDPFHPRNFEN LFIKV" CDS complement(join(123963..124130,124732..124952, 125043..125328,126046..126214,141749..141926, 142480..142531)) /gene="CBG05247" /locus_tag="CBG_05247" /standard_name="CBG05247" /product="Protein CBG05247" /note="contains similarity to Pfam domain PF03637 Mob1/phocein family contains similarity to Interpro domain IPR005301 (Mob1/phocein)" /note="Predicted" /db_xref="InterPro:IPR005301" /db_xref="InterPro:IPR036703" /db_xref="UniProtKB/TrEMBL:A8WZG7" /protein_id="CAP25777.2" /translation="MGHPTEKATNISAEDFSSSDPITPSGPHHQQSASEPGRVSSSTS SAQTPSHSHHHNQKGILNRLPDYFRDTVDWFIGRSRRSKERTATTATTGTAVANAAER MSKRVASASLAIRPQTKSSDLMCVCDSIDGNTITKFTNLPFGIEKREWIAHNVLGLFE HVNALCGTLTEVCTLQSCPHMSFPGTSKAIYQDERGKRQVYPAMQYIDCVITQCETMS RQEEIFPTKYGNKFNDNFEPAVKKMLAHLFHCMGHMYQNHWDVLGALQLRPQCAMVFA HIAEIGRIFNLLDTKEQDIVEDLVIELRPILPVLTQTLSLDHGDLPHDADRAIRVPSS KSGSWGGYPSPAVLSCKAYAQTC" CDS complement(join(150608..150805,150852..150929)) /gene="Cbr-nlp-3" /locus_tag="CBG_05250" /standard_name="CBG05250" /product="Protein CBR-NLP-3" /note="C. briggsae CBR-NLP-3 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZG8" /protein_id="CAP25778.2" /translation="MMSKNVACLVFLVLAVCYVHSAPHDFRAKRAINPFLDSMGKRAV NPFLDSIGKRSFHPDVISEEKRYFDSLAGQSLGKRSNNRYEMSDNYF" CDS complement(join(154913..154990,156013..156217, 156297..156377,156431..156520,156567..156623, 156691..157183,157232..157305,158115..158760, 158812..158911,159302..159615,163284..163326)) /gene="Cbr-cwp-5" /locus_tag="CBG_05251" /standard_name="CBG05251" /product="Protein CBR-CWP-5" /note="C. briggsae CBR-CWP-5 protein ;" /note="Predicted" /db_xref="GOA:A8WZG9" /db_xref="UniProtKB/TrEMBL:A8WZG9" /protein_id="CAP25779.2" /translation="MRISMLLLFLLAFRAAGATCPCDGITIAGSDQDHCWQIQARTGS TWGEADDSCVAVGGHLGHPSADNYASIIAFGQKESSLPVLTGIVAGNMEIPVVGALCQ DNGYYGVIANTTGLIKNTPTTSTTCTYIKSSSDALVFDSCSIDANILCDRPLEKNDYC SIMANCSSTTTMFSSTTSLSSTTGLTSTTSLFSSTTGSSTATGLTTPTEITTAAVTSN ISTTSTATQPPVASSSPATGGTSPITTPQTGGSTAVTGTTVTTKGLGGSGGGSGSGTV TTLATNPTTCQCPNNNNGVATTPATTTKPSEGSCSQPSGCLKYQWKIFGMCVDWRAML ALIGIMFGIFLFCCLCHCCMHACMYCSPRKKDQVKKVDYDVEKSDAVILPPPAIQPEP VYITVPEKHESVYGFHTKEIIHVLPEKPATKDVATMTDQIDELPAFLPVPVNAPVMKR KKAVKKPKKMFIPATADPIEEDVAAEIPIDIPDSPGARSVAPLGDVPEPVPMVPLNFS CNPKPIVPEPKPQDGIPPMPRTNQNSPGAPAHQRKPQSDNEEFDPSGLRSPPIPPAGK SNANAPRRMTFSPIADESEEETGARIPSPPREPRASSGGRKGNGENNGSGGLRSNSNS ENRPTLKNQRLNEMSSPTPAANAPAKSPVPSSGGASNNPFANIGGGGNSPAFGGEGGS GPHPGDDVGMRAARGKLGGAVRGGGGGGEAPSGWKPWAKGGARR" CDS join(165500..165553,165602..165738,165823..165961, 166009..166176,166224..166351,166401..166530, 166869..167022,167494..167615,167661..167726) /gene="Cbr-gpa-6" /locus_tag="CBG_05252" /standard_name="CBG05252" /product="Protein CBR-GPA-6" /note="C. briggsae CBR-GPA-6 protein; contains similarity to Pfam domains PF04670 (Gtr1/RagA G protein conserved region) , PF00025 (ADP-ribosylation factor family) , PF00503 (G-protein alpha subunit) contains similarity to Interpro domains IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR006762 (Gtr1/RagA G protein)" /note="Predicted" /db_xref="GOA:Q4VT31" /db_xref="InterPro:IPR001019" /db_xref="InterPro:IPR011025" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/Swiss-Prot:Q4VT31" /protein_id="CAP25780.3" /translation="MGAGAGGLSLRGARLSPEERANSSKSRAIDRALSKDHTDDLNRF KILLLGTAESGKSTIFRQMRVLHLDGYAKEDALEYLSIIHSNCMEALTQLVEACSAFG ILHDITVQEDVDRFEGFKKKLRDPEGLVIPVVIGRCMDRVWQSSSMQMCYETRRFRFA LLDSAKFMDNIVRLTEDNYVPTIQDIVHCRISTTGINEIAFNHKKMDFKMVDVGGQRS ERRKWIHCFDNVDMILFIVSMSDYDQLDPEDHKYNRMKQSYEIFKTIVHCDLFRHASI VLFLNKYDVFVEKLKTSPLRRSFKSYDGDNSEESARDFIKKLFRRCITDRHKFFVFET TATDTGNIDLVFGSAVAHIVNENLRSAGLHE" CDS join(187523..187634,188738..188773,188825..188975, 189019..189110,189475..189663,189965..190092, 190368..190786,190928..191027,192258..192380) /gene="Cbr-unc-9" /locus_tag="CBG_05256" /standard_name="CBG05256" /product="Protein CBR-UNC-9" /note="C. briggsae CBR-UNC-9 protein; contains similarity to Pfam domain PF00876 Innexin contains similarity to Interpro domain IPR000990 (Innexin)" /note="Predicted" /db_xref="GOA:A8WZH1" /db_xref="InterPro:IPR000990" /db_xref="UniProtKB/TrEMBL:A8WZH1" /protein_id="CAP25781.2" /translation="MSMLLYYFASAVKSIQFHVDDDIIDKLNYYYTTAIITVFAILVS AKQYVGFPIQCWVPATFTEPMEQYTENYCWVQNTYFLPLHDYIPHNYAERENRQIGYY QWVPFVLALEALLFYVPTIVWRLLSWQSEKRKLLFSREIETEKIRSFKENGAKKENAS RTARRTTKISRKECAGPPVFQLLRFFFFSDILCRIHVQSLVQMACDSRLLDLESRNRA LQTIATNVEEALHVKHQVMSGNRLKLLNLIICTRSSGAAVTFLYISVKILYTVNIVGQ IFLLNTFLGNRSKWYGLQVLNDLMNGREWEESGHFPRVTLCDFEVKVLGNVHRHTVQC VLMINMFNEKIFLFLWFWYFLLAGATLCSLFYWIYISVVPSRQLNFVGKYLTGIEGYK MVDSQSLRRFVFHFLRQDGVFLLRMVATHAGELPCYELAKTLWNNYCDNKEGKMHDV" assembly_gap 191279..191506 /estimated_length=228 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(193517..193678,193721..193794,194292..194394, 194440..194528,194576..194713,194762..194996, 195045..195131,195177..195425,195466..195570) /gene="CBG05257" /locus_tag="CBG_05257" /standard_name="CBG05257" /product="Protein CBG05257" /note="Predicted" /db_xref="GOA:A8WZH2" /db_xref="UniProtKB/TrEMBL:A8WZH2" /protein_id="CAP25782.2" /translation="MSNNSTNSTNTNSTDTNTTTTTTTTTLAPENTTEYLLQRCYESV LSDGQNDIVKYLMYFCGGWIIAWCIITMLVNICHKNTGHQRYVHFYEELSIILLAVCM CILNFIFNHKSKVCKFVAIFNHFFMCLTAAIFFAEALFASSMVHGKSDKNGSVPWILY YLFPIVLAVAPTLATFFTEEKYYGTAYLHCFADSTVDMFWGFVIPVWILLTIAGLKAQ LACIACDRQQPSQDIYQCYWARRSVKSLVLISQYLFSIWLMILFAAEHQKLYVFILVT CMALLFGPALFVCHTYCHLNTCKKWAGNGCFASLYAMCPPKPSPPEKDEDEEEQKHKD AIPEKTPIDEPDPKNNNEPGSRNQSDSDDPHQYTPTKSGSPVPKQGPNKHTESQKFYS WLTDTNASGKSGDILFRPSVA" CDS complement(join(195697..195850,195899..196442, 196490..196732,196863..197176,198294..198379)) /gene="Cbr-asp-4" /locus_tag="CBG_05258" /standard_name="CBG05258" /product="Protein CBR-ASP-4" /note="C. briggsae CBR-ASP-4 protein; contains similarity to Pfam domains PF00026 (Eukaryotic aspartyl protease) , PF07966 (A1 Propeptide) contains similarity to Interpro domains IPR001969 (Peptidase aspartic, active site), IPR012848 (Propeptide, peptidase A1), IPR001461 (Peptidase A1)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WZH3" /db_xref="InterPro:IPR001461" /db_xref="InterPro:IPR001969" /db_xref="InterPro:IPR021109" /db_xref="InterPro:IPR033121" /db_xref="UniProtKB/TrEMBL:A8WZH3" /protein_id="CAP25783.3" /translation="MNRCIILLLGALLLVQGLHIHKKQPKLRTISLKKQPTLRETLLQ AGTFETFARHRHGYQKKFLKHHGNHHFDKYNGVKPLGEIDELLRNYMDAQYFGTISIG TPGQNFTVIFDTGSSNLWVPSKKCPFYDIACMLHHRYDSKSSSTYKEDGRKMAIQYGT GSMKGFISKDSVCVAGICAEDQPFAEATSEPGITFVAAKFDGILGMAYPEIAVLGVQP VFNTLFEQKKVPSNVFSFWLNRNPDSELGGEITFGGIDARRYVEPITYTPVTRKGYWQ FKMDKVVGSGVLGCSNGCQAIADTGTSLIAGPKAQIEAIQNFIGAEPLIKGEYMISCD KVPTLPPVSFVIGGQEFSLKGEDYVLKVSQGGKTICLSGFMGIDLPERVGELWILGDV FIGRYYTVFDFDQNRVGFAQAKTADGHPVDPAPRKYRSVFDDEESEESSEQDDQ" CDS complement(200534..201031) /gene="Cbr-skr-20" /locus_tag="CBG_05259" /standard_name="CBG05259" /product="Protein CBR-SKR-20" /note="C. briggsae CBR-SKR-20 protein; contains similarity to Pfam domains PF01466 (Skp1 family, dimerisation domain) , PF03931 (Skp1 family, tetramerisation domain) contains similarity to Interpro domains IPR001232 (SKP1 component), IPR016072 (SKP1 component, dimerisation), IPR016897 (E3 ubiquitin ligase, SCF complex, Skp subunit), IPR016073 (SKP1 component, POZ)" /note="Predicted" /db_xref="GOA:A8WZH4" /db_xref="InterPro:IPR001232" /db_xref="InterPro:IPR011333" /db_xref="InterPro:IPR016072" /db_xref="InterPro:IPR016073" /db_xref="InterPro:IPR016897" /db_xref="InterPro:IPR036296" /db_xref="UniProtKB/TrEMBL:A8WZH4" /protein_id="CAP25784.1" /translation="MPTALYKLKSEDGQIFEVERAPMIVSSFINQKFIDQGANDRNCD RMEPILLPFNGSIISMIIKWLYHHQNEAPMSKKLRYCEFQDWDKEFFKMESGVLFALL NAAHALGIEDLMNMGCSAAAELIRGKNTEEIRKIYGIRTDEEQMEDALAAGGEGTSTT TFTVD" CDS complement(201696..202184) /gene="Cbr-skr-19" /locus_tag="CBG_05260" /standard_name="CBG05260" /product="Protein CBR-SKR-19" /note="C. briggsae CBR-SKR-19 protein; contains similarity to Pfam domains PF01466 (Skp1 family, dimerisation domain) , PF03931 (Skp1 family, tetramerisation domain) contains similarity to Interpro domains IPR001232 (SKP1 component), IPR016072 (SKP1 component, dimerisation), IPR016897 (E3 ubiquitin ligase, SCF complex, Skp subunit), IPR016073 (SKP1 component, POZ)" /note="Predicted" /db_xref="GOA:A8WZH5" /db_xref="InterPro:IPR001232" /db_xref="InterPro:IPR011333" /db_xref="InterPro:IPR016897" /db_xref="InterPro:IPR036296" /db_xref="UniProtKB/TrEMBL:A8WZH5" /protein_id="CAP25785.1" /translation="MIQIQEPVVLYKIRSIDRQRFLIDRPTVAMIGRLDEFFMNAGLD LIPADDLNAVQLEVSAPVLRKVIEWCDHHKFDPPHDEARAGTGDMSEWDTNFFMVRHS VLFEIIRAARDYDIPGLFAMCCQIVGQNPEVVMAGLLDDDDDDAVGGVFRMRVQQNAP AA" CDS complement(203591..204091) /gene="Cbr-skr-21" /locus_tag="CBG_05261" /standard_name="CBG05261" /product="Protein CBR-SKR-21" /note="C. briggsae CBR-SKR-21 protein; contains similarity to Pfam domains PF01466 (Skp1 family, dimerisation domain) , PF03931 (Skp1 family, tetramerisation domain) contains similarity to Interpro domains IPR001232 (SKP1 component), IPR016072 (SKP1 component, dimerisation), IPR016897 (E3 ubiquitin ligase, SCF complex, Skp subunit), IPR016073 (SKP1 component, POZ)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WZH6" /db_xref="InterPro:IPR001232" /db_xref="InterPro:IPR011333" /db_xref="InterPro:IPR016072" /db_xref="InterPro:IPR016073" /db_xref="InterPro:IPR016897" /db_xref="InterPro:IPR036296" /db_xref="UniProtKB/TrEMBL:A8WZH6" /protein_id="CAP25786.1" /translation="MAVGQLRKPAFKIRSCDGDIFIAQDWLIQKSKCFSVVYPYMKDS AQPLQTTVSSFIFEKIVQWCYHHRNNDDSTLFQRTVPEWDAQFLQSNNAIVLHLIEAA YRLEIKGLLNIACRAVSTMLGKSLTEVKVMLRVAEPEEILELEIRADNEAADVEAEMI PAISAA" CDS complement(join(205721..205799,206726..206862, 206909..207002,207051..207167,207215..207286, 207332..207536,207584..207686,208949..209141, 209188..209240)) /gene="CBG05262" /locus_tag="CBG_05262" /standard_name="CBG05262" /product="Protein CBG05262" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZH7" /protein_id="CAP25787.1" /translation="MHNDEYCIRYNFLNATETFREEGLEPVTLAIHGTAEMMKMIEQK PSNWDGPISLGLFVDFHSRQALDYIANLHYCDAEFRRKVTVHFAFRFSAFQDKCPLIK IASNTIECEEFLKNRDKYRKSVVGSFQLYPSNLMRNIARYGAKSDIHFIADVDMIMSE NFATKIKPIANEMIDGKNKKLLVVRRFETNTTTIPKNHKELGIAIKNKTVHEFHHKFF FSGHRIENISHWFNISDSSDKISAWEIPYTNSLWEVQVILHRNDLYNADYFPARIKVM QSLIYSLCRANYTFNLLSHVFDVHQGVKLDDTNYSKSVISHSQKFGKQIAYNRYVKEM NESYPLTLKRCGKFTM" CDS complement(join(211155..211262,211309..211704)) /gene="CBG28011" /locus_tag="CBG_28011" /standard_name="CBG28011" /product="Protein CBG28011" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG07" /protein_id="CAR98837.1" /translation="MSEEDRKLAERQRKSDEVAVEECYRQIQTTNDIDLSALFRRVFF ETTMSSALPPEIKNVVLEDAAGLNGGAGPSRGGQPNGDTSSNGEVGATERAHMSGIVR PNGAVSSVGKRENGKASELPASQAKESRATAVNNRKREFVPDGSSADGQRPKLASVAT QDDIYGN" CDS join(215618..215668,216657..216965,217501..218238, 218282..218377) /gene="CBG28012" /locus_tag="CBG_28012" /standard_name="CBG28012" /product="Protein CBG28012" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG08" /protein_id="CAR98838.1" /translation="MNKKLCFAEGDKVVRKAIDDVHLSFDKSEWKSFDEDKDINALVY KAVTTFENSAIDFSGNLDVDDMMNETWRARVFHSAFPKSIKTLEAFLDQWHKKYKSRH GTAPKESRAQLQKRIQKKFREWLEPSFHQTLDMLCTDFKKIGDDTLKTMAKRLEERAE FEAKAAEQKNATKQDSKPIADIAQEIVTAKIEEMKDDMNKRFKSLRLDPKEQQKAMLA EKRKEQEEKVAEKVMNAEIDRRARLGGRKRRAIKKRVKDPTAKHLLKRIQFEEVTLED LMDISKEVEQDLKIENEKAKKQKSEEQKEKPIETEKLEVESADSLYQKMTEVLDKDEE SDDDNNPIRINTEFWAERWSFNLQRSRENMMQRMQKNQQRDDLVDTYNTTLTKKTLKQ LLNRK" CDS join(220663..220962,221010..221393,221777..221873, 222610..222887,222942..223271,224236..224469, 225145..225432,225499..225972,226028..227605, 229195..229956,230005..230670,230987..231271, 231335..231619,231683..231790) /gene="CBG05265" /locus_tag="CBG_05265" /standard_name="CBG05265" /product="Protein CBG05265" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZH8" /protein_id="CAP25788.1" /translation="MNMDQKTNCPVDEFNAVFDEFTELALLSFRSVALFSIPKKHITM NWNKRLEYLNEETAKSKNDGMKEMEYTLDTLFKGYLSDPNMPSASISEWREKAGQKCN AQAEKEHEQFWDRKIKKEKEAWTVEVETSKLEDLKNMVNNSPETLGISLEDQKNIQTK IEEQSAERQKAAKTETKQDVENQLQMARDILKQTSDLLSITGLKCTGHSKKDDEQSIN TLLEAMNNDMFNGTNVHEIAALLSSSEATQLTKNVVQPGKISKMNQQQAEEKLKKLHD GIIGEALCVFRSTVFFQRIQEAPTPNEDARHVPGDYFERVFKTGKKAMNEFIANRYTT KNASQAALYQQYSYVVKKYCEMKSDDYFEEYCLHEEAHMKEILYLERLNKLDEKEACE ENRLELIMKKMPVEEECKALRERRQYLETLAQFRETKIREYEESKDPTKASPSVSTQQ KYSPELEAMIQKMMEDITANSKIPADHEEVYPPVYDAKTHIIIPTGGLASCQCSKNCE VKLMVPAYYALTRQETIDRGLVEEPTTKAKGKRESAMPKPSKNHLSDVQFYTRFDVHA YGLNVFRAELFFLIDILKFTSQTVEEHDLICDKACARAIRRMEYAIDSGFEEVEDKHA DRLDAVKHLVYVQCFTVGHNFYKLLANHTRETLGEDMKPYLFCKQFSLPCEGNEKIKN RENRQEVLSEVFQTSTRGMIERFEKNRMYEDCVLADVHASAIDEFLVKLEDDMEEDME REMNSVQLEAYCCYNYHEAYNSMIEEIDRMFAELKADSAETRHWVLSSKEMVIKRCRV EATEFFNRYHDYWNDLLAAEKENREIDTFDIDPRLKIMLRESRKRINKSKTERAGLEL AENLKRNFNCENPKDFWNTSSQKKFNNLAYLPEVEGTIAKEVQNQYGKHVQEKMYAVS SDVQNLNVEAPKKKNEQSRKEVKASVQSSLQGSSTQSTSGPQRIAEEVQIQYENQVQG KMNAVSSDVQNLNVEAPKKKNEQSRKEVKASVQSSLQGSSTQSTSGPQRIAEEVQNQY ENQVQGKMNAVSSDVQNLNVEAPKKKNEQSRKEVKASVQSSLQGSSTQSTSGPQRIAE EVQNQYENQVQGKMNAVSSDVQNLNVEAPKKKNEQSRKEVKASVQSSLQGSSTQSTSG PQRIAEEVQIQYENQVQGKMNAVSSDVQNLNVEAPKKKNEQSRKEVKASVQSSLQGSS TQSTSGPQRIAEEVQNQYENQVQGKMNAVSSDVQNLNVEAPKKKNEQFRDEVKAPVQS SQQGSSTQNTSRAERAQRLKTSRLQRAQRSRNYTYLQNLQRQRTEENAAAQSARTSNQ NKSAMSKPPKIASSDSTLGSNSTLEFYTRFDVHAHGLNVFQSEAFLLIDRLTCKAQTV EEHDFVRKHLLEQDKGTSTFFPIVLKFQENQFCLMSLFQCFEEGRKFFDMYAEHTREA LDEEMKHLIFCRQHLKPYEETEKTRNRWKRQDKIFEIQGKSANGMLERLKKDRMYEDC VLADVHASAIDEFRVKLDDNMNEAINKSVDSRQFMKLCETLYIEAYECMKKEIDYMFA AITFENAEARHRVWSFKDMVIKRCCVESHVFYDRYIDYWVDMCCAKKEGCEINDLDVD LRLMTMLGESKERVGKRNAERQAKLDFAEKLKRNFNCEDPKSFWKTSAQKELDQKSPA AVPPIMKKLNNLAHRPEVEGTIAEEVRNQYENHVREKMNAACSDAQNLNDGAPKKKNE RTRKEDKTQVQSTQQGSSTQSTSRAERAQRLKTLRLRKEEKIRNYTSMQNLQRQRAEE NAAAQSARTSNQSAQPSIENRESVRPPNLRGCSDVEELNVGASKTKKEESQKEVEAPV QSSQQGSGSQGSSRAQRARRPKSYLYLLELRSRRAEADDVARFACVSNQSAQPSIQNR ESVRPPNLRGCSDVEKLNVGASKTKKEESQKEVKAPVQSSQQGSGSQGSSRAQRARRP KSYLYLLELRSRRAEADDVARFACVSNQSAQPSIQNQQSVRTSSHPKNETNILTKMMD KCSVSK" assembly_gap 224803..224943 /estimated_length=141 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(233324..233413,233465..233974,234027..234239) /gene="CBG28013" /locus_tag="CBG_28013" /standard_name="CBG28013" /product="Protein CBG28013" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG09" /protein_id="CAR98839.1" /translation="MATKIEAVMSEAEYGSVTKYNKARQAVEKRCLKDCMNFYDEYSN LIKQTLYITQQLLSKNRTDGEKRHLERELEWRKPVNDRLVQEVVDGAYRLSEIAEKEK AEKETREKTGSNDKNASYTAIQNEIPKDKSLEMEFSKNQDDEKGRSKNHKTPKKLEAA ARRPFRLKQYYYMQELQRKRAEESKSATSSQASESNMNEKSDDTAEKQGSAKASSSGE NQLAVIAGEFESVSSPRLMIPSVLKPRRNDNFDTLDAENYSLSVKQAISKLI" CDS join(234826..234933,235485..235574,235628..235717, 235765..235991,236037..236172) /gene="CBG05267" /locus_tag="CBG_05267" /standard_name="CBG05267" /product="Protein CBG05267" /note="contains similarity to Pfam domain PF00385 Chromo (CHRromatin Organisation MOdifier) domain contains similarity to Interpro domains IPR000953 (Chromo domain/shadow), IPR023780 (Chromo domain), IPR023779 (Chromo domain, conserved site)" /note="Predicted" /db_xref="GOA:A8WZH9" /db_xref="InterPro:IPR000953" /db_xref="InterPro:IPR016197" /db_xref="InterPro:IPR023779" /db_xref="InterPro:IPR023780" /db_xref="UniProtKB/TrEMBL:A8WZH9" /protein_id="CAP25789.1" /translation="MAEEGVRKNPARASRVAPVRYEDTQESSSRRPANRNQSYNDGSY TVERILARRKIGKRLEYMVKWKNFAEHQSTWEPADNLNCPRLVAAFERNRESGYAKGV PEPPAKKSKLPKSNCRLSPISSEDEEEKAKPRKMMKKVHGLTTASGKLQYLCCFVDNT FALVSRRDMHNHYSRQLERYYKDKAKEEEMQIPLPEREEVKEQKMISVPPLLQDDL" CDS complement(join(237961..238049,238335..238401, 238447..238590,238635..238694)) /gene="CBG05269" /locus_tag="CBG_05269" /standard_name="CBG05269" /product="Protein CBG05269" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZI0" /protein_id="CAP25790.1" /translation="MGVISDVDLLGYYIQYGIRHPDHSMLLSLEREECSAKWNWWSRL ENKTITAGVGNATEPCDVVQGAFVGYSLIRLNPGNFTATGVLCQCRSNQAVQKQGAIE TGFFLTLFVILVEIMAR" CDS join(242062..242113,242249..242395,243466..243617, 243667..243741,243817..244083,244133..244216, 244526..244617,244669..244828,244874..244981, 245610..245711) /gene="Cbr-nhr-32" /locus_tag="CBG_05270" /standard_name="CBG05270" /product="Protein CBR-NHR-32" /note="C. briggsae CBR-NHR-32 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)" /note="Predicted" /db_xref="GOA:A8WZI1" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR013088" /db_xref="InterPro:IPR035500" /db_xref="UniProtKB/TrEMBL:A8WZI1" /protein_id="CAP25791.2" /translation="MFTAETNPSQIEILSHTEQCVVCGDAADGFHYGVRSCRGCNAFF RRAVTFNMSFTCRRGGRCPVDKNARCACRACRLAKCYAVGMDKKAVQPKREVVTSNGS FDQNDQDYERLGGTTTSPNYDLSDMTSPGSAFTPLAINLGDFIPAIPASPPSDASVIV RQVYDFAEQKRRRRAMLCGSLEEILSEQEMTLKQPATSEDFSRIFQAQMVLMFEWVEK LPEFRMLCDHNDKTKLLRAFALKYMLLDNVYHTYELGYRDRLVLVNNNYIVPGSPVDL KGCDVVDEVSIKDMIWGQRMQNLINDLVGPIGQQNMMYGEIMTIRRVMFWNPGNVQLS EMAKALSAEACNVAMKELQQYLLSEGVDDIEARIQFLLLLVPAFSAHHKTMYEIVRLI PSFGKMSDWNSFMEDVLNGV" CDS join(246829..247146,247511..247963,248939..249202) /gene="CBG05271" /locus_tag="CBG_05271" /standard_name="CBG05271" /product="Protein CBG05271" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZI2" /protein_id="CAP25792.1" /translation="MLLHHLAIFTLFVTTTALIDCSEEDTCFGEPYDCDPETQCNSLF HFDTAGNLHLYLRNFTDSYGYAAFATQTHPDEIIEYFICLPHQGQRLRALAELGGIVL VTDQNLTGVVELLGENYFRCIFNVSELPKQFQNEQIFFVSKGTFDETLVIYDGEQLFN LDRFEDSDEDLEDNDVLPVAYQISSKIHHRSMEDVLSSDDKNTMSDAINNLPKSSSKS KDDVELEKIARSSRHIRVRHTRRNEDEDVEEDDNEEHHQRHHKLHRAHKQEESFDAEN SDIPKSKKGRRHHDEKSQPRHKHSKKSVIEEEEYDNQEYADDENADASNNINYSFACV IIAGLLRYRF" tRNA complement(join(249544..249580,249590..249627)) /gene="CBG28567" /locus_tag="CBG_28567" /standard_name="CBG28567" /product="RNA transcript CBG28567" /note="C. briggsae predicted tRNA" CDS complement(join(249872..250078,250124..250281, 250336..250595,250643..250767,251043..251509, 251559..251694,251747..251869)) /gene="Cbr-cyp-14A1" /locus_tag="CBG_05272" /standard_name="CBG05272" /product="Protein CBR-CYP-14A1" /note="C. briggsae CBR-CYP-14A1 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR017972 (Cytochrome P450, conserved site), IPR002401 (Cytochrome P450, E-class, group I), IPR002403 (Cytochrome P450, E-class, group IV)" /note="Predicted" /db_xref="GOA:A8WZI3" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR017972" /db_xref="InterPro:IPR036396" /db_xref="UniProtKB/TrEMBL:A8WZI3" /protein_id="CAP25793.1" /translation="MSVFILAVLVFLVLYVVHFYWKVSKYPKGPFPLPLIGNIHQFPP DHVQLYFDEMSKIYGPCFTVWIPYPAIVLNDYEHVKEAFVTQGDTFTYRAHRSPETLL PVHDHTGILASDGDHWRLQRRTSLKILRDFGLGRNLMEEQVVRSVQEMMVQIENITDK NKVDMFWPIQLCVGNVINETLFGFHYKYEDSEKFKTFVRIVDKHLRHLQGTMPLLVSA FPWLRHLPIIGDIGYHNIKNNISSYQTFIEEEVTTQVKQYDGVSEPENFVHAYMQQMK QTGNPGLDIKNLCASVLDFWLAGMETTSNSLRWHLAYMMKYPEIQDKVRKEIFEVVGT SRLPSMSDKPNMPYTQAVIHEVQRCSNMLPFLGSHQCVEETSIKGKHVPAGTLVFAQI WSVMKNDPVFKDASEFNPDRYLQSDGKTFDKAVLEKTIPFSIGKRNCVGEGLARMELF LIFSALIQKYEFVPTSNIDLSPDWGVVMTSKPYTCQLLPQY" CDS complement(join(252482..252601,252754..252911, 252959..253052)) /gene="CBG05273" /locus_tag="CBG_05273" /standard_name="CBG05273" /product="Protein CBG05273" /note="contains similarity to Interpro domain IPR002401 (Cytochrome P450, E-class, group I)" /note="Predicted" /db_xref="GOA:A8WZI4" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR036396" /db_xref="UniProtKB/TrEMBL:A8WZI4" /protein_id="CAP25794.2" /translation="MSDKPNMPYTQSVIHEVQRQSDMIPLLGTHKNNQDITVKGVNLS SGTVVYGQIWSIMNDDSVFEENHKFNPSRYLQADGKMLNKTYAFIPNSNIDLSPDWGA VLTSKPYTYQLIPQTLYYFVK" CDS complement(join(253286..253372,253392..253499)) /gene="CBG28014" /locus_tag="CBG_28014" /standard_name="CBG28014" /product="Protein CBG28014" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG10" /protein_id="CAR98840.1" /translation="MGAFPWLRQVPIIGELGYHKIERNVKQVSYFNTFVNYHKFIEEE VTSQMKEYDGESEPDNFVHA" CDS complement(256544..260140) /gene="CBG05275" /locus_tag="CBG_05275" /standard_name="CBG05275" /product="Protein CBG05275" /note="contains similarity to Pfam domain PF02945 Recombination endonuclease VII contains similarity to Interpro domain IPR004211 (Recombination endonuclease VII)" /note="Predicted" /db_xref="InterPro:IPR004211" /db_xref="InterPro:IPR012337" /db_xref="InterPro:IPR038563" /db_xref="UniProtKB/TrEMBL:A8WZI5" /protein_id="CAP25795.2" /translation="MEVEDYSKLTRDQLRAVLGSKKTMNKANIRAMKKEDILKELERL SDQQNQENQDAINRESNYQLRKLFPFDKTVFSEYKEVGDVLRDTIHTGNSNNIQSFLN KKESDVFKDIYKDSSVKIYFSLSCEMKKEGTEEARLDHLTTTSKALHKGENRKSFYET VKLDLINRLQQHQGRGSGFRLNRIIGLRMYQTRIRSLSGSKYIELPDWIKNKKAVINI KNKDDKCFMWCILAHLFPVERDPNRVSKYNDYVSKVNFDGFDFPFQVKDVDKFEKRNN LAINILVHNVEDDEKINSYKVSKKVNVDVDRVVNLLLVTDNSGEGHYCLIKNIDRLMN NKNGTRNKFCIRCHNNFYSEEKYENHLSDCMNNSPLQMIKPSKDYIEFDGIQKTQKQR YVCYADFESVIYKIDNVSRSPSESWNENFGKHVASAFCVVVVDSFTNTIYDMKSYIGY DTILKFNEYILEVCEKLLSIADRRMQKLTFEEVESFHSCESCPACGNKFCGDKVRDHD HWTGLYRGPLCNACNLLKRRNNFIPVFFHNLKGYDSHLIISDDKSSELLKERGVEIKS ISANIEKFISFSYHFHDKDRKKYEIRFLDSLGFMPSSLDYLSGNLEDDECIITKKYYN NEHLFHLMRRKGVYPYDFMDSFKKYSNTELPPIEDFYNSLSGETISNESYEYAQQVWK DMSCQTLEDYTRTYMINDVLLLADVFETFRNVSLKEYKLDPCWYYTSPGLAWDAMLYK TGVKLQTIKDVEMYNLIEKGIRGGMCNAMLRYSKANNKYMPNYNPEEESKYLLYLDAN NLYGWAMSQKLPYDEFEFINAADFCMEMIENLNSQGKGCILEVDLDYPDSLHDKHNDL PFCSENKRVGTTNKLINDFSPKRNYVIHYKNLLQAIQQGLVLKKIHRVVTFKESNWLA SYIELNTNLRKKAKNEFEKDFFKLMNNSVFGKTMENVRHRVDVKVVTDMDKVMKLAGS NNFKQRHIVNNNLILVEMTQKSIKLDKPIYVGMSILDLSKYLMYEFHYDVMLPKYSSN LRLCYQDTDSYIYEIKTDDVYEDMQSMKEHFDFSDYPTDNKLYSIENKKVIGKFKDEL NGKIMTEIVAFRPKQYAFKIDDGSEQKKNKGIKKSVVKKEMTFNDYKNCLENRTIERK QQTLISSSKHEISSVRQNKVVLNNIIGKDKETKRYFVDNINSLAFGHYRIKN" CDS 260192..261109 /gene="CBG28015" /locus_tag="CBG_28015" /standard_name="CBG28015" /product="Protein CBG28015" /note="Predicted" /db_xref="UniProtKB/TrEMBL:G2J6H5" /protein_id="CAR98841.1" /translation="MHSILEIYDPKKRNDIVQSYLKNRKEHKVKNLQERSDLEHIEDH RIDVFKPILESNKKLQEEIIDEKNKIVETLNNFKPLSQHSIGTPTIKQKSLIKQPSVH LPKEILPSSSSPLVVSSLIVSYLQDNSDRSNAGYSVKFDKDEKKYTIGNKDITFTQNM IKINNDEYTATEGLMELLTKKSPNLKKIDAEDTKNYQTILLCSNGLYQGFDKSSKRYN SDSSDKWAFIKANYFVAKTSTTTSGSSISFIPSNTNSLIDSLRLSIASFQAGNNGEYN KINAILDELVKQKKIKKKDLGVIYLNIGL" CDS complement(join(263149..263183,263421..263506, 264166..264170,264948..267174,267221..267294)) /gene="CBG05276" /locus_tag="CBG_05276" /standard_name="CBG05276" /product="Protein CBG05276" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZI6" /protein_id="CAP25796.2" /translation="MLINAQTFQYYNGDFLLDMVSRNIKIPKLHKCNYHRILNSQSEI VQYEVFKPNIIEYISEAKLCKKLVSEVSMYTDFSGYEHLVEKELNNYPITLAECREMI NSKKCGFGSLTKGSSNTWSTNNKIDVDYPNRFTSFFTPKRYYKENCIVIETKVYSHYN QTKPTNIMAEMKNCKYQDGFCEIKKNEIVTWDVNREQKCQYISIGILDGMYSNKLWVN NKNQIALNFQSDKTIQDCNSSLMISDEGFAVKRINRAASQYSPRQIPVSIPSHSQRQQ LEEDRRKREQEEQRKQQEDNRRREQEDSRKREEQSRRDQEDARRRDQERQKQNEADFE KRKQEKLKREEETEKKKQEKIRKAQDEAVRKLIQQRQEEDWTVHDEKPKDNRHPPKSN RTKREITDHRAIFQPLPLPDYNEYLKIKQDCDNLPSYEAFKNSRDGCDSLTSYTNFIN SIANYEKNQQHLNLSQTWRPLPFPGYEEYLSIKEDCNILPTYEEYKTIRDSCHAFPSY TDFIKRIAKYEMFETGKLRRKRELYSDFQAAGEFQYLENQSNNLIRHTTEVMCDIFNE QNEVLESLIRENPRRYIQKQLNHTAIKVKLIDSQEPVVQVTFCKEIDEEEIDFIDVTH FDGHKLSLALTLGQIPIKIKSLGDKVWYYKNDYSGGVISSKPQLHPMIDFRTNITNMR NFKEFDLKFLDDKVVFHEHILLDLKTNIEEELIEEMREKSDVSIQVHANNQDSTLPHE ILDDVEGFFGKWWLRIWRVGVTLGVAVNKWLQKFGKKNITFLLLIRLVTRTTESLERY CEHRIGHPDD" CDS complement(join(268580..269184,269233..269764, 270087..270191,270327..270515,270734..270937, 270985..271142,271187..271446,271492..271616, 271793..272130,272197..272332,272379..272501)) /gene="CBG05277" /locus_tag="CBG_05277" /standard_name="CBG05277" /product="Protein CBG05277" /note="contains similarity to Pfam domains PF00665 (Integrase core domain) , PF00067 (Cytochrome P450) (2)contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR017972 (Cytochrome P450, conserved site), IPR002401 (Cytochrome P450, E-class, group I), IPR000953 (Chromo domain/shadow), IPR001584 (Integrase, catalytic core), IPR002403 (Cytochrome P450, E-class, group IV)" /note="Predicted" /db_xref="GOA:A8WZI7" /db_xref="InterPro:IPR000953" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR001584" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR012337" /db_xref="InterPro:IPR016197" /db_xref="InterPro:IPR017972" /db_xref="InterPro:IPR023780" /db_xref="InterPro:IPR036396" /db_xref="InterPro:IPR036397" /db_xref="UniProtKB/TrEMBL:A8WZI7" /protein_id="CAP25797.1" /translation="MSVLIVAFLVFVITYIAHFYWKVSKYPKGPFPLPLIGNVLQFPD KNIHIYFDELAKTYGPCFTLWTPLPAVVITDYDYLKDAFVTQGEAFIMRAERPPETLL QPHINTGVLASSGENWRLQRRTSLKILRDFGLGRNLMEEQVMRSVHEMLHQIENITDK KKVDMFWPIQLCVGNVINESLFGYHYKYEDADRFKTFVQYQGFIEEEVASQIKEYDGE SEPDNFVHAYMQQMKQTGNPGLDMPNLCASVLDFWLAGMETTSNSLRWHLAYMMKYPE IQDNVRKEIFEVVGASRLPSMSDKPNMPYTQSVIHEVQRHSNMIPMLGSHTNTEDIIV KGQNVPTGTVIFAQVWSILKNDSVFDESHKFNPSRYLQADGKTLNKAVLERTIPFSIG KRNCVGEGLARMELFLIFSALIQKYEFVPNDNVDLTPVWGGVLTSKPYTCQLIPQAFP GQNIHIYFDDLSKTYGPCFTLWTPLPAVVITDYDYLKGAFVNQGKYYSFLFLKLLRNF LLTILRDFGLGRNLMEEQVMRSVHEMLYQIGNITDKKKILSINNKQLLRGKCVVCKTK KCKIIPNSKSGGTLKSIKPSTKETKKSEIKLDDAYYNPETGFCGINELQRKTKKPIEE VKRFLNEQDVYTLHKPARKNFKSERVYVHNIDEQWQSDLVEMIPYAEENNDFKYLLTV IDCFSKYAWVIPLKTKTGKETASALQTIFKHRKPQKMQTDNDIRHFSTYSDKKASIIE RFNRTLKEKMWKMFTYQGDHKWTKILDKLVSGYNNHFHRGIKMTPIEASKTENVQKVH DNLFPSKKLFEESPKSKFKIDDTVRITKYKAVFAKGYLPNWSTEMFKISEVHPGEVIS YSIRDLADEEIKGKFYEEELTFFNNVNDEHKIESILKRRTRKGQKELFVKWYGYPDKF NSWIPDTNLN" CDS complement(join(273473..273682,273730..273887, 273932..274094,274156..274183,274229..274859, 274927..275017)) /gene="CBG05278" /locus_tag="CBG_05278" /standard_name="CBG05278" /product="Protein CBG05278" /note="contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR017972 (Cytochrome P450, conserved site), IPR002401 (Cytochrome P450, E-class, group I), IPR002403 (Cytochrome P450, E-class, group IV)" /note="Predicted" /db_xref="GOA:A8WZI8" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR017972" /db_xref="InterPro:IPR036396" /db_xref="UniProtKB/TrEMBL:A8WZI8" /protein_id="CAP25798.1" /translation="MYGLCFTLWAPLPAIVITHYDYLKDAFVTQGDAFITRINRPPET LPQAHNNTGVLVSSRENWRLQRRTSLKILRDFGLSRNLMEEQVMRSVHEMLQQIENIN DKKKVDMFWPIRLCVGNVINESLFGYHYKYDDADRFKNFVQIADRHLRAALGKLQLLM TAFPWLRHVPIIRELGYHKIGTTPFCETLCAVFSIKDLSRKRLLIKSKSMMERVNQKI LSTPTKILSTPRQMKQTGNPGLDMPNLCSRFLYPEIQDKVREKIFEVVGTSRLPSMSD KPNMPYTQAVIHEVQRHSNMIPVMLFHTNTEDVVVKGQNVPTGTLVFGQIWSIMKNDS MFDESQKFNPSRYLQADGKTLNNAVIEKKIPFGIGKKACAGEGLARMELFLIFSAFIQ KYEFIANSNIDLSPDWGGVLTSKSYTCQLIPQTV" CDS complement(275079..275213) /gene="CBG28016" /locus_tag="CBG_28016" /standard_name="CBG28016" /product="Protein CBG28016" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG12" /protein_id="CAR98842.1" /translation="MSVLIIAFLVFIIAYIAHFYWKVSKYPKEPFPLPFIGNFLQVCE " CDS complement(join(276214..276420,276466..276623, 276674..276933,276991..277115,277161..277627, 278074..278209,278269..278391)) /gene="Cbr-cyp-14A4" /locus_tag="CBG_05279" /standard_name="CBG05279" /product="Protein CBR-CYP-14A4" /note="C. briggsae CBR-CYP-14A4 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR017972 (Cytochrome P450, conserved site), IPR002401 (Cytochrome P450, E-class, group I), IPR002403 (Cytochrome P450, E-class, group IV)" /note="Predicted" /db_xref="GOA:A8WZI9" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR017972" /db_xref="InterPro:IPR036396" /db_xref="UniProtKB/TrEMBL:A8WZI9" /protein_id="CAP25799.2" /translation="MSLLIISFVLITVVYIINFYWEVRKYPKGPFPLPLIGNIHQIPD DKLEVWFDDLSKTYGPIFTVWSPLPCVVITDYAHIKDAFVTQGETYTYRAHRPPESLL QPHDNTGILNSSGENWRLQRRTSLKILRDFGMGRNLMEEQIVKSIQEMMEQLAKSMDK KKAEIFWPIQLCVGNVINEFLFGFHYKYDECERFKKFVNVVDYHLRILLGKCSLSVSA FPWLRHVPIIGELGYHRIKRNIKTYQSFIEEEVEKQLEKFDTESEPENFVHAYLQQMK QTGHPGLDMKNLCACVLDFWLAGMETTSNALRWHIAYMMKHPVIQENVRKEILDVVGT SRLPSMSDKPKMPYTQAVIHEVQRHSNMVPFLGTHQSVQETEILGKKIPAGTNVIAQT WSVMKNDPIFVNHLEFNPSRYLLADGKTFDKVVLERTIPFSVGKRSCVGEGLARMELF LIFTALIQKYEFIANGPVDMSYNAGAVLTIKPYTCEMRKVF" tRNA complement(join(280155..280191,280201..280238)) /gene="CBG28803" /locus_tag="CBG_28803" /standard_name="CBG28803" /product="RNA transcript CBG28803" /note="C. briggsae predicted tRNA" CDS 280309..280407 /gene="CBG28017" /locus_tag="CBG_28017" /standard_name="CBG28017" /product="Protein CBG28017" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG13" /protein_id="CAR98843.1" /translation="MYQTHTHTCAWEAREKKVAAEGAHGLSGQRRV" assembly_gap 282349..282964 /estimated_length=616 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(284716..284770,285414..285536,286150..286439) /gene="CBG05281" /locus_tag="CBG_05281" /standard_name="CBG05281" /product="Protein CBG05281" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZJ0" /protein_id="CAP25800.2" /translation="MDIPNFDFEALMEKEDEMKELRPKSLKASLKQEGFFPDPSKKDR FAKMVDKIVDYFEDGNFKALMQFLFEKHKTLELWKTIDEKVEIHDWLDFFEESVIKSL RRMTNIPEEVDIEIGEIFVKLQVKTIRVAVSAFDVNAFAEKAAKMREPWHFHF" CDS complement(join(286801..287049,287095..287173, 287410..287615,287968..288105,288147..288443)) /gene="Cbr-srd-36" /locus_tag="CBG_05282" /standard_name="CBG05282" /product="Protein CBR-SRD-36" /note="C. briggsae CBR-SRD-36 protein; contains similarity to Pfam domains PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd) , PF10326 (Serpentine type 7TM GPCR chemoreceptor Str) contains similarity to Interpro domains IPR019421 (7TM GPCR, serpentine receptor class d (Srd)), IPR019428 (7TM GPCR, serpentine receptor class r (Str))" /note="Predicted" /db_xref="GOA:A8WZJ1" /db_xref="InterPro:IPR019421" /db_xref="UniProtKB/TrEMBL:A8WZJ1" /protein_id="CAP25801.1" /translation="MLAEEYKTILSIFYPIFFVITLIAQLFLMFLIIKHSPKSIHMLR IILGLTCIFQIILAFSAFFVQVRFVTTKKPIEMWSYGVCRHFEPWICYCFYQTEQMSA MASGLTIYGTFYLKYRMVKGVQLTKLEIIKTYAMFFCPFFLSLILVIIIIKTQTLSWE SEEQLHLLNYFLYANADYLAIASLSFSKWPNTLNLMIFTSCIIVIPIMCYYCRKKTLS QIYLQLENMSAPRQNLYKSFIMGLSVQCSLPYIFYVPIYTLYYYCLITGREVLFLEFH LTLVPALPAIIDPLVSVYFVTPFRRKIMRWIKREREVIRTTSAFTK" CDS complement(289663..289746) /gene="CBG28018" /locus_tag="CBG_28018" /standard_name="CBG28018" /product="Protein CBG28018" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG14" /protein_id="CAR98844.1" /translation="MPKFRFSKYRNFVTSEFQNKNFENSGI" CDS complement(join(289925..290112,290163..290241, 290306..290378,290428..290621,291550..291990)) /gene="Cbr-srd-39" /locus_tag="CBG_05283" /standard_name="CBG05283" /product="Protein CBR-SRD-39" /note="C. briggsae CBR-SRD-39 protein; contains similarity to Pfam domain PF10317 Serpentine type 7TM GPCR chemoreceptor Srd contains similarity to Interpro domain IPR019421 (7TM GPCR, serpentine receptor class d (Srd))" /note="Predicted" /db_xref="GOA:A8WZJ2" /db_xref="InterPro:IPR019421" /db_xref="UniProtKB/TrEMBL:A8WZJ2" /protein_id="CAP25802.1" /translation="MSSLEQDYRDFLDIYCPAFFFATLIMQFIVLYFIIFFAGKMSAP FRIMLAHTSICQLILLFITMSCQFRMISSHVPVEVRVYGPLRFVKAIYTYTLHQAWQF FMFMSGMTIIVTLFFKLMTVNAMFAKKWPMFIAFCIFHIPVVFSGGLEVYLVITAALP AEIQQALALRNIDVSLYSVTGTLRLQTVSLINFIIMVGAVFVYPIASFFIAARTLFLL NRHVLSKTGKAEHRSFIAGLCLQSLLPVLTYFPTFVLYVHCVLTGTEMLFQQYGIYLM PTTPALIDPFLTLTFMVPFRNRILTWVGLRKPRVVNSNNLMSVTRSFT" assembly_gap 300650..300659 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(305130..305302,305355..305433,305480..305558, 306752..306933) /gene="CBG05287" /locus_tag="CBG_05287" /standard_name="CBG05287" /product="Protein CBG05287" /note="contains similarity to Pfam domains PF10319 (Serpentine type 7TM GPCR chemoreceptor Srj) , PF10318 (Serpentine type 7TM GPCR chemoreceptor Srh) , PF10326 (Serpentine type 7TM GPCR chemoreceptor Str) contains similarity to Interpro domains IPR019423 (7TM GPCR, serpentine receptor class j (Srj)), IPR019422 (7TM GPCR, serpentine receptor class h (Srh)), IPR019428 (7TM GPCR, serpentine receptor class r (Str))" /note="Predicted" /db_xref="GOA:A8WZJ3" /db_xref="InterPro:IPR019421" /db_xref="UniProtKB/TrEMBL:A8WZJ3" /protein_id="CAP25803.2" /translation="MQSWPADIREHYYILNQNLTDYANVGFVDLSVLPSAINYVIINT LVLGIPITAEFLRRKVSSKITSTIDTISESKRSQTRTFLKGLTIQVVLPLFLYVPVFL CQLYTTIAKQEVLFQQYLIFELPVISTVLDPLISMYFITPYRRTIKKRFQREKQATTD AHIPSVFVVM" CDS complement(join(309365..309543,309591..309669, 309713..309794,309844..310040,310088..310510)) /gene="Cbr-srd-47" /locus_tag="CBG_05288" /standard_name="CBG05288" /product="Protein CBR-SRD-47" /note="C. briggsae CBR-SRD-47 protein; contains similarity to Pfam domains PF10318 (Serpentine type 7TM GPCR chemoreceptor Srh) , PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd) contains similarity to Interpro domains IPR019422 (7TM GPCR, serpentine receptor class h (Srh)), IPR019421 (7TM GPCR, serpentine receptor class d (Srd))" /note="Predicted" /db_xref="GOA:A8WZJ4" /db_xref="InterPro:IPR019421" /db_xref="UniProtKB/TrEMBL:A8WZJ4" /protein_id="CAP25804.2" /translation="MHREILSILFPTLFCIVLPSQVLLMYMIQYYSPKFLNNLKSILR CNCLLQFITLLIACSLQTRQVSNLTPIEIWCYGYVKDFDPTILYSLYFLSQSTTLASV LLTFLTIYLKFDVVRNMNKSSNQKYIVTFILLIPVVVVTGAEIFLIITKSLASEYQEK LLKINLKVTDHSVIGFITLQTIPSQAIFLCIIGPVFILPPIGFLIRRKFVNIVSATLE RTTSTNRKQQNQSFINGLTIQVFLPIVCYLPMFIYLFIVIETKTESLFEQYFIGIFST FPSLLDSYITSYSVKTYRKQIKILFKLEKAEQPIVVAAIVSQM" CDS complement(join(312788..312987,313042..313120, 313167..313245,313312..313508,313551..313688, 313729..314028)) /gene="Cbr-srd-41" /locus_tag="CBG_05289" /standard_name="CBG05289" /product="Protein CBR-SRD-41" /note="C. briggsae CBR-SRD-41 protein; contains similarity to Pfam domains PF10318 (Serpentine type 7TM GPCR chemoreceptor Srh) , PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd) , PF10326 (Serpentine type 7TM GPCR chemoreceptor Str) contains similarity to Interpro domains IPR019422 (7TM GPCR, serpentine receptor class h (Srh)), IPR019421 (7TM GPCR, serpentine receptor class d (Srd)), IPR019428 (7TM GPCR, serpentine receptor class r (Str))" /note="Predicted" /db_xref="GOA:A8WZJ5" /db_xref="InterPro:IPR019421" /db_xref="UniProtKB/TrEMBL:A8WZJ5" /protein_id="CAP25805.2" /translation="MPSSETYLTFLFFFYPILALASWASQCLTNFFILRHTPKFMEKL KYVMINTSVFQTAHVSVCWLMQFRQVSNADPIQIWSYGLGKYFPAHIGYMFYHIMQTC TFASGISVVISLFLKYQAVRLTPFDPKWRKFVLFLIILPLIISVTMEVVLIVDHSLPL EIREHYEQLNLSNEQYTIVGVIDFLIWPSTVNTSVMVLSVFMFPVVGLLSLWKMRKLF KRTSDRVSAIKNTQRRLFLIGLVIQTFLPLIFYCPISLVYFYCIRTKEEILLQQYFMF TLPACPALIDPYITLYFVKPYRDTIKNWFTIRLGTEKAVIVSPATKNSTLMIVE" CDS complement(join(315301..315476,315523..315601, 316021..316099,316144..316340,316385..316522, 317189..317485)) /gene="Cbr-srd-40" /locus_tag="CBG_05290" /standard_name="CBG05290" /product="Protein CBR-SRD-40" /note="C. briggsae CBR-SRD-40 protein; contains similarity to Pfam domains PF10318 (Serpentine type 7TM GPCR chemoreceptor Srh) , PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd) , PF10326 (Serpentine type 7TM GPCR chemoreceptor Str) contains similarity to Interpro domains IPR019422 (7TM GPCR, serpentine receptor class h (Srh)), IPR019421 (7TM GPCR, serpentine receptor class d (Srd)), IPR019428 (7TM GPCR, serpentine receptor class r (Str))" /note="Predicted" /db_xref="GOA:A8WZJ6" /db_xref="InterPro:IPR019421" /db_xref="UniProtKB/TrEMBL:A8WZJ6" /protein_id="CAP25806.1" /translation="MTTDVYREVLAIFYPAFFVSSLLIQAILVYFIIFHSPKSLETMK VFLVNTSVFHVILIFVSCASQFRMISTSVPIELRSYGPCKYFEAWMGYSLYQMLQTSA FMSGMSILVTFFFKYEVVRCIKLPRCRIIIIVIGFHIPIFVSLLMEIIMVVTQALPDD VREKYRLINSNVQEYSVIGSLSLKTLPSIINFALISGAVAFAPFISFFFRNKILTRIN SKLNHHSQQRKTLIRVFVKGLTIQAFLPLIFYVPIFGLYIYCILTHFEVLFQQYFMTV VPSLPALFDPLITLYFVTPYRRRLKIWMRIEKESKVMPVITSQIN" CDS complement(join(318090..318352,318930..319054, 319108..319880)) /gene="CBG05291" /locus_tag="CBG_05291" /standard_name="CBG05291" /product="Protein CBG05291" /note="contains similarity to Interpro domain IPR002160 (Proteinase inhibitor I3, Kunitz legume)" /note="Partially confirmed by transcript evidence" /db_xref="UniProtKB/TrEMBL:A8WZJ7" /protein_id="CAP25807.2" /translation="MLFQDESSYANPGIYRQSLEEIMYTPIRKVEKKQFHDETLSSAK RVTTLLQKFESGKLDLSIDTEEIKDVKHHEDDILDGPVYPILFTPTPKPRTIRRGLRP KEATEYHDDKLVTEKKKECPVIVETPILRTINRQFSGVSFIETPFKLSRINLEGSAKR QEPYESRQKTKSTEVEDHTLVTKQEKESPVLVETPILRTLNRQFSGASYIETRYKLSR SNLEKSTELLEQYGSRQTSKSTGSSSGSSEASSSDSNDNRNDVNTETASDSFNTANRF YFSKFARAQVHHKFEMYFKWDSETLRSCAVTVSKLRFEILQKIPQCEKDERVIRMMKI YKKCSEGVNKEMDTLCCALFDLLDDVNDKRLSIHEEYVVEKYNKKIASFGSR" CDS join(321260..321348,322452..322800,322846..323097, 323184..323360,323548..323619) /gene="CBG05292" /locus_tag="CBG_05292" /standard_name="CBG05292" /product="Protein CBG05292" /note="contains similarity to Pfam domains PF00046 (Homeobox domain) , PF03792 (PBC domain) , PF05920 (Homeobox KN domain) contains similarity to Interpro domains IPR008422 (Homeobox KN domain), IPR005542 (PBX), IPR017970 (Homeobox, conserved site), IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:A8WZJ8" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR005542" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="UniProtKB/TrEMBL:A8WZJ8" /protein_id="CAP25808.1" /translation="MGGPTNLAELLAEVTKITDMTLDENAMNSLKCQIRVNPLHRAMQ SVLIDNKEKVSISPRPALCPVNNQNEKMLDNMLTAEGIVVPGCDPSHVADIKREPDFN RELNSVQNDLNQEIGACHKRRAEFSETVSNVIRSQGEFRPITHKDIECMSNMVSHKFQ KVIECAKQRSCENVTHLKRVYMDARRTRKNFSRQSTEILNNYFQAHITHPYPTEQEKE ELARQCNISVGQVSNWFGNKRIRYKKMLSKEKSENERNAQRCAPQPMPCIPNPYMMQG YSMAPPFMLVPPNMPDYQQFVPKFEPPTTAGSSVSH" assembly_gap 324210..325237 /estimated_length=1028 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(325725..326449,328888..329038, 329081..329383,329908..329925)) /gene="CBG05293" /locus_tag="CBG_05293" /standard_name="CBG05293" /product="Protein CBG05293" /note="Predicted" /db_xref="GOA:A8WZJ9" /db_xref="InterPro:IPR029028" /db_xref="InterPro:IPR032848" /db_xref="UniProtKB/TrEMBL:A8WZJ9" /protein_id="CAP25809.2" /translation="MSDVNETISDIARPTDLHSANIIPFQPDEGIFKVPDLPPWRLKA KETKERRRILRISDPRRKRVRRRKVRHDEDYSFLEIYKMNIEYMYAEKHESRLSMSEK ASFGEDMPIGQLVEKDQEEEANLGDPMSDNDLDENETAPESNSSFEVSGEEDVDSDGE CDEELEATVLKIMEKTKEFRKLNKIWKADDILDLEIYHLPQLYMKCQGKENKLPVNVQ VVKIDPFMVAAEINSVGRSVIDVGLDILIELGELVLNPIAAFNEHFYLVKKRITAHSD RGDIFNRCHPRDPRIEPPVWYEFCQAAEKMSAEAKTKHPRANQYPSKFSYELIEFLRI RIGRTTRARYQMDFKFLNVHLILKMSETTGYPTRRRQGNVRLRKFQCLSTAAGMRKNN LHKYLY" CDS complement(join(334579..335564,335610..335781, 335824..336156)) /gene="CBG28019" /locus_tag="CBG_28019" /standard_name="CBG28019" /product="Protein CBG28019" /note="Predicted" /db_xref="GOA:B6IG15" /db_xref="InterPro:IPR032848" /db_xref="UniProtKB/TrEMBL:B6IG15" /protein_id="CAR98845.1" /translation="MEALAPNLPQIENDGTLFKKPLPPAHFKRYKASRQLRKKIRKRE PKTIHLPLNINALLFFAKRAKTEQLKLFPMKLGMICVIGNHSVSIPKVIIDEYKSYLD KVKLVKIQNAINNLIARSSGRVTVEHEEKENEDDNMEEGEIFQNEEGEEEFEEGEDEI QEEEDVDSDGEIDEELEAVVRELERKRIEKLKIECAAPAAKEEQFSEAANNPTEAPTT QGYWTPQLVSANAATTPLINVPNDGWDMSSASVFRSITINEKKFFSFVNLRVKLQLFY KNSKRRENPAPLQRILDVKDYMTEEMKKSDGRSLIDLAESILKEMGQMKVGETIDANI FNTHFFLVQIKVPNGATYVRDLNRCHDRIPVLDPPIMYEMVENEKVSPHTGPHPRADK YPPGFSYAMIEYCEDPYWMHPLIVQSSGIKAPTRPSDHEEQMRELFTVPPFDSDPEQV PGVSVIPIPQEALDLQYARRDAFRREQAAAAAENDNAGLDGEEHDD" CDS complement(join(341720..341836,342309..342452)) /gene="CBG28020" /locus_tag="CBG_28020" /standard_name="CBG28020" /product="Protein CBG28020" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG16" /protein_id="CAR98846.1" /translation="MSDAELEAVIALCSMMSVDDDFAPPAPKKRCVEAVTPPKEKGNS KGTIVPKSSTCQAASSILPTKNSIDIKKKYANQEPSTSFSGN" CDS complement(join(343245..343340,343480..343686, 343974..344075,344125..344424)) /gene="CBG28021" /locus_tag="CBG_28021" /standard_name="CBG28021" /product="Protein CBG28021" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG17" /protein_id="CAR98847.1" /translation="MSYLLGETEADVLKVYVKVLERTKKPAEKLGIAVFVMPLARKLY KWKLIQTPVWKREEARRFGYPFDETQFSPEIRQAFVEVDEMERQRLVAAHIERRRAWA EKRSAEESANQINGAQNAENSREASCQESGDMQATEDNEAATDSNGAEDSVDRLDAET ETVAALCMMEDSGNSRTAVPKAPKRSSKASDRQESLKKRSKIEAPTGSEEEDDGNLES SSVFTGPMNPAIPSSS" CDS complement(join(344926..345278,347331..347824, 347901..348118,348153..349518,349565..350059, 350162..350391,350788..350922,350971..351063)) /gene="CBG05297" /locus_tag="CBG_05297" /standard_name="CBG05297" /product="Protein CBG05297" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZK0" /protein_id="CAP25810.2" /translation="MSHKFVACDAARERKNRAYAFANQQILKYALVQHAWSTLDIEDE STWEYINSMEISELERKKFEADVLTNNVQSNIKFLKAEENPLPLVVKLRAFRGRGDFS QRNQQRNNNWTRQNFAQQQNYDHQADTFQAPQNSIYPLQQYFSGPLQTVPPMAVPISS APVAYVPVNHGYNNTFSAAPMQNSYSQSNQPNGGYYPSPTKLRDSGVYTSLTSNGFQG SQNIQYIPASYPLVLFIFSIYNITIRFRSDVPFPSGPCGYAPVPHGNTVSTSHGYSQS NHPNCGYYPSPTESRDTAVYTSASSYGSERCQSVQQVLAYSPSDDPYASVFSPEASQI HDSSPSRSLRQDAYRKVQTANAKPLIQTTIKVEPNYESNLQVVSGQHEEPQLTVEDDN GNKDTPQQVSSDVATSLVALEKPAEFMESTDFDTEKIEKQDTSDEATVTVAKQRNSES VLPTAPEFAKFVEEVKPLTIGTTVEDNIQTTTEFDLGKESPIVTDDVSGASNSDLNCE LSKLDKSVQSMKTTNFDNEELKDQFTSDEATLTLLPHAPESAKFVEEIKLLPIIKIHA ECGIQTTTELTVGMSKKIIVLQHEEPQSVIGMKNGKNDQKLQISQAKDIDTRPNVAED MSGASNCDTSPEHNPSKLEKPVMSTPIKPSDVETEELKGHTTSDEGATEPNISELVRK LADDAEFPALTSKTLYSVVKCSKDAGVPVGENDKLSKPLMSEVLLAAIEKDKGTVNSC LNAVPIVQQCPNQMKNKNLTDTDGIATKSQSSKSHSITRNLRLPKTTCQPSKNSKLIK NCRFKHIEILRASTSEWETVKVSSKVSNNTKKLAVLAEQPPVAKDRKKSPSSKELKAS TISTTLKTEQSGKENLAESNTDKPDQPEKSQTSKSSQKKSMRNKKKVQKAKAARPSVI EDFDTLLKQFKEEDRKSAEKKGEVREVVFEKANGNKKKRTIRQYQAEKWKYEAEKEEA KRNDQELLDSVENEQKQLDICVNFGLPLFFVELDNCVKNRSPMFNWPECPVRDFSESD ETTRDRDELVLKFINIRISDQFTTCMLQDLFYSFLGRHYNSNLGPILEPLARIRMERE ITLADDWELIVRMLNKREHRAEWNECYFYYMRSTDKTRF" assembly_gap 345698..346456 /estimated_length=759 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 352701..353442 /estimated_length=742 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(353625..353992,354247..354752, 354803..354913,354960..356402,356449..356679, 356791..356931,356978..357208,357300..357526, 358020..358154,358200..358299,359018..359321, 359798..360282,360333..360443,360491..360777, 360813..362214,362261..362491,362596..362846, 363359..363493,363541..363639,364296..364406)) /gene="CBG05298" /locus_tag="CBG_05298" /standard_name="CBG05298" /product="Protein CBG05298" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZK1" /protein_id="CAP25811.1" /translation="MNIELSQTVQRWCIPKRSTLAQEFPQLLIVKEKTKSYVTMSHNF VACDAATERQHRAYVFANQQVFQHAWLRDAWATLNIEDETTWEYVNFMMISELEREKF EADVLARTVHPNIKFVEAKVHLLPHVFSQKAPRGRGNFNPRYQQRNNSWTRQNFAQRQ HFQSPQHNYDHRADTYQAPQNSFYPMQQYFSGPFQTVSPMAVPIPPAPVGYVPVNHGY NNTFSAAPMQNGYSQQILPNGGYYPSPTESRDSGVYTSSPSNGYEGNRNIQYIPAPYP NDEQHVPAFPSDMAQIHDLLPSRSLRQDAYREVQMVNVEPQMQTTIEPEPNFEKNLQI ISGQHEESQTAVEKDNGNDDSSLQVSKNVATLQVVIEKHAKLTESTDLDTKEIEGQDT SDEATETASMPSNSESVLPTAPKSAKFMEEIKPPSIGTPVEDNIQTTTELEFEKESPI VTDDVSGASNKDLNCDLSKLKPVQSMECSDFDAEGLKDQFTSDEATLTLVPHAHESAI FVVEAKLLPSIGTTVEYDIPINIELELQTESQIVTEDMSGATKKDSDLNCEQSKYEKP VQPVERSDFDAEGLKDQFTSDEATLILLPQAADSAKFVVEAKLLPIIETTAVCDIQTT IEFQVEMNGQMLVQQHKKPQMAVEVDKGKIEPRLQISRSKDVDTRPNVADDTPGASNT ESDPSKLEKPVLTTPMTPIDTETKKLKGKITDDGPADPYNSDFIIPYISKLAEDLEFP SPLDADVPTVENEKPIKPLMSEVLLAAIEKEKGTVNPCLNAAPILQRNMCQKGNKNLK SCTNSHASEATSLSQIKKSDKRFHNKTPKAPKNQLPAKQEQDSTSEWKTVKGSSKDTN NNKKLAVAEEQPPVAKESKKSPSSKELKASTTVSSISPTLKAEQSGKENLVDSTTDKP DQPEKSQTPKSSLKKSMKNKKKDKKAKTAKSSVIDDLDTLLEQFKEEDKKSAEKSGKV CEAVFDPANGHKKKRTIRQYRAEREEAERNEQEVFDSLKTEGQRLEICVNVTLQQFIE ELNYCVINRSPMFNWPECPLRDLFESEEITRKRDDLVLAFIHSRISDQFERVGTTAKL RELYYRFIRRHYISNLGFILEPLAQILLEITFEDEREFFGRMLNKRELREKLKMSHNF VACDAATERQNRACAFANQQVFKHAWVQHAWSSLDIEDESTWEYINSMEISELERKKF EADVLTSNVHPNIKFLKAEEDLLPFVVRLRAPRGRGDFNQRNQQRNNNWTRQNFVQQQ NFEQRADAFQAPQNFNYPMHEHFSGPLQTPPMAVPISSAPVNYVPVNHGYNNTFFAAP MQNGYSQSNQPNGGYYPFPTESRDSGVYTSSPSNAYEGSHNIQYIPASDPRDVPYASV IPPGVSQIYDPSQGVPPQSVDFNYPMQQYYSGPSQAVPWMAGKIPQGPFGYVPVNRGY NNTLSAAPMQNGYNQNILPNGGHYPCPTESRDSGVYTSSLSNGSEGCQNFQQVLASSP SDDPYASVFSPEASQIHDSSPSRSLRQDAHRKVQTANAKPLIQTTIKVEPNYESNLQV VSGQHEEPQLTVEDDNGNKDTPQQVSDDVSTLQVVIEKPAEFMESTDFDTEKTEKHDT SNEATVTLAKQRNSESGLPTAPESAEFVEKVKPLSIGTTVEDNTQTTTELVLEQEGSI VTDDVSGASNKDLNCDVSKLKPVQSMECSDFDAEGLKDQFTSDEATLILLPHAHESAK FVVEAKLLPSIETTAVCDIQTTIEFQVEMNGQMLVQQHKKPQMAVEVDKGKIEPRLQI SRSKDVDTRPNVADDTPGASNTESDPSKLEKPVLTTPMTPIDTETKKLKGKITDDGPA DPYNSDFIIPYISKLAEDLEFPSLTSKASDSVVKCLKDADVPMVENEKPIKPLMSEVL LAAIEKEKGTVNPCLNAAPILQRNICQKENKNLKSCTNSQASEATSLSQIKKSEKQFY NKKLEPPTNHLPAKQEQDSTSGWKTVKGSSKDTNNNKKLAVSAEQPPVAKDSKKSPSS KELKASTTSSSISPTLKTEQSVKEILAESFIDTPDQPEKSQITESSQKKSMRNKKKVQ KAKAARPSVIEDFDTLLKQFKEEDRKSAEKKGEVREVVFEKTNGNKKKRTIRQYQAEK WQYEAEKEEAERNGQELIDSFENVDKRLEICVNFGLPLFFVELDDCVKNRSPMFNWPE CPVRDFSESDETTRDRDELVLRFINIRILDQFKGVGTTCVLQDKFYSFLGRHYNSNLG PILEPLARIRMEREIILHDDWELIVRMLNKREHRAEWKEFNFHYMRSTDKIRFD" CDS complement(join(364834..365189,366348..366766, 366813..366926,366974..368275,368385..368590, 368896..368930,368977..369112,369161..369253)) /gene="CBG05299" /locus_tag="CBG_05299" /standard_name="CBG05299" /product="Protein CBG05299" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZK2" /protein_id="CAP25812.2" /translation="MSHKFVACDAARKRQNRAYAFASQQVFQHALVHNAWATLDIEDE MTYEYINYMKISELETKKFKGGCAHQTALVHNPLTKLQFIFLIDKFVKTDENLLPLVV SQRAPRGRGTFNQRYQQRNNWTRRNFAQNQRFQQQEHSNYPMQQYFIGSSQTVPLMAL QIPSCPSGYAPVQHGSYNTFSAAHGYSRKNQLSDGHFPSPTESGNSDVYTSSSTNGSI AEQNIQQVQTIIGFELAEEKNEQIILQHHEELQLVAEVKNGKKDVVTLPNGADDISGT SKKDAYLSCDLSNQGTSDEVTMKPSNSKSVLPTAPESAKFVEIAELPPSIETPAETAI QTTAELKLKKESPIVHDGATKIDTGLNCEMSKLDKPSQSMETTDFDNKEFKEQDTSDE ATAAVSKPTISEFLLSPALESIVAEDMSGASNMGDLSKPLLSTSIAPTDTETEELKGK TTDEGATEATNSEFMIPHAYKSTEDLEFPERVVSVSAEKRSKDAEMPAVENQKPSKPL MSEILLAAIEKEKGTVNSCLKAAPIVLRNICQTENMNVTDTDGMAKKSDSKAASSSQF RKSRDRFHNKKPEAPKNHLPAQQEKDSNSGWKTVKGSSKDSNNSKKLAFLQNNHQLPK MAKSESQSTSVKRSSGTVPAISPTQRTEESENNTQEGSSIDKPDHPEKLPMPVSNQKK PVKKQKKDKKDRKSAEESGKVGEAVFETAKGNKKKRTIRQYQSERVEAKKKEQEIFDS IEKDGKRLDVCVNMGLCQFFEELNHCVITRSPMYNWPECPMRDLSENEDITRERDELV FDFIQSRILDQFERFGTTPILRELFYHFLGRHYNSNLGLILEPLAKVLKDRDITFEDE KELFGRMLNKRECRAEWNVFNFHYPDASNE" CDS complement(join(371696..372027,372075..372194, 372246..372610,372655..372744,372802..372936, 372982..373551,374043..375397,377977..378132, 378180..378275)) /gene="CBG28022" /locus_tag="CBG_28022" /standard_name="CBG28022" /product="Protein CBG28022" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG18" /protein_id="CAR98848.1" /translation="MLKPAVSHSEKDQLEINTAYRIKEQNIFQLNMKLQKWERLDLSD SFTRNLIIEINADESKMQKFNEDVLRNQFDPRIVSLFLKSKFLPMADASNQRFTQPTN TPVVFGKSPEEASGGRSFSQLQIIPPPIPSDIPAQENNYTKKSKDCPVFSLSNHIPLE TCQIPPQQNRAMPPQNHQVAAPSNFMRSKNCLMPNPQNCLIPQQNCQMPPTYNWPMPP PPSRAALQNSPVQSQNNQMVPPNSSWTSQNIQIPPGNVSMPSKIPQLAPFNVNASETP FLMQNQNFPMPFQQNSMSSPFNPRVFPNSELPPNSPMTSGNLSVVPPRNPTVPHQNLP ITFQTSHMEPRNISMVFQNNHPKARNVPMMPQNKIVEPSPMAPFHFKGPPPNIQAPQG FPPILCQTFQGPPPSIQGPGGYSTIPPPNIQSSEGYWPTPPRTVQGPPSIIQAPLGLL PIPSQNVQGTPHNSHGPPPYSQRHTHGFPHGPPKNQNHGNGNEPQSMRRSIPVVKVLA PHSKPNVDDIMKIDTPSTTSSNDTVPDWDIITRFFSNHGDVTANLMDTQKARNLNQQE IHKNEQDFLTDPIPEVPVGEPSVCERHDAKTESASIPLEVVSTQSKNKTDRNPDNLAQ LPITTEVSFLVDTTVEITDSEHEPKSILTPEADEPTLPRKETVKDDVATSIVPVTLSE SDVFQNSPRLCKNLHAKPTAADRGVMGKKEHAKPDTSKCKGKKNRNGHKAPSPSPKPS MTSRYAISGSPTKPNISSQVEKKPENVEHKKVITAIIINAPALKIESNKQNDVNGSET LKTKPEDEPSCSLQPEENNGKKKNKKAKKTKSGKETNVEEDFDELLKRFQLEDEKNKI SDGDTKTKSAPKTTKRRTIKQYRQEKAEAEAEAAKAAEKAASPIEPAIQTLEDLYEFE NFDEEYCVVTDIQNIHYPTDLPAIPEEVVTRVQKQIEEFVADVKECIREGNRLPYWPD LEFKLEDSLDLEKVNQDVLDFFSSKFSDLRRSDTPWAQFRRLFYSELVKAFVPQIWPV FAVLLEKGKNGSLNFMREMSIISKICNTKENKNLDRITYFSF" assembly_gap 375594..375603 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(381060..381161,382203..382634)) /gene="CBG28023" /locus_tag="CBG_28023" /standard_name="CBG28023" /product="Protein CBG28023" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG19" /protein_id="CAR98849.1" /translation="MSYLCGLTVEECFLLHKITEKREKDFEDKSLLKIVLHNSMLKKT RKWRRIHKVVQLRNLAEATGQPFFENRYPLEYRQAFAEVDREKADGWENIDNRQDESD LSSSSDSSDSSDSSSSSSSDESDDDDYGEQPSTSDGREKIIYTRKRHAQRSAPNPSSN AKRGKMADSRTKAQKKE" CDS complement(387204..387713) /gene="CBG28024" /locus_tag="CBG_28024" /standard_name="CBG28024" /product="Protein CBG28024" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG20" /protein_id="CAR98850.1" /translation="MDVDVDETPISPHNDADNKEEKAELRVDAGLEYEDIIDGDDINF DEEIILEEGIVDEEGIYDVDELFDEELIAEYQEIKTDVEEGEDDELPAVHFNEVLDDI LSTSRASEIPSAHSNQFVAYRTFVYNPLQEAVLPGPDAHPSWHKFVHIGEDRGDRNSR IEPVAAAPL" CDS complement(join(388284..388373,388708..388864, 388923..389058,389105..389189)) /gene="CBG28025" /locus_tag="CBG_28025" /standard_name="CBG28025" /product="Protein CBG28025" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG21" /protein_id="CAR98851.1" /translation="MSNFQQKSQPPDPNHSFTTFDIAQTKSSSERCVRQKNNFDTSVE TSNMTEYNGQCSSSSAFQETNDYYPSSSESATKHLKFQEFLAFTNDFYRNRNQLLLRD QLLRKRRRRKKKKGLSAEQEERLEIGNFIRAIRKGIRIFQHTKAATQTSKSRK" CDS join(391280..391338,391395..391869) /gene="CBG28026" /locus_tag="CBG_28026" /standard_name="CBG28026" /product="Protein CBG28026" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG22" /protein_id="CAR98852.1" /translation="MATYEELLAQSFGTDEQRARYRTFPRPRPRRRAPEPPEYYGKVM TTCCIATDSLIYCVQYSVKAVVKLARSFCISLNQEASTTDPENTNAVETVATDDADTD TIFTDDDENDSTITTEDADTLPIDEVESKPSDYAYAYNHGASDGEDTDNDAFEIEDSQ DEETDGYAGDSDATLEN" CDS complement(join(397450..397614,397659..397790, 397837..398475,398523..398620,399214..399354, 399714..399831)) /gene="CBG05307" /locus_tag="CBG_05307" /standard_name="CBG05307" /product="Protein CBG05307" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZK3" /protein_id="CAP25813.1" /translation="MSSNCGSLDYSINTVTSQLPEVRIDETEVIAYVSDFLSGRTLHL PTMPDEKHRKNHDEHYEAAMEAEIMAGTVAGKHFREELLGNDACDNAFINNFNHYGGD GDGFVDISQDPYAMDGVLAHRVCNVAEQLRSLKVSKIKTKVQKWISEHQKKSHMKSFR RRCISMPPEESLFGFWNASSTSPDTDNFSCVRFEKSMNMVNESLAAPPIDPRSSTNFT VAKKFSKDFGAWFFDRFNLDKNFQDDFGLDKNDDEYFKSGLLVIYMPDNKKKELIYFR GVYIGNDPSDASRSIFWSIDTADFLSISPSKDSLRTLPMEFHFHSNMSNFIASSSDMF KSWSSLPKYTRLVDTDNLWNAQAKEYIQIQLEKEKNTGDETKAGSGVNIETLFCTGIY CMGMCGMKEITKGIIKPEKVYGTMQWVADKPPRRHRRY" CDS join(400483..400505,401329..401400,401503..401601, 401648..401722,401950..402097) /gene="CBG28027" /locus_tag="CBG_28027" /standard_name="CBG28027" /product="Protein CBG28027" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG23" /protein_id="CAR98853.1" /translation="MFSNRVGLTINDSEDSSDCSNNESLCLPHFSTFGGFQQLKTNVG TTGNHFVSAEVTARFLQRSLTFAGASQSSNKKSVVEEVITEQPRRKVEEIPKPFEPGP RTEIRWHNAICCAVIEAMATTLEVCMACFRCQGGHC" CDS join(403206..403264,403355..403435,403734..403829, 403924..404037,404092..404187,404241..404342, 404565..404697) /gene="CBG28028" /locus_tag="CBG_28028" /standard_name="CBG28028" /product="Protein CBG28028" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG24" /protein_id="CAR98854.1" /translation="MSRVLSFESIPAEMFERESSDCSTEPWGDYLSQTSYKETMISSQ VLSDEGSEHLDDFVSVASFQSGSEDVYGTPPRSLTFGGFIKQKPLLNMWSYDSIPEKI FSSQPMIPASDEASTYLNGEAKSSYKSQSTLGSGRTISAELIPRADTFSAFEEPSAIS YKLSFGSIPKENMKPNFVSRSPLDESDQQPQDPGPKVPIVWSNCICCVTVEIMCHIYE TCLAICNR" CDS complement(join(404953..405108,405152..405244, 405293..405394)) /gene="CBG05310" /locus_tag="CBG_05310" /standard_name="CBG05310" /product="Protein CBG05310" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZK4" /protein_id="CAP25814.1" /translation="MSSETTVAQRLFTDKEIKDLNGKVQCLQRLVNHPRCKIPELRLT YTNLLTCMSNLDADSRKPYTEDGRQDVELGFKTMAILEDTLIRVVLGGETVSNVLIRN MSILQQTGDSYSSQ" CDS complement(join(408663..408698,408784..408966, 409039..409374)) /gene="CBG28029" /locus_tag="CBG_28029" /standard_name="CBG28029" /product="Protein CBG28029" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG25" /protein_id="CAR98855.1" /translation="MAFRLGEIRADIFQIYRKACKEPTSISSTPNVTIYSDLHRHVLH KGIMEKLTVWNRIEEAVTKRDQAMKMGLPYDESSHSSDEKQAFSELGHTESKRSCRMN ARAGQEMKPQVHSKKSKTSRKPKAQVKKAEIDLLNEENDSPVLHSMVPEKRMKCDTEQ TSSPHSPEQIVKSPDSACTLKIED" CDS join(410659..410748,410792..410920) /gene="CBG28030" /locus_tag="CBG_28030" /standard_name="CBG28030" /product="Protein CBG28030" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG26" /protein_id="CAR98856.1" /translation="MNRTYVLVALLMFSFSRFGFSRFGGPCFIEYHKDNVFTYCYCKF SRCNVPQKPIRHDRYMARMLLVDPDHPD" CDS join(414003..414095,414140..414317,415099..415193, 415866..416016,416062..416302,416349..416459, 416509..416536) /gene="CBG05313" /locus_tag="CBG_05313" /standard_name="CBG05313" /product="Protein CBG05313" /note="contains similarity to Interpro domain IPR000626 (Ubiquitin)" /note="Predicted" /db_xref="InterPro:IPR000626" /db_xref="InterPro:IPR029071" /db_xref="UniProtKB/TrEMBL:A8WZK5" /protein_id="CAP25815.2" /translation="MFQLMIRSIKKDNFCIQLESDQVKVSEVRRLINEHLGMVDGDFW MNTNCRNLDDQKTLAEYNLKDFACVDVMFRMRGRPGHDCPGCQKSRRIVLVSIQDSTG TTHNFELESNDVTVSHLRECIDSYLLDQYTKYRLVGNFGIMQNDRTLSSYGIQREAYI YINSATPESAYETMFVSPQENTAVEAIRGARRVVKLTEKEWREQCREREEYQCRLERR QRRRDREENRRRAREFVDDEMPDELIPSLPAKRSKSSQHNDEGREESQQRMEEYVEDE MPDELVPPPAKKSKETHYYNKM" CDS complement(join(416821..416905,417294..417452, 417500..417735,417782..418258,418304..418624, 421724..421894,421942..422106)) /gene="CBG05314" /locus_tag="CBG_05314" /standard_name="CBG05314" /product="Protein CBG05314" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZK6" /protein_id="CAP25816.1" /translation="MNNSSSALTVTTQPEFTHGYPVLVTFYIGPTNQKGRHPAIARET LTPIMIFKNTWAELTKTLGRFFNKNLPLLIVGRDIRVKDNDDFITRMTNCRFLHRATG CYHILVRIYPIMIFHKLCFLAYFVSVATATIKCSGRHSCYAESPECDPNTDCQTVLRF DPSGNVNIFVRNMSVTDYVSIVTDRDLLNTMEFFVCVPFAGQRLRGLGRFGQTILINQ QNLTNVVEQFETNSFRCVINQDELKPEFWLNKNFIVSRGRFQQFLRVNEGCKLYKLEH EEDLESEQFFPTAYRTPKALKKTEIASTKFEDVIEISKMLQNVKQMFVNAVKQEKMDK EHLHKKSGSNGHKRYYPKSDSYESDKDTKQNKAKLIRESDDSRQDKSRDVIVSKARSH KKSHETKSHKNQTISNKSEEVMSSKMKPVANDADLDTKVYVRMTKKQMYTFIDGLEEG KSAGNETDLLKSNASTLNSEVEEPRNSATDDEIVFVLMTKRQMHTMIGTKAEHQVSGT KMFAEKRNYASSGVHFGTTLLVLSVLLFL" assembly_gap 420188..421186 /estimated_length=999 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(423330..423647,423693..424169,424216..424451, 424499..424657,425046..425130) /gene="CBG05315" /locus_tag="CBG_05315" /standard_name="CBG05315" /product="Protein CBG05315" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZK7" /protein_id="CAP25817.1" /translation="MIFHKLCFLAYFVSVATATIKCSGRHSCYAESPECDPNTDCQTV LRFDPSGNVNIFVRNMSVTDYVSIVTDRDLLNTMEFFVCVPFAGQRLRGLGRFGQTIL INQQNLTNVVEQFETNSFRCVINQDELKPEFWLNKNFIVSRGRFQQFLRVNEGCKLYK LEHEEDLESEQFFPTAYRTPKALKKTEIASTKFEDVIEISKMLQNVKQMFVNAVKQEK MDKEHLHKKSGSNGHKRYYPKSDSYESDKDTKQNKAKLIRESDDSRQDKSRDVIVSKA RSHKKSHETKSHKNQTISNKSEEVMSSKMKPVANDADLDTKVYVRMTKKQMYTFIDGL EEGKSAGNETDLLKSNASTLNSEVEEPRNSATDDEIVFVLMTKRQMHTMIGTKAEHQV SGTKMFAEKRNYASSGVHFGTTLLVLSVLLFL" CDS join(426552..427620,427671..427760,427832..427854) /gene="CBG05317" /locus_tag="CBG_05317" /standard_name="CBG05317" /product="Protein CBG05317" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZK8" /protein_id="CAP25818.1" /translation="MSDQPNNVESSDDDDIRIGPLPNQSWDQYWDFMDPYDAKGERAL RLREKVFRNMRVLDAELGRNFRSLFRKAIYAIIDYEIPTSMISRLNDFSVEELIKLIC TQNQEVWPKSVHHISVRSLSRVKEHNEKKNNFIRSNQQWDIKNYRECFDDILKNVLYL HAKHGEMFVRALTEFLRQYGYVLCGDGSGIHGYVTRQKLFGKTRSEFFADHPLPKRIA PRMQISERECRPDFTDEEQNPYDFKKLFHSCLECVLQYQTSEDCGYAFRIFAPWLDSA KKALDNCYADFLPRDRKLMRNQEGKRLFKCKMEKNELDLYVLKECVPEDERISMKLDV VKTDVSKHKAKKRKLDTAVKKLKKPAVAHKTNEISEPFHRFTPFPSKGGFTNYSTRIT Q" CDS complement(join(429239..429393,429445..430246, 430295..430433,431301..431581,431631..431887, 434835..434934)) /gene="CBG05318" /locus_tag="CBG_05318" /standard_name="CBG05318" /product="Protein CBG05318" /note="Predicted" /db_xref="GOA:A8WZK9" /db_xref="UniProtKB/TrEMBL:A8WZK9" /protein_id="CAP25819.1" /translation="MARELNGLYLSNPSMDSQQHQRAFSLHDFPPISVPANFAAPSLF DTARAGALNYQNNYNGYAGQGGYYGGPAMQAQPAIEVQHSVKGYGLLTWLSSKAGVIT NANKTTVSFQLKEFCDQGVNDLTQVLRVGFTLKYHALKADGEQYTATQVSPVFGAEAD EIFDNAPEIDLQSKNPTPVNAKESYAPDLEFCAYGALLGTFQRQGTHKLQLSNLHSHI SNQGDEKLFRYVGSSSMKRRNFIERRTHVFHLTNDDSIYLQHPAIYQAVYLLSTYLLR RGGVVSIQSLFDYFNSDSVEKSVRDCIGYDNGSFLTLLSSHNFAFAVFPNRTYVSARR NLPNYDYPGFINQFFPSIFGMNNRSSYEHQQIPRGIQRTMSVPMGDGYGMGRQHNGYM HRRAAHPWGNQCSQPNGNRPMSLMDSHLVSPHLEDHWNTGSNMGLWSNGGLNTIHSSR VGSPGGDSYSDHTVTSELGNLKHLRLNTTKASTGTQVGVSVIGQMACVCHCKCGRGSI GPIGTSLAALPEISPEVNNLGFMGNRPLSISTASSEETQLPTTDSYNLFSGPNDFLSG SMDSLRLSIFN" assembly_gap 433803..434260 /estimated_length=458 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(441217..441355,441613..441710,441961..442286, 444231..444348) /gene="CBG05319" /locus_tag="CBG_05319" /standard_name="CBG05319" /product="Protein CBG05319" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZL0" /protein_id="CAP25820.1" /translation="MNIRYEEFTLVSEASSHIFGFQIFYLSFCEPQRHSSLIVSKLPS IENIMNNLPLNLEAMNNAPIGDQVQMNNFLMQAAQVKLLLENQSQQHEKFRQEMMEHQ TRMTNLAMEICTFLVHEQEENRAVIKEITDSMISRFPGPCVPVLCDCDDESEDKEEPT PMSTRRRSPRQREQATPYASGRKSTRNVFTFNGIVIEGTETPNDLGIKYDDEIKVILI YKRPVATK" assembly_gap 445444..464774 /estimated_length=19331 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(466030..466203,466842..466994,467046..467150, 467198..467275) /gene="CBG05320" /locus_tag="CBG_05320" /standard_name="CBG05320" /product="Protein CBG05320" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZL1" /protein_id="CAP25821.2" /translation="MYDLQIYGDSSSDESNSDDESNDEEIIEAENREIRQEIEEQLDF FRNFMANRNGQNVEPQEELNRNEMPMNENARYGENGEGEVGVENDEDDEWSQAQFAQN NSLLNLEPSEHQERNETAEIGNDGMNDWPLEILARTFRVELNVLEMAIELEAVVEQFE ANEFENEEF" CDS join(470747..470810,471427..471983,474527..474690, 474763..475044,475792..475864) /gene="CBG05321" /locus_tag="CBG_05321" /standard_name="CBG05321" /product="Protein CBG05321" /note="Predicted" /db_xref="InterPro:IPR001810" /db_xref="UniProtKB/TrEMBL:A8WZL2" /protein_id="CAP25822.1" /translation="MSLETSRIDHIGCGTVINQSRVQLLTANMSQPIPTLNLPDHKEI VDDESPEDDLGLPSPTTNSVATNQRKYSKNLEEFYGNPIGMEETAPVPQNGNLLSATD GNNMEVAGASSENRQKLRSSMEKKKEAHGEELIDFKTALGDDEYFDSQRHRGGHQSRA STSLGGSMSARSTGSSVFEQGQAEDRSEEGWLSYRPAATTLSNFIAWSLVTRMSKNAQ ENGKIKRIKEAVKEEKDAIQKFPMLKLPDLVRETVIRLMDPVEIFDFSQISKRMHRTA KRSVRHNTYHLHLQAGQLYQAALYPPTYPEVPAEPARFRVQQLDDDTARAPTNVRKLG NFQKIRCHFQESGLYFFHKSHCRYTLHADIGGFHFNLVNGDLGSI" CDS join(478748..478821,478915..479044,479404..479559, 480693..480822,480874..480959) /gene="CBG28031" /locus_tag="CBG_28031" /standard_name="CBG28031" /product="Protein CBG28031" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG27" /protein_id="CAR98857.1" /translation="MEGYGIGGDKGKASGYGLVFRFTKPLSSTGHQNDKRCVSRICGC QKSPNLRSRQKLSSTDGKDERTFAVIIYWPPENVSNVSSTCGHQKNRYLRPRLRWFST DGTKENQGTELAQEKPFDQQATSSLYVSNAVSDWCKGMCSKKTPKILRTKIEVIFYCI RDMVFPSLRTIVQCILILLAINAILSTLSEL" CDS complement(join(481993..482109,482157..482471)) /gene="CBG05324" /locus_tag="CBG_05324" /standard_name="CBG05324" /product="Protein CBG05324" /note="Predicted" /db_xref="InterPro:IPR035291" /db_xref="UniProtKB/TrEMBL:A8WZL3" /protein_id="CAP25823.1" /translation="MFSFSRVVLASTVLLSPMATLALNTVEQAKQDATGLLRCWEPTE DGNYSLSKPVFELCSYMPAANNFESFHVNGVDMSSDNYENMIKMFEEQHPKHALVNLC LQEAYQLQKPAIPSQSLIRCICKRDVTYRCRSFNFWMQTRK" assembly_gap 483428..483665 /estimated_length=238 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(486508..486681,486776..487060) /gene="CBG05325" /locus_tag="CBG_05325" /standard_name="CBG05325" /product="Protein CBG05325" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZL4" /protein_id="CAP25824.1" /translation="MSQFIFILCLLAGTFWGFVPNDPDFGGIIGYPHDDIHSLPSAFA SFSDTPHQNPDEEIICEDKFNKCESYVRPYSNHTKILDELAGYLSTITPDIKVSVTLK SALPIGDRIKFNATAIGISSSTIDVEFVLNKPDQQLAYAQVHRCPIPRDS" CDS complement(join(490575..490694,490867..490917, 490966..491073)) /gene="CBG28032" /locus_tag="CBG_28032" /standard_name="CBG28032" /product="Protein CBG28032" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG28" /protein_id="CAR98858.1" /translation="MGSKSSKRAETTVDSAESDASSEEANGLMTLSQEQVEGARGTLE EIMARMDVEKSLHGTASDRYKKMVKQKEILLEIIRLDKNPAPFKRSSP" CDS join(492618..492740,493197..493454,494318..495020, 495523..495722,495771..496369,496419..496646, 496696..496780) /gene="CBG05328" /locus_tag="CBG_05328" /standard_name="CBG05328" /product="Protein CBG05328" /note="contains similarity to Pfam domain PF02373 JmjC domain, hydroxylase contains similarity to Interpro domains IPR013129 (Transcription factor jumonji), IPR003347 (Transcription factor jumonji/aspartyl beta-hydroxylase)" /note="Predicted" /db_xref="GOA:A8WZL5" /db_xref="InterPro:IPR003347" /db_xref="UniProtKB/TrEMBL:A8WZL5" /protein_id="CAP25825.1" /translation="MERSEGSSSPGKDEENAVAQEKIAEVVQGAKNHVRSAKRKKSAR SSSASNGAKKQKRAVKKNKTDPIQAQPDCSGGIQKTAEEIKEFSSDWLARKVLVSSHI EMRSKGIAASSEAIEKMKEIARSVKESHCHDCHVELSDDMPDRKNYRWMEEKLHSQVL AEPVAGPTTPQDSEDRIPFNIHYTGKPFFDPKTVKGQDIVDAAKTGNKGFEDFDEQRN KFLYEEDTGIVEEEKCFFAGRGFKPEESKGYVPIPKFQLKDDSEESWNKLQEKVLGTS MCLIKGIKVNEETFSLETLAKVAPKYKLRILRQLPQPTLCNFVQKPIARGSRAGSRRW FTEQAEQFTTVKKYSEYFNGMRAAGEKAVRKIYENPETADEVLKKLEGDLKKVAGSVG IKLKKSYTHLVAFGTNFDVEERLADTKTFRFASQMAEINKFKAFLSPHGNLLGFTKVS LRGLNKPQIYWKVPGCRTCAHLENNGLGSINYNIGPGTCIWYGIPLEWAGKFQKLLKK RLGEDLGKALHSNDYWPSEEEIIEEGIPLQKFCQKPGDLAYVGNGTYHWVQSNDFTTN ISWNIGQPTFVQLATAAVVNDNYLANQTYSIMPLETICWNMIIEGFEMDQRMKELVKR MAMRSLSKTQSQLDFFVKKNIKIFAPSQLNKGIYGTERCRLCADNLFNYIPLISTYTS KDPRTGEPINTLQPYCIKCVESCQEWKGCKVYSRHTMEDLVKYLDSMEL" CDS complement(join(497407..497506,497550..497702, 498235..498320,498366..498449,498497..498655, 498702..498837,499052..499178,499249..499408, 499459..499533,499574..499713,499759..499853, 499899..500006,500057..500175,500220..500338, 500383..500455,500508..500627,500677..500736)) /gene="Cbr-flr-1" /locus_tag="CBG_05329" /standard_name="CBG05329" /product="Protein CBR-FLR-1" /note="C. briggsae CBR-FLR-1 protein; contains similarity to Pfam domain PF00858 Amiloride-sensitive sodium channel contains similarity to Interpro domain IPR001873 (Na+ channel, amiloride-sensitive)" /note="Predicted" /db_xref="GOA:A8WZL6" /db_xref="InterPro:IPR001873" /db_xref="UniProtKB/TrEMBL:A8WZL6" /protein_id="CAP25826.1" /translation="METENQNERIYLQLYDYETKEFSGLTTYHGLVRIYNSNTWPSRI FWSVVVLSCLSLFMIHSGYLLLGYHSKPTLFQTNTIVPMTGLSFPEVTICNLNPLDLS KVREMNASDSNLAYIMKYFNEITKSRNSANLMENQKFQQFIESYKESKGTAFDVNGFL QSVSKTCEETFVSCSFGREKLENCCQHVTTEMTETGICFRLSNKNNEYRQWYSGNGFG WELTLNGNNEDPEIYQNTQYDPERGFLIMVHESNKYPRINSYGVAVSPNSHLHAAIAM KNISLLDKANWGSCSKGWTRNDTVGIQYTANHCEIDCKLRKVQTECGCSPMAYSARTM FQNFNFPICTPLEISTCFQQLRGNDNRWDDGCNCPSECNLLEFDVTNSYSDLDSRSRG FTGFQVQNDISHVSLYFSRVAYERIEQQKQLQTADLLSNIAGSMGLFLGMSTVTLLEI FIYLFKSVWGTVNSTRQQQFVDAVAEEEKERAQSIVIIQNGGNDEDTKMPRFPASDRK MSGNSIHIHLDRRNSRMLRGGDLFSAPRGSVSIPSQLLSPLSKHSRKSISYGQLGRKV STIGLPQPQTYDSVESGTIPPKPLIRRCSTSTNPSMLTRKLSFASQQSDPAQPVHLSR KVSTSSIFKSQLI" CDS join(501831..501926,503382..503534,503622..>503645) /gene="CBG05330" /locus_tag="CBG_05330" /standard_name="CBG05330" /product="Protein CBG05330" /note="contains similarity to Interpro domain IPR009542 (Microsomal signal peptidase 12kDa subunit)" /note="Predicted" /db_xref="GOA:A8WZL7" /db_xref="InterPro:IPR009542" /db_xref="InterPro:IPR037713" /db_xref="UniProtKB/TrEMBL:A8WZL7" /protein_id="CAP25827.1" /translation="MDGMVAMLPTPLQNWSTHLDFEGQKLAERIYKITLTISGVVGFF VGFWTQQLSYALYTVMAGALITALVVLPPWPFLRKNPIEWHTPAKPE" CDS complement(join(504449..504453,504502..504621, 504668..504811,504859..505131,505176..505265, 506495..506716,506767..506856,507207..507293, 507546..507716,507764..507898,507943..508035, 509314..510415,512099..512263)) /gene="CBG28033" /locus_tag="CBG_28033" /standard_name="CBG28033" /product="Protein CBG28033" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IG29" /protein_id="CAR98859.1" /translation="MDELAEAIVAYKIAFSDWRNIRFSAEGVNKDKKELCICTPEIIL PSCRWRVCTYKRDAPAVIQNLKTNYQRYLELKHELSELRNYETTSSIQKLRCETKTSI NTWIKQPQSKEKQNELEQLFVVSVYTEDLMRKVFEDTASCEMNSDPEFLYQKFISVIE IMGNQDLLELWRIDCSEIIDGNLHEDINQEMLECEKVANWAQRSCRKIDYMFAEGKTL TANCNKMFKKAIDDVDYNSLVAAYEKMKESYSLTNRILVCAVPICFQLEELNENSYFI QTKAKLYWTYALDPRRTVRRMKYIAQKSHRICLPFRDTILPLWAAKKSELLRNRKDEW DNGSFKEFVSKMQQVLWTLKDINDNRHFVSDMDDINDVVMSKHFEELITQACEPDEEL PYIKPRTVSLEEKFEKRQQQYLRKFKKAAKGKRQPENLAEEVEALAIIAHFQNLRDEN GKREQGWPMNFENAQKNLREKEEELKLYMDSLKGNTIPLNLFDQGNRPFEGVIKPRRA QECEKSTTLYEELLAAAINDKNCSAYQELSDEQMIALIETNGVNGVNALNAEAENAPL DDANDANKKKEGFKVGDMTVATAPEPQPESVQDKNEKPDGEPEAKKPRLETNTVVDIS VANSESTLRGSTNSIFPNMPFFPTVFDDENDFAIPRLPEINLKRKKVLKKKRSTKRKR DLNEKKDKMNDLPKPASINHNIQAGYNAALRNLIYPDGLIDADGFAIPALPSESKTPS GCKIRIKINRDNDIIEYENVKSMRFGVISFWQKYVPENDGQVLEIKETDTSFNGDLDQ KLFAPITNATYENLEPVSPVQVPQPEPNVSWIDDNSQYPKDTLSENGTDEVYVPDSDT PEGLGVLHPMPNQTEIHCENNDIDKENEHNGPYIQYHFDTEE" CDS join(505665..505768,505814..505919,505964..506257) /gene="CBG05332" /locus_tag="CBG_05332" /standard_name="CBG05332" /product="Protein CBG05332" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZL8" /protein_id="CAP25828.1" /translation="MPKRVFKPIYVHDGFTLRTVQILSSGDELLHCTQRKTSVKCNAL GRRAVDGFISISKPHSGHSADDEVAIAKIARIKIKERAQSSAAAPKNILKEVRRKYGA RPVMIAGSTSTLGRLISRQRNKKQCDTAADVNAFVFQENNNELKINQILNLLENIEEA SRSPERC" CDS complement(join(514573..514796,515488..515803, 515847..516371,516420..516434)) /gene="CBG28034" /locus_tag="CBG_28034" /standard_name="CBG28034" /product="Protein CBG28034" /note="Predicted" /db_xref="GOA:B6IG30" /db_xref="UniProtKB/TrEMBL:B6IG30" /protein_id="CAR98860.1" /translation="MRNNVVITRKEPTFVWSPLMLFNRFATKEYLEQRRVGRLLKKAV KDVSEKKKRLQEQVLQRRSKQYYLRVMERKSVRFQKYRLRNFKLLKRWKDALQVAGLS EEICLAGKLVRQWRLTFTRTRAYVKTLQLLQDKYRTKCIRRWFQYIENLGQTQFVMIH RKSSEDFEKLLKLFKVGSEMVPVADRYISTTDKTELNKILEYLLAHDWYLGVLLPPKT PRDQGKCLIRNMTTFKIEEVPENKLISAKMLPKMSSKKRMMMKEQRAMRYRKRFQRSL DFVLAYDNQGIDLRLLRKFVNARKEKRSKRKIVITLLQCLSISTVVIFGLCFSYVIVE TFEHLAIKILDNLLKLFSLFFVPYQ" tRNA complement(join(519076..519122,519157..519195)) /gene="CBG29075" /locus_tag="CBG_29075" /standard_name="CBG29075" /product="RNA transcript CBG29075" /note="C. briggsae predicted tRNA" CDS complement(join(519794..520029,521310..521384, 521992..522046)) /gene="CBG05334" /locus_tag="CBG_05334" /standard_name="CBG05334" /product="Protein CBG05334" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZL9" /protein_id="CAP25829.2" /translation="MINQTQLPNYTMLSVSQRVYWHNCGRQYSHYFEYYTCEHADYGA MKEAVEDFINDKLETLTYDTSPMSNETRAFYWYAKENFEENLNLLMDIYLLDSMWHWG EHIESEPVEYYIMFKYGPY" assembly_gap 523363..527241 /estimated_length=3879 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS 527286..527519 /gene="CBG05335" /locus_tag="CBG_05335" /standard_name="CBG05335" /product="Protein CBG05335" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZM0" /protein_id="CAP25830.1" /translation="MKEAVEDFINDKLETLTYDTSPMSNETRAFYWYAKENFEENLNL LMDIYLLDSMWHWGEHIESEPVEYYIMFKYGPY" tRNA complement(529847..529920) /gene="CBG28583" /locus_tag="CBG_28583" /standard_name="CBG28583" /product="RNA transcript CBG28583" /note="C. briggsae predicted tRNA" CDS join(531041..531112,531708..531854,531956..532264, 532310..532357) /gene="CBG05336" /locus_tag="CBG_05336" /standard_name="CBG05336" /product="Protein CBG05336" /note="contains similarity to Pfam domain PF00406 Adenylate kinase contains similarity to Interpro domains IPR000850 (Adenylate kinase), IPR006266 (UMP-CMP kinase)" /note="Predicted" /db_xref="GOA:A8WZM1" /db_xref="InterPro:IPR000850" /db_xref="InterPro:IPR006266" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR033690" /db_xref="UniProtKB/TrEMBL:A8WZM1" /protein_id="CAP25831.1" /translation="MFNVVFVLGPPGSGKGTICSKIQENLGYVHLSAGDLLRAERERA GSQFGALIESHIKNGSIVPVEITCSLLENAMNLHKTANGFLVDGFPRNADNLSGWSKQ MSGKVHEQFVLFLSCPVDICINRCLNRGEGRTDDNVDSLKKRVETYNNQTFPIIEHFG KLNMVRKVDSERPVEEVYEDVVKVFEAANQM" CDS complement(join(533029..533519,533567..533726, 533772..534001,534047..534176,534947..535066, 535112..535207)) /gene="CBG05337" /locus_tag="CBG_05337" /standard_name="CBG05337" /product="Protein CBG05337" /note="contains similarity to Pfam domains PF02958 (Ecdysteroid kinase) , PF07914 (Protein of unknown function (DUF1679)) , PF01636 (Phosphotransferase enzyme family) contains similarity to Interpro domains IPR012877 (Uncharacterised kinase D1044.1), IPR004119 (Protein of unknown function DUF227), IPR015897 (CHK kinase-like), IPR002575 (Aminoglycoside phosphotransferase)" /note="Predicted" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR012877" /db_xref="InterPro:IPR015897" /db_xref="UniProtKB/TrEMBL:A8WZM2" /protein_id="CAP25832.2" /translation="MSELIIEGVPLTKEWLANVVEKKLGVRPKIGTSGILDNSELGYM SMIRKVELHFDAEQEESQQNLPKHVVLKIACSAKGSGVIENAGGEVDSKNSAAVEQFM HNTECNYYRIFGKLTDKPLKVPTIYSASKAGDEDAPVPVIVMEMFEDCKVYDLIEGFN EQQLYKIVDQLIMLHIFSLTTEDWKEIKPDAIMLEMGAVFQTMVKNIADNLAKQPGLE AIATYVKNTFEKDARFIEKLGEEYLEEKRVSVLTHGDLWAPQILWDKEDNIAGIIDWQ ITHRGSPMEDLHHVLSTCTSVENRKKLTEPLLDYYFDKLSAGLEAKGVKMPWTREDIE VGLLFGTSLLKLRLQEEFKHNYIHGAALTIFANGFWSNSPVLQTDGKPDLGRIAESFA RCKSYIEETVQVHNMS" CDS join(537566..537618,537668..537803,540016..540270, 540323..540408,540459..540558,540604..540774, 540818..540939,541226..541369,541415..541643) /gene="CBG05338" /locus_tag="CBG_05338" /standard_name="CBG05338" /product="Protein CBG05338" /note="contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR017972 (Cytochrome P450, conserved site), IPR002401 (Cytochrome P450, E-class, group I), IPR002402 (Cytochrome P450, E-class, group II)" /note="Predicted" /db_xref="GOA:A8WZM3" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR017972" /db_xref="InterPro:IPR036396" /db_xref="UniProtKB/TrEMBL:A8WZM3" /protein_id="CAP25833.1" /translation="MVVSFTIFIVTLFVAVFLYFRKKHKYWSDRGINGPQGLPLLGSF YDVSDANKPRCFVLNEWTKLYGETFGYYEGTVPVLVTSNLEILHEVFIQKFDYFYARK LTNMLHGDMESLQEEPRVNLFTARGPRWQKLRALTTPGFSVASLKRLHGKIEESVLRM VELLGEHENDGPFNIHCFFQEFTYDVISRLAMGQQGVKQFENDGIDVVKKILLKTHRV LPWYLASIFPQFEFKVKQLFYNHENVRGGKIAELFMYCAKSVMERMKQREKQAAQGEE IQQNDFIDLFLDHYSEIEQSYNESGKTIKQACACSRECVKQTTLGPHLIDEGVRIEAD VKAIHYSKEIWGDGTELFVPERWFDEQRHPLASLAFGAGKRKCVGMRLGMSEAKMALA HVLRKWSIVAGPETEDQLHFQGCTTTSPEKVTVHLKARF" CDS 538184..538336 /gene="CBG05339" /locus_tag="CBG_05339" /standard_name="CBG05339" /product="Protein CBG05339" /note="Predicted" /db_xref="GOA:A8WZM4" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR025898" /db_xref="UniProtKB/TrEMBL:A8WZM4" /protein_id="CAP25834.1" /translation="MARATLLSLAEQAKVDVMKQLELTLHEMSRQLTRSRNVIRKYLA DPLHYD" CDS join(546045..546091,546133..546268,546320..546574, 546622..546707,546755..546854,546900..547070, 547526..547890,547942..548085,548134..548368) /gene="Cbr-cyp-13B2" /locus_tag="CBG_05342" /standard_name="CBG05342" /product="Protein CBR-CYP-13B2" /note="C. briggsae CBR-CYP-13B2 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR017972 (Cytochrome P450, conserved site), IPR002401 (Cytochrome P450, E-class, group I), IPR002402 (Cytochrome P450, E-class, group II), IPR002403 (Cytochrome P450, E-class, group IV)" /note="Predicted" /db_xref="GOA:A8WZM5" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR017972" /db_xref="InterPro:IPR036396" /db_xref="UniProtKB/TrEMBL:A8WZM5" /protein_id="CAP25835.1" /translation="MGLLVCFVAVFAVIASYFKWIHTYWKRRGVDGPVGLPFIGSFYD LADKDKPRGYILHEWTKKFGSIFGYYEGATPVLVVSDVYVLQEIFIKKFDCFYARKNT NRIHGDLECSQEEPRVNLFAARGARWKRLRSLASPAFSVRALKQVHNTMENSVLCMID HMAKHENSAAFNIHEYYQEFTYDVISRLAMGQAYSEQFNNEGVNIVKKIFMRSNRTLP WYLAVLFPRFQNTVKNFFFKHESIRGGDVALLYKFCEKAVYDRIKERSANAEQEIEND QNDFIDMFLDYYTEAEIEDAEFGTTVEKKVTSEDVIGSCFVFLLAGFDTTANALAYAS YLLAKNPEKMHKAQQEIDEICTSENISYDDIAKLNYLDAIIKEALRIYPVAWFACSRE CVKTTTLGGLVIDKGVRIEADVTALHHSKEIWGENAEQFVPERWLESSAPRHTMSWIP FGAGPRQCVGMRLGMSEAKTALAHVLRKWSIVAGPETEEQLRIQGCTTTSPESVTVYL EARF" CDS join(550138..550143,550408..550638) /gene="CBG05343" /locus_tag="CBG_05343" /standard_name="CBG05343" /product="Protein CBG05343" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZM6" /protein_id="CAP25836.1" /translation="MKKFLFEDVKSVPYMEFLISDMDIANFKPDTVLMIAKKFMEING MQRPIPLESPGIVRVDSDSDGSELAPRAPEAQLP" assembly_gap 551094..551386 /estimated_length=293 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 553103..554102 /estimated_length=1000 /gap_type="between scaffolds" CDS join(554174..554186,554429..554531,554579..555157, 555204..555379,555428..555907,555959..556293) /gene="CBG05344" /locus_tag="CBG_05344" /standard_name="CBG05344" /product="Protein CBG05344" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZM7" /protein_id="CAP25837.2" /translation="MRNDTTLSEDLVNSPASAKASRSVSADAISIPEKEEAKKARDQS IPLETAPATASWKSSKTNEEVIGIPATVTFPIVGSAPPVANKTHAFTEAFAVSKGSAA PKATVVTKFSVKDNTTTVSNVSIIAEDCAADKAPALIQKTAASDTLTKTTVSVPAKNA QMSTVEKSLVQEKAVPIAHSSAPSGESVAAKTKASVQASSSVISTVMVKAPATTEAPV STNEGALPSKATRKNKNKNKKSKNEPKDDFSAELPNKADKKLEEVKLNFSTKFEVYKK KMDNERRFQLAFEKENFQSHDLQMKIYECLKQTHPFDIHLRRKEIEEKLKERIIHYRN SKCFEYQIMEYVMETLSNCKMDLITGDCLYLYSDTSLSEKKLRALEQQYLRMVESCKD WIGNSERECVLTMEELKMNPVKLCDESWYDHFVTYMNRQALLRNNDRPSNIPEIKIEE LISQMYDEECFVYKLFSDFQGPVEWDPLTTKIFIKMRLNNLDNLSTISVEEREQFKEF YTFLLATKSSIVDFDIFQMFGRVSTQDLSKFKTEPYVENSLFILFFNYPHPQV" CDS complement(join(557948..557962,558007..558213, 558260..558430,558615..558705,558751..558839, 558940..559266,559317..559478,559526..559604, 559891..559991)) /gene="CBG05345" /locus_tag="CBG_05345" /standard_name="CBG05345" /product="Protein CBG05345" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZM8" /protein_id="CAP25838.2" /translation="MSDPTYVLAYVSEKREDGFLLCLQDTEATAVISNHPALNHSRLG HLVGCKLVEGKLIDITDNNYTSSHVARKNSLSETMRLFQFYPESTEEMQGCVIAKCVL SGWTTKVFIGPKMLRKVKKLPSSIEVVGWCQFRKGMVYMRLLEEEYHGPEVCQLHRWS LVELGKPAVQWFMENIGTVFQWGRRLLNERSLGQNDVCTMEEIMSMVDDMKPIRKVGP WALDQEAATGDGVFICRDRGQAVFYLSSNKCGIICVDEVRELKKGDMVNVNMMSPITF RPFATITRINHHLNTRWETRMFRGETLFHLDVKFLRRFSCFDGHKGFLVFESPNVQDY VFVKDTVLISGMPNCTHTLLYAIEHGKLGRYTSCWCRYAMNEVPEMLINKELYTERLV HAYAWQIVYIVAPPKDLDNSA" CDS join(564735..564926,564971..564985) /gene="CBG05346" /locus_tag="CBG_05346" /standard_name="CBG05346" /product="Protein CBG05346" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZM9" /protein_id="CAP25839.2" /translation="MPNCTHTLLYAIEHGKLGRYTSCWCRYAMNEVPEMLINKELYTE RLVHAYAWQIVYIVAPPKDLDNSA" assembly_gap 565071..565715 /estimated_length=645 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(566599..566933,566985..567438)) /gene="CBG05347" /locus_tag="CBG_05347" /standard_name="CBG05347" /product="Protein CBG05347" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WZN0" /protein_id="CAP25840.2" /translation="MKIYECLKQTHPFDIHLRRKEIEEKLKERIIHYRNSKCFEYQIM EYVMETLSNCKMDLITGDCLYLYSDTSLSEKKLRALEQQYLRMVESCKDWIGNSEREC VLTMEELKMNPVKLCDESWYDHFVTYMNRQALLRNNDRPSNIPEIKIEELISQMYDEE CFVYKLFSDFQGPVEWDPLTTKIFIKMRLNNLDNLSTISVEEREQFKEFYTFLLATKS SIVDFDIFQMFGRVSTQDLSKFKTEPYVENSLFILFFNYPHPQV" CONTIG join(complement(CAAC03001247.1:1..62726),gap(4413),complement (CAAC03001246.1:1..124139),gap(228),complement (CAAC03001245.1:1..33296),gap(141),complement (CAAC03001244.1:294..32640),complement(AC084650.1:3476..12505), complement(CAAC03001243.1:1..16028),gap(616),complement (CAAC03001242.1:1..17685),gap(10),complement (CAAC03001241.1:1..23550),gap(1028),complement (CAAC03001240.1:1..20460),gap(759),complement (CAAC03001239.1:1..6244),gap(742),complement (CAAC03001238.1:1..22151),gap(10),complement (CAAC03001237.1:1..44584),gap(999),complement (CAAC03001236.1:1..12616),gap(458),complement (CAAC03001235.1:1..11183),gap(19331),complement (CAAC03001234.1:1..18653),gap(238),complement (CAAC03001233.1:1..39697),gap(3879),complement (CAAC03001232.1:1..23852),gap(293),complement (CAAC03001231.1:1..1716),gap(1000),complement (CAAC03004835.1:1..10968),gap(645),complement (CAAC03004834.1:1..1799)) //