LOCUS HE600985 284787 bp DNA linear CON 17-SEP-2015 DEFINITION Caenorhabditis briggsae AF16 supercontig from assembly CB4, cb25.fpc2501a. ACCESSION HE600985 CAAC03000000 CAAC02000501 VERSION HE600985.1 DBLINK BioProject:PRJNA10731 BioSample:SAMEA3138181 KEYWORDS . SOURCE Caenorhabditis briggsae ORGANISM Caenorhabditis briggsae Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 284787) AUTHORS Howe K.L. CONSRTM WormBase Consortium JOURNAL Submitted (03-OCT-2011) to the INSDC. WormBase group, European Bioinformatics Institute, Cambridge, CB10 1SA, UNITED KINGDOM. REFERENCE 2 (bases 1 to 284787) AUTHORS Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K., Durbin R., Waterston R.H. TITLE The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics JOURNAL PLoS Biol. 1(2), E45-E45(2003). PUBMED 14624247 REFERENCE 3 (bases 1 to 284787) AUTHORS Ross J.A., Koboldt D.C., Staisch J.E., Chamberlin H.M., Gupta B.P., Miller R.D., Baird S.E., Haag E.S. TITLE Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination JOURNAL PloS Genet. 7(7), E1002174-E1002174(2011). COMMENT Details of C.briggsae assembly version CB4: To improve upon the C. briggsae nuclear genome assembly CB3, 167 AF16/HK104 advanced-intercross recombinant inbred lines were successfully genotyped at 1,032 single nucleotide polymorphism (SNP) markers. The resulting data were used to estimate high-density genetic maps. Sequences were assembled by combining the physical and genetic positions of the SNPs to inform the process of ordering and orienting the cb25 supercontigs into chromosome assemblies. 37 of the cb25 fingerprint contigs were split into 100 supercontigs to resolve discrepancies between the physical and genetic orders of SNPs. 638 sequence supercontigs comprise the CB4 assembly. The total nuclear genome content decreased from cb25 to cb4 because of the removal of three supercontigs containing mitochondrial genome sequence (totaling 20.1 kbp). Assembly_name: CB4 Assembly_program: Phusion Seq_technoloy: capillary (whole-genome-shotgun) Seq_coverage: 10x Annotation details: Coding seqences below are the result of integration and manual review of the following data : computer analysis using the programs Genefinder (version 980506; P. Green, unpublished data), FGENESH (Salamov and Solovyev 2000), TWINSCAN (Korf et al. 2001), and the Ensembl annotation pipeline (Clamp et al. 2003); similarity to other proteins from BlastX analyses (http://blast.wustl.edu); sequence conservation with C. elegans using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000); individual C. briggsae GenBank submissions; and personal communications with C. briggsae researchers. tRNAs are predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964). FEATURES Location/Qualifiers source 1..284787 /organism="Caenorhabditis briggsae" /strain="AF16" /mol_type="genomic DNA" /note="supercontig cb25.fpc2501a" /db_xref="taxon:6238" CDS join(<113..152,236..906,963..1166) /codon_start=1 /gene="Cbr-uda-1" /locus_tag="CBG_11542" /standard_name="CBG11542" /product="Protein CBR-UDA-1" /note="C. briggsae CBR-UDA-1 protein; contains similarity to Pfam domain PF01150 GDA1/CD39 (nucleoside phosphatase) family contains similarity to Interpro domains IPR000407 (Nucleoside phosphatase GDA1/CD39), IPR002034 (Alpha-isopropylmalate/homocitrate synthase, conserved site)" /note="Predicted" /db_xref="GOA:A8XDG1" /db_xref="InterPro:IPR000407" /db_xref="UniProtKB/TrEMBL:A8XDG1" /protein_id="CAP30680.1" /translation="LAAELQTPENDLKYEPTIGNKPAAHRSVAAFDLGGGSTQLTYWP NNEAVFSEHVGYERDIDFFGHHIRLFTHSFLGNGLIAARLNILQLETENDIETTHQLI TSCMPEGFQLTEWEYALKFWNINGSSSYSYDTCYDVTKRFVESSEIMHLRELKGAPVY LFSYFFDRGLNSGLVKGNDGGQIELRQFKEAAKTACQRGKLEINDGSHWMPWQCLDLT YIYSLLRDGYQFEDNQPIVLAKKIKGMEVSWGQGLAFATANEFQLTEGAIKTASSSEQ NATVVDQIVDLVYSGTNQVLSYFNIISV" assembly_gap 1734..2908 /estimated_length=1175 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(4256..4261,4306..4482,4735..4935) /gene="CBG27211" /locus_tag="CBG_27211" /standard_name="CBG27211" /product="Protein CBG27211" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IIA4" /protein_id="CAR99634.1" /translation="MEKIEKSRGVNQGAKFPSIGGQSSKDALNLEVGLENPPEDIITS DDQEEDPFEIEVRLMLDLATVRLQISANEEFEIPRADEQDVVIESAEHSTELLSVCYL NFLYQNRYLFQDCLEPSPDSEEEGE" CDS complement(join(5432..5605,5655..5840,5883..6246, 6323..6591,6643..6837,6881..7000,7239..7286,7331..7511, 8133..8221,8265..8468,8663..8850,8900..9042,9104..9152, 9194..9317,9757..10071)) /gene="CBG11544" /locus_tag="CBG_11544" /standard_name="CBG11544" /product="Protein CBG11544" /note="contains similarity to Pfam domain PF05218 Protein of unknown function (DUF713) contains similarity to Interpro domain IPR007883 (Protein of unknown function DUF713)" /note="Predicted" /db_xref="GOA:A8XDG2" /db_xref="InterPro:IPR002109" /db_xref="InterPro:IPR007883" /db_xref="InterPro:IPR036249" /db_xref="UniProtKB/TrEMBL:A8XDG2" /protein_id="CAP30681.2" /translation="MFLGVCKKLFCCCSRCCNCCGENVSGDRDGLIKNGEEMQDCSTS NRNESGHDESERNASGNKEVYDLNKKIEEKQNRSKRSSKMRIRLSRQKWKKSGGTENF WMYCMGSKNSVPAKPSIVTECEKALGEILQQKDNTELTSCNLTEEKTADQEQIEEFEA HLQRLRKMGSRLSVYYGSDVPDFTDDKTVLNNLKLMNLTANLTGNRGKSEEQHIETKQ NPGVGQEGASGNKEVYDLNKKIEERQKPFEEEQQNENKAFETEMEEKRRNRELLDKEN DIRMRPSGPRRAKVERIVRENPIVLFVLSYAHKENDFILTVFNKMKRDFKAIYVEEDD QIRLGVKEYTDKERFPLLFINGQLQDINDFKQGTSNKGLEKWCKEKQHSLNVIDNSLK KITIPRSNREKEQTCEFICKSFWTLFTINWESTQLNPDSIEGKFLLKLKASYKSNQWD QFYASYEEYFDSLIHSMRTQKKLDIRIQDLDGSLWKTFHDCKMSSNEISRLKTDMELM ESGIDSWECDPKGRNHSGDNKTSLFCCLKSKILESTKNKPKKIVNTQPTYQNSPGANS SSRRNMKSKKLPDEIRVASGGQARMNGEFQNEIQNYESQLNSIVSSPLDSRNSKSTQI RKEPLPKAGNVETPGIHRTPSQASNNSLHWENRRNQMDLSFQRKLNEQNEKFAEELRK IRENRERLNREAEEDMRQFRKESAIRIQMFLNCIQLRIRWEEQEHEWGDWLKRVRATV VKVKTTLLEFEFDRRRNDEDDNKSEAIYLQSCVRNAYEKMRCEFGNLVLLSDRYENKL FLKVIQKRISNVATKLCILAEELEEFQNDPSLFSRLHNISSQIDPIEIPTTSELRKIC ENASPSDYNVISPPRQPKSYCVITEI" CDS join(12342..12524,12574..12627,12719..12766,12810..12929, 12973..13047,13098..13186,13569..13868,13945..14308, 14361..14546,14590..14781) /gene="CBG11545" /locus_tag="CBG_11545" /standard_name="CBG11545" /product="Protein CBG11545" /note="contains similarity to Pfam domain PF05218 Protein of unknown function (DUF713) contains similarity to Interpro domain IPR007883 (Protein of unknown function DUF713)" /note="Predicted" /db_xref="InterPro:IPR007883" /db_xref="UniProtKB/TrEMBL:A8XDG3" /protein_id="CAP30682.2" /translation="MKNWYQNNEKTLAKISECLETIEVPKTDKKEEEISKLIKNSFLL LFRSFWEPGVFQLKKRSKLKTLGRRLNPKQDIRKIEIEEFKRKFMKSVESKKWSNFYS SYSSYFDNVIRLARNQEKLDIVVETENKNQYNTLTDAKAHTHQVNLAKEGNMKDQKKK KSKLASQPLTLREYDLLESPKIERDVPVKRSSSEASSASLSFSAKINERNEEFQRELN AQNEKFAEELRKMREKRERLNREAEEDMRQFKKSQLNSIVSSPLDSRNSKSTQIRKEP LPKAGNVETPGIHRTPSQASNNSLHWENRRNQMDLSFQRKLNEQNEEFAEELRKMREK RERLNREAEEDMRKFRKESAMRIQMFLNCIQLRIRWEEQEQEWGDWLKSLRTPVARVK TILLEFEYQRRHNDEEENKSDIMYLQKSIQIAYEKLTYEFENLVNLSYRYEDKLFLKV IQYFISHLATKLCVTMEELDEYEPNEEFFNKINEMSKNIDAMDIPTTSKLRLICSNAS PDDYEHIDPPKVPNYACVITEVSFEKGI" CDS complement(join(15322..15479,15527..15813,17057..17196, 17840..18124,18171..18293)) /gene="CBG11546" /locus_tag="CBG_11546" /standard_name="CBG11546" /product="Protein CBG11546" /note="Predicted" /db_xref="GOA:A8XDG4" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR036116" /db_xref="UniProtKB/TrEMBL:A8XDG4" /protein_id="CAP30683.1" /translation="MAARSYRLDSNGPEKRIYRSILDSTSCPRSSGHHFVITQHLVKV YDLSGNMSTNKRSISVPIPLTRLQIDGLKPATAYNVTVQAGTSYGYGNKVWCAYATLD TDEANILKLRARTPNSLTVYWPANWLTKATSKFTIKAKTIHSPTGIFKEIENSAIGEP GKAHEFVVDNLLPSSTYNITITTIGDGKVYGGYVNYPLRSEKDPRWTLIPVTQSENEM IEPHLKTCGFNEQGSFNCDMTLSEVLTHIPIVLVSAGFLILILVIFFICLAIFCFLRN SCQEKPGVEESALMYYRSDSPNTISTCREYRKIERREFNASDMEERMRFRDHEN" assembly_gap 16432..16441 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(19641..19988,20065..20271,20843..21043,21087..21173, 21218..21449,21499..21561,21605..21907,21956..22611, 22656..22841,22882..23104,23149..23231) /gene="CBG11547" /locus_tag="CBG_11547" /standard_name="CBG11547" /product="Protein CBG11547" /note="contains similarity to Pfam domain PF05218 Protein of unknown function (DUF713) contains similarity to Interpro domain IPR007883 (Protein of unknown function DUF713)" /note="Predicted" /db_xref="InterPro:IPR007883" /db_xref="UniProtKB/TrEMBL:A8XDG5" /protein_id="CAP30684.2" /translation="MRLKNSIPENKKTTSSTTQKLGATPEVASSSLAEGEFLIYPTKI IQMKNSENSNTLLKNSDELEGASAVNTDDSEIEFDYKKIEERKNAFEAEMEAENAIHR ADMETIRRNRELLDEENSIRMNPSEPRIVEVEGIIQENQNILFTRRDAEEDNLSISSS LLMNINNEFKTVFVEDDAVIRLGAQRKPLIRNKLKNSKHIFSEISFFKNMNRTSQFQK DCRRRLRKMGSRLSVYYGTDVPDFTDDIVYFKCPNISGVDEEDRNNFYNELCESVNAT RDDFEKDVQLIERKLFSCLHALSHMSFEYKSLIEIIQKESLKILNSGNVVPDWKTTFM KTVLNNLKQMNLTANVTGNRGKSEEQHIETKQNPGVGQEGSDEQDSGYHVYVDGKTGT ERVEVAEENKTLVEVISNGRIELDQSETENQKDNEIDDEEEKIGTENVEEEKAEENKT TIVDQENGPIEMGVELTEESNIEPEKSNKKEKTDTRMDDVEADEENVDPHLAHSDQQE PEEFEEFNKLLASKIEKGKVEEELKQKETQSEINDRMEMLKSENDKILIAKEEYEKAM KDFQALVEKRNNEFLEAEKAKQEIHEEEMKRIRQTRKEFEVNFMGFFKLTILWFDFQE ETERIRLKDLREIRAMMFAFSECIRLKLNWEIKEDEWGSLLKRLKASVSRTKNQFIRF LDSMKSLGDFDAEDTKKEELSNLHSQTFSTYDTLYEAYLFIKMLSTEFQDRKFLVVLQ KRLSDVCQCILSALLEIDNAMTNQNYLESLKEKFSKFDSSDIFYTSKLREMEKNFVEE TYQNIVDPEKYIPKSEVVIDQMSDSNEAQPGNVEEAPDHPNHEIGEGKRQTPEDLDTE NTQPCY" CDS join(23435..23497,24037..24282,24326..24442,24494..24738, 24785..24952,25070..25238,25286..25543,25593..25715, 25765..25998) /gene="CBG11549" /locus_tag="CBG_11549" /standard_name="CBG11549" /product="Protein CBG11549" /note="contains similarity to Pfam domain PF05218 Protein of unknown function (DUF713) contains similarity to Interpro domain IPR007883 (Protein of unknown function DUF713)" /note="Predicted" /db_xref="InterPro:IPR007883" /db_xref="UniProtKB/TrEMBL:A8XDG7" /protein_id="CAP30686.2" /translation="MDWVVEVPRELIQELRNPNRKRPIKTILRENWGLVEKIDTNLKN GKELPETLPLLVVHLMQNFMTVVSFLVNPRKLSTRKRRSSNETPDEIWNFENDLREAQ KDWKTFFYKYEKEFLILARKSKVSAGVNFHEELWRRSRLQKLTSFVFQIGEKVQNKTV SIIPPSRFLFAFVGFLASWTIVPVFNTPKKLGEATSNLLKPSEKITQNGYKNGKQNGK ENGSTKSSAESKISKLIFTPTESHEKMKQFQAGMKNSDKFIGEREQEWQEKLNMYQKE ISARLEVQEKRLFAEIEKFQEEKNARRQQEEEEFTKRMNQQDIEFHKIIKKIDTDRKK FSHDEQRDLLETCKEQDIALLRLLDMSLAPLNVSRSWEDHEDYWSSRLQILRNALASV RSEFWNFERYFRQHSENPEKTPNFVKTIYEMESASFGQTVTRAQTLINNQHEFFDVLF DKYDDDLFLKVLWKITSDVSSQLDRIILEMWSIAVNSSDFDHFRLRSAVLEIDPSSIP TTWRLKGICHSADPSDYEDALSNGSPSVHSHF" CDS join(30966..31060,31103..31215,33627..33793,33839..34069, 34114..34524,36105..36176,36475..36609,36655..36940, 36990..37232,38057..38229,38328..38576,38626..38787, 38843..39061) /gene="CBG11551" /locus_tag="CBG_11551" /standard_name="CBG11551" /product="Protein CBG11551" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XDG8" /protein_id="CAP30687.2" /translation="MSYYFEYLRKKLSEEGDEQRRREYEQSMERLRNFKEGSRESHQK ELEMMEEDKQKSLKEIRKRTEEKLTALQAETKNEEKKFDELSAKLIEEAEKEVISKRK IYDEIIAKNMKLLEADQLKVEQVELLETDSNLRKLQMDITETISSEAEKTEMKKQRLM EEQKKRDEERLVIRLEKDNENLESELKVMKEVQKKNEEVQDKELQYTQDIGKSHLIAQ RENFTTMELRNRKYNNGVMNDFLEKLSNLSENVKRSYARCSIYLQNDGVLSGQLARKA RESFEGFLAEFHTTAEELITIERRLAEVDKKEIPPDMVKNIQEMRDVLFQLSNNVSKF CGRLMIGQSLKNETDEGELQKLMDRFSKIKSNSKMGGWLSSEEKKIEEEHRQRMEKDS EQRQRDEEQKKKEIEDKRKKELAEEQASIDVELNAEKQERLERTAEEVKNFNEMKKKM QKKIDDLQRELKEQTRKIVDEQKTSGMNLVTDGKNKLKEDKELLVKKNEFMMSENERL TEARRQEIEKRKEMVQSKEQLEMDRSDKHFEDLKKLNTEKNNVVRDGENKMTQLSENL RTVQKGIKQQEEDFLKVQMGNAYDLLAIHHEEQQFDDFRRKGMRRVNLSSRIRSDFDK EEVSINTTREDIERGVPLSRQPDFFDVSLSIRNLMTEMSSFELQGAGEMDKYETIRKE IISLLEKLTTALNEMESRIERYTSQGPTHSNEQRNDKRQEFNTDSDSDDTDITSEIPT PPASVRNEPKSSDRRNFSITEQYNEVKTVMRSLNDAILKLNVPASTEFEDTLTRQIEG LTISHSQIVGQITSGVVPSTSDEPRRITDTPSTSSSQPAIEEVEKSEDESGST" assembly_gap 31784..32710 /estimated_length=927 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(39606..40153,41144..41261,41385..41711)) /gene="CBG11552" /locus_tag="CBG_11552" /standard_name="CBG11552" /product="Protein CBG11552" /note="Predicted" /db_xref="GOA:A8XDG9" /db_xref="UniProtKB/TrEMBL:A8XDG9" /protein_id="CAP30688.1" /translation="MIGNLTAKLLKMAENQLRNTFLCILLTDTEKISIQEITRHTDVG KRLESIKRVQNGIILRKNTFQRFTVMKSLQYLAIHPNHGPLLKLEHNYYLTSLEFRDL RVLNGSMASPKTQIHRFQQFLDFLAAAGHSIDPCSPDYFDLHFMEENFPSNHWYFVIA GSLGALAVVMIIDTIWFTGFQTSWEKKKLFELELGREKIRFEKSMKQYEQDEKWKKEA QEIKDGDKEYMDLLNLHNQDPFHAEGELIKWAEEKKLEQEKELRKNKYIEEREKREKA KEEKIIRQLSATRKKEQRRREKEEALKKENEKKKKNKNEISEKEMREIKKAIPK" CDS join(42540..42615,42666..43194,43253..43380,43443..43699) /gene="Cbr-sfxn-1.3" /locus_tag="CBG_11553" /standard_name="CBG11553" /product="Protein CBR-SFXN-1.3" /note="C. briggsae CBR-SFXN-1.3 protein; contains similarity to Interpro domain IPR004686 (Tricarboxylate/iron carrier)" /note="Predicted" /db_xref="GOA:A8XDH0" /db_xref="InterPro:IPR004686" /db_xref="UniProtKB/TrEMBL:A8XDH0" /protein_id="CAP30689.1" /translation="MSDLVINQKVLPDISKSKWDQNTYSGRVKHYFASANPMTLFTSS ATQEKCRKIVLDYKKGVISPDLTMDQLWRAKILYDSMYHPDTGEKMFCLGRMSAQMPA NMVITGLLLSFYRTCPGVIFSHWINQSFNAIVNYTNRSGNSKTTNQQLFYSYCFATGA ATTAALGLNMMVKNSHGLAARLVPFVAVAAANAINIPMVRANELIDGIELCDENDQLV GKSRQLAALSIAQVTLSRIAMAMPDMVLSPVIMNRFTRTAYYKARPLIQKYSEMPIQT FLTGIGLYFTTPLGCALFPQKSAIEVSKLEASVQKDILARDHAPKVVFYNKGL" CDS complement(join(44157..44339,44411..44635,44683..44946, 45142..45270)) /gene="CBG11554" /locus_tag="CBG_11554" /standard_name="CBG11554" /product="Protein CBG11554" /note="contains similarity to Pfam domain PF00595 PDZ domain (Also known as DHR or GLGF) contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)" /note="Predicted" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR036034" /db_xref="InterPro:IPR040264" /db_xref="InterPro:IPR041489" /db_xref="UniProtKB/TrEMBL:A8XDH1" /protein_id="CAP30690.1" /translation="MTSEKMIEVRVDMEEGEPLGATPNDKLVITKVQPGTIAEGKLRI GDQVKEVNGVKCKDCNDFFRALRFAAPCAKIIVNRDDKKAEELEARVHIPADRAKIIQ RREGYVYELATLVWVQNGPKLGLGINHFQNRVLVSRVDPGTLAEKCLVLGDHLCDVDG VPVTDKDVARDLLVKNLQEKGKVTFVVERPESIDAKQWAKQALATNMNDDVRNIAAQY RQALPGLKTPSKSAMSTGRSARQVQIVEQTQTHEIGHDHEGKALRKVK" CDS complement(join(45634..45802,45855..46015,46062..46286, 46334..46534,46808..46839,47004..47181,47226..47417, 47461..47527,47579..47716,47762..48129)) /gene="Cbr-str-38" /locus_tag="CBG_11555" /standard_name="CBG11555" /product="Protein CBR-STR-38" /note="C. briggsae CBR-STR-38 protein; contains similarity to Pfam domains PF10319 (Serpentine type 7TM GPCR chemoreceptor Srj) , PF10318 (Serpentine type 7TM GPCR chemoreceptor Srh) , PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd) , PF10326 (Serpentine type 7TM GPCR chemoreceptor Str) contains similarity to Interpro domains IPR019423 (7TM GPCR, serpentine receptor class j (Srj)), IPR019422 (7TM GPCR, serpentine receptor class h (Srh)), IPR019421 (7TM GPCR, serpentine receptor class d (Srd)), IPR019428 (7TM GPCR, serpentine receptor class r (Str))" /note="Predicted" /db_xref="GOA:A8XDH2" /db_xref="InterPro:IPR019428" /db_xref="InterPro:IPR032675" /db_xref="UniProtKB/TrEMBL:A8XDH2" /protein_id="CAP30691.1" /translation="MSNVTVLPFIAEIFSRVGFVCTCLFNAILIYLTAFKTERITGAY KYLIILFSLICISFSCLEVLAHPYLHNYNGGFIYFSLNDYLGASNELLKFFIEAYSGA YASIMCMVAVQFVFRFATLMNRKTLLSSFSGFNFVIWILYPLFFCITFGMMVHYCAQP EPFSDDYMKKELFRVYNLEIEKTARFIVIAYNANGSVRWFNLVFLFGAMIILGFQYAV IIFCGIQMQRKMKKELKNFSLPNRKLQQQFFKALVVQITLPTVLFHLPALPVLFSPFF DVKFTFQTGFIYAVFSLYPPIETVAFMLIVSEYSNIFKKSINRRPSAPDKRKISETEE SEENMKKKKHPKLKRKWQAEEEFLGLQLLPSNVMRTIVEKMSVEEHANFRKVCYYAHD EVESYWRSQRSISISQLMIWFPKLSESKWKLTSLSGILDELSAVFYLFKPGNLRKLSL CRVASINMNSLVKCIELSTGMSASKFLENVEELDLRGCFLSREHIKMIDELFPNLKAL ILHQNAIMPERNIKLPYKKQNEITHYVKMSSDPKHVEYGNVPEADKNVVAFLSQNLPD VRHIYIDLDA" CDS complement(join(48327..48329,49242..49382,49777..50337)) /gene="Cbr-str-45" /locus_tag="CBG_11556" /standard_name="CBG11556" /product="Protein CBR-STR-45" /note="C. briggsae CBR-STR-45 protein ;" /note="Predicted" /db_xref="GOA:A8XDH3" /db_xref="InterPro:IPR019428" /db_xref="UniProtKB/TrEMBL:A8XDH3" /protein_id="CAP30692.2" /translation="MIELHEISYMFTKCGFGAAFVVNLFLIFLTAFHVQRIFSTYKYM VIVFASMGIIFSGWEIVARPFAHNYNKGFLYFSLSAAFDYSQDFLQFAIVAYGSFYLV ILAFIVVQFIYRYVTIFKPTLITKFTGKGVLVWMMYPLLAGAAFGGPLYCFGLVDSYS DEYLKNEILEKYGLAIKDLPRFAIVTYDSEGNLRWRNCCYLLTSITVMGSQYMIIIFC GLRMHFTMKKELKTFS" CDS complement(join(54025..54351,54435..54992,55160..55225, 55228..55362)) /gene="Cbr-str-9" /locus_tag="CBG_11557" /standard_name="CBG11557" /product="Protein CBR-STR-9" /note="C. briggsae CBR-STR-9 protein; contains similarity to Pfam domains PF10319 (Serpentine type 7TM GPCR chemoreceptor Srj) , PF10327 (Serpentine type 7TM GPCR chemoreceptor Sri) , PF10318 (Serpentine type 7TM GPCR chemoreceptor Srh) , PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd) , PF10326 (Serpentine type 7TM GPCR chemoreceptor Str) contains similarity to Interpro domains IPR019423 (7TM GPCR, serpentine receptor class j (Srj)), IPR019429 (7TM GPCR, serpentine chemoreceptor class i (Sri)), IPR019422 (7TM GPCR, serpentine receptor class h (Srh)), IPR019421 (7TM GPCR, serpentine receptor class d (Srd)), IPR019428 (7TM GPCR, serpentine receptor class r (Str))" /note="Predicted" /db_xref="GOA:A8XDH4" /db_xref="InterPro:IPR019428" /db_xref="UniProtKB/TrEMBL:A8XDH4" /protein_id="CAP30693.2" /translation="MGAAYLPYIQFSIFMGNLGFFSNAFFGFILVYLTLFYIKRQFGS YYLLVNFQVLGFVFASFEFLFHTFLHTYNASLTYFSLSRPLGFSNFTMEWMMGIYTGL YSATICMLAIQFMYRYWAIFDTPKLCYFQGWYYFIWVGYYTFFGVLWAFAVGNFFAMD DFGRKYLEDEILLRYERNITEIPVLGLIAYEGDNIRWRNVYGLSLMTLISTVQYSIII ICGHQMYSGMRTKIAVLSAQHRRLHRQFFRALVIQISAPTIILFCPVFFMIYAPFADL EMSFPSCIIQSGFTVYPALDSVIMMSCVSEYGRALKSKKNEQFDYFEKKTSELIVNAK ERYTVKATKEESRETAQTHGKAVTTKL" CDS complement(join(58139..58438,58670..59063,59123..59289, 59336..59533)) /gene="Cbr-str-6" /locus_tag="CBG_11558" /standard_name="CBG11558" /product="Protein CBR-STR-6" /note="C. briggsae CBR-STR-6 protein; contains similarity to Pfam domains PF10319 (Serpentine type 7TM GPCR chemoreceptor Srj) , PF10318 (Serpentine type 7TM GPCR chemoreceptor Srh) , PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd) , PF10326 (Serpentine type 7TM GPCR chemoreceptor Str) contains similarity to Interpro domains IPR019423 (7TM GPCR, serpentine receptor class j (Srj)), IPR019422 (7TM GPCR, serpentine receptor class h (Srh)), IPR019421 (7TM GPCR, serpentine receptor class d (Srd)), IPR019428 (7TM GPCR, serpentine receptor class r (Str))" /note="Predicted" /db_xref="GOA:A8XDH5" /db_xref="InterPro:IPR019428" /db_xref="UniProtKB/TrEMBL:A8XDH5" /protein_id="CAP30694.1" /translation="MPYYQLDELTRFIAKVGFIFTSLLVLLFIFLTIYFVKRDFGSYR NLLIAFSILGFSFSSSEYIVHPMIHSYSAGFVFFTNPQTSIVSNDVMKIGLVFFCGIY GSTVCFIAVQFMYRYWALFDAPKIKWFESWRILLWCCYSLSIGILWAGGIHWFLEIDD FSIDYFQQGVRQIYGLELSSIPGFTSVIYTRKGDVRWRNLMCTIEMTMIIGMQYMIIC FCGRKMSTGMKEKISMLSETSRRLHTQFFKSLVLQIVVPTFLLFLPMIIIIYLPLFNL EFSFPTGILFSAFAIYPAIDIAIILYIVCDYRNAIKYVLESMKSVCMSGGYSSQEVSF PICTTNNQMVYPHHTTGV" CDS complement(join(60396..60493,60538..60715,60766..60894, 60942..61209,61252..61330,61374..61677)) /gene="CBG11559" /locus_tag="CBG_11559" /standard_name="CBG11559" /product="Protein CBG11559" /note="contains similarity to Pfam domains PF10319 (Serpentine type 7TM GPCR chemoreceptor Srj) , PF10327 (Serpentine type 7TM GPCR chemoreceptor Sri) , PF10318 (Serpentine type 7TM GPCR chemoreceptor Srh) , PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd) , PF10326 (Serpentine type 7TM GPCR chemoreceptor Str) contains similarity to Interpro domains IPR019423 (7TM GPCR, serpentine receptor class j (Srj)), IPR019429 (7TM GPCR, serpentine chemoreceptor class i (Sri)), IPR019422 (7TM GPCR, serpentine receptor class h (Srh)), IPR019421 (7TM GPCR, serpentine receptor class d (Srd)), IPR019428 (7TM GPCR, serpentine receptor class r (Str))" /note="Predicted" /db_xref="GOA:A8XDH6" /db_xref="InterPro:IPR019428" /db_xref="UniProtKB/TrEMBL:A8XDH6" /protein_id="CAP30695.1" /translation="MLENTTIAFSKWLTLSKVITSAGFFSTTISVATFLILTVFFVKT SYDNYKRYMIVFSVLGFALAAIEAAVNPIFHSYNYGFVMFSFSHPFGAPSDVSFTLLL VYTGFYAATISFLTAQFFYRYLAIVHPQLVPVFFGGWKLILWILYACYFGLQWALGVT FFARLDEVSTDYMEDEILQYYGKRVEEIAMCAVVAFDKNHELRWFNLMCVLNMTLIMM VQYGLIITFGWRMSLKIREAVSMLSTSMIRLHTQFFKVLVLQILVPTITLFMPVFILM YTPMFDFQIRFPSGVMLSAFSFFPAMDAIIVMYILTDYRNAIKNMFEGFSATVHGAMR VSNVADGSQMSRWTTRS" CDS join(62510..62704,62751..62838,62882..62960,63010..63211, 63256..63456,63499..63684) /gene="Cbr-str-28" /locus_tag="CBG_11560" /standard_name="CBG11560" /product="Protein CBR-STR-28" /note="C. briggsae CBR-STR-28 protein; contains similarity to Pfam domains PF10319 (Serpentine type 7TM GPCR chemoreceptor Srj) , PF10318 (Serpentine type 7TM GPCR chemoreceptor Srh) , PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd) , PF10326 (Serpentine type 7TM GPCR chemoreceptor Str) contains similarity to Interpro domains IPR019423 (7TM GPCR, serpentine receptor class j (Srj)), IPR019422 (7TM GPCR, serpentine receptor class h (Srh)), IPR019421 (7TM GPCR, serpentine receptor class d (Srd)), IPR019428 (7TM GPCR, serpentine receptor class r (Str))" /note="Predicted" /db_xref="GOA:A8XDH7" /db_xref="InterPro:IPR019428" /db_xref="UniProtKB/TrEMBL:A8XDH7" /protein_id="CAP30696.1" /translation="MGLDFTILSDHISRFCFISTVLLNYSLIHLTIFHTKHISGTYQK MIVTFAVIGILFSTLDILVRPLFHSYNGCFIYFTLGGTFRESKQAAELGLLIYCGFYS MILAFLAVQFLYRACVISNPDWGKQFEGWKYSLWLVYTLIGGVIWAYASNITHPDDVT LEYMRDEVLQIYGVEIKSVPHFAVLAYVNYEGESKTIRWNSVQCIGTVSVLMTLQYSI ILICGVVMYRRTQGKLLSTSSRYEKMQKQFFIALIYQIAAPTIFFQLPGFFVLTSPFY DMKISFRSGIVVCFFSVYPLVDTLIVLKVITEYKHAYKRG" CDS join(65435..65656,65702..65868,65914..66048,66113..66549, 66592..66713) /gene="Cbr-str-23" /locus_tag="CBG_11561" /standard_name="CBG11561" /product="Protein CBR-STR-23" /note="C. briggsae CBR-STR-23 protein; contains similarity to Pfam domains PF10319 (Serpentine type 7TM GPCR chemoreceptor Srj) , PF10327 (Serpentine type 7TM GPCR chemoreceptor Sri) , PF10318 (Serpentine type 7TM GPCR chemoreceptor Srh) , PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd) , PF10326 (Serpentine type 7TM GPCR chemoreceptor Str) contains similarity to Interpro domains IPR019423 (7TM GPCR, serpentine receptor class j (Srj)), IPR019429 (7TM GPCR, serpentine chemoreceptor class i (Sri)), IPR019422 (7TM GPCR, serpentine receptor class h (Srh)), IPR019421 (7TM GPCR, serpentine receptor class d (Srd)), IPR019428 (7TM GPCR, serpentine receptor class r (Str))" /note="Predicted" /db_xref="GOA:A8XDH8" /db_xref="InterPro:IPR019428" /db_xref="UniProtKB/TrEMBL:A8XDH8" /protein_id="CAP30697.1" /translation="MELFQNQSKSYKSWVTIAQSVAEAGFCSTMVFCGILIFLTIFGV KRNFGSYKYLLILFPAVGIFFATVELILYPNVHSFNAGYFFYSTRRPFGVGIEIVTIL MAFYTSIYASTICMLSVQFVYRYWAIFDETKLRFFKGWKFLFCVAYSVIVGAQWGLSM YFFNQMDDYTDHYMREELLYRYDLTITEIARLCLVSYNEDGSLRWRNNSSTIDMTIFM IVQYTIVIYCAIVMYQKMEEKLKMLSVSLRNLHKQFYKTLLLQIFTPTLCLFAPVVFI IYLPLFDLKISIPTGMFLCAFTLYPALDAMIVMYIVTDYRNAAKKMLKKIFDWMYSIL SLNELPENGTTTAQTRETALGSRVWS" CDS complement(join(67721..68037,68081..68186,68339..68400, 68447..68582)) /gene="CBG11562" /locus_tag="CBG_11562" /standard_name="CBG11562" /product="Protein CBG11562" /note="contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domain IPR001304 (C-type lectin)" /note="Predicted" /db_xref="GOA:A8XDH9" /db_xref="InterPro:IPR001304" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="UniProtKB/TrEMBL:A8XDH9" /protein_id="CAP30698.1" /translation="MVYPNPLILIDAEQSISDDHSNTMKFVLLLLIPTLSSAQLDLSA IKKQATTPSGPTVSTAVATTTTKMLDVLTQSTAEEECVSLGAHLASFETPEEATAIKN LVLFAPLFSDDLQTFWSSSQESWIGLSKTSNGAWKWSDSTEVDFTNLPDGTSVSEASC VSVSGKILFRNRSVFLKMNISGVWQSNKCSSTVSSFICKRTADSTA" CDS complement(join(68723..68835,68883..69319,69365..69499, 69594..69760,69810..70031)) /gene="CBG11563" /locus_tag="CBG_11563" /standard_name="CBG11563" /product="Protein CBG11563" /note="contains similarity to Pfam domains PF10319 (Serpentine type 7TM GPCR chemoreceptor Srj) , PF10327 (Serpentine type 7TM GPCR chemoreceptor Sri) , PF10318 (Serpentine type 7TM GPCR chemoreceptor Srh) , PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd) , PF10326 (Serpentine type 7TM GPCR chemoreceptor Str) contains similarity to Interpro domains IPR019423 (7TM GPCR, serpentine receptor class j (Srj)), IPR019429 (7TM GPCR, serpentine chemoreceptor class i (Sri)), IPR019422 (7TM GPCR, serpentine receptor class h (Srh)), IPR019421 (7TM GPCR, serpentine receptor class d (Srd)), IPR019428 (7TM GPCR, serpentine receptor class r (Str))" /note="Predicted" /db_xref="GOA:A8XDI0" /db_xref="InterPro:IPR019428" /db_xref="UniProtKB/TrEMBL:A8XDI0" /protein_id="CAP30699.2" /translation="MNTVNENPNSFIRYARYVQRIAQFGFFSTSVFCSLLIYLTIFWL QRSFGSYKYLLVLFPSVGILFATVELILYPDVYSHNSGYLFFTPLRPFNLGRDMVTAL LSFYSGVYAYTISMLSVQFIYRYWAIFDTTKLRYFKGWRFSICVLYSSVFGVLWTMGI YCFDEMDEYSEKYMEKDLLERYNLTVSEISSLALVTYNEDGSLRWFNISGTFDMTAIM LLQYTVIIYCAIWMYHGMEEKLRSLSLSMRNLHKQLFKTLILQIVTPTISLFSPVFFI IYLPFFDLKVDLPTGIFLAVFTIYPAMDAMIVMYVVADYKKAGKRILKKLVDKAYNWI NGLDEEENTKEINANIPAALNAL" CDS complement(join(70386..70498,70546..70600)) /gene="CBG11564" /locus_tag="CBG_11564" /standard_name="CBG11564" /product="Protein CBG11564" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XDI1" /protein_id="CAP30700.1" /translation="MDAMIVMYVVADYKKAANRILKKLVDKAYNWINGLDEEGNTKEI NANIPAALKAL" CDS complement(join(73528..73656,73704..73852,73907..74139, 74188..74219)) /gene="CBG11565" /locus_tag="CBG_11565" /standard_name="CBG11565" /product="Protein CBG11565" /note="Predicted" /db_xref="GOA:A8XDI2" /db_xref="InterPro:IPR019430" /db_xref="UniProtKB/TrEMBL:A8XDI2" /protein_id="CAP30701.2" /translation="MLGVFFPETILGYSIYPPLMESILITTGINLMVFNEFQSIYTAV NRLFAIFFPIKCNLFFGIKATLTFHILYYLDRIRNLTMEHFDRYRESNFMTFSPKYLA HIGSIVSPDGMFYWGLALLIFPFLINVVTFIRFYYMKKRTSRESEHWKKAKKNMILFL QTVFQDALFSLNVFFALKWQ" CDS complement(join(77046..77131,77516..77666)) /gene="CBG11567" /locus_tag="CBG_11567" /standard_name="CBG11567" /product="Protein CBG11567" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XDI3" /protein_id="CAP30702.1" /translation="MKFILALLVILGLVATGGLGYNIPIRKRLVDMRSLSLYDFPEDY YMAQQEEQRQQHYINPKPNYVTAFYPIYDFGKRR" CDS complement(join(79720..79926,79977..80042)) /gene="CBG11568" /locus_tag="CBG_11568" /standard_name="CBG11568" /product="Protein CBG11568" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XDI4" /protein_id="CAP30703.1" /translation="MNKQLLLVVLVLALIAQAQAYYLYYYYPQNNNNGYTTYYLYPNN NNNGQTTYYYDNGNNGNTGTTYYYYPNNNGYSYYYPYTYYYTYGRK" CDS join(80425..80487,80544..80729) /gene="CBG11569" /locus_tag="CBG_11569" /standard_name="CBG11569" /product="Protein CBG11569" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XDI5" /protein_id="CAP30704.1" /translation="MRFLTLIATLLALLATANAYYTYYYYPNNNGYYNNNGYTTYYYY PNNNNNGQTYYYYPNNNNGCSGCNSNGYTTYYYTWGKK" CDS complement(join(80877..81539,81585..81689,81732..81938)) /gene="CBG11570" /locus_tag="CBG_11570" /standard_name="CBG11570" /product="Protein CBG11570" /note="contains similarity to Pfam domain PF03328 HpcH/HpaI aldolase/citrate lyase family contains similarity to Interpro domains IPR011206 (Citrate lyase, beta subunit), IPR005000 (Aldehyde-lyase domain)" /note="Predicted" /db_xref="GOA:A8XDI6" /db_xref="InterPro:IPR005000" /db_xref="InterPro:IPR011206" /db_xref="InterPro:IPR015813" /db_xref="InterPro:IPR040442" /db_xref="UniProtKB/TrEMBL:A8XDI6" /protein_id="CAP30705.1" /translation="MLPKTFIRHISQFAGVRDAAKYVPRRALLYVPASNQKMLDKIPT MQADSVVIELEDGVALTAKAEARAQAAVALDKIPYHSLACQELGLRVNSVSSGLLEDD IKAISKAEKLPHAFMVPKVDSPEDLVTIYNIFREHYGDERITNTNTRLVIWIESARAL LDMPRILSSTLNLHKQAGFFKLDAVVFGSDDFCADIGSTRSSHGTETLFARQKFVTCC KAFQLQAIDSVYIDIKDLDGLKRQSAEGRQWGFTGKQVIHPSQVSVVQEQFLPPKERI EWAQELVHAYSEHESLGKGAFQFRGQMIDRPLLLQALNIIQLVERVQN" CDS join(82291..82370,82416..82485,82538..83284,83329..83460) /gene="CBG11571" /locus_tag="CBG_11571" /standard_name="CBG11571" /product="Protein CBG11571" /note="contains similarity to Pfam domains PF09229 (Activator of Hsp90 ATPase, N-terminal) , PF10604 (Polyketide cyclase / dehydrase and lipid transport) , PF08327 (Activator of Hsp90 ATPase homolog 1-like protein) contains similarity to Interpro domains IPR019587 (Polyketide cyclase/dehydrase), IPR013538 (Activator of Hsp90 ATPase homologue 1-like), IPR015310 (Activator of Hsp90 ATPase, N-terminal)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XDI7" /db_xref="InterPro:IPR013538" /db_xref="InterPro:IPR015310" /db_xref="InterPro:IPR023393" /db_xref="InterPro:IPR036338" /db_xref="InterPro:IPR039981" /db_xref="UniProtKB/TrEMBL:A8XDI7" /protein_id="CAP30706.1" /translation="MAKWGEGDPRWIVEERADATNVNNWHWSEKNATPWSLNRLRELL TGFSAEDGPIVVTIDEIKKIDGEATANNRKAKLIFLFEWVIEGTFIARISGSEEEYKG KFDIPNLSDENDASEVDLNTSLDGNGPMAHNVRQVLNKSFVKKIQDVLGIYIRELKEE FSKGLILPTDQVKPQVVTKGKTTVVDKRQFQNTVIAEKDVSTSGNEVFSTKEVSVSDT FKATPERVFEAITETQLVRGWTNGSIQEWDFKEGGKFALFGGNVTGTFEKIEPSKEIV KKWRLKKYPNNHHATIHFTLKDNGSGTDIKITAKEVPTHLADETQTGLDRYYLTSIAR TFGFSQRI" CDS complement(join(83646..84038,84085..84382,84427..84721, 84768..84882)) /gene="CBG11572" /locus_tag="CBG_11572" /standard_name="CBG11572" /product="Protein CBG11572" /note="contains similarity to Pfam domain PF01008 Initiation factor 2 subunit family contains similarity to Interpro domains IPR000649 (Initiation factor 2B-related), IPR005251 (Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase), IPR011559 (Initiation factor 2B alpha/beta/delta)" /note="Predicted" /db_xref="GOA:A8XDI8" /db_xref="InterPro:IPR000649" /db_xref="InterPro:IPR005251" /db_xref="InterPro:IPR011559" /db_xref="InterPro:IPR037171" /db_xref="InterPro:IPR042529" /db_xref="UniProtKB/Swiss-Prot:A8XDI8" /protein_id="CAP30707.1" /translation="MAPKINKIVNGPIPDSFLADETKRLDSLKFDGQRLEVLDQLLLP HEFKYIPVNDVSDAFNVIKSMQVRGAPLIAVVGSLGLLLEFNKNSELNIETIREKIEY LITSRPTAVDLRNSVTGLIPILETEGITDDEKLAKCQEYLLNVYTAEKLQNRILLWNA YQELLTAFPGKEKFTVMTICNTGSLATVSWGTALGVIRALHSENRLNLAYVLETRPYN QGIRLTATELLHGQVPFKLITDSMAAWAMKNHQLDCVLVGADNVARNGDTANKIGTYM LAVLCKHHNINFYPVVPFTTINKNISSGEEIKIEERAASELLRVNGVLVGNSECPVWN PAFDVTPAHLITKILTDFGNWSPAALEEQIPR" CDS join(85280..85414,85468..85616,85662..85825,85874..86287, 86334..86448,88046..88116,88159..88292) /gene="CBG11573" /locus_tag="CBG_11573" /standard_name="CBG11573" /product="Protein CBG11573" /note="contains similarity to Pfam domain PF00814 Glycoprotease family contains similarity to Interpro domains IPR017861 (Peptidase M22, glycoprotease, subgroup), IPR000905 (Peptidase M22, glycoprotease)" /note="Predicted" /db_xref="GOA:A8XDI9" /db_xref="InterPro:IPR000905" /db_xref="InterPro:IPR017861" /db_xref="InterPro:IPR022450" /db_xref="UniProtKB/TrEMBL:A8XDI9" /protein_id="CAP30708.2" /translation="MYFSCDDTAVAVVTSDRVILSSERITERAIQRKQGGINPSVCAQ QHRQNLPILIEKCLEDAGTSPKDLDAVAVTVTPGLVIALKEGIAAAISFARKHKLPLI PVHHMRAHALSILLVDDSVQFPFSTLLLSGGHALIAVAENAENFKLYGQSVGGSPGEC IDKVARHLGDLESEFDGVHAGVAVETLASRSSEFGHQRYPISFPSVGKADMNFDQIKG SYLNLLDKLRRTEKEKVNVSDFCASLQNTVTRHIASKLHVFFDTLDSEKRLPKQLVVG GGVAANEYIFNAVSKLSSAYGVSTVKTPLTLCTDNAEMIAYTGILMHLNRSESIYWRS EDIPDTIYAHARTPIGPDASSEILNFPRRELVNSTIHGSGPIRFRNYDNFRKVTLCRN S" CDS 88413..88544 /gene="CBG27212" /locus_tag="CBG_27212" /standard_name="CBG27212" /product="Protein CBG27212" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IIA5" /protein_id="CAR99635.1" /translation="MRTRRRSTSKNNDQKSKRKKEKTRFRDGLERVCDCWHGRLERE" CDS complement(join(88743..88837,89266..89477,89530..89632, 90223..90379,91955..92000,92226..92311)) /gene="Cbr-unc-76" /locus_tag="CBG_11574" /standard_name="CBG11574" /product="Protein CBR-UNC-76" /note="C. briggsae CBR-UNC-76 protein; contains similarity to Pfam domain PF07763 FEZ-like protein contains similarity to Interpro domain IPR011680 (FEZ-like)" /note="Predicted" /db_xref="GOA:A8XDJ0" /db_xref="InterPro:IPR011680" /db_xref="UniProtKB/TrEMBL:A8XDJ0" /protein_id="CAP30709.2" /translation="MDAADLRVPDIPLASCDDEDIDSNKNLSKLKQNQQFIAAETAEI SCDFTGSMMTDRTMESVDSMYSSMRSPYPSSIQSSEADIKLRSAQALVSNPDNLQELS YSKLVTLCAEMEQLIRVYNESLVDELAHRDELDYEKEMKNSFISLLLAIQNKRRVYAN DRKRKGGKASDASQLPQYLTATIPYNDNQHIDNASIASLIKILRAIHDDSTTVPTLLT DYILTHVCPKNIAC" assembly_gap 90865..91864 /estimated_length=1000 /gap_type="between scaffolds" CDS complement(join(94244..94247,94766..94870,94917..95038, 95084..95392)) /gene="Cbr-dnj-3" /locus_tag="CBG_11575" /standard_name="CBG11575" /product="Protein CBR-DNJ-3" /note="C. briggsae CBR-DNJ-3 protein; contains similarity to Pfam domain PF00226 DnaJ domain contains similarity to Interpro domains IPR003095 (Heat shock protein DnaJ), IPR001623 (Heat shock protein DnaJ, N-terminal), IPR018253 (Heat shock protein DnaJ, conserved site)" /note="Predicted" /db_xref="GOA:A8XDJ1" /db_xref="InterPro:IPR001623" /db_xref="InterPro:IPR018253" /db_xref="InterPro:IPR036869" /db_xref="UniProtKB/TrEMBL:A8XDJ1" /protein_id="CAP30710.2" /translation="MSQLISRRLFASYITRKNYYEIIGVPATATKEQIRDAFLAKTKK LHPDQSQKSIKDSRVGWATGFSDTEQFMLVKEAYDTLRNEEKRKEYDLAYSREGGFLM EATHKTQQMSTQRRNIQRAEWSADVIPDAKKKAGKTVYSHFRNPEEEYLKEKQKNRML VVLAAVVIGLIAANVLYIS" CDS complement(join(95829..96361,96405..96561)) /gene="CBG27213" /locus_tag="CBG_27213" /standard_name="CBG27213" /product="Protein CBG27213" /note="Predicted" /db_xref="GOA:B6IIA6" /db_xref="UniProtKB/TrEMBL:B6IIA6" /protein_id="CAR99636.1" /translation="MRQDDDAESMTPEDENEGNLKMAVGATNTRKIMVYSRKVFSVVS CIFLAYALGNMTLFITPGVREFVQQYHFLVYLCTPLPLISKILISGIERLSHPPKLPL LYLVFILHLLAIFLSFTSLSLFFDTEIAYFSCFIIFMNLILLVFYTLQNSSVLSAPRM FLLLIVITSVNSVLLPTFLSIFVFPYIPVIVISLLVTFYINFNICHFTNSLSSRDWPI AAVWIFSRLPL" CDS complement(join(96772..97530,97578..97685)) /gene="Cbr-otub-1" /locus_tag="CBG_11576" /standard_name="CBG11576" /product="Protein CBR-OTUB-1" /note="C. briggsae CBR-OTUB-1 protein; contains similarity to Pfam domain PF10275 Peptidase C65 Otubain contains similarity to Interpro domains IPR016615 (Ubiquitin thioesterase Otubain), IPR019400 (Peptidase C65, otubain)" /note="Predicted" /db_xref="GOA:A8XDJ2" /db_xref="InterPro:IPR003323" /db_xref="InterPro:IPR016615" /db_xref="InterPro:IPR019400" /db_xref="InterPro:IPR038765" /db_xref="InterPro:IPR042467" /db_xref="InterPro:IPR042468" /db_xref="UniProtKB/Swiss-Prot:A8XDJ2" /protein_id="CAP30711.1" /translation="MVNDTSENQPTTAGIVTTTEDELILQDQQMKRIEDEQKASPLVG EKMPCATLVSLYDQETAPAFFEKANELAKVYSHIRFIRGDGNCFIRAIQVGLVEILLN DKERLVKFIASCKEWTERLVKLGFPDWTCTDFCEFFIEFIEKVRDGIHQKEDVFRIFN DDNTANYLLMFFRLITSGYLKEHAAEYEPFLDEGMSLAQYCETEIEAMWKESDHLGII ALVRALNIRIRIEYMDRNAAPNGGTHHNLPDGHDNATFTPDITLLYRPGHYDLIYKAP AETSKPALPPVA" CDS join(98972..99106,99151..99327,99377..99467, 100076..100218) /gene="Cbr-rap-2" /locus_tag="CBG_11577" /standard_name="CBG11577" /product="Protein CBR-RAP-2" /note="C. briggsae CBR-RAP-2 protein; contains similarity to Pfam domains PF00071 (Ras family) , PF00009 (Elongation factor Tu GTP binding domain) , PF08477 (Miro-like protein) contains similarity to Interpro domains IPR002041 (Ran GTPase), IPR000795 (Protein synthesis factor, GTP-binding), IPR013684 (Mitochondrial Rho-like), IPR003578 (Small GTPase superfamily, Rho type), IPR005225 (Small GTP-binding protein domain), IPR001806 (Small GTPase superfamily), IPR003579 (Small GTPase superfamily, Rab type), IPR020849 (Small GTPase superfamily, Ras type)" /note="Predicted" /db_xref="GOA:A8XDJ3" /db_xref="InterPro:IPR001806" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR020849" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR041840" /db_xref="UniProtKB/TrEMBL:A8XDJ3" /protein_id="CAP30712.1" /translation="MREFKVVVLGSGGVGKSALTVQFVSSTFIEKYDPTIEDFYRKEI EVDGQPSVLEILDTAGTEQFSSMRDLYIKNGQGFVVVYSITSQQTFHDIRNMKEQIVR VKGSENVPILLVGNKCDLSHQRQVRSEEGLALAESWSCPFTECSAKNNQNVNVTFAEI VREMNYVQSRSRQSKTCCTLM" CDS complement(join(100625..100759,100804..100868, 100921..101034,101228..101279)) /gene="CBG11578" /locus_tag="CBG_11578" /standard_name="CBG11578" /product="Protein CBG11578" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XDJ4" /protein_id="CAP30713.1" /translation="MKFLLVIAILALWIQATESTTCFVQNSIPSVFTQVCPGNIYTCM KFDCRVNNPKKFKQTTKGCNDPGNPQVACTQLMTQCQAQGGTGQCYTCNGDYCNSTTT TFAALLSISIPAISFFLLH" CDS join(102349..102557,102605..102697,102744..104108, 104153..104805,104855..104973) /gene="Cbr-mcm-3" /locus_tag="CBG_11579" /standard_name="CBG11579" /product="Protein CBR-MCM-3" /note="C. briggsae CBR-MCM-3 protein; contains similarity to Pfam domains PF00493 (MCM2/3/5 family) , PF01078 (Magnesium chelatase, subunit ChlI) contains similarity to Interpro domains IPR018525 (Mini-chromosome maintenance, conserved site), IPR008046 (Mini-chromosome maintenance complex protein 3), IPR000523 (Magnesium chelatase, ChlI subunit), IPR003593 (ATPase, AAA+ type, core), IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase)" /note="Predicted" /db_xref="GOA:A8XDJ5" /db_xref="InterPro:IPR001208" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR008046" /db_xref="InterPro:IPR012340" /db_xref="InterPro:IPR018525" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR031327" /db_xref="InterPro:IPR033762" /db_xref="InterPro:IPR041562" /db_xref="UniProtKB/TrEMBL:A8XDJ5" /protein_id="CAP30714.1" /translation="MDGQNDGMFIDRAEDARKQEITEQYLNFLDNQSDTHHYRQKIVK MMNDGESRLVMNLDEIREVMPERAEGLLTQSVLEMNCLQSALEMAINRSDVQAIVKTG FHVGFEGTFGERHVNPRTLKSSYLGNLVCCEGIVTKCSTVRQKLLTSVHYCPATNKVL EKKFADFTMLDTVVTNNAYPTEDENKNPLETEFGHSVYKDHQTFTIQELPESAPAGQL PRAVDCVADLDLADRVKPGDRVRIIGIFRVLPNKQNGVSSGSFRSIIILNHIQMLSKE VIPNFEPQDVRDVRKISKSRDPFDLLASSLAPSICGHEETKKALLCLLLGGMEKILNN GSRLRGDINVLLIGDPSVAKSQLLRYVLRMAPRAITTTGRGSSGVGLTAAVTTDPDSG ERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHAKLNARCS VLAAANPVYGRYNPFKSPMENIGMQDSLLSRFDLIFVLLDEHDADRDADVAGHVLKLH TYRTQGEADGTVLPMGGGVETISTVNMETKKASSSIYEENTQWAGIQNKKILTMEFMR KYIHLARAVQPKLTDETTEYISEVYADIRSFDITKTDQERTMPVTARQLETLIRLSTA IAKARFSKKVEREDAEKAYNLLHFACFKEKPKARQEYEKKKRVPRHEGEDEDEQSDDE PEEMNDEPGSSSVPTAATPRRGVRRRAADDDSQSSMNDTTVTESQPTAKRARTGPAAI GIDRYKELKKYVRKAFDDIGSTDDMVDLHIITDSIQTQAGSNKFTDDELTAGYEQLEN DNAAMIADDKITLI" CDS complement(join(105224..105430,105476..105625)) /gene="CBG11580" /locus_tag="CBG_11580" /standard_name="CBG11580" /product="Protein CBG11580" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XDJ6" /protein_id="CAP30715.1" /translation="MTSSSGLPQIETRVNWQEISTIEKKIIDALKGIKVRDISEANMI LSKKNGEIHVQIELKPFAFPDTERCKGVLANTTSLVGQQRIGCLGIEYRQEKASRRGR RLRMSTGVQTVSTAQQ" CDS complement(join(105744..106040,106521..106687, 106961..107123,107169..107272,107518..107722, 107769..107894)) /gene="CBG11581" /locus_tag="CBG_11581" /standard_name="CBG11581" /product="Protein CBG11581" /note="Predicted" /db_xref="InterPro:IPR001279" /db_xref="InterPro:IPR036866" /db_xref="InterPro:IPR039344" /db_xref="UniProtKB/TrEMBL:A8XDJ7" /protein_id="CAP30716.1" /translation="MRNRSYLLPIFIISLVDSCDKGLTQLRHKDTLQLMRCVPTLPGH PDPCILQTGGQMSFCQPDGQDYVCCGTPELLVDLVGSQNKPLFPDNYSFYPRQSHYDY SVLVRSSKEQLESDPTFKNQVVLTTPKTTTTTFTTTRKRQSIKKSNVVLQMLTIPSLS RGNYSNSLKLSTNSVLVRDGSCVFVVDTGLPAQKKQIIKNLASYGAPAKKIKFVVITS SQPQFSGNLNLFPYSQFIIADATMYKDNIVFMKRFEKHSILELCSPNSLIQSTPGPTP NSITVIVRNVELMGTIAIAGALFPNGNDLNVFDRNSIYDIDKLIESRNLIICEVDWIV PASSSPFRVTALHRTNANC" CDS join(109894..110005,112206..113501,113667..113738, 114387..115103,115150..115482,115530..117182, 117234..117400,117448..117669,118067..118344, 118395..118596) /gene="Cbr-sdc-3" /locus_tag="CBG_11582" /standard_name="CBG11582" /product="Protein CBR-SDC-3" /note="C. briggsae CBR-SDC-3 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XDJ8" /protein_id="CAP30717.1" /translation="MKSASTHTAHILSRIGTNTFAPHGCCARNVRRREGTTQMSTSQA KDVQPSVPAPEQIRRDATSILLSILTPEQHATLLAELQQKSQATLTLEQVMQSLSGPV ELATQQKEPSQVEPPRAVTPVEPSVSSADASESPVESGESPGSRERSRTPSEASDADP VEYVPTSKNNSPMKIVDKSMERLSTKEHNHDLSKYQVSDVSFDKFSKWKQSEKKCRSR KRKVKEAKQPVPETTEEVVQELCQTVKDLDTDRNEQNKPKNQNIFSFDQDLHIEMDDP EDEEIEQEEGERQQAETHREPDEMDQEEESDDEAVERMVNKCSWIQKMSLQAEEERWK SMPDPELAEGSSSQEPEPIKETEASYDPDDPFSVGYPGTIQASEIPGLAEFIDKVNKD PPPIKPPVEEKEEDDDDVPWWRKGSDGTDSDESDSEGSIDFKSPPPRFREAETCMDPW NHYPPKESDFHNYVYVPPEGLTDELYRDLWFSYCGYKSIKPDPSIKLIRRERNIHARW VMAEPRRIPGWNYPKFDPEELERKIQAWEERRHYATDDEEREDPIDYSTMTIKYCYDG EECSEEVFNEKERLLKEKLERIRNGTQPEPERVQIKMREKQEADRKSLEKKKKAEEKK AAAKKRGRKPKTRSDAVDPEDEPVEIIRPMELTTANLAAFLGKDLEKMKQNKAKRQKV IDLEKPIVVVDLEPEPAVVTLDDEMPDELIISPDELCVVGEVITRSDGIEILENVPTP MEPELTEMDVPPAVAFEEIQHEEEEYHIDSEEMFHVEQPTLEETEDGVPAIPIENPTE QLEDFNESILKSPESEQSVSPAPVREISPDTEMHLLGTQALIHDEEFAAPTVGRPAPD ILKELDTDFDIPVETETVQEPVSFSPASEFEKSPSPSTLLDAIESTDYAVSPELELAS SPLNILEKSPSLSALLDEDLLNEKPQAGILAKEYTVDELLGEYGELNEVVDTVTADIE HELLDDLLEEPADDTPKQAEEPMEPEVAAFETIENVAEPAKMAPEKIARPIDMPMQVE EPIPEFAEPQISAPETIAPPVSEDDPVEEPTGDRPTVDPIEPVIDAPETIEPVAEPAK KAPKKCGRPKKRVPPKRVFKKPAVEVAAEAAPEAEDEEEKEEITVRTTRSRADGSKAA IPAEPEKKKRKRRGDSPPPQPSQAIRAKRLYLSKNNPVPIIRAKVPEEESTPATPIRQ TGVLGKEKPTEEEETDMMKQLPAALQHLMQDEDIENQDEDYDGGEAIKSELVDECWVA PAPVKPGYRKSRKRQRAEQTQRVIEGIKREVTVDPEVEVTKTLIREVKTEVDTDILVL QATYNISDSLAELEPEMAPVKFIDPNGEKNPTHKYLVTKKLWEGANQVFLSDPKKFSQ LVMLLNSDVQKKGRVFNFSVLVEDRTSEFEPALIDYLSKSPRTMTAEQQSCLNYMQFS KTFRSKASIRLNDCRVTAVTLHPLLEKISEIKKEIMNNTPSGLIGEGERDTLVATETL LSGQFIESCMKMASLSQVAWATEAHLKRRLEMVMDGWTMFLRNGGFFRVLLALQRGDV KPIRDEFRTYCIEYLADIEKNYEIAKKFFAMNDEGAMEALREETKLTVEDIEALDTDI RVESSESHTFKCSTCFCQGQNIHFSSKQLLNQHEKIHSSETEECGKCYEDLSSSDMAF HRILHHDSMRVEDIY" CDS join(119922..119993,120035..120429,120478..120577, 120623..120776,120825..121317,121364..121538, 121585..121643,121845..121941,121986..122339, 122394..122543) /gene="Cbr-cng-1" /locus_tag="CBG_11583" /standard_name="CBG11583" /product="Protein CBR-CNG-1" /note="C. briggsae CBR-CNG-1 protein; contains similarity to Pfam domains PF00027 (Cyclic nucleotide-binding domain) , PF00520 (Ion transport protein) contains similarity to Interpro domains IPR018488 (Cyclic nucleotide-binding, conserved site), IPR005821 (Ion transport), IPR000595 (Cyclic nucleotide-binding domain)" /note="Predicted" /db_xref="GOA:A8XDJ9" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR014710" /db_xref="InterPro:IPR018488" /db_xref="InterPro:IPR018490" /db_xref="InterPro:IPR032406" /db_xref="UniProtKB/TrEMBL:A8XDJ9" /protein_id="CAP30718.2" /translation="MAENASTTTTARRETFGGIVYRIYAFKGWVERARKRLRLFREVD VDVESNFRTALREDPEDEKENSGFLSFTIDEHGNAFYLWTCLVSLVALHPLVFTSLSV FQNVHSFLRTTGPINLLLDLINILDLIAHTRIEYVENGVAVKNLSKLMHHRLKSKFFI LDVIAVIPTESLEVFGESFFWARINRLTKCYRLFNFSTQTDTRTTSPHAFGLFKLIFI CMVIFHWNGCLYFHISKVYNYATARLEHWIFSYDKIINPILATCATDDIYDKNFCDTD DLLITHLPDNEVQSTVTSFMSTWDNKFESTDLLFCYSNFSRTETLKFANFFRQYALCF YWSALTLVTLGEQPSPCTTFQNAFEIGDTLLGLVIFAVIVGDVGNMVVAINLRKSEFE NVLDGCKRFMVYRKVPHLLRNKAVEYFGYVWAHGGAQVDEEEIAEFLPPRLFGEIAVE IHMDTLKKVKLFENCDPRLLYELILKLQLRVYSPMDYICKKGEVGTEMYIVKEGFVEV VSEDGQTIFVTLPAGFVFGELSILNIPGNKNKNLRTASVRSKGYSDLYVLDKEDLWEA LREYPQAKDSLIQKGIQILEKDKMIDPDMVDDDEGDFNGPIEDYIEHLNQEILKLTAM VDDAEKSIHASQQKMKNRLFGVEMELIEEMKKMKEGMGECEKEELKFWKKKRTNVCLL " CDS join(125497..125555,125840..126050,126219..126316, 126366..126453,126557..126639,126687..126765, 126815..127332,127691..127847) /gene="Cbr-obr-2" /locus_tag="CBG_11584" /standard_name="CBG11584" /product="Protein CBR-OBR-2" /note="C. briggsae CBR-OBR-2 protein; contains similarity to Pfam domain PF01237 Oxysterol-binding protein contains similarity to Interpro domains IPR000648 (Oxysterol-binding protein), IPR018494 (Oxysterol-binding protein, conserved site)" /note="Predicted" /db_xref="GOA:A8XDK0" /db_xref="InterPro:IPR000648" /db_xref="InterPro:IPR018494" /db_xref="InterPro:IPR037239" /db_xref="UniProtKB/TrEMBL:A8XDK0" /protein_id="CAP30719.2" /translation="MGSPRIQSFKRQTVLHKGQRTRLPATYIAPEDVSIWDIIRPNLG KDFSRFTVPVFMNEPLSFLQRLSENVQYNYLLEKAAKCEDEMERMEYVAAFALATVSA NHKRMSKPFNPLLLETFELERNGVRFLAEQVSHHPPISAVYAESDEFTVEGTVEPTLS FWMTKLIANPHAHLKLTFKKTGEKFTWSAPKCAIYNVIMGKMYMNFTSHMKIESSGTY DAVFSFDNKGYYNHKGGDVHVEGHIFEGKNKIKALYGNWTLFLASCDQDDFKHHRKEY VQLFNESIHEKDKGPVIPGSKILWVSNQIPKLFEDQFHFTNFTLSLNEMYAGMSEKVA PTDSRRRKDMKALEDGKNDEAEEFKHKYEEEQRERRANKTGNVPMWFAKDEDGHWSYN GDYWAREFSNCLDLFESNDNNNSTRSNSSLSSSSSSAD" CDS join(128164..128298,128881..128960,129012..129332, 129556..129690,129736..129874,130263..130573, 130626..130965,131270..131325,131370..131875, 131923..132208,132253..132327,132872..133184, 133235..133543) /gene="Cbr-nmr-2" /locus_tag="CBG_11585" /standard_name="CBG11585" /product="Protein CBR-NMR-2" /note="C. briggsae CBR-NMR-2 protein; contains similarity to Pfam domains PF00497 (Bacterial extracellular solute-binding proteins, family 3) , PF10613 (Ligated ion channel L-glutamate- and glycine-binding site) , PF00060 (Ligand-gated ion channel) , PF01094 (Receptor family ligand binding region) contains similarity to Interpro domains IPR019594 (Glutamate receptor, L-glutamate/glycine-binding), IPR001638 (Extracellular solute-binding protein, family 3), IPR001320 (Ionotropic glutamate receptor), IPR001828 (Extracellular ligand-binding receptor), IPR001508 (NMDA receptor)" /note="Predicted" /db_xref="GOA:A8XDK1" /db_xref="InterPro:IPR001320" /db_xref="InterPro:IPR001508" /db_xref="InterPro:IPR001828" /db_xref="InterPro:IPR019594" /db_xref="InterPro:IPR028082" /db_xref="UniProtKB/TrEMBL:A8XDK1" /protein_id="CAP30720.2" /translation="MHWNYLLVFLFIGQLETLDLGGSRKVQKPKEDPRREDVNIAVVY QHYAGRSKSYDKAFKEVIRKINDATAVSSLRRLATRYNFQPVDCILPTGTFFVKEVLD CLCNNVTSNNVALIIFVTASETYDSTTAAEQYFLTAASYTGIPIIAWNADNAGFTFEN DLSPYRIIQMAPPIEHQARAMLALLRRYNWPKFGVVTSEMAGNDRFVTAVREELERFS NKSTKLYEMIHHCHLDTRNNTDVDLKLADVKKNQAKIILLYANAAQAGAVFAHAEKLD MIGEKYLWIGTQSVKGTQTTVKAPAQAGMLCVNFHTVSNAMFAPRDDILPLIIQLAPK LFGAALLQLRANEMFPMKSNVSCKSEDGDPYWENGKFIYEHMKSAFVKGNPFHVDDGH DSFFYTFEKTGRLRNSILQISNLRTNSKGEKTWEKVGIFTNNELKMADVQWPGEKANP PQGTADKFHVKVVTLHEPPFITVSDVDPDTQKCPGNQGSICDWGDVEYTDDAGVKKNR TLLKCCSGYCVDLLNKLATDIGFTYTLYKVRDEKWGLKTENGWNGLIADLMHNKADMC VTSLKLNSERARDIDFSLPFLDTGISIIVKIRSGVLSPTAFLEPFEYSTWVIILFVCI HVAAISIFIFEWVSPYSFNMQKYPPPEHKFSLFRSYWLVWATLFSASVSTDVPKSTVS RLMALVWAAFGLTFLAVYTANLAAFMITRVQYYDLSGIHDPMVREFLKPQNIRIFFKL NFPQDQKPPFRFGTVDGGNTHETMKRNWHKMHEYVKHNKFFRMNISSGIEAVKNEELD AFIYDAVVLDYWAGKDANCALMTVGKWASMTGYGIGFPKNSPHTALVNHYMLQYQQKG DLERLQNFWLTGACTPDSHSQTQSAPLGIENFLSAFVLLAGGIIVSVIVLGFEHFYCM HLRKPLQKIDPNGWCGIISMAMGKSLTFTEAVDRVQEWRSRTQSLASTNSPQLKRRRS ANLKPIEDAAPQEQFPRRSPRFLQVETNL" CDS complement(join(133695..134100,134147..134352, 134401..134609,134653..134777,135733..135828, 135875..136016,136063..136159,136203..136332, 136374..136749,136798..136882,136925..137090, 137373..137404)) /gene="Cbr-mut-15" /locus_tag="CBG_11587" /standard_name="CBG11587" /product="Protein CBR-MUT-15" /note="C. briggsae CBR-MUT-15 protein; contains similarity to Interpro domain IPR018247 (EF-Hand 1, calcium-binding site)" /note="Partially confirmed by transcript evidence" /db_xref="UniProtKB/TrEMBL:A8XDK3" /protein_id="CAP30722.2" /translation="MRSIIHFLSQSHRSGHSIRNLRDTISDYVFEVESAKHLFCIHRR PNPEFYYDRTVLSIPGRSVQRRSAFPCVLIVSDSEDDANYAFEHLCREQRKLKCRRPG VQLLNENSNFVNLNTAGVMIGSVHSIFRWLNFLTVERRGHELQKSLKFVIINNAEKII LIPQLNSFLYKISEFSETSRIKMLFMYGFAATQTAPLLDVIRSCQTVTSSEMFIEVDK PRERNFIKQVKFLLATPAEDYANEKAAQAFSKGKSLPDELLALYTTVMTPHAQKLNFC YMLIEKLRNERERFNMNRANKRRERILIVTKNSKVATTVTMYLKERSLKKVSANGQRK GFSVNCILTQDSVENVEKRNFEFRHGSLDVLVINWKSINDVVMSVGNLSGESVLIMNA RESTGDAEDALSQLIKIIDDNEGKNRVLIFCEDTKCRKLVLTLYGKRIESNIFIEEMH TDKRIVEEEIKKFDRSKVAVCSYAAFKLMNLPLVEKYVFLELPTWRKSTFSKTLKSIE KLVHDKDRKPHLEIFLQPKNDLSMTKSVFVEMKERRAIPIWLEDFIIKTFGTPELRQR YLERKAEKAKQNNTITSNNKEIQTEERKLDAPRLSETSSTSESNQSSVNPPVERPERV REEPFDIHNMQPNAQGNYVIPARFIAASYLNGGDEDGEEYADDDNYSEDDYDYNEDDM MDDLDYE" CDS join(138028..138061,138112..138295,138340..138890, 138943..139226) /gene="Cbr-fib-1" /locus_tag="CBG_11588" /standard_name="CBG11588" /product="Protein CBR-FIB-1" /note="C. briggsae CBR-FIB-1 protein; contains similarity to Pfam domain PF01269 Fibrillarin contains similarity to Interpro domains IPR000692 (Fibrillarin), IPR020813 (Fibrillarin, conserved site)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XDK4" /db_xref="InterPro:IPR000692" /db_xref="InterPro:IPR020813" /db_xref="InterPro:IPR029063" /db_xref="UniProtKB/TrEMBL:A8XDK4" /protein_id="CAP30723.1" /translation="MGLDFNRGGSGGFRGGRGGGDRGGRGGFGGGGRGGFGGGDRGGF RGGDRGGFRGGRSGGDRGGFRGGRGGGDRGGFGGRGSPRGGFGGRGSPRGGRGSPRGG RGGAGGMRGGKTVVVEPHRLGGVFIVKGKEDALATKNMVVGESVYGEKRVSVDDGAGS IEYRVWNPFRSKLAASIMGGLENTHIKPGTKLLYLGAASGTTVSHCSDVVGPEGIVYA VEFSHRSGRDLLGVAKKRPNVVPIVEDARHPHKYRMLVGMVDVIFSDVAQPDQARIVA LNAQNFLRNGGHAVISIKANCIDSTAEPEAVFAGEVNKLKEEKFKPLEQVTLEPYERD HAVVVATYRPVKGKKV" CDS join(139440..139589,139634..139918) /gene="Cbr-rps-16" /locus_tag="CBG_11589" /standard_name="CBG11589" /product="Protein CBR-RPS-16" /note="C. briggsae CBR-RPS-16 protein; contains similarity to Interpro domains IPR020574 (Ribosomal protein S9, conserved site), IPR000754 (Ribosomal protein S9)" /note="Predicted" /db_xref="GOA:A8XDK5" /db_xref="InterPro:IPR000754" /db_xref="InterPro:IPR014721" /db_xref="InterPro:IPR020568" /db_xref="InterPro:IPR020574" /db_xref="UniProtKB/TrEMBL:A8XDK5" /protein_id="CAP30724.1" /translation="MASTVQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQI LRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQS KRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR" CDS complement(join(140221..140347,140395..140501)) /gene="CBG11590" /locus_tag="CBG_11590" /standard_name="CBG11590" /product="Protein CBG11590" /note="Predicted" /db_xref="GOA:A8XDK6" /db_xref="UniProtKB/TrEMBL:A8XDK6" /protein_id="CAP30725.1" /translation="MFNSCCDLRCSRARQKRSTCTINGTGINEIQTECICSKPLQQFE VPYTRKSKHSRLDLIAGILFIFVLDMLLLSFTI" CDS complement(join(143131..143419,143465..143889)) /gene="CBG11591" /locus_tag="CBG_11591" /standard_name="CBG11591" /product="Protein CBG11591" /note="contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)" /note="Predicted" /db_xref="GOA:A8XDK7" /db_xref="UniProtKB/TrEMBL:A8XDK7" /protein_id="CAP30726.1" /translation="MNRNLIIKTIFLTILFPLINGNEKRCSGKDALSMEEDCVIIEKS KLIITGEYDDVESVKETLAKIRVIEAGVEVVGTSYEVFDFLRQVEEIKNPNGPALTFK NNKNLKSIKMENLKLLAGKEEDVLFDNDNFPIEVYENSNALQEMLHLKAAARPSLANK KCSVEFIRIVEPEVSGSGWLLYTLIATCVVLTVFVSFQTFYLVKEKRKKKKKKKSKMS KRKKKSKERSRRSRREELK" CDS complement(join(146478..146653,146698..147350, 147992..148092)) /gene="Cbr-fil-1" /locus_tag="CBG_11593" /standard_name="CBG11593" /product="Protein CBR-FIL-1" /note="C. briggsae CBR-FIL-1 protein; contains similarity to Pfam domain PF01674 Lipase (class 2) contains similarity to Interpro domain IPR002918 (Lipase, class 2)" /note="Predicted" /db_xref="GOA:A8XDK8" /db_xref="InterPro:IPR002918" /db_xref="InterPro:IPR029058" /db_xref="UniProtKB/TrEMBL:A8XDK8" /protein_id="CAP30727.2" /translation="MLRRLVFLALVCFVDSASDVAGPLTDDFQTWLATYGGKTENAPK VVNTPVVFIHGNSDSALRKSSAATGWSNSIEYFLEHGYTVAELYATSWQDTSALNAAK RTHDCTDLIRLRKFLEAVLAYTGAPKISVVSHSMGVTLARKIIKGGSVNAPDGKCDLG LPLNKKVEVMIGIAGANYGLCNCEGGSATLEKTCNRDNGLWPGDSCGLNYLDCGLFPL VWPCSGVNYSSFLMQLNSDKNKEGDYVFSMWSLSDDLIEYGNMVWGRSTSFIPTSDGK VIYHVYTHMETKELTYVDQYQMVKYKTIPTTTE" CDS complement(join(148393..148530,148588..148662, 148751..148834)) /gene="CBG11594" /locus_tag="CBG_11594" /standard_name="CBG11594" /product="Protein CBG11594" /note="contains similarity to Pfam domain PF10163 Transcription factor e(y)2 contains similarity to Interpro domain IPR018783 (Transcription factor, enhancer of yellow 2)" /note="Predicted" /db_xref="GOA:A8XDK9" /db_xref="InterPro:IPR018783" /db_xref="InterPro:IPR038212" /db_xref="UniProtKB/TrEMBL:A8XDK9" /protein_id="CAP30728.1" /translation="MDDDHIMRKKPEAIELEFQDSGESSLVKSTLLSSLQNSEWEHAV RREVKKFLEKAGDDVNAKEVFDAVKDMARREIPQDAKKKLYDQVLEFVTTVNNR" CDS join(149447..149563,149611..149755,149803..149997, 150047..150175,150220..151204,151250..151543, 151589..151823) /gene="Cbr-cdt-2" /locus_tag="CBG_11595" /standard_name="CBG11595" /product="Protein CBR-CDT-2" /note="C. briggsae CBR-CDT-2 protein; contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR001680 (WD40 repeat), IPR020472 (G-protein beta WD-40 repeat)" /note="Predicted" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR020472" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:A8XDL0" /protein_id="CAP30729.2" /translation="MDFVKLPKMQNKYLRCPSSVYEDLESKHYMMPAGETDDHDTWVT SRFSPHWNQEHILYMGDDPGNIGIFDVRKFQDRSVPLEERQLHFFPAHDGAIMDVVGV PNNESQIVSISGDSTIRCWDLNQAPRDRKSQLFFGHEGSVRSISFSPNDPNVFVTGGR DFQVKVWDMRVSTVRKMEEDCRMATITYKTAHPKNTDKKLTSAGTPKSKAKSAKLEGH KVTSVIFLDENHVASASENAASGIRVWDIRKPTKNGLEHPSRVLNVPTSNKKSYGVTC LTLDRFGNRLFASCTDSSIFEYSVPTASVSPSELENSFAYPNDNFSVNSYTGATIHNF YTQVSCSPISDTIACGSEDGRAVLWDLQDQYVYMNDLSFPDEIDKRRSKLPKWSFGGH LKQVLNVGWSSRGNYFMSCDEGGVRIWTEPRQKKSWKLFEEDDFPYPAPNHSDGFAYE LVKPFELKESDAAMTGFDSISLSPRQRADSGLVGGSPQKNRGSKRPIITSPFKSISSS PKPIRLGQSPRAKMFKMSQSPGTSPLKPTNSNVQDMGYSTPRHKRSHRRKSPFHFEHP TEQMPNFVYDNFIKKLKGESEEPEDTRKSLTKTGRKRIEDWWQTKGENVPTTGRARLP SISEFGKSACSKVLTETERNALNSPRKLLVLRTSQSPCKIVTTPVSAPTKSIPMTPRK PTDKRPTSRNLFHYFKK" CDS complement(join(152100..152386,152728..153208, 153260..153361,153623..153724,153771..153868, 153913..154029,154081..154088,154208..154281)) /gene="CBG11596" /locus_tag="CBG_11596" /standard_name="CBG11596" /product="Protein CBG11596" /note="contains similarity to Pfam domain PF00246 Zinc carboxypeptidase contains similarity to Interpro domain IPR000834 (Peptidase M14, carboxypeptidase A)" /note="Predicted" /db_xref="GOA:A8XDL1" /db_xref="InterPro:IPR000834" /db_xref="UniProtKB/TrEMBL:A8XDL1" /protein_id="CAP30730.2" /translation="MLLQLLSLSVVFISGISAEYKNYDGIYARLSWRKLEAEAGSYFI DKDSVENVKTNLASNNITYQMRDVNPQIFKVRRRRDINGAITINDVNNRYLSYDEQMQ FLNSIAQQYPNDVKLQKIGNSYEGRSLTAVRIGDDGSSKPIVWIDAGVHAREWISYNV ALYLVYTIVSQPAYQDLLNAVQLVVVPNTNPDGYEYSRTNDRMWRKTRSRFSNGRCSG ADANRNYPFFWGTQGVSHSQCSEIYCGSRPQSEPEVMALTNAIQREETRIKGYIALHS YGQEILYPWGHTMRTYPSDVQDLIQVGKAMAAAIRAVNNTDYNVVNSGDGLYPAAGAS DDWAKSRGIKYSYTIELSPIDDYTGFSLPEDRINQVCREAFQAIQVLMIEVRSKFSIR QTTSSASSTSAQSSLLLKRMRTAVRGSGRG" CDS complement(join(156761..157048,157100..157568, 158198..158286,158333..158431,158507..158565, 158614..158722)) /gene="Cbr-xbx-1" /locus_tag="CBG_11597" /standard_name="CBG11597" /product="Protein CBR-XBX-1" /note="C. briggsae CBR-XBX-1 protein; contains similarity to Pfam domain PF05783 Dynein light intermediate chain (DLIC) contains similarity to Interpro domain IPR022780 (Dynein family light intermediate chain)" /note="Predicted" /db_xref="GOA:A8XDL2" /db_xref="InterPro:IPR022780" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR040045" /db_xref="UniProtKB/TrEMBL:A8XDL2" /protein_id="CAP30731.2" /translation="MNIWDLAKQKLVENKQRAAELEQKLDDENGAVNDNYLAEVRRRH ESHIIIAGNRKCGKSSFMLNFLERKEDLRESVGLEFTYARRTRGNVKDVANLWELGGG SSVTELLSVPITAKNVETCSLIVLLDMTNLSEMWITIEKTVDTVRRLVENLERQDANL QTRMAEKSRLRLEKYESSSLKMCAPCPLPMTIVATKYDEFQNFESEKRRHLCQFLRFL AYSYGANLMMYSSRMEQFPKLVKNMISHFAFGTVCPQGYITDHNKPMFIKCGFDNLEA IGIPPGSDNFMGASSPFNLWRESFISLWPQKTGNVDVEDTKKQDPMIDPVFKEPSIDN LVEIKRKELENHIRSKRDREAAEARAAERIAKINVR" CDS complement(join(159013..159165,159215..159334, 159813..160241,160322..160396,160442..160516)) /gene="CBG11598" /locus_tag="CBG_11598" /standard_name="CBG11598" /product="Protein CBG11598" /note="contains similarity to Pfam domain PF04155 Ground-like domain contains similarity to Interpro domain IPR007284 (Ground-like domain)" /note="Predicted" /db_xref="InterPro:IPR007284" /db_xref="UniProtKB/TrEMBL:A8XDL3" /protein_id="CAP30732.1" /translation="MFLQFSLILSFLLSWKFADGWFLGMLGCQNRCQPHAGYYQNRNP YPYQSQPMMQYPLPQQNAYPTPPTSYATPAQSYPLAPQHSIPMSSYAIAKYAVVPSYA LPPAYPTPPSYPIAYPTPPAYVRPPVYVTAPPTTTTTTTTTTIPPPKCFQNSHGYKCC NRQLDQFLDEAVSQIQRPEWQRCNLQRFATQLQQQTQAIFNHSMEAIVASGHMENISQ YRGDLYCKKRSMDGKVVLIYGSVVPYSLDAGVTRPMNPEELRRANYPAKYDEIGIHDG HEENIWF" CDS complement(join(161501..161650,161699..161818, 162251..162685,163224..163304,163351..163416)) /gene="Cbr-grd-12" /locus_tag="CBG_11599" /standard_name="CBG11599" /product="Protein CBR-GRD-12" /note="C. briggsae CBR-GRD-12 protein; contains similarity to Pfam domain PF04155 Ground-like domain contains similarity to Interpro domain IPR007284 (Ground-like domain)" /note="Predicted" /db_xref="InterPro:IPR007284" /db_xref="UniProtKB/TrEMBL:A8XDL4" /protein_id="CAP30733.1" /translation="MSTLLLFLLLTCRLADGWFLGMMGGGCQNRCPTYSGYYQNRSPN PYAQQPAQYALPQTPPPNQYATAPANYGQSPQAYPVAPQHAIPMNSYAGGQYAVAPSY PTPPQYPVAYPTPPAYVRPPPPTYVRPPPVYVTIPPTTTTTTTLPPPKCFLNNQGFKC CNRLLDQYLDQVVTNMQRPSWQRCNLQRFATQLQDEAQGLFNHSMETVVASGHMENRA QYRGDLYCKKRSMDGKLVVLYGSAVPYALENGVTRPMNEDELRMANYPAKYDEIGTYD GTENIWT" CDS join(167589..167697,168078..168205,168372..168527) /gene="CBG11600" /locus_tag="CBG_11600" /standard_name="CBG11600" /product="Protein CBG11600" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XDL5" /protein_id="CAP30734.1" /translation="MTTNAMLRMRSKSISDVFATSEWDEDKEDLIPRQKQDNTLKSTL DKWKRSLNLNPRTNDQQPFDRRTSRANSFFSRPPLKMWENRRASLSSLKTQIKDRITG KSNENLATSRDGNTFQRQQRSRYEEEED" CDS complement(join(169908..170083,170517..170604)) /gene="CBG11601" /locus_tag="CBG_11601" /standard_name="CBG11601" /product="Protein CBG11601" /note="Predicted" /db_xref="GOA:A8XDL6" /db_xref="UniProtKB/TrEMBL:A8XDL6" /protein_id="CAP30735.1" /translation="MSSLYNIARLFLLISIMSTLVVSYAVMPSGEQETVLRFWKPRSK YSDGLTPNDYDTSQMDDEIEQPLSKRTNLKRLVILSARGFGKK" CDS complement(join(184267..184515,184892..185669, 185714..186027,186082..186708)) /gene="CBG11602" /locus_tag="CBG_11602" /standard_name="CBG11602" /product="Protein CBG11602" /note="contains similarity to Pfam domains PF01827 (FTH domain) (2), PF00646 (F-box domain) contains similarity to Interpro domains IPR002900 (Domain of unknown function DUF38, Caenorhabditis species), IPR001810 (F-box domain, cyclin-like)" /note="Predicted" /db_xref="InterPro:IPR001810" /db_xref="InterPro:IPR002900" /db_xref="InterPro:IPR040161" /db_xref="UniProtKB/TrEMBL:A8XDL7" /protein_id="CAP30736.2" /translation="MGHAYQWLPTKNNFSSMEFRYNSRSITVKLVSDYIHTELVYKDI GGGSMSLESKENKKLRNSLTIDDTFFNVFCEDFELIISNQRVPTISLVLRHNSYYDET RECEEVFLDFITSKLFDCLEKSLKSRKDLFQVSLVILEPVDMDQAMSIILNMDPFELS LVEISFSHRTNQVNIDGISSLIEWNQGRKLELNMYFGIMSAENLVTVKHLLKHHSTFH RVEIYYKNSDDNLDLSFDVLHQQWVCSVFKQFIFTLRNQEADQLKNEVSVSFICVKIT NSFISFQASSIDVILSGRVSQNPFIMESVLKNLECFDIQRLRKTSSGIRRCVDYIKPE PHIEKCSIEFDSINRIVTSIAQRNGLFKKVRYGDGKDIYGVHNVHCGKTTMEGEDLGR IVLNDFKINLEHQKTCLEEFFVNFSFVHAFHNRSNPNWRPRKVDNGSRKKVDYDQVAS LTSEFTEKTDQCLKSMPPLRVRTLIIGSVNQEDVFRILSHVHPEILKVIEIRYPFKVN VEKCLEVDNICQLKQWNSAEELIINSVTISTGIQEMKITHFVSVDILVENIYAEDIVY LKKVCFKELLKSSNFKKFKITFAKSTLDQSVLLSLGEPYRLAGYTRVWYFLFPNSTQY LHIFLHSERSVIFNRVEFENTPFFEPIVQNE" CDS complement(join(187314..187577,187618..187761, 187865..187924,188317..188415,188465..188599)) /gene="Cbr-hil-1" /locus_tag="CBG_11603" /standard_name="CBG11603" /product="Protein CBR-HIL-1" /note="C. briggsae CBR-HIL-1 protein; contains similarity to Pfam domain PF00538 linker histone H1 and H5 family contains similarity to Interpro domains IPR005819 (Histone H5), IPR005818 (Histone H1/H5)" /note="Predicted" /db_xref="GOA:A8XDL8" /db_xref="InterPro:IPR005818" /db_xref="InterPro:IPR005819" /db_xref="InterPro:IPR036388" /db_xref="InterPro:IPR036390" /db_xref="UniProtKB/TrEMBL:A8XDL8" /protein_id="CAP30737.2" /translation="MTTSLIHMANNLDASTEEISLNYVLLGRPHHERVQHHPSYMEMI KGAIQAIDNGKGSSKAAILKYIAQNYHVGENLPKVNNHLRTVLKKAVDSGDIEQARGH GATGSFRMGKEREKNMQIVVPVQTQPMMMLKEVRKKLENISVSKQTDKNQPSTSSVPQ KKGKPISSMKKRGAMTKKRSSKNKMAPKARSTMLKKKKATSTSKPSTSLVHKTPKAPA TTTMELRTGTRKSYV" CDS complement(join(191058..191415,192531..192672, 192954..193169,193823..193937)) /gene="CBG11604" /locus_tag="CBG_11604" /standard_name="CBG11604" /product="Protein CBG11604" /note="Predicted" /db_xref="GOA:A8XDL9" /db_xref="UniProtKB/TrEMBL:A8XDL9" /protein_id="CAP30738.1" /translation="MSRLDFPSAKPSSSVRLLFPTISRQLAVFLVLLVSVMEASGVSG IGCFVCSSFDGENKGCEDPFNSTMDLSSRDRDASAVANYNYPCWAYKKGRHGLFPADH CIKIVGYRADNESKTLVIRTCALDSGTLTADTEIVRISHCGSFKYEGHQYKGCVQSIF MNTGSCFILFILIVICLLLIFWVYQTSRFGPIAYIKSMWTPKPTKPVEPTTEVAPAVP RRSVQIAPAEIQVPPPRKSVKIPPVKVDVEANEERKEEKGRLSMPSTPVVRKDEFVYV " CDS join(206768..206838,206883..206964,207007..207147, 207196..207402,209004..209117,209937..210034, 210081..210199,210249..210461,210510..210767, 211939..212022,212074..212278,212594..212690, 212745..212900,212948..213022) /gene="Cbr-srg-54" /locus_tag="CBG_11608" /standard_name="CBG11608" /product="Protein CBR-SRG-54" /note="C. briggsae CBR-SRG-54 protein; contains similarity to Pfam domain PF00413 Matrixin contains similarity to Interpro domains IPR021190 (Peptidase M10A, matrix metallopeptidase), IPR018487 (Hemopexin/matrixin, repeat), IPR006026 (Peptidase, metallopeptidase), IPR001818 (Peptidase M10, metallopeptidase)" /note="Predicted" /db_xref="GOA:B0K083" /db_xref="InterPro:IPR000609" /db_xref="InterPro:IPR001818" /db_xref="InterPro:IPR006026" /db_xref="InterPro:IPR018487" /db_xref="InterPro:IPR021190" /db_xref="InterPro:IPR024079" /db_xref="InterPro:IPR036365" /db_xref="InterPro:IPR036375" /db_xref="UniProtKB/TrEMBL:B0K083" /protein_id="CAP30739.1" /translation="MRFLVFLETSIPGVLTLSRVLVTAYFHMQNVTGLSLVAYRFTSV LFLRSEQYWNRWYFLVPICGVVYSFAVISPWWLFNNYTGTVEIRNGTIYKNVNEKAMF TQATISPIFSTFYFLMILLIGVWTTMAIEDRGKKSQSSRHRHFVKKLTRVIVCNSILM SGNLLFLMWHIILLGIVGLVTAGSPGTNGDINQPEIQKELLEEAKVYLFKFGYMIPDA HQPVKSVQEPTAQQVHDALVRFQSAFLYYSSGTVDVPTQAKMNEWRCANNDMDRGSPI PPASKKELWTKKSLTYKIVNTPKTLSEARIRSAAHEAFAQWTRASGFKFVESTGQTPD ITITFYDVPQSNLRIAGSASKPLNSHIILDKNQEWAYKSQAPMGISLYHTLLHEIGHV LGLPHTFYRGSIMHPIFKPVLLPFGTLDIVPNVDRLAIRKIYGLSSIDHPSPTSDVAH SKCPKHVDSVVAINDQEWLLFRENKVYKLENRKFVDSGRPIQQVFPRGPQFVNATVSS GQLTLLFVERTIYGYEFDGIQFTEAQNYPKELHDRVLFYPQGAFPLNNGSVILLSGNV FATYNVNQNAPSFLNDKNRYFPNLPDDVRSGIEKRQGSTDEYYMFDEATVSDYDMNSK QVIQLENIPDFLKCV" CDS complement(join(213107..213459,214561..214609, 214670..214867,214919..215125)) /gene="CBG11609" /locus_tag="CBG_11609" /standard_name="CBG11609" /product="Protein CBG11609" /note="Predicted" /db_xref="GOA:A8XDM0" /db_xref="UniProtKB/TrEMBL:A8XDM0" /protein_id="CAP30740.2" /translation="MLQTSSISSSIPWNDAVYSNWSPILTSILLIIRITVVIAQRKYY SQPVVVILFLTVKIFMDYFMFEGVERFSSFPENINLRIVCAIEVFYVIMSNFIIYSTF YGDFKLPIKVIIQFSALNLISVIVAMVLLIVIENPMCYLTTVVALHVISTAEKKIGEK TKSQRSAESNFVFENAAEELMFPGENELNTISDIASEDECDLNLDDEIEIAQQEEAIV SAPASSREPSIFATAESGRPRRHEHRIQIMQRTLNRVASIECYHPSTIER" CDS complement(join(217498..217525,217628..217747, 217800..217858,222408..222504,222546..222823, 222871..222964,223012..223128,223177..223382, 223902..223992,224708..224808,224856..225020)) /gene="CBG27214" /locus_tag="CBG_27214" /standard_name="CBG27214" /product="Protein CBG27214" /note="contains similarity to Pfam domain PF04577 Protein of unknown function (DUF563) contains similarity to Interpro domain IPR007657 (Glycosyltransferase AER61, uncharacterised)" /note="Confirmed by transcript evidence" /db_xref="GOA:E3CU25" /db_xref="InterPro:IPR007657" /db_xref="UniProtKB/TrEMBL:E3CU25" /protein_id="CBX33081.1" /translation="MSPLFCTFILLYFFIVCESTWVKDLNLPRQLLEYHISSNKNLRD RCSEDPTCKINLNASKCFGFEDDCINENSLGFRSKFTSCDNNLNPKVAEKFYEQGDFG YLESRLVKHSICSSDDSSKSSLSCSDHLTHCIGSNIYFDFSNLKIKSSTRYRQDVIQP GQVEGNCENFDRKLLDNNLNVKGYLMSWADELQHFKSNLDFKMDKEHCDVIFEKPTVV MKLDAAVNLYHHFCDFVNLYASLHINQTFNQDIDIILWDTHPGGYNDHYYGITWKAFS RNEPFELKEFGKSLEFLNYEITENILSDQKRVCFKNVMMPLLARQRSGLFYNSPLVYG CSGSTLLKTFSQFILHRLGIKPQKAELEKVRIVILSRSTAYRRILNIKELLKSLGHLP NVTTRVVDYNERIPFLRQLNTTSQTDIFIGMHGAGLTHLLFLPDWAAIFEIISLGLKR K" CDS join(220208..220307,220355..220503,221514..221606, 221652..221783,221830..222013,222060..222163, 222208..222312) /gene="CBG11611" /locus_tag="CBG_11611" /standard_name="CBG11611" /product="Protein CBG11611" /note="Predicted" /db_xref="GOA:A8XDM2" /db_xref="UniProtKB/TrEMBL:A8XDM2" /protein_id="CAP30742.2" /translation="MPNFPPTVYYRDTYGFDDRPSESDNDSITTKSTVTVRTTYNINP GGGGGMAINPTYQHIQNRNGNNGDASKIMNYSHVSNSFHVEQLVTSKILTPNPRTILI CVLIAAASAIQLMIFAMIAVFYDGPFPWPILLCFLMLCNCLVIFIFIRCLPTRGWLIA SLIAAALSFIECTSLFFWTALLISDEEKYLESVGANDNRIVTSTRIAMYMCQMLFAPI HLIACGLIIWKLRTQLSPSDEIVNGYFLSEPELGHQKILVPIELRQIRDQSDDETENA SIGVQTGGSRNN" CDS join(223599..223790,223950..224025,224062..224156) /gene="CBG27215" /locus_tag="CBG_27215" /standard_name="CBG27215" /product="Protein CBG27215" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IIA8" /protein_id="CAR99638.1" /translation="MTILLIIVGLVLVDSTNPTNPSPAPAGVAQPLGGGSTGTNPNGQ PQHNPVNANNNANNKSDVDGISKVSLFVELFSNFSETFLIFTYITRLGGPGFSELGKN FEISEIFSNFFFVKNDFY" CDS complement(join(225871..225930,226059..226189, 226238..226295)) /gene="CBG11613" /locus_tag="CBG_11613" /standard_name="CBG11613" /product="Protein CBG11613" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XDM3" /protein_id="CAP30743.1" /translation="MPVSHPNSLDFLSATYPGTKAKRSHVTGAINFPMADVIGPNGFL SQEEVDAKIAKLGLTAGNKGSMTQLAYRAPELVNTTGN" CDS join(227022..227296,227629..227677) /gene="CBG11614" /locus_tag="CBG_11614" /standard_name="CBG11614" /product="Protein CBG11614" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XDM4" /protein_id="CAP30744.2" /translation="MGSGNGGQSGDRNSRNKRASESKGFGGQNNQGSRTKFGEFQGSI SNEQTESDPIRRKNKMASEDSGRPQKAHNVDLIQITRWAETRTPEAKDSSSNSGFGQN GFSGR" CDS join(229409..229910,230120..230317,230366..231177, 231195..232103) /gene="Cbr-haf-7" /locus_tag="CBG_11616" /standard_name="CBG11616" /product="Protein CBR-HAF-7" /note="C. briggsae CBR-HAF-7 protein; contains similarity to Pfam domains PF00664 (ABC transporter transmembrane region) , PF00005 (ABC transporter) contains similarity to Interpro domains IPR003439 (ABC transporter-like), IPR017871 (ABC transporter, conserved site), IPR001140 (ABC transporter, transmembrane domain), IPR003593 (ATPase, AAA+ type, core)" /note="Predicted" /db_xref="GOA:A8XDM5" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011527" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR036640" /db_xref="InterPro:IPR039421" /db_xref="UniProtKB/TrEMBL:A8XDM5" /protein_id="CAP30745.2" /translation="MRPLFRKLLMLIHFVLDVSITICSLGFYSPGWHFNLDDIFKAFH FAHYSYWTSPLDYVVLCLLRQVSLLIAIIIIRRGKSKKLRSWMLIYDILGILGYMVAV VKLLAFDETGTMMSYPGIYMSTGSAVFLTFSLPFAIRYTLLIKETEEVGYERLQSESR ENTNVENGSTPANGTASASESNTENKEEDDAVTKEEKEKRLPLSKHLWQIMKLCGKQW KWFTAAYSLLLIDCILNLVEPALYSQMMSTAIQMKSFDVLKRACLILAIVQFSEATCN TVRYICMQYAERLTARNIRVGLFKAILHQDISFFDENKTGQLMSRITHDSESISNSLP VYIETTTNNLFMLFGSAPIMFYCSWQLSVSTFITFPITLLMTKYYGLIVEKLSEKEND ATAVSNETVEEVLSAIRTVRSFAAEKMEYMRYTRNTDAWFKISIKSVVLGTFYNYFWA TMWNIEDVVVYLYGGYLTLQGRMAPESLLTYVFYHWRLHAALNVSYFSLVFLQLAFSS LFSDVMKTIGSSRKVIHIMNRIPELDYEVGTETPEVVGNIIFEDVEFAYPTRKTANVL NGINLSIEPGKTVALVGPSGNGKSTLVSLIQQFYSPQSGRILLDGTPIQQIDHHHYHT KIALVAQEPTLFSGTIRENILYGIEDGTDDDMMRVSEMANVHEFVSKMEKGYDTKCGE KGVQMSGGQKQRIAIARALIRNPRVLILDEATSALDAESESMVQEALNRCAKERTVLV IAHRLSTVRSADRIAVIEKGNVTEMGNHDDLMKNQDGLYYKLVHKQLNSLGTKKDEED EKPIVDFF" CDS complement(join(232289..232426,232473..232565, 232614..232649)) /gene="CBG11617" /locus_tag="CBG_11617" /standard_name="CBG11617" /product="Protein CBG11617" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XDM6" /protein_id="CAP30746.2" /translation="MEVVRNSMPIPFKNVDFIRHDFSEENEPSTSEPLVSLEDEAPEI PAKRQKLEVSLAGKGAELDVASMTYLLDTVNLYVTRAMEEADKK" CDS complement(join(233662..233815,233870..234338, 234382..235494,235544..235835,236407..236572, 241162..241683,242354..242435,243163..243330, 243381..243480,243682..243847,244565..244649, 244746..244874,245355..245753,245805..245936, 248246..248337,248574..248644,248719..248944, 249010..249182,249901..250052,251104..251207, 252284..252555,253022..253390)) /gene="Cbr-tag-333" /locus_tag="CBG_11618" /standard_name="CBG11618" /product="Protein CBR-TAG-333" /note="C. briggsae CBR-TAG-333 protein; contains similarity to Pfam domains PF02204 (Vacuolar sorting protein 9 (VPS9) domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR003123 (Vacuolar sorting protein 9), IPR000980 (SH2 motif)" /note="Predicted" /db_xref="InterPro:IPR000980" /db_xref="InterPro:IPR003123" /db_xref="InterPro:IPR036860" /db_xref="InterPro:IPR037191" /db_xref="UniProtKB/TrEMBL:A8XDM7" /protein_id="CAP30747.2" /translation="MVITSQPSTSTSCPPPTATVIPVPKPRRIVFQGATKTPVPCPRK SLLKAKSLEGEEVRLRKSLIRRDTYQPIFMEREKLQRILEVAEPELKSPKTRPCSFPI GSSPNFESSKLELSSYHNQQEEPCPPDDFTMSARAIARNRGTTTNYSSLSNERPLSAY EESAEATRQRKNRRASVAVMPIMELDYRDCIVAGSANRSSTMTRRKSDDITGREFSPD FGAIRVQVEDITSVPGVMMKEDDDEKQPNGYGETSTETITEGALNESLMSNGIRRVSD WAVPIEYASSPIAQELSQSEVEERPRPPIPAMYMNTSISSTDRGEESVYSDFVLKRNS STSSMNGKSVTLLEQIIRTHAVWYLPHMGRPEVLHLLRRMEPGNFIVRASTRENCMAL SVRLAPGAHVEIDHYIIEKLVVPLKSAADSVVPQVTTAKAVRLEGSPLTFRSLPLLIE HYCVNEDELEHRLQLPSAIRACTTTKQLLSIAVMEQEFWQSEMSLSRKKTPSTSSSRN SIASSFRSSNLTNNNNTMPKCNVTSDTSTWFMDRPEESIYDEVEPRISSKTGVGGGYY AENAKNNNSPRRSSAILLTPEMALGTAAGQQKTSKKRRSSSRASSSSNSRFATVCVGD FTSLDDWNGGKVSSKNDTDETDSGLSTHSPPSKHDRLDDVTSSPKLGFLPSSTSSTLS RPRSFLRSLLSFGSSNKEHKRKESLDIDSTPRLANCEYFTPWDTNGSNMQVRTSRSAF DITTPPTRGFFGSATPKKRNGVMPSSVYQKNASSSSSNMFDDDNYTRGWKEAAYAEMT ASPHHNNNHLTDPSMRTFRPPNYDEVALAGSPSSRSRPLAMRRERSDLGVMSNGLNLG IKNNAQRLAHHNESSPGPTTSGIGRVPMTPPANAADPQVQQNCVEELRRKRLQSANEM LSPNEIAKHPYGEVHSAHASPQIAMRRRNGFPSPSTSHNGFGRNAFAAIDRGRGGDHR LSVPNLIAVTDPLVPGSVGQSAKALKERLGGRTTDGELMVINEGLVTPVVRRKTFAPA MKTTTTSMDELGGQVMKKREALEAALSEKRRHPSDSMSSGSSDHSSLGRKKTPTPPSL VPPPTPSESELVWRRAKHSAPPQSKSSGPPQWSAVNHELKNRQQKIAKVLPTPQPRGH HNRNMSIVGGVGPSMADCRRSSDYAQLCEFAASSTEKNGMMHLDVHSKIEDDAVSVAG TVFNEPWDSNVWENLLDLAHHGDESTMGLKVSEPIQEEDSDSDRTAGGDSTCQMDSDE DDDDVEDEEIRWHSDRMRRPLPSDRVTVKGWEQDSDAGSSKFNTLDSRSKNGSIAGST LRRQPEGSMSIRSLPRALSRFSNTIGMNGMSAAASCGSIDDLPTTLPSMSPLLSGRVS RAALPRSSSTDEKIGRAVQDYVEELAQVKEGDNACFGLTLRQFVQCTTDTKETDPAVV IRNVRQFINGMKNYLVKHGEGDLHRIIDEESSRLNSNQILNIDAVLEAVLHKLLLREV KPLLYHVMIKEHSKAGALQLISQNQALVRKMNLTELGFNNPESLVTPSVSIMDQVKLL MRKMQNHYSPMKKLENLMKAVGLVLACQLNGNENENPTDAMNGGHRGLPPGDDLVRWF VYILARSSTVGCEVEAWYMWELLPQPIVTQSDASYYLTSLWSAVHVLKSAEAIRRLCE NDHRVLVSLDSSRHCCASPLLSTATLTRGTSAGLVQMISAATCDAFVKIAVPDEAVGC VRYATFSGVPMLTTSKLSRLVAHQQGITNPEEHGLYLIAEGFESCLAPTDCPILVHEQ LKKENKPHMFAYKRHEAKIAWPRAAIC" CDS join(258589..258698,258747..258845,258893..259103, 259401..259471,259607..259646) /gene="CBG11621" /locus_tag="CBG_11621" /standard_name="CBG11621" /product="Protein CBG11621" /note="Predicted" /db_xref="GOA:A8XDN0" /db_xref="UniProtKB/TrEMBL:A8XDN0" /protein_id="CAP30750.1" /translation="MVKIVTDGEYVPWYSRRAPPVFCFPCLPAYMGIWPARKCVLIIG ALLFFFGVIILLAMLLTCIAVECAGVASALIPLALILIIVGILLFHCGYAAHLLDNHG EIPIKKTTTTTTTTVMDPESHEDEIRLFENVHREEVPHVRQGYWQFDEDLSWQAASNP YPIQHTLKNCLERHPY" CDS join(259857..260067,260826..261006,261059..261140, 261182..261328,261371..261492,261776..261968, 262012..262104) /gene="CBG11622" /locus_tag="CBG_11622" /standard_name="CBG11622" /product="Protein CBG11622" /note="contains similarity to Pfam domain PF07857 CEO family (DUF1632) contains similarity to Interpro domain IPR012435 (Protein of unknown function DUF1632, TMEM144)" /note="Predicted" /db_xref="GOA:A8XDN1" /db_xref="InterPro:IPR010651" /db_xref="InterPro:IPR012435" /db_xref="UniProtKB/TrEMBL:A8XDN1" /protein_id="CAP30751.2" /translation="MLIGLLACLGACLLLGTLFVPIKSCPPTDGFATQLFMCLGSYTT SFGVYAYMEFPGIYSFAMIGGAVWSATNCFAVSIMTHVGMAMFMLFASSISCLTGWAI SRFGLFGVPPSFPMSSILNYSGIVLLIFGSAIYPFIKINVFRAVKPIDPHVQVLSMTQ LSEVNKSKHSKEDIEMSNSLKRMAAWIGTILVGLSLGVMTTPVTLLMTRHDIYPLSTE ITTSVSFHFSFFTGVILVSVVIFVLYCLLRKGKPKVPSKIVLPSMLSGVFFASAMVFF FVANEQLSPTISYPICMMAPGLVTSAWSVFYFKEISGRRNLLLLGAAYIFTLIGVLVI TVSRIVEL" CDS complement(join(262466..262532,262590..262978)) /gene="CBG27216" /locus_tag="CBG_27216" /standard_name="CBG27216" /product="Protein CBG27216" /note="contains similarity to Interpro domain IPR003388 (Reticulon)" /note="Predicted" /db_xref="GOA:B6IIA9" /db_xref="InterPro:IPR003388" /db_xref="UniProtKB/TrEMBL:B6IIA9" /protein_id="CAR99639.1" /translation="MSLISSAYKKIESQIKKTDAENPFSEILANDLSLPQEKVHAQAD VFTEHATCIANKLKKLILVESPLESIKFGLILWSLTYVASWFSGCTLAVLALLGTFSI PKVYEANQEAIDPHLATVSGHLKNVQNLIDEKLPFLRSAPVAAEEKKDQ" CDS complement(join(263014..263168,264324..264476, 266473..266553,266600..267416,268864..268935, 269794..270087,270143..270261,270486..277406, 277754..277877)) /gene="Cbr-ret-1" /locus_tag="CBG_11624" /standard_name="CBG11624" /product="Protein CBR-RET-1" /note="C. briggsae CBR-RET-1 protein ;" /note="Predicted" /db_xref="GOA:A8XDN2" /db_xref="InterPro:IPR003388" /db_xref="UniProtKB/TrEMBL:A8XDN2" /protein_id="CAP30752.2" /translation="MDSEIVTAQIDMEEVDVDLFFRKPPEITDFGFVKTFWIDSRDDD THSTLKPDQTTEEHSDPEVKLLQPLALQSLETGNDESGGSSCTDSEDVRLPEEILNAP MDDDVFEDEEVIENVETDLLFRQPMNREMELVYTISKGAAINLDELEEEDEDVDVDLW FREPTDTRFELVYTIPLMEDVSVDSSGEKLEDVPPAEELDNVVKEASLTEFTFKPIGN DEETETETLTTEVVTVLERPQDDQGAGEGSRDFIEKVKLTSNDTFDSFDDEEEAFQNA FVKPVETPETPVPEYNDDQQDDVRDVSVSEVLKNAAEQLQVIHDSLSPEDVEGETLKQ VESAPDFISENVGDAGAASATDFPETRFEISPVDNLKTTTPLETTQNVVQNLAMQETS DFAQLEDVPEGVPDVDRTLNALRNEDVFPKEPVPADASKTEDTPETEIVFDSSEINKS SDGVEETQQVEVAPIGLEDGGNIETPEVLALNQSEVEDALNSEDVVGVKTELPIADGN ISEDQPVLGLEECGDVEIAPVVDLKKEEIEEALNSEDVVTTSVLPVVVETKDNGSSDD GKTNEPFVGLEDPGEVGRPEIPQLNQSEGEEALNGEDVIGIKTELPSIPTETLVFAAT PKTEASPSDVNQSVLGLEECGDVEAAPIGLEDGGDAETHVLPVLNQSEVKDALNSEDV VGIKTGFPVVDDVIPEDQPVLGLKECGDVEIAPVVDMEKEEIQEALNTEDFVTTSTSV IPEVVETIVGGPSDDGKADQPVVALEESGEVETPEIPQLTKLEVEDALNSEDVVGIKT EIPTIPAEIFEARPSDENQSVLDLEKCGDVEAAPIGLEDGGDAETQVLPVLNKSEVKD ALNSEDVVGIKTGSLVADDVISEDQPAFGLEECSDVEIAPVVDLEKEEIQEALNTEDF VTTSTSVIPEVVETIVGGPSDDGKADQPVVALEESGEVETPEIPRLKQSEVEDALNSE DVAGTTTELSATEGIVAEIEKTENPSCVATKLEQVVVGLEDAGDEMLDLKKEEVADSL PILLSEETTQESEVAEVIQKELNDALNSEDVVGIKTVVVDTAADDPVPTSEVTSETPV ATDGLPEEVVYNELPPEVEESVTDSQTVEEDVQEKTNEGTPPSTSAQAPSTNEKYAEE SLMEKLVSIVENVLPTDAALPSEDVLHVNSESQGEEETEEPLTQQADAKKDVGDSPHQ ESENATSEPSSILDKLTSMMESVIPYGHINSESQAHEKELTEEPSTDAKEDVAETQES ETAPSESLSILDKLTSIMESVIPSENVGSESEAQGPPSQLSEDVADTPRQESETAEPS SILDKLTSMVESVLPVDSVILSEYVNQYEELRNSKSFQDLPTEEESDQTVNENAATEN QEYPADLTLSEDVASKEVETPPVDEKPEKEIDDESVLEKLASVVEDAFPNVLPSEDVL SEDHIEHLKDSATPVEDVLPVNLTRHSENDASEEPGIPEEAVSVEESDNGMNSETTKQ ESVVESLISAVKNVVLPSEDVLSEDHVDDRDQDSETPAQPASMMEKLSSMVENVLPTA LVNKTEEEVSEQQETLLVENTDDPEIVESESIVKKVVSMVESTLPAEALLPSEDVLSE DHLDGREEEPEALTSIVEKIAEMVETVIPANSEVSSDTDIKPTEEVDTEEPKETIFGN LVSMVEDVLPVHEPLDETQQHLNTENQNPSTVETLISTSDIIPPVERVGSFETEFDAE GFVAESTDPPQSEENTIIETADIIMPVDQENQLETSFDAEDFVHESIEEPVVEAKVET EQSENAEEQTTVMGELVAMAVDILPIDGEVQESEDEEKQKHPEGDSEKRTVEEPVVET TVEEIEKETSSLVGELVAMAVDILPIDGALNVAAEVTEGQVPESSESQEEKRFQHLEE SKDDMSDQSALQVATVEVETESQPVAVPETEEESAAKLEKVSNEIQNEEEPVTETTVA LQESPDPHKTTDHDYGNDYVPFGTETPSKVEFNNPEESKDEEEDFVAELNFHPIRQWK DEDVISLQSLKSLVAEVGCTTDVESVPNQENQESTLKILKVVPSEPSLMELDISNDPS VIHVPIPLMEPATKYLEEMVEWIIADAIKEVGEVEVVTESELSEMVPQESENECPVPE PLADLKLPFEDEEKTPEPEQINGEVPVKRDIPVESEPTQMIPIPQRPPRAPKVESAKP IEQPKSPKNRFGPLNIKLGRSYSEEQQKELVESLERPLTVITSSEPKPSEKGDVDALS PLSPNTLEEYEHVPMMDMQSVPHSPQEKQDDTVHVVTVTTDATPSEEKEEAKINTVLA ETKILGPGKSMEYVANEEEDGSECLDSIGDLSERTIQRFNTSIDDPSIRRDSFSSISS FGDRQKFRTAIENIRQDLLPFQSSVSQFLDPSVKELLVTNLSMDSPSDLSPNAPPVGF ENTAQYLEKLQQQQQQEDRPSAEGSIDSSGFEKVDHESLDDYGTSVEDPMQKSVFGSL TAEDDMKAGSQQDDGFVIIERNEASKGAKKMSSHHDDVIEKNYFGDDAATAKLLESPI AEEARKLVQDAVESASEYKKHAVEEGDEIGRELLDNVQQKIEQVKEPVEDALHKAYDG MGDFVHETVPQAVDDFIHEVEKKLPESPLPEKVETPEPLVDIHDTVDQVHDEIDNYLR REPTPPIVEEDENAPVDDKPHFGNQTPEEDETTFDRKGPLTIPEEVERAAAVHQHVED LDDFDPLVTANTGAAFGAAVGAAASEALTEEEMFGHQKFETVPRPPTPPKDISDEDVK PSTVNLGPAHHHSHPSSPHHSILKHHGEAWIDFKTVPPCAIGRGLYALIAFVVNIVLK VGLHAALVAGVGISAHEAYKLTKSSGVLQRKEVLDVIYWRDAKKSAIVLSLALLALFI LAKYPLLTVITYSLLLALGAAAGFR" CONTIG join(CAAC03000444.1:1..1733,gap(1175),CAAC03000445.1:1..13523,gap (10),CAAC03000446.1:1..15342,gap(927),CAAC03000447.1:1..58154,gap (1000),CAAC03000637.1:1..192923) //