LOCUS HE600963 914806 bp DNA linear CON 17-SEP-2015 DEFINITION Caenorhabditis briggsae AF16 supercontig from assembly CB4, cb25.fpc4079a. ACCESSION HE600963 CAAC03000000 CAAC02000548 VERSION HE600963.1 DBLINK BioProject:PRJNA10731 BioSample:SAMEA3138181 KEYWORDS . SOURCE Caenorhabditis briggsae ORGANISM Caenorhabditis briggsae Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 914806) AUTHORS Howe K.L. CONSRTM WormBase Consortium JOURNAL Submitted (03-OCT-2011) to the INSDC. WormBase group, European Bioinformatics Institute, Cambridge, CB10 1SA, UNITED KINGDOM. REFERENCE 2 (bases 1 to 914806) AUTHORS Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K., Durbin R., Waterston R.H. TITLE The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics JOURNAL PLoS Biol. 1(2), E45-E45(2003). PUBMED 14624247 REFERENCE 3 (bases 1 to 914806) AUTHORS Ross J.A., Koboldt D.C., Staisch J.E., Chamberlin H.M., Gupta B.P., Miller R.D., Baird S.E., Haag E.S. TITLE Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination JOURNAL PloS Genet. 7(7), E1002174-E1002174(2011). COMMENT Details of C.briggsae assembly version CB4: To improve upon the C. briggsae nuclear genome assembly CB3, 167 AF16/HK104 advanced-intercross recombinant inbred lines were successfully genotyped at 1,032 single nucleotide polymorphism (SNP) markers. The resulting data were used to estimate high-density genetic maps. Sequences were assembled by combining the physical and genetic positions of the SNPs to inform the process of ordering and orienting the cb25 supercontigs into chromosome assemblies. 37 of the cb25 fingerprint contigs were split into 100 supercontigs to resolve discrepancies between the physical and genetic orders of SNPs. 638 sequence supercontigs comprise the CB4 assembly. The total nuclear genome content decreased from cb25 to cb4 because of the removal of three supercontigs containing mitochondrial genome sequence (totaling 20.1 kbp). Assembly_name: CB4 Assembly_program: Phusion Seq_technoloy: capillary (whole-genome-shotgun) Seq_coverage: 10x Annotation details: Coding seqences below are the result of integration and manual review of the following data : computer analysis using the programs Genefinder (version 980506; P. Green, unpublished data), FGENESH (Salamov and Solovyev 2000), TWINSCAN (Korf et al. 2001), and the Ensembl annotation pipeline (Clamp et al. 2003); similarity to other proteins from BlastX analyses (http://blast.wustl.edu); sequence conservation with C. elegans using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000); individual C. briggsae GenBank submissions; and personal communications with C. briggsae researchers. tRNAs are predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964). FEATURES Location/Qualifiers source 1..914806 /organism="Caenorhabditis briggsae" /strain="AF16" /mol_type="genomic DNA" /note="supercontig cb25.fpc4079a" /db_xref="taxon:6238" CDS complement(join(4817..4926,4976..5276,5359..5711, 5905..5970,6020..6146,6237..6374,6423..6555,6600..6670)) /gene="Cbr-tag-340" /locus_tag="CBG_17942" /standard_name="CBG17942" /product="Protein CBR-TAG-340" /note="C. briggsae CBR-TAG-340 protein; contains similarity to Pfam domains PF10457 (Cholesterol-capturing domain) , PF01852 (START domain) contains similarity to Interpro domains IPR002913 (Lipid-binding START), IPR019498 (MENTAL domain)" /note="Predicted" /db_xref="GOA:A8XSM4" /db_xref="InterPro:IPR002913" /db_xref="InterPro:IPR019498" /db_xref="InterPro:IPR023393" /db_xref="UniProtKB/TrEMBL:A8XSM4" /protein_id="CAP35476.2" /translation="MSGRQPLIPPGYERSGFVSKERKRFIVFTFFDASITILLWLLCT VTRDDDWDKAFFNEINIFNPKFIHISLFDIVLLAVLRMLLLGGTYGICLVKQWYMVAF TTLASSAYILVKVLFYFNHSSSAVPPLLLIIASFTLCWSEFYLMPFQILPRERIYARR DLEGPIIRSCQQTMKRVRKTQTAVPSRVSSGVFIASDYDEFRSAAEFSSDEEARSRLL VPPDTKRLFEITLRECLDQVEELMRDSRLGGWKTLRANSPTVLQGPDNYFLVKAEFDK FPALVLFNIAWKDMLKWNTQVIEGKMIAHLDSATDLYYSVSAPAMRGYISSRDFLDLR KIKLDSTADTYTGYFVSVESNLCPNNGNPKIVRGHNFPSMIRTLKGEDGVTMFEWLMK TDLKGGLPKRLVNSGMINYFSEHVKRMNEFAETHYHCPSA" CDS join(8133..8254,8311..9238,9309..9747,12036..12562, 12612..13589,13638..13802) /gene="Cbr-nhl-2" /locus_tag="CBG_17943" /standard_name="CBG17943" /product="Protein CBR-NHL-2" /note="C. briggsae CBR-NHL-2 protein; contains similarity to Pfam domains PF00643 (B-box zinc finger) , PF01436 (NHL repeat) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR003649 (B-box, C-terminal), IPR017907 (Zinc finger, RING-type, conserved site), IPR000315 (Zinc finger, B-box), IPR001258 (NHL repeat)" /note="Predicted" /db_xref="GOA:A8XSM5" /db_xref="InterPro:IPR000315" /db_xref="InterPro:IPR001258" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR003649" /db_xref="InterPro:IPR011042" /db_xref="InterPro:IPR017907" /db_xref="InterPro:IPR027370" /db_xref="UniProtKB/TrEMBL:A8XSM5" /protein_id="CAP35477.2" /translation="MKKAADRPNSAVNGRYESPATTTNNTQNSGTPSLNGQDPARSTS SSPIFGTEPLPEDEHATCPYCQQDFRKPRVLDCLHSMCEDCIIAQLDGHLQAKSAAIE EKKRATSALDCELETPKLKERPTPPGVIRCPICAQESHVGNDVRYVHAMLLDYVSFLS YNPGPPPTRFKVRLAKIQEVEVEKMVAHHSKPCTACKSEQEAVAFCEQCSSDLCENCT TAHTVMKLFDGHVVTTFADLRSPGAHPELRQVICTTHNQSMRYLCAACETAACKQCLE IDHLNHKIIDINDLVINAIKEDVSNTVDRVEKKYNNSVADMNSLPDKTQQLNEQYELA KYRVEKHYDELRCALEENRQKVLNELEEARVRQEGNIEDMYRKSQVNEARVHDAINFT RRLLTKGNGLELVVSRKKVIQQFGNLSHAIPSHGHQVELEFLTPSKKQIDHFVHQLTG TVIGRVIQPTVKDVASASEVAADKGERGGSQTGVRPNSAANGAHQDEWGRPVYQQNPQ LGAIGGERKKNTQNGTNGVRSIGDNAFRDWPPSSHPPDSTSPPPTNGPPALLPSQPSA PIVSHPQVSNLPNAAALAAVAAGMRPDLVALANHMDLNALTNGTGNQNQLPEAMFPMW PNRPGIGSVPTPTTTGLSSNASAAYMQQKLAAVQLQAMSRLNPQMLSLATLRNNQPLQ EILAMNAMSSLTMNPQLSNAAAAALAATAVVNSTSAPNIADTSLQNANSQRVTDLKVH SVFGTSQQGSTIRELHCPSGFCLSDTDDILIADTNNHRVVVCGPPHPWKIGRPGTDDG QLCFPRKVIALRGDIVRYVVLDKGGDGKTRAQIFEARGEFVKRLNMMALVPRGGIEVS AAAATPNGQLLLVDTAGFVYSIDVDAPRVTFWFDASSQLGEASDVAMFDNLIYITDFK HHCVQVYTSEGLISVIPDYAVKTKISGKFIRKMGEPSQTPYPIGIDVSKAGEVLVADT HGNHLHVVVFSPEGQHIHSFTHNEFRLSRCVGLRIAKSGHIVTLCKHNHTLFVFKPLI LPNGIPVPTPVPNAASIINKFQ" assembly_gap 10331..11264 /estimated_length=934 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS 15396..15443 /gene="CBG25961" /locus_tag="CBG_25961" /standard_name="CBG25961" /product="Protein CBG25961" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKR1" /protein_id="CAS00491.1" /translation="MLTTFIFPQVCAHYH" CDS join(15861..15969,16021..16372,16417..16494,16538..16720, 16768..16906) /gene="CBG17944" /locus_tag="CBG_17944" /standard_name="CBG17944" /product="Protein CBG17944" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSM6" /protein_id="CAP35478.2" /translation="MSSNNQELQYPLPPIPQARSISDLVRVEVEEPPRKMRMMFGEAQ IVSLRSDGLRSRMMRTMMKKTQKQKSDSLDQNSSSNTLNEVIDEVASGQIGFTGSESE IPEPTACSSSSFESVEVGTSSSDESNSEESKKTCPTSGNRSYHPPKQFHAASTMITHK RKWTYQTSCHINAEEQKDDNQIGYAPDPFLPMPRGRRIEISTATRMNYAAQRVDNRKF RGQAKAYQSVRETEDRDSITCEKCKMKYFSESRKIQERITYISSAHEEVLPTVVFDCP VCKEATNAAF" CDS join(17893..18257,18731..18883,18929..19304,19353..19564, 19611..19965) /gene="CBG17945" /locus_tag="CBG_17945" /standard_name="CBG17945" /product="Protein CBG17945" /note="contains similarity to Pfam domain PF00307 Calponin homology (CH) domain contains similarity to Interpro domain IPR001715 (Calponin homology domain)" /note="Predicted" /db_xref="InterPro:IPR001715" /db_xref="InterPro:IPR036872" /db_xref="UniProtKB/TrEMBL:A8XSM7" /protein_id="CAP35479.2" /translation="MSIFTRPLNRLTKTSEVVPPMNEQNITHRKKLSTVSTSLQGDDG AAYFSPIHVRIQVFLGFVAASPRNCYTRSNIVPLRRRVYEEIDGAAMSSRSGSTPIEQ KALEIRRTQSKKETVQHREESRALPTVLIEQNAVETNAKTKKSRPSTSSLASVFRSRA SSPMETVRKVFGRSSSKQPKELTVPSPSSTSLEPVTSKNEQRLMEELEIVRNQLSQAQ LQISEQNKKMRQVQTVCSSQQCEPLRMTDEATMTEKVAEKVDNMEKMDKENLHPDIIC LESDVNVSSRIQSLKDEVAALKKENSEQKEDFRKTRKDFILILKEAVLRKDEAERKLE TISRSVSDDDDWVTLMTQHKHTLRRNVLLGWVQKTLEQYSDQLTVSNFSSDWTDCRAF CALLFDLFPETMPDVTISPIVGDCVNRCRRSFQRLEIPFEKRALGIASTSSPGADSGA DEDSSSACSVIAGLTDWRYIMNTVFVIYQRGVLGKT" CDS complement(join(21207..21341,21388..21480)) /gene="CBG25962" /locus_tag="CBG_25962" /standard_name="CBG25962" /product="Protein CBG25962" /note="contains similarity to Interpro domain IPR005047 (7TM GPCR, serpentine receptor class xa (Srxa))" /note="Predicted" /db_xref="GOA:B6IKR2" /db_xref="InterPro:IPR005047" /db_xref="UniProtKB/TrEMBL:B6IKR2" /protein_id="CAS00492.1" /translation="MTIQRLVILLFPTKNKLFFEKRLIIYCSIIMLVSFIILLIPYLS DCAVSFHAYPIDFASSCGLGRHPVSLIRIEA" CDS complement(join(24604..24766,24815..24975,25026..25259, 25387..25497)) /gene="CBG17947" /locus_tag="CBG_17947" /standard_name="CBG17947" /product="Protein CBG17947" /note="contains similarity to Pfam domain PF09430 Protein of unknown function (DUF2012) contains similarity to Interpro domain IPR019008 (Domain of unknown function DUF2012)" /note="Predicted" /db_xref="GOA:A8XSM8" /db_xref="InterPro:IPR019008" /db_xref="InterPro:IPR039163" /db_xref="UniProtKB/TrEMBL:A8XSM8" /protein_id="CAP35480.2" /translation="MVLKLYILLCSLALLSLATEEVSTTEQTSTLFSVEGELALPASR NCAKWSAGARVHLNHGQHIGFVRQDCTFRVDFVPSGTYIVQIENTDFVFEPIRVDITS KGKMRARKLTILQPNNVNTLPYPLRLSARGPARYFRKREEWRITDMLFSPMVLMLVIP LVVMLILPKMTANDPELKREMENMQMPKVDMPDVGEMMANFFGGPAPAKKKAVTSGSG QRRK" CDS complement(join(25956..26033,26155..26255,26303..26522, 26717..26827)) /gene="Cbr-arx-6" /locus_tag="CBG_17948" /standard_name="CBG17948" /product="Protein CBR-ARX-6" /note="C. briggsae CBR-ARX-6 protein; contains similarity to Interpro domain IPR008384 (ARP23 complex 20kDa subunit)" /note="Predicted" /db_xref="GOA:A8XSM9" /db_xref="InterPro:IPR008384" /db_xref="InterPro:IPR034666" /db_xref="UniProtKB/TrEMBL:A8XSM9" /protein_id="CAP35481.1" /translation="MSATLQPYLEAVRHTLEAALCLEQFSSQVVERHNKPEVEVQTSK ELLMTPVVVARNKQERVLIEPSVNSVRISIAIKQSDEIEKILCHKFTRFMCQRADNFF VLRRKPLPGYDISFLITASHTEAMFKHKLVDFLLHFMQEIDKEISEMKLSLNARARVS AEEFLKRFN" CDS join(27157..27292,27338..27447,27548..27715) /gene="CBG17949" /locus_tag="CBG_17949" /standard_name="CBG17949" /product="Protein CBG17949" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSN0" /protein_id="CAP35482.1" /translation="MASNVQYEILSLVEGEKNNKVVSILENKYKSPAKRVTLNERFGV LEKGYMLHATEPTETKNAADVYLFVHEKNLISKKEFIQNYLAKNPIVDLSEENVEEDK ENVSSRKSTTPAVSKKETTSEDYVRDIAKSILKAI" CDS join(27975..28069,28125..28444,28497..28597,28667..28768, 28823..29304,29555..29640,29709..29905,29954..30052, 30097..30214,30260..30387) /gene="Cbr-tag-19" /locus_tag="CBG_17950" /standard_name="CBG17950" /product="Protein CBR-TAG-19" /note="C. briggsae CBR-TAG-19 protein; contains similarity to Pfam domain PF00282 Pyridoxal-dependent decarboxylase conserved domain contains similarity to Interpro domains IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR010977 (Aromatic-L-amino-acid decarboxylase)" /note="Predicted" /db_xref="GOA:A8XSN1" /db_xref="InterPro:IPR002129" /db_xref="InterPro:IPR010977" /db_xref="InterPro:IPR015421" /db_xref="InterPro:IPR015424" /db_xref="UniProtKB/TrEMBL:A8XSN1" /protein_id="CAP35483.2" /translation="MGAEVPALIACLAISLCFNIGFIVYLFIKHKNRNISEYKKVENP DVESFQRPANPQRSPEKEKEPKEPALKSAINEKRSAEQILKPEHKPPVKEVQQRSDRQ RLQEPVGRDEFVKCMNVVVQFINEYFDESHKQPVIPEHDVNSTRIHVKGPEKPEEFGE ILKDLKEIVVPNICHTHHPRYHAKFAGKSLADIVGSTISAALGHDVNSSPIIDSIERI ICKWLSSAMGIPQIKSHLNEPRDPIGTLFYTPRDIYIAVIRHAIEKAEMTNENSPKSE KEKPKFSDYVVYCSDDSQIPLEEACINTKVRLRKVITYDKESSAMTAANLLKQMVKDK ERGLIPLVIIANYGSAYVAANDEIWELVKISRNSLITEVHSVHIVCSSLFPYSGRISV VWSYKIHYGEHPIRLWILIRLYGIRSIREAVKRKVILGNAFSERLTHHPEFFEMSHPN EHGITVFQYNNKNVKDRKEDINKMTSMFHNYLILSSTLKFSLFTYHEKVLIKAVINYG RCNLSIMEESVSTLLNSVEKFEEALKKKKKAVSETPRVEFCELIGGSPNETTDVTQPD DIDEKKKKK" CDS complement(join(33739..34164,34213..34614)) /gene="CBG17952" /locus_tag="CBG_17952" /standard_name="CBG17952" /product="Protein CBG17952" /note="contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domain IPR004296 (Protein of unknown function DUF236)" /note="Predicted" /db_xref="InterPro:IPR004296" /db_xref="UniProtKB/TrEMBL:A8XSN2" /protein_id="CAP35484.1" /translation="MTTAEPPPPPPPAPEPLQKKVEMTPGLLNNPKSKAEKVEAPKAS DGQEVKKGEEGKEKKEKEQEKKSEKTDDKKSKKEGEKSKKTTTEEGKEKGGKNEKKKK EEPKKVDPKGKDAFKKPEDENAVVPKKDPNYQTLCGLNNDLFGPDKNPKKQFKAPTKV EKADVKDPQYETLNGLGEDLFKDEKKDDDGKKKEFKPPEKVAKADAKDPQYETLNEVD KGIFNNNNEEKKSKKEEVEKKKDGEKKEEKEEKKEEKDEEKKEDKKEEKVKSEEKKN" CDS join(35594..35671,35714..35934,35984..36066,36111..36239, 36290..36417,36702..37001,37048..37203) /gene="CBG17953" /locus_tag="CBG_17953" /standard_name="CBG17953" /product="Protein CBG17953" /note="contains similarity to Pfam domains PF05148 (Hypothetical methyltransferase) , PF08241 (Methyltransferase domain) contains similarity to Interpro domains IPR013216 (Methyltransferase type 11), IPR007823 (Methyltransferase-related)" /note="Predicted" /db_xref="GOA:A8XSN3" /db_xref="InterPro:IPR013216" /db_xref="InterPro:IPR029063" /db_xref="InterPro:IPR032863" /db_xref="UniProtKB/TrEMBL:A8XSN3" /protein_id="CAP35485.1" /translation="MSISSGNVEQEYVHSIYSRLATYQQKEHKPSSPRIWPRVRQFVD QQTIGSVILDVGCGEAKYTSQKSHVIGFDTCSEVLSSSKKENIDLCLADAVSIPIRDN SVDAILNVSVIHHLATTARRRQVLQECSRCLRDGGQMLIYAWAFEQPNGKFAAQDILV PWNMHETAIGGRLPKVKFHVNTTKEQRVIAASIPINISDGSVAQRWFSGVLNKVTSLA DQLPYFSRRCPSSPSYSDQSTPTGSVSSPIQKLPSAAPQFLPTTNSLISGIKRWSPML GRRLASLLVPVEEQFAEELSQVIMRESVTEAMATLREVTFYRFYHVFKEGELADLVDS VESLKVVSTSFEHGNWCVIAEKVPANLIRP" CDS join(39337..39426,39480..39600,39647..39739,40087..40220, 40422..40613,40743..41246) /gene="CBG17955" /locus_tag="CBG_17955" /standard_name="CBG17955" /product="Protein CBG17955" /note="contains similarity to Pfam domain PF00201 UDP-glucoronosyl and UDP-glucosyl transferase contains similarity to Interpro domain IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)" /note="Predicted" /db_xref="GOA:A8XSN4" /db_xref="InterPro:IPR002213" /db_xref="UniProtKB/TrEMBL:A8XSN4" /protein_id="CAP35486.2" /translation="MKIFALLSLLLGAVASYKYVIFVPNMANSQAQFCAREAEVLVNG GHNVTMLFVNHLSDFKTDVKIPKGVKSYHLDAFIEGITNQIIEKEQSAMIFKDAGLKS SIKRSALNNVYFRMSSDAETQIFREELNDPSFPHTMDIGAKCPLEFKTISETGKGIIA FSFGSVEKRLDHEMPLEWKNAILDAFSSLPDYQFVMRYLGTDLNDRLPKNEAISAGVP LVTIALFGDQPKNAQIAKKHGFAVNIQKGTISKETIVEALKEVIENDSFVSNLLFILF QFFPIFSYKQKVSRLSAMVRAQPMKPAERLLKWSQFVAEFKTLDNLEPSGQRLNFFQY HSLDVIGFLFTVIFLVFYIFYRILRALVRCCCCRKSHEKKKTE" assembly_gap 41825..41879 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(42929..43019,43077..43258,43396..43692,43744..44007) /gene="CBG17956" /locus_tag="CBG_17956" /standard_name="CBG17956" /product="Protein CBG17956" /note="contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)" /note="Predicted" /db_xref="GOA:A8XSN5" /db_xref="InterPro:IPR000242" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="InterPro:IPR029021" /db_xref="UniProtKB/TrEMBL:A8XSN5" /protein_id="CAP35487.2" /translation="MERRERAKEKEKEQWSGEEMAKKMIASGAFDSGLIASAFKELRN EKPPLNSCISFKNNMHKIRAPDFPIADDKIVKLTHALDNFICAAKVAEEVHSVVLALM PLECSVTLQQIFPILSGTFANHGKMFLNNKKVDSTVAMTAYTLEILPDGCSNSLFTTV YHLHNWKQKRGLDNVGDLVSTVEKVLTTNENTVLMSMNGMGRAGTMLALFTSMLHVQK GKEVNTKEIVDKLRGERCGLIENAEQYGTVYRAMALWFKNKSTDEEVQKKVNEFAPCV Q" CDS complement(join(44995..45160,45204..45380,45431..45624, 45673..46299,46347..46756,46801..47308,47360..47548)) /gene="Cbr-coq-8" /locus_tag="CBG_17957" /standard_name="CBG17957" /product="Protein CBR-COQ-8" /note="C. briggsae CBR-COQ-8 protein; contains similarity to Pfam domain PF03109 ABC1 family contains similarity to Interpro domain IPR004147 (ABC-1)" /note="Predicted" /db_xref="GOA:A8XSN6" /db_xref="InterPro:IPR004147" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR034646" /db_xref="UniProtKB/TrEMBL:A8XSN6" /protein_id="CAP35488.1" /translation="MTTKRPPASTLKWCQQEIGPICDGICMAVRSQLGYDGRRIEKQI RRKALQTVVMGGQDVDPLKEPNKTNDSVLSTALPSTNETLQRARVVAAGIETFAKLMS QGIYPGSAGFTISESGERQYVKQSSPIQSTLVANLISTAEKISKGAISVPFPLPTLTK LGTWAISNPTAELPIPSQIRAAVPAIGRVEVLIQSILGVTTARQITGTVVTEPRKLKL EGVTDQSSGFTEATALPDAQPLDKTLTREEADFLIKAAKSVQDDNAETAIYGDKKTKP EVYRPELPKNFEVNLEMGNVHTLTRSNESSVPATRIGRLATFGQLAFGLLGGATAEVT RRAFGIGKKLQEEGVPKNPFLSEANADRIVATLCRVRGAALKLGQMLSIQDSSTVPPA LLEIFERVRQSADFMPLKQVHRQMRDAFGDDWRDKFEQFDDKPFACASIGQVHKATLK DGRIVAVKVQYPGVAEGIDSDIDNLVSVLSVGGIFPKGMFLDAFVAVARRELKQECDY EREARAMRKFRELIADWEDVYVPEVIDELSSSRVLTTELVYGKPVDACVKEPQVVRDY IAGKFIELCLKEIFLWRFMQTDPNWSNFFLGKHPKTGEPRLVLLDFGASRAYGKKFVD IYMNIIKAAYDGDKKKIIDFSREIGFLTGYETAVMEEAHVESVMIMGETLASNHPYDF ANQDVTKRIQKLIPVMLEHRLTSPPEEIYSLHRKLSGCYLLAAKLKATVSCGGLFHEI HDNYVYGEDGKDINID" CDS complement(join(47689..47889,47934..48021,48086..48211, 48260..48459,48508..48612)) /gene="CBG17958" /locus_tag="CBG_17958" /standard_name="CBG17958" /product="Protein CBG17958" /note="contains similarity to Pfam domain PF03981 Ubiquinol-cytochrome C chaperone contains similarity to Interpro domains IPR021150 (Ubiquinol-cytochrome c chaperone/UPF0174), IPR007129 (Ubiquinol-cytochrome c chaperone, CBP3)" /note="Predicted" /db_xref="GOA:A8XSN7" /db_xref="InterPro:IPR007129" /db_xref="InterPro:IPR021150" /db_xref="UniProtKB/TrEMBL:A8XSN7" /protein_id="CAP35489.2" /translation="MLVTRHIVRRLSASYRLLETSKKRTVEDMTQEMLQMPVSKVPPT IQRFTSSLKMKFKSDGLDQSVKSILDRASAQLYYNCADNYDFRKLCEAFGLGDYMSSW YKLTLMHTWMVLMRLHSEFDGKAYMRLQRGLLSTMWLDIDHSKELNQIMTGKNDMKHM HGLHLQTFFEYDEGFLHDDRVLAGAIWRCLYMNREVDPVHLLKVVTYMRSTVAWLETQ DTNQILVEGISEWKQLRSTSS" CDS join(49013..49168,49222..49326,49370..49439,49488..49794, 49842..50001) /gene="CBG17959" /locus_tag="CBG_17959" /standard_name="CBG17959" /product="Protein CBG17959" /note="contains similarity to Pfam domain PF00085 Thioredoxin contains similarity to Interpro domain IPR013766 (Thioredoxin domain)" /note="Predicted" /db_xref="GOA:A8XSN8" /db_xref="InterPro:IPR013766" /db_xref="InterPro:IPR036249" /db_xref="InterPro:IPR037463" /db_xref="UniProtKB/TrEMBL:A8XSN8" /protein_id="CAP35490.1" /translation="MLLPRLDEVRRAWTAFHFFNTLLALAFPVIRSTFLCDFVFATEG NEQCEIDSREREILMFLLIILAWKGRKATNWMHYVNNIFLFSKIAGMFLFIRADILAG IIYILACLIITVVFPEPVYNGPEQVTYFQGEQLYEELTKNRNTIWIIQFFTTWSPECR HVSPVFAELSQKFTLPNMKFGKLDIGRWAKEGERFRVNAHPMSRQLPTICVFIDAKEI SRRPLVNDSRRAIPFVFSEENCILAFDLVNLLNEQKQKKVGKTSKQD" CDS complement(join(50171..50251,50298..50495,50544..50615, 50661..50967,51014..51159,51208..51267)) /gene="CBG17960" /locus_tag="CBG_17960" /standard_name="CBG17960" /product="Protein CBG17960" /note="contains similarity to Pfam domain PF00248 Aldo/keto reductase family contains similarity to Interpro domains IPR001395 (Aldo/keto reductase), IPR020471 (Aldo/keto reductase subgroup), IPR023210 (NADP-dependent oxidoreductase domain)" /note="Predicted" /db_xref="GOA:A8XSN9" /db_xref="InterPro:IPR020471" /db_xref="InterPro:IPR023210" /db_xref="InterPro:IPR036812" /db_xref="UniProtKB/TrEMBL:A8XSN9" /protein_id="CAP35491.1" /translation="MDHRSYVKGKMPLIGMGTWQIRNEETLYKVIDEGLKEGYRFIDT AQVYGNEAAIGRILEKVLPQHNLKREDIWITSKLGPANAGLKEARKSIEKSLKDLKVD YLDLMLIHWPGSSLKSENPKNKALRQESWDVMCAMMNEGKLKAIGVSNFEISHLEELK KSSTVVPAVNQVEYHPHFHQDELVKFCRDNNIHFQAYSSLGSPTYREDLSKETLVVEL AQKYKVEIPVLLLGFAFCQGISVLPRTTKPEHVVSNFKVTKLAISPSDIERLLALKVE HKTCWDPRVVV" CDS complement(join(51685..51749,51798..51960,52350..52909, 52969..53014,53066..53338)) /gene="CBG17961" /locus_tag="CBG_17961" /standard_name="CBG17961" /product="Protein CBG17961" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSP0" /protein_id="CAP35492.2" /translation="MNSDTEFFDADAMSDSIGVNKDPDSSYHSPQLVLSPEESSYLES YNNHPLSKEELVLPDSHIRGKHHMKSVPNLCLVLPCTLSNDDFNEICRAAYGLYHKFK KSKEDLPQMKVELSANVEMEDDDLAVGSSLRNRLEKEIKNDLSTTNNPHLELISFLEG KCKRMRRIVRLFKSQRHIQKLRPIDAQQHWNTEKMTREEHDKRFTRWDAAMAEACADD AEEKLAVLEEGGFVGIRGDEAEFCWEMCSGLENKVNKLLEYNLDEIIEDKFYYGRFSL ADVLEMKSVDNDKFFEKKLTLPKGTLYRQLLLNLSGLAYYDVVGDFWDSDKLNDREVE KRLFKGIPFDHQGNPFNNERRHLEDNHQNVPSNF" CDS complement(join(53575..53667,53719..53868,53920..54033, 54077..54142)) /gene="CBG17962" /locus_tag="CBG_17962" /standard_name="CBG17962" /product="Protein CBG17962" /note="contains similarity to Pfam domain PF04979 Protein phosphatase inhibitor 2 (IPP-2) contains similarity to Interpro domain IPR007062 (Protein phosphatase inhibitor 2 (IPP-2))" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSP1" /protein_id="CAP35493.1" /translation="MISTHWFPCRLIALFVLLSLHIWFTAFGQWISRARRATFNEHNL LLTYQPRAYTHGHLFVPDPPTPCGFSKNPTESCTDSEFRQARDAHYKDEFHRAVNTSA EKKFIQQEKVETMRIEFDQTTSPSSSPSRSDKSPNFHI" CDS complement(join(54639..54854,54979..55084,55134..55409, 55713..56050,56168..56306,56413..56502,56806..56899, 56977..57427)) /gene="Cbr-ced-4" /locus_tag="CBG_17963" /standard_name="CBG17963" /product="Protein CBR-CED-4" /note="C. briggsae CBR-CED-4 protein; contains similarity to Pfam domains PF00931 (NB-ARC domain) , PF00619 (Caspase recruitment domain) contains similarity to Interpro domains IPR016854 (Apoptosis regulator, Ced-4), IPR002182 (NB-ARC), IPR001315 (Caspase Recruitment)" /note="Predicted" /db_xref="GOA:Q60Z52" /db_xref="InterPro:IPR001315" /db_xref="InterPro:IPR002182" /db_xref="InterPro:IPR011029" /db_xref="InterPro:IPR016854" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR036388" /db_xref="InterPro:IPR036390" /db_xref="UniProtKB/Swiss-Prot:Q60Z52" /protein_id="CAP35494.3" /translation="MLCEIECRALNAAHTMLIQDFEPRDALTYLEGEKIFTEDHSDLI SNMPTRLERIANFLRAYRRQASELAPLIDFFEYNNQNHLKDFLDEYLWFATHQPDKLR PVVLVPKFSRQMLDRKLLLGNVPKQMNCFSREFHVDRVIEKLDEMCDLESFFLFLHGR SGSGKSVIASQALSKSDQLIGINYDSVVWLKDSGTTPKATFDLFTDLLLMLKRARVVS DTDDSHNMPDFINRVLSRSEDDLLNFPSVEHVTSVVLKRMIANALIDRPNTLFVLDDV VQEDTIRWAQELRLRCLITTRDVEISNAASPECEFIEVTPLESYECFELLESYGMPVP AIERDEDILHKTIDLTSGNPAALMMIFKSCEPKTFEKMAQLNSKLETRGLSAIECITP YCYKSLSSSLQRCVEVLSDEDRSALAFAVIMPPGIDIPVKIWSCVIPVDICSNEEDQL DDEVADRLKRLSKRGALLSGKRSPVLTYKIDHVIHLFLKHVVDVQTIANGISILEQRL HELGNNNTPTPERHMPSKFRRTSAGDMFPKVEDSVIRPEDYSKFMQIHRTFYDSLKKF TSQ" CDS complement(join(57631..57726,57775..58295,58348..58449, 58504..58572,58650..58707)) /gene="CBG17964" /locus_tag="CBG_17964" /standard_name="CBG17964" /product="Protein CBG17964" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSP3" /protein_id="CAP35495.2" /translation="MQEADIAGPSHSYDVEFDEDFIRNAGHMSIDKLLEELDLLKRDT HPLLLTERRKIGKQRQVQDTRILRHRARAEDRAKHEYVTREREYTAQFEVRVRELEEE ANGRVDEMEKYNIQEYGVIDITKAGGTQQSFDTNKKTLRGRGGGNLIEPATYFNSHPP TKIPEFNITLAFENARIRGDLFAIRNRLPSPVPGVKKRNLNVTIIKPKLIFENRTFKH GEDVIVWCKTFNEIHAKLDIVNEKVIGLKGINGWDSRQLTATTEDLEEGRVIITKLKG KDKLL" assembly_gap 59416..63904 /estimated_length=4489 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(64604..64740,64794..64882,64960..65125,65170..65280, 65357..65508,65554..65740,65785..66059,66155..66515, 66567..66862,66936..67093) /gene="CBG17965" /locus_tag="CBG_17965" /standard_name="CBG17965" /product="Protein CBG17965" /note="contains similarity to Interpro domains IPR002625 (Smr protein/MutS2 C-terminal), IPR008431 (Cyclic nucleotide phosphodiesterase)" /note="Predicted" /db_xref="GOA:A8XSP4" /db_xref="InterPro:IPR002625" /db_xref="InterPro:IPR008431" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR036063" /db_xref="UniProtKB/TrEMBL:A8XSP4" /protein_id="CAP35496.1" /translation="MAPKKHAQCFKFDTDNHNIRKCVKEGHRVFLILRGAPGSGKTTL AKSFVDIAVSEELKSALICAQTVMASQIAKKVREAIRNDVPLIIVDDEHVDRLTIKTL ALIATTESYECFVAEPDTLWKYNAQICKEKTQRSDTIDMISKKIATIQAATLRWDHIV AGGESNLEVYNFYDNPSSSDSYIAPKISSLTVSQEFSLAPTPKMTSTRSCGTTVCMEA IIHEMADIDDEFPHCGFFLGEEKTVKAKDMTNISMVERCEETEDVRFSATGERSVHPW PPLVKGTSDDVAFSLLRCTFGEIDLAVLRHNLQIFGYEIAFEIFKILEGTSENDLLPS DDRFLFEELEQIESYTIPNIEDELEARQSEREMLQFHEDEEADTGNDAQIAYLVFLEL NGSDELSQNQDDFNISRLSRAFPDCPDVKQVYEAGMKDYETVREMLRAMEYQEFPLEP IVPQKSSTTYSGTVASSSPVRSAKPMKTKNNDNHFLKKQPNRKSHQPLKEVQREALEM RNNIGKNVSNQASLVAKQFSYSATSESATRRREQLAIEIGRIDQKIRCAHNNPWNLDL HYMSVDGAIELVLEAIEAVEYLIKYSPEKFPRRITVVTGSGNNSKDGAKIKPQVISML KSRRISFGMLNDGCIEVKL" CDS join(70402..70426,71295..71731,71801..71883,71926..72079) /gene="CBG17966" /locus_tag="CBG_17966" /standard_name="CBG17966" /product="Protein CBG17966" /note="contains similarity to Interpro domain IPR001304 (C-type lectin)" /note="Predicted" /db_xref="InterPro:IPR001304" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="UniProtKB/TrEMBL:A8XSP5" /protein_id="CAP35497.2" /translation="MRKCPKTILTSIVFDDDTHSSSSSDESSYSSGHHGGHGSHGHHG NHGNHGNHGNHGNHGGRPPRPPPRPTSKCEDGWTRVKRQGGGWCVKIFEGQTNQPQSE AICNSNGATLSGVESQEERQTVAELGRTYMTTRTAWKQGSLRFGIQRGDVNSPFFATD GFSNGVAGITWTGGEPRTGEPRFGWYTCVLMWLQVPGGGPVEQRRDAEFFSKVCHQTW SGAFRGFVCGKKAK" assembly_gap 73050..73580 /estimated_length=531 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(74639..74678,74725..75131,75207..75437) /gene="CBG17967" /locus_tag="CBG_17967" /standard_name="CBG17967" /product="Protein CBG17967" /note="contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domain IPR001304 (C-type lectin)" /note="Predicted" /db_xref="InterPro:IPR001304" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="UniProtKB/TrEMBL:A8XSP6" /protein_id="CAP35498.1" /translation="MRFLVIFGVLFVTVSSIVFDDDSSSGSHESSYSGGRGGNHGHNG NHGNHGGRPPRPNRPPVTRRPTRCEAGWTRVNRQSGGWCVKVFAGMTNQPQAESLCAQ HGARLSAVESHEERETIAELGRVVMTTTSAWKFGTLRTGVVRDSNNSPFHSTDGNAKD LNAVRWSGGEPINGLNRNNNCGMMWIWVPGGRRVDQRQHGLFFSMVCHISWNDRFRGY VCGKKAQ" CDS join(76323..76362,76406..76785,76865..76963) /gene="CBG17968" /locus_tag="CBG_17968" /standard_name="CBG17968" /product="Protein CBG17968" /note="Predicted" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="UniProtKB/TrEMBL:A8XSP7" /protein_id="CAP35499.2" /translation="MRFLVIFGVLFVTVNSIVFDDDSSSGSHESSYYSGGRGGHHGGR PPKHQPVTERPETKCEPGWTRVHRQSGGWCVKVFVGMTNQPQAELLCAQHGARLSAVE NHEERETIAELGRVMMTTTSAWKFGTLRTGIKRDTLHSPFYITDGNAKGLNAVKWSGG EPNQGSYGLEEN" CDS complement(join(77181..77335,77379..77474,77520..77680, 77950..78016,78073..78177,78224..78314)) /gene="Cbr-acbp-7" /locus_tag="CBG_17969" /standard_name="CBG17969" /product="Protein CBR-ACBP-7" /note="C. briggsae CBR-ACBP-7 protein; contains similarity to Pfam domain PF00887 Acyl CoA binding protein contains similarity to Interpro domain IPR000582 (Acyl-CoA-binding protein, ACBP)" /note="Predicted" /db_xref="GOA:A8XSP8" /db_xref="InterPro:IPR000582" /db_xref="InterPro:IPR014352" /db_xref="InterPro:IPR035984" /db_xref="UniProtKB/TrEMBL:A8XSP8" /protein_id="CAP35500.1" /translation="MQSMWRTLILSTILLVSITSACNKNGEGCLLMRNVLRDPLRLST WKVSSLNRAINQLQAYQQLFHEDKRSSSNDYSSQFSEMMRRRRRMESALDDFKRIRAR FVQRKVLKFQFELFTKFENHTRNIWGFYQQALVGDVNVPKLNYMEIDEGEKSWMWKWI NGNEKWHAWNKCRGLSKEEASTQFVEAVQKLKLEIYQLLSQWKLEISNDPKEVESNTG DTPYTE" CDS 87097..87312 /gene="Cbr-nspd-9" /locus_tag="CBG_17970" /standard_name="CBG17970" /product="Protein CBR-NSPD-9" /note="C. briggsae CBR-NSPD-9 protein ;" /note="Predicted" /db_xref="InterPro:IPR008498" /db_xref="UniProtKB/TrEMBL:A8XSP9" /protein_id="CAP35501.1" /translation="MADKSAYMSAGGYGSGYMGSNASSSGYAREDYASGGSGASNNNN QGGSGGSTNPGAQVFKARTDQSCYLGP" CDS join(87901..88008,88057..88683) /gene="CBG17971" /locus_tag="CBG_17971" /standard_name="CBG17971" /product="Protein CBG17971" /note="contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)" /note="Predicted" /db_xref="InterPro:IPR003582" /db_xref="UniProtKB/TrEMBL:A8XSQ0" /protein_id="CAP35502.1" /translation="MALLIFLVSVIFSHTSEVLATDPVDADCKTLLPDGTYVWSERAT QCENIYRDKECERQYGDGSIVFPGGSSSRPRNCWMLEGTDGLYQPGSGAWTPNDIVKR GSVDVCPKLCGYCCKATEYTCEWTIPAGYTPEIEKICKEVTWDKCQSSIAYRPIYAKY CPNFCGFCRINGCIDAIPSCSLDPSVCTSSPAFASQYCKATCGYCEQCKDNRTDCAAL VAGQNFCNTAAISTVRMYCGQTCGIC" CDS complement(join(88735..88885,88929..89104,89153..89197)) /gene="CBG17972" /locus_tag="CBG_17972" /standard_name="CBG17972" /product="Protein CBG17972" /note="contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domain IPR000535 (Major sperm protein)" /note="Predicted" /db_xref="GOA:A8XSQ1" /db_xref="InterPro:IPR000535" /db_xref="InterPro:IPR008962" /db_xref="InterPro:IPR013783" /db_xref="UniProtKB/TrEMBL:A8XSQ1" /protein_id="CAP35503.1" /translation="MTEKKQFIATEPCDKIKFVAESQDEQKTTLKITNQSEMKQAFKV KCTRNDLFRIKPSTGILDYNQTITVILIYKGGQTKPPTEKQQFGVYHIPAPENCTCEG AWAEHYGPPQGEHKLRVVWNE" CDS complement(join(91723..92179,92221..92763,92811..92921, 92969..93165,93218..93541)) /gene="CBG17973" /locus_tag="CBG_17973" /standard_name="CBG17973" /product="Protein CBG17973" /note="contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8XSQ2" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/TrEMBL:A8XSQ2" /protein_id="CAP35504.1" /translation="MCPCVLIDKLRNVFGKKKRTSKETSQSSNSATSPVEPGEDKKKE KSKKSKKSNKSRKSEKSEKSRGKSKGKSKKARSNIKSPNNPGSPSDHNTPSSRCSRPD QKITEELNGQVIHNKPDPKNFLLRVLQSERPDLIGPDSKLDPGELKTLDTHLLKKGEL RDGIDIQLGDTCKTNDSLMLGSNGEVEIKSLYAYGRFGSVYIVIRKNEDSKNGEELLD SMILKTSRRMYASARMEHEIKVLKYLQDREKNRPTHIVPIISHGTAGGTPYFLMPALD ANLEKIRQEIGHKMPWVDAFYIGQEALIGIKECHDLSIIHRDVKPTNLLLAIGNIKAW VLSDLGDSCPVGKSKILSPPDALTIPYISRYGHVATQKPMKATIAMDIESWFYLFLDL FIVLPWKNKVEEDETLAAKNAFWENLSKFFEKNCSKLPPQILPIAQIVVDSSIEKPYS QLTAILRDGFNKNNKTSPWKPDWIEKRPKKEQAPTRPKTTGKGEKTKSGMASSSTGTS QTTESVSKNQKTSGKQSEPKSVSKSAVKSVTKKVN" CDS join(93784..93804,94151..94421,94467..94555,94600..94716, 94768..94911) /gene="CBG17974" /locus_tag="CBG_17974" /standard_name="CBG17974" /product="Protein CBG17974" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSQ3" /protein_id="CAP35505.1" /translation="MNDNFFKHQCANANYPSEDWCEKEYNHYKRFCTHCEKNPCISFT HDIDCYCEPYDNIWRRYGYETARWCQKYELTCDEKTRRDKGNELIQLMQDRIKVHYRC LHLYNLPQVICDPFSTRFDWYRCMKFLFDCELISDWDDDDYDDAGVITDEKPGKSSPS LPPISKPKSSLPEPSISDQAETLLKGGLSSQQLKENAAIREKEKQLEAVLKKP" CDS join(101298..101406,101451..101578,101628..102477, 102533..102660) /gene="CBG17976" /locus_tag="CBG_17976" /standard_name="CBG17976" /product="Protein CBG17976" /note="contains similarity to Pfam domain PF01925 Sulfite exporter TauE/SafE contains similarity to Interpro domains IPR002781 (Protein of unknown function DUF81), IPR018073 (Proteinase inhibitor I25, cystatin, conserved site)" /note="Predicted" /db_xref="GOA:A8XSQ4" /db_xref="InterPro:IPR002781" /db_xref="UniProtKB/TrEMBL:A8XSQ4" /protein_id="CAP35506.1" /translation="MTSIRPMELEKTPYTHEEPLTCGGKVKRWCKKYLLEGQHLDEDQ AYKLTNLPENPTFGDFIFIKYRKFVAMLIPFLLIHTVWWSAAIRHNLFQYYHDYWHMP VTMALGSFVGGMTSEGSGAVAFPVMTLALHIKPEIARDFSLMIQSIGMTSALVCVLFM RVKFEHRAVIIGCLGAVPGFIVGVHWIDPLFSGPQKKMLFVSIWTAFAFALGILNAQK KRSTFREIPEFCAWKGWVLFFTGIIGGIFDAFAGSGIDICIFSVITLLFRVTEKTATP TTVVLKGTIAVFGFYYRAVMMGDIDIMAWRYFAVSVPVSAATGPIGSFLGSHLHRQVV AGFVYVLEAIALVGFLFTRPAWQLIAVGGCIILGGFVFFSALSKAGSILMNRIEARQQ KEAQKNGITSAY" CDS join(104196..104313,104356..104483,104667..104863, 104875..104879,104919..105560,106125..106270) /gene="CBG17977" /locus_tag="CBG_17977" /standard_name="CBG17977" /product="Protein CBG17977" /note="contains similarity to Pfam domain PF01925 Sulfite exporter TauE/SafE contains similarity to Interpro domain IPR002781 (Protein of unknown function DUF81)" /note="Predicted" /db_xref="GOA:A8XSQ5" /db_xref="InterPro:IPR002781" /db_xref="UniProtKB/TrEMBL:A8XSQ5" /protein_id="CAP35507.2" /translation="MVQLYSENVKSTVMNQKPTDSKMPAGQTIKIWCKKYLLEGQSLD AEQAEKVEQLPENPTINDLVFIKYRKWIAMLLPMTFIHIIWWSIAIRYDLFQYYLEYW HMPVVMILGSIIGGMTSEGAGAVAFPVMTLALHIDPTIARDFALMMCRMTSALVCVLF MRVKFETRAVILGCLGAVPGFVIGVHWIDPIFNGPQKKMLFVSIWTAFALSLGILNAQ KKRPTFREIPEFCAWKGWVLFFTGIIGGIFDAFAGSGIDICIFSVITLLFRVTEKTAT PTTVVLKGTIAVFGFYYRAVMMGDIDIMAWRYFSVTVPISACGGPIGSFLGSHLHRQL IASFVYILEAIALLGFLFTKPGWQLMTVGAVIIIGCFVFFSIVSKFGSILLERLDPQE AKEKELRKLEEQKTETGQQ" CDS join(107608..107697,107746..107875,107921..108066, 108231..108306,108349..108479) /gene="Cbr-arl-6" /locus_tag="CBG_17978" /standard_name="CBG17978" /product="Protein CBR-ARL-6" /note="C. briggsae CBR-ARL-6 protein; contains similarity to Pfam domains PF00071 (Ras family) , PF09439 (Signal recognition particle receptor beta subunit) , PF04670 (Gtr1/RagA G protein conserved region) , PF00009 (Elongation factor Tu GTP binding domain) , PF00025 (ADP-ribosylation factor family) , PF08477 (Miro-like protein) , PF00503 (G-protein alpha subunit) contains similarity to Interpro domains IPR006687 (Small GTPase superfamily, SAR1-type), IPR000795 (Protein synthesis factor, GTP-binding), IPR013684 (Mitochondrial Rho-like), IPR005225 (Small GTP-binding protein domain), IPR001806 (Small GTPase superfamily), IPR003579 (Small GTPase superfamily, Rab type), IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR019009 (Signal recognition particle receptor, beta subunit), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR006762 (Gtr1/RagA G protein), IPR024156 (Small GTPase superfamily, ARF type)" /note="Predicted" /db_xref="GOA:Q60Z38" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006689" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR041839" /db_xref="UniProtKB/Swiss-Prot:Q60Z38" /protein_id="CAP35508.1" /translation="MGFLSSLSNLFGMGKKDVNIVVVGLDNSGKTTILNQLKTPETRS QQIVPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRVRM ELLKDELWLVLDHKDVASRGIPVVILANKMDIPGAMTCADITAALGLNLHRSGTWSIH STCALTGDGLDKAMQQLSSEIQKYLETRKS" CDS join(109106..109156,109202..109402,109454..109935, 109982..110036,110082..110234) /gene="CBG17979" /locus_tag="CBG_17979" /standard_name="CBG17979" /product="Protein CBG17979" /note="contains similarity to Interpro domain IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:A8XSQ7" /db_xref="InterPro:IPR013087" /db_xref="UniProtKB/TrEMBL:A8XSQ7" /protein_id="CAP35509.1" /translation="MEKAKIPKLSQRTNAPLTHENGPPANLQVSLPPTMYPGQQMTHP GMSRNFSTCYNPRPHPTIPSYPPPPNHLLVTQPALSFEQALIKSMDVISAQATYFAPL AQSAMTMSSALIKLQEENIAERKRKEDEHKKERMRAEEKHSETLSMFLDKIAMMFDSA ARKVDVSLPDPISVNTGPSTSDCSNASEILNPQEVQSGPPSMQTRSKKLTIEKSQVIK RASSSMGQPVMNPKESDENHVAIKRPRKHVYIDQTLVEKGHSYDKTLNKFSNYKCDNC ETSFNSEKKLIYHFHTFHDECLPEHQENQRKKSKSKK" CDS join(111792..111922,112376..112451,112502..112801, 112853..112946,113171..113342,114812..114854) /gene="Cbr-pal-1" /locus_tag="CBG_17980" /standard_name="CBG17980" /product="Protein CBR-PAL-1" /note="C. briggsae CBR-PAL-1 protein; contains similarity to Pfam domain PF00046 Homeobox domain contains similarity to Interpro domains IPR017970 (Homeobox, conserved site), IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:A8XSQ8" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="UniProtKB/Swiss-Prot:A8XSQ8" /protein_id="CAP35510.1" /translation="MSVDVKSEFSENDSSSSSSSPTNVNNVAWPNYQMMPFMNAQPLR DKMLQPSFDPQLYGRWPQMGEAGFYGHSDIYSTFALPQLSTNGQILPTAEVVEVKPPL SNGSSSSDSGMYPSPNDLTPFPSTSSGIGASSSSSDLQAAAAAAANYQMRAATCYQQS VWPFMDYQQPFPWKMPLGSAGKERRASSDTKSLPTGPGTNNVRVRTADKYRMVYSDYQ RLELEKEFHTSAFITSDRKSQLSTMLSLTERQIKIWFQNRRAKDRRDKQKIRL" CDS complement(join(115256..115396,115441..115571, 115619..115725,115772..115967,116507..116606)) /gene="CBG17981" /locus_tag="CBG_17981" /standard_name="CBG17981" /product="Protein CBG17981" /note="contains similarity to Pfam domains PF06325 (Ribosomal protein L11 methyltransferase (PrmA)) , PF12847 (Methyltransferase domain) , PF02384 (N-6 DNA Methylase) , PF03602 (Conserved hypothetical protein 95) , PF02353 (Mycolic acid cyclopropane synthetase) , PF01170 (Putative RNA methylase family UPF0020) , PF05175 (Methyltransferase small domain) , PF09445 (RNA cap guanine-N2 methyltransferase) , PF01135 (Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)) , PF08241 (Methyltransferase domain) , PF01209 (ubiE/COQ5 methyltransferase family) contains similarity to Interpro domains IPR004033 (UbiE/COQ5 methyltransferase), IPR003333 (Mycolic acid cyclopropane synthase), IPR004398 (RNA methyltransferase, RsmD), IPR007848 (Methyltransferase small), IPR019012 (RNA cap guanine-N2 methyltransferase), IPR000682 (Protein-L-isoaspartate(D-aspartate) O-methyltransferase), IPR000241 (Putative RNA methylase), IPR013216 (Methyltransferase type 11), IPR002052 (DNA methylase, N-6 adenine-specific, conserved site), IPR010456 (Ribosomal L11 methyltransferase, PrmA), IPR003356 (DNA methylase, adenine-specific)" /note="Predicted" /db_xref="GOA:A8XSQ9" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR007848" /db_xref="InterPro:IPR029063" /db_xref="UniProtKB/TrEMBL:A8XSQ9" /protein_id="CAP35511.2" /translation="MPDKKVLWMLDELEGFEKPKIKLEQYATSSELAVSMMEMIDETV GLDGVKLVDIGCGCGMLMTTAATLYDLKSVVGIDIDEDALKICAKNLETADIQENCDL LQMDVLDPEAKLPQGEFDVAVINPPFGTKNNAGIDMKFVKIGIELVRPGGSVFSLHKS STRNYILKTANKWEDLEDVEACAQMRWKLSATYKFHKEKSVDIDVDLIHFKKTNPDKK EEKRSE" CDS complement(join(117052..117192,117278..117531, 117580..117761,117808..117934,117981..118159, 118245..118354,118710..119442,119492..119907, 119960..120128,120305..120459,120582..120677)) /gene="Cbr-tag-325" /locus_tag="CBG_17982" /standard_name="CBG17982" /product="Protein CBR-TAG-325" /note="C. briggsae CBR-TAG-325 protein; contains similarity to Pfam domains PF00620 (RhoGAP domain) , PF00169 (PH domain) , PF00397 (WW domain) contains similarity to Interpro domains IPR001849 (Pleckstrin homology domain), IPR015767 (Rho GTPase activating), IPR023827 (Peptidase S8, subtilisin, Asp-active site), IPR001202 (WW/Rsp5/WWP), IPR000198 (Rho GTPase-activating protein domain)" /note="Predicted" /db_xref="GOA:A8XSR0" /db_xref="InterPro:IPR000198" /db_xref="InterPro:IPR001202" /db_xref="InterPro:IPR001849" /db_xref="InterPro:IPR008936" /db_xref="InterPro:IPR011993" /db_xref="InterPro:IPR036020" /db_xref="UniProtKB/TrEMBL:A8XSR0" /protein_id="CAP35512.2" /translation="MSTAVQSTADVTAFGAGPAGSRASDLIQFQEIMSESNDSSSSSS QTNVSATAASALPHGNQDQNFADDSSHVYTNIKEIDELNSRPVPPSPRPDAQPRRDLL NGWFEYETDVGRTFFYNKETGRSQWIPPRLIRTPKQVQEFLLATKTNLDATFSFQGSS SSEEQKENTLTESQEENRKSQSVEDEEVFDEICDDGEDESLLETSSRPLPVPTFSEGE EEDKAEQSLPNVPAHVIDDGFSDSDIEEEEQIPTSSRKTSGSSGAMMPHVHMSTFQST FPRAREFDKEKHTPYMIPPDANESSKTPSSIRVRRPSPSSLRSVSFQNKCTVLKNVPM PQVLPMSSASFEHPHSHSTPDRPSYAEEFSDPTPSSRCEERRGSSEGREPVRTIRCGD MERSEKEEPLEKLSKPKKREWIMNYMYLTTAHLILYKDQKSAEVHMKMLYNKQLSEWF QKHGKHYDAPQGVWDLRGATISWYQDDRDVQRKKQRKYIQLELCNTKKYLLRGSNDTE VSEWYKSLEEVVAKLPAPGSSTQPMIDVTNSVARNPSYIGSTRPLSHALIPISRSMRR RDHPMSQSAIESMSTSAAVDESRPSKETILEKLRRFFRTRPTVESLKEKGIYKPEPVF GSTLFAICQHENSLVPKFIRVITEVIESKGLETDGIYRVSGNLSAVQKIRCQADQDNY RALVAEEDIHVLTGALKLFFRELSEPLFPISLHKEYTAAMQMPNATSRFKKFEELLNR LPNENRETLKMLLRHLNRVASHSSQNRMQQHNLAIVFGPTLFHNGDGAVNSASKNKKA GKKTKSSKKDEPQPTPIQSNSHLAFSMIMQSQIVQYLLESANKFDILKAPVNIGR" CDS complement(join(122033..122209,122434..122583, 122624..123571,123789..124175,124219..124435, 124506..124625,124669..124787)) /gene="CBG17983" /locus_tag="CBG_17983" /standard_name="CBG17983" /product="Protein CBG17983" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSR1" /protein_id="CAP35513.2" /translation="MPDDDEAKKKMRVRIERDSYSVLLSFKDGATPRQVEQRMDDTLG YTYNSKYHLAGVHDMFQILNEHKQVQLIPEGKFKIIATEENHELVALIAKQKDKKRNK GKGGKGGRRAVTSMGHNRNGFGQGLTLRSSPKLTAGMRLSSSMTKTFYPKASSNGFNV SRPSSSAANTRTSAFPKQGNRLNNFSNRQFMFDVAPKPLVAPKKYPPQIPPSPQQRPL MRPSTSAASVSSMNNSILDSSWSDATLAPSSPKINPASRIPSIKEFTDNAKKMMLRMY PESIHLSEMTDRYCQEYGVTIEPLQIFSKSWMLLVKTTFKEFLQINEGQVSMKEDWYR KYGSVLSRSLPVKPIIIVPKPNPPEPSKPFLPSNQGFRYQIPTRPKSPEVIQKMRGSI NKFIHYILSLTFSGLTVGNRLALHTPEKPPGISLKASMKSPPKHEVFFSDPQKVTRVQ HIEPVSSGNTLYDQHQYDARHLQNLKHLPKSKEMVRDIQSSLSGKGSAPLQPLHGFCE NSDQSLLKKNQKKASKQLGNFNDLPPIIVTRAPDVHVIIHTSPVRTSTQVRSSSLPSP PTNPLRTRSTGVSSRLFGRALGDIKKQNETKQISTYQRNELDTVAYDAPITVTYTRND PSPSKNDSDDGWGSPLPSERKFMAPNPVKTTSKMILPPMSKGSCKDQARSRSVSVCKS VSSQDGTMLEKALDATLPDDGFW" assembly_gap 127382..127391 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(128078..128119,128181..128534, 128586..128822,128868..129944,129992..130347, 130397..130899,130950..131434,131483..131602, 131651..132290,132338..132725,132774..133022, 133070..133207,133267..133357)) /gene="Cbr-mel-28" /locus_tag="CBG_17984" /standard_name="CBG17984" /product="Protein CBR-MEL-28" /note="C. briggsae CBR-MEL-28 protein; contains similarity to Interpro domain IPR000637 (HMG-I/HMG-Y, DNA-binding, conserved site)" /note="Predicted" /db_xref="GOA:A8XSR2" /db_xref="InterPro:IPR000637" /db_xref="UniProtKB/TrEMBL:A8XSR2" /protein_id="CAP35514.1" /translation="MDNENSSIFQPYSQYDCWRGEKQIILKTSIGCQLPYIVNFKRNT VQIFNIEWERITHSYVFPEGCQLVDVDYFPTEDGKLGILVAVEDPRQSWGSENFVVAL AAKEDQPMMTVTHSADIPTKITVIKTLFSCADMSRRANREVLKLYHRLMTWQHVVAIG CKDSQCHLARLTPVEDSASLVVPIHNDRRNLINLMSAFIEGSVLQYTQNDGSYRNYPT AAVYISALALMPRSRTLLVGLSMGGILAASLNPSNQMIFLELRHERLIRKIAPLEPED DPDKFEYFIAAVDASPRHPVMIQLWRGSFKTLEQVEEDFKYDNPFYLTCLEHKIPFGE KWISVNPIVTEREHWVTTKRRAGHDESALNVSQTFGATSNRNSVLLTYERKKMLTSED DPNGLPEYIVEGAIFDIDAWYYKRVPGKVSTDGTVLRQCPFLSTIKSNIPSEDVNDIG ILAMNATDVSRFSSMISDADQLFYPSALTYERVFVAKNSKIEWMKIQNIQDTIINKCS SKLAFYLNSAEDVSGIIIAAGMVRKNILSGSPNSSAADINYSQLSSDQKVLLNLIVYY GKVEALCGIVSNSDVSETLKTEIADWALHEAVDFKRTISDKMVAIFQGRSHDLSPLAQ DAITQGIKLFRVVYEYLKTCSKFLKSSRLHNMAHSMKCMRNHTKLIYQFFVFDIIPVN QERQKTMRDMHSKRKIAAIRNSSSLPIQALIRNMDRLAPNAQFWDGITHSEWYPPTPV DLLESLLCVNLPERMKRELVVQYVVDWVRASGNELNDKQIAMEVIKIMTNQMLEVDLE KIYYVLDQEKNALTDNKAAEEVRALGEKVFSMQREEVSYEKLWGGGVPITVTINKQDL KKFEQRMKLQMEKARLPVLDPESEMLYQVYLFENEKFNAMSSEAIRSNKLLSMFMPGM YKKHFRSLQKSSKEKEIEQTVKTMFERQKMLDEVVEDEDDMVAVVRDQQKRKRKSGTF GGDDDDCSSVSSASFVPPTAKKIQLWKKASEPAVASIPESPDNKNSSITSLVHSGDPH ENNEINMLIATPARYYKRPAFEDDDVNEFLSPTRGKEPPLPAQNSILKTAKAVQTGNR GRIRFHESVRKPAEERIEKNEDSAPSKGLTLNFAILEDEEEEETMTTRRSRTMETEKE VEREEEVMEEEEEESHEEDVEQEKEEDECVESEKTFEEQEDFEVLEDTSAPEKMNSLE DTFEPREDDVMPPVDETYKEEEEKEEEEEKDKEEKQEESNGEEVSDGILRSMEVQSDD DVDPIQPEIVEEEVGEDVEKVQEHQEEVGKEEEEQKTEEVQENNDVVEEEKQEELHEN PVSVKPKTSDAPVEASSEVQEPEDDRPPSRTTRTKTVQKTPSVKTNVDTEDGPPSTRL RTRSCSIKRDDVASETPRSRRTSVRRSASRTSSVSEQLETVVPSGKTRKSTGRAASVE HPTGSDVSGTPRRRGRPRLSSLTTTPKETRKRENSTEQDDTETPNKRRRGTSRATPMK VIPEDEPSISTANQQEATESSVVTPKKGRGRPRKELANVEEELEEPEEPAVNTSLRRS TRRSQQQ" CDS join(136559..136734,136784..136865,136918..137099, 137142..137267,137310..137408,137453..137510, 137681..137769,137814..137871,138042..138130, 138175..138222,138330..138618) /gene="CBG17985" /locus_tag="CBG_17985" /standard_name="CBG17985" /product="Protein CBG17985" /note="contains similarity to Interpro domain IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8XSR3" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/TrEMBL:A8XSR3" /protein_id="CAP35515.2" /translation="MKAESNNANGGCVLKLEVAILKKLTGKPHVCKFISAARLTDFTY VIMTLLGKSLNKIVKRVGRQLTVSAQVRIAANILFCLKQIHDIGFIHRDLKPANMALG YKTNSEECRFFHVLDFGLSRQYLVPHSDQPSKFMMRKPRERSLFRGTTRYCSIRMHDR AEQGRVDDLWSMLYLLAELRGPLPWSSQNDKRIVGELKRLHTDEDVLQNCPMEFLEIA KHLRSLTYFHRPDYHKIFMLLLTIVGELKRLHTDEDVLQNCPMEFLEIAKHLRSLTYF HRPDYHKIFMLLLTIVGELKRLHTDEDVLQNCPMEFLDIAKHLRSLTYFHRPDYHKIF MLPSDTPKSVPRSPTQKVGSRERKSREKLSKEDVKTARKMSDETTNDNKVKTSREKTN HQSAEKSSSSDPKAGEQKQEYMKLLPFDLDFFNSDPIGF" assembly_gap 139215..139625 /estimated_length=411 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(139724..139841,139891..140043,140090..140238, 140284..140468,140517..140659,140710..140823, 140869..141166,144107..144207,144254..144393, 144441..144554,144600..144779) /gene="CBG17986" /locus_tag="CBG_17986" /standard_name="CBG17986" /product="Protein CBG17986" /note="contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR017907 (Zinc finger, RING-type, conserved site), IPR018957 (Zinc finger, C3HC4 RING-type)" /note="Predicted" /db_xref="GOA:A8XSR4" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR017907" /db_xref="InterPro:IPR018957" /db_xref="UniProtKB/TrEMBL:A8XSR4" /protein_id="CAP35516.1" /translation="MSLLPAYSWFQCTQFFQNKMMLTPQLFHDIIRPCPACETPYDIR LHAPHVLPCSHTFCMMCLSKHEQRKKKKCPICDAKYSKFAPNLALMEVSERIDERRVF LESDTRQCDECDNRVKTSMMRRCETCEKQLMTRTEYKLECIICLECCVNSHNGHNFIR FNTAPSSSIESSPMLQQRARHPSTSSTVSVHFRHPSTVSGRLSTTKGLINTIKSWSFR SSNELSFVLSPPSKLAFSEEDIVMQCQSPFYENETAQSQHQILRNRMSSSRFLCYDPN NPDNISVDSVFVESPQSLPNNLTPRMSSSCRSSCIQHKNDSGVMMTPSSSSSPATPSV VTSHPHFSRSATSLRIPSPATTSKIQGIQNFFGSSRVPRNNRMQMGVADIIRTFCYTS DHKNCQCATIVPPSCGSGAVNYTFCHLLDDVVLPPPEIVVHDEHSVSAVVPRFFQEAP FDVIKPSFLYLLALFTKNGSECTSFGHIEAYHRQQDRCLLRIRVQMPKIDYTGTDNYY YDDRSALESQFSRDLFGIAENVTFWNEVTIRRDEKILNGTLAFATVMKSTRVDYSL" assembly_gap 142354..143426 /estimated_length=1073 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(145058..145127,145171..145305,145838..145942, 145984..146217,146260..146361,146406..146557) /gene="CBG17987" /locus_tag="CBG_17987" /standard_name="CBG17987" /product="Protein CBG17987" /note="contains similarity to Pfam domain PF00057 Low-density lipoprotein receptor domain class A contains similarity to Interpro domains IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR013032 (EGF-like region, conserved site)" /note="Predicted" /db_xref="InterPro:IPR002172" /db_xref="InterPro:IPR013032" /db_xref="InterPro:IPR036055" /db_xref="UniProtKB/TrEMBL:A8XSR5" /protein_id="CAP35517.1" /translation="MLSLLLIASSIIDSSFGQLPGPNDYPGRIGGRCGLFQFDCDPRA RTPLCIPLAAVRDCTPDCPNMSDEWCGQGTILCDAGVGQHRCGKCVRPQDMVNLCLDR KWQHLCAYQGTYKCAKTMNCVFAKWLMDGKDDCGDSSDEDVCARGLVSCAGSEPTTTT VLEPVTSTEKPKEKKKKIILKDRCELGEFRCLDGECLDVSRVLDGHEDCSDASDENYC EMHDGVCNTAARCSFQRDVGAFGCGCPKGFVRNPTGICEIEENRMKI" CDS complement(join(146732..146885,147484..147571, 147602..147709,148621..148779,149014..149217, 149261..149500,149545..149955,150007..150154, 151777..152082,152127..152320,152384..152682, 152730..153457,153816..153937,153985..154117, 156911..157110,157381..157453)) /gene="CBG17988" /locus_tag="CBG_17988" /standard_name="CBG17988" /product="Protein CBG17988" /note="contains similarity to Pfam domains PF07645 (Calcium-binding EGF domain) (6), PF06119 (Nidogen-like) (2), PF12947 (EGF domain) contains similarity to Interpro domains IPR018097 (EGF-like calcium-binding, conserved site), IPR000152 (EGF-type aspartate/asparagine hydroxylation site), IPR006210 (Epidermal growth factor-like), IPR024731 (EGF domain, merozoite surface protein 1-like), IPR003886 (Nidogen, extracellular domain), IPR001881 (EGF-like calcium-binding), IPR013032 (EGF-like region, conserved site)" /note="Predicted" /db_xref="GOA:A8XSR6" /db_xref="InterPro:IPR000152" /db_xref="InterPro:IPR000742" /db_xref="InterPro:IPR001881" /db_xref="InterPro:IPR003886" /db_xref="InterPro:IPR009030" /db_xref="InterPro:IPR013032" /db_xref="InterPro:IPR018097" /db_xref="InterPro:IPR024731" /db_xref="UniProtKB/TrEMBL:A8XSR6" /protein_id="CAP35518.2" /translation="MRGDGILVVLLIHLSLVFGLHPFYGHQRYRRQILDEPNQQIDLN ITVPYIFSARLYTYGANRGDIPIHGRQEIYKLENPIHFMGNVYDSVYISRDGSVGFTE KRQKPSALPVEEPTIAVFWQPATLGNVWYRETSDVNIMNLAHNEVNIQYRYGSQFRVR SVVLITWEGVKDPIVPESEGNTFQLALIIGDSMTFAHFIYSKLNYNTNAIAGFSTGQS SYSLPDSATHDAILLSEKSDIGIPGEWLFRVDGNQIYLCGAGFKGLECIESCAPSQWF NDCSKSCHCDGGDSCDQENGRCPNGKCSPGWTSEPICDEDLDECEMGIDNCPNEQPDC LNTPGSFLCLCFEYDEEKQKCKNSKPAPPSAPIPVDVIPMHPTFTRKPAPAKVTVSPR NRFKSTTARTTQAITTHSSTEIPTTTREKTMSTPLLTTEVVTRTTTTPTVVTTPSACS RCDQNAKCSNGICACSKGFTGDGFRCYDVDECQIPEDVCGDHSICSNTIGNFECTCHG GYRFEEGKCQDVDECRESPKICGDPNKGTRCINKDGSFECLCKDGYEGDPSSECRDVD ECKNGDACGPNSQCTNTEGGYECECLPGFERIAEGAHCTDRDECAVEPCHPAATCSNT RGSYKCECIDGFVGDGKTCHETILYPISNDSTVIPRSWDSNTAIPLAKEITIFGKKYS KIYLSTNGIISFEEPLQGLIDHADTLKKPAIFALHAQFDYIRDGLVAYTYINDTDAVT LPLLMRSSIGIQTSMGIENFHTKRLHIFTFDRVRQSGSENFNSFQIVLAESDKDFTIL SLIYEKVQARGPMTGISTPSRFLMLPNKRLTSGSNVGQPGKWMFRVDVADLQTCPPGR VGEPFCDRECAAGHYGINCVSTCHCDGSVACDVVTGMCPGALCRAGWEGSSCDQDIDE CGMNLVTCADGSQCVNTRGGYRCDCKKGFVPVGKECKQIDQCLSRFSVPCSRNAECVK SEGVNPKCVCRKGYHGDGFRCTTRENVKSAGGNRLVSDLTHHLMEVDDLPGANTTDSS VPSSSENPFVMKNWVPDRVGETTPSPQRPKFVTVQTPPLFYTAPPIKPKMNDKDMDLM DGEKPRAEESGSFPCKKNLISVLYIIGSAMLFIWIVLIILVCGVMYMNKRRRRNVERQ QYAAMRGWKGGQFHSRSSRMITTSNPNVIYGQTPRITPYESY" CDS join(160915..160941,160989..161196,161241..161534, 161587..161966,162017..162450,162591..163083, 163124..163373,163424..163560,163608..163808) /gene="CBG17990" /locus_tag="CBG_17990" /standard_name="CBG17990" /product="Protein CBG17990" /note="Predicted" /db_xref="GOA:A8XSR7" /db_xref="InterPro:IPR024970" /db_xref="UniProtKB/TrEMBL:A8XSR7" /protein_id="CAP35519.1" /translation="MRKQNRPNQTTRKQMQNLTVELFSRDKNARRQLLDEALSVSPPS VPEPVAVVVPETPPPVPTPEPIQELVQVLLAPEPCDPIPRKPRSPRKSISTRPKPKVS DGKLKGKPEAPKEKPATENVVNEEPTATPEPEPNSVTSEETIDSAPQRISAEEIVDNN EYAEKEVPAVSETVVQEEPPVSVPEDPVPTTVTPVEEEYVTPPPLQRIPYSAQQSNLA NIRAVAESMNIAAIRSPPHQQSYQPQEPMSFAACVRKQPSIESMSVSPSPYCKFDGKT SPFNTGANGGFSNPGGFGGFNRDPNKNVNPFANRKKFNYEYDSAPSNNSHSPFNNNRF YNDRAEQMRDVSDSFSSLNSKPNGFMTRGIPRESASSGMLPNWYKGRSFSTASSHYPY SQRSNSSGHFSGFSKPSHSTTLNIPSHGHVEDLDGFLASGTQSNPFLSKRSDLNLKKE RWARMKAKKRMLRRPIEDEFYEDPDEEEEILRGNGVMLNQIVQQSSTGHYEDADLLRK YRRDVAFVKERVLSAIDGNIDGIRDLRFLLASVQTYGNIDGECMMAELGLNEFSLFSG IIEKYHAIVGPWQTDNESQRRRASRHAFETHRIPLQHSIATVSKRKLVEEILGRVEPS IACHQGVKVGLYSDSCNEKTRIELNIKNNFKDPGMLCDKNDRRFILVLQSELDLMVES MKHLAKTVGFNYDGFPVHQNNFVIVEAFVEAISDIMGEKVDMETMRWFSLLGQKVDAE ESASPWEPGTDFHCSRHSEPKSNFCAAVTVGRTCCIIYHVLGSFFRRYHLKKIPTAHQ NSSSFNSMQ" CDS complement(join(164080..164367,164413..164817, 164871..165503,165745..166197,166253..166342)) /gene="CBG17991" /locus_tag="CBG_17991" /standard_name="CBG17991" /product="Protein CBG17991" /note="Predicted" /db_xref="GOA:A8XSR8" /db_xref="InterPro:IPR001611" /db_xref="InterPro:IPR006553" /db_xref="InterPro:IPR032675" /db_xref="UniProtKB/TrEMBL:A8XSR8" /protein_id="CAP35520.1" /translation="MYPEGYGCYSQQLQRPYFPLHELRDEEFVQNSPLLKLKDSLLDA IVEYVPLKDRLLKLRSVCHRLSDSVKRSVKSVEFLRDELDYCDDPKIAFFLSVYGKNV EHMNFDLYRSCLFREYTQWSWRQSVIASVTRCSQLKQLDILICCRHRLRDMDLQVIFK QCQQLEVLRMDASYINGHCFSKAPTSLRKVELECCQSLTKQGFLGMCTRLQQLQTLLV SLLPCIDEQIIKRIGDMKTLKNLSIVADPEQKMNQFRLAEIKRLPKLSTLCLDGVNNV TDKFLGDLSESSSPAFGSIEHLSLSFCKNIGPNGIAKLKNLPKLKSLNLDGLSKRDIS IGLEAIGNAGRLERLMVSENTFVSPRTITDLVTKCDSLRTLDISVNDRLKDKGFAEQV YSARAFSFGKPLVILTDFKSMWRHLPPFSYQSRVEIVNLNDRHPEEFIDAISANTPQQ LPRGQLIPDLRRGNRYKMFDFSLDTSSGEQLSDSISLEKLDQENQPPVDVLGPLAGLS VKEQEDLVFALMQYQQPFDATGFMDYNQCLIPAVPQSSFTDFENSITVGSAGAPGPPT KEKGSEKILKHSRPSRPKRQAQKERAQQRRSGAVAAQKVAVPADPSFTEDDFPPLG" CDS complement(join(167025..167768,167813..168125, 168174..168208)) /gene="CBG17992" /locus_tag="CBG_17992" /standard_name="CBG17992" /product="Protein CBG17992" /note="contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)" /note="Predicted" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR017379" /db_xref="InterPro:IPR036034" /db_xref="UniProtKB/TrEMBL:A8XSR9" /protein_id="CAP35521.1" /translation="MQEQQGQFRRSRSRSRSRVAFNRRSNYSSGNAPLPIQPAVLAPI VEDFSQSSAMMPVVNPLMVAAKELKFACQLAHGSPVAIIERWSDVSELYQSIADCFGI SKDDIIFLTVNDFKPDMKNMFTGTLNFKDMLYAHVRGQATELRVLKDSNNFGVTITDN GLGNAFIKMISPGSVFDRMRPATQVGQLIEAVDGERVLGKRHYQVARILKNVRRGDEC IIRLIAPKSADPGTMKSSKKSTGELAKGTIRFKSEGGFAVEDIQDQMIQAEMCGKLNE LFDQYLGVQDDQLAMRIWDAASNCETLWQLSESIKQSELSMFDFPDGLVFDMWGIIGD LKREQRNKAPAPVMKTSHTPRTSAMALFH" CDS complement(join(168686..168757,168805..168971, 169016..169397,169677..170307,170359..170402)) /gene="Cbr-rbg-3" /locus_tag="CBG_17993" /standard_name="CBG17993" /product="Protein CBR-RBG-3" /note="C. briggsae CBR-RBG-3 protein; contains similarity to Pfam domain PF00566 Rab-GTPase-TBC domain contains similarity to Interpro domain IPR000195 (Rab-GAP/TBC domain)" /note="Predicted" /db_xref="GOA:A8XSS0" /db_xref="InterPro:IPR000195" /db_xref="InterPro:IPR035969" /db_xref="UniProtKB/TrEMBL:A8XSS0" /protein_id="CAP35522.3" /translation="MSTAKVVPTPSTTLSFDATSLIKYKLSDEVLAKVAASGSLRSSS CRSVFGGLETVGIVILMFVIQLVLRCLPYETKDWEVTLSRSRNLYRTLKEKHLVDPHD KKFSQDPELNNPLASTEHNPWNTFFEDNDLRDIIGKDVSRTFPEIEFFQNGNIRQMMS EILLIYAKEHRYVKYRQGMHEILAPLIFVIYLDNEGFLHAKENDELKTLTVEEEDILN CLFCKEXKNAKPDVKLNNFSHITVSGSSHPNRTQRPQRPVAPSKARPELESPPTILAL APVLQKMKNTIRDRSNTVSVPSSPRRSHEPHREPIRNPQNNDNWTKEVQMMEEQVSTL QTRLNEQDMMCCQISKALEVCAEDVRNAKSSEQCAALAQTILELSKTLLSIKTVPVNQ SPSKNGKNGNVDEKQKLREPPQIRHINEMIDMTSKRPQI" assembly_gap 169458..169677 /estimated_length=220 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(171045..171177,171222..171484,171532..171633, 171677..172015) /gene="Cbr-rps-0" /locus_tag="CBG_17994" /standard_name="CBG17994" /product="Protein CBR-RPS-0" /note="C. briggsae CBR-RPS-0 protein; contains similarity to Pfam domain PF00318 Ribosomal protein S2 contains similarity to Interpro domains IPR001865 (Ribosomal protein S2), IPR005707 (Ribosomal protein S2, eukaryotic/archaeal), IPR018130 (Ribosomal protein S2, conserved site)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XSS1" /db_xref="InterPro:IPR001865" /db_xref="InterPro:IPR005707" /db_xref="InterPro:IPR018130" /db_xref="InterPro:IPR023591" /db_xref="InterPro:IPR027498" /db_xref="UniProtKB/Swiss-Prot:A8XSS1" /protein_id="CAP35523.1" /translation="MSSGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFD GPNIINVKKTWEKLLLAARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGR FSPGCLTNQIQKTFKEPRLLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIG VPCNNKGERSIGLMWWMLAREILILRGKISRQTGFVLDGKEIMPDLYFYRDPTETEKE ETGAHAEVAETQEFQQQPDIDFTAQGGKVEDWAAETATWTNEGKTAADEWATGAQTQS NW" CDS complement(join(173666..174457,174502..174600)) /gene="Cbr-col-89" /locus_tag="CBG_17995" /standard_name="CBG17995" /product="Protein CBR-COL-89" /note="C. briggsae CBR-COL-89 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)" /note="Predicted" /db_xref="GOA:A8XSS2" /db_xref="InterPro:IPR002486" /db_xref="InterPro:IPR008160" /db_xref="UniProtKB/TrEMBL:A8XSS2" /protein_id="CAP35524.1" /translation="MEKFVVGVAATASTLACLVMVITIPQLYNTILEVHDEVLDGVSV FRMETDAAWTDMMDIQITVTPPSKPRVNPFNSIFRQKRQDFSGLPAWCQCEPAKPVCP PGPPGPPGEPGQPGNAGPPGPPGEDNTSTYAPITCPPKDPGCVKCPAGPAGPPGPEGP AGPAGSDGQPGAAGDAGKDGPAGPPGPDGDSGPNGEPGPDGEPGAPGKDGEKGKGEPG PAGPPGPPGPGGPPGDSGSAGSDGAPGPQGPPGQDGTPGNAGPDGQPGAPGGPGLPGN DAAYCPCPPRSAVFVNRFAH" CDS join(177739..177960,178009..178128,178178..178282, 178329..178406,178456..178548,178596..178706) /gene="CBG17996" /locus_tag="CBG_17996" /standard_name="CBG17996" /product="Protein CBG17996" /note="contains similarity to Pfam domain PF01529 DHHC palmitoyltransferase contains similarity to Interpro domain IPR001594 (Zinc finger, DHHC-type, palmitoyltransferase)" /note="Predicted" /db_xref="GOA:A8XSS3" /db_xref="InterPro:IPR001594" /db_xref="UniProtKB/TrEMBL:A8XSS3" /protein_id="CAP35525.1" /translation="MWLERTKWMLANIGWPIAFTFWCQVMVVLYAANGEISQLALYYF QFLWIIIVCSYFSASFTPPERCSLVDDDDKKSSLEGFCEQCNYRKPPRWHHCRRCNQC VHRMDHHCPILQLCIHSGNHKYFLLFLLWPLQMAIFTVYNGYYDFWKTIKSAYTGEIL SNTEQLKGTGVSNAVMVGFAALYLLKNQLPNLLRNQTLIEESRETTTYDLGSWQENVK SVMGSWRIAWLPISMEVENESKRK" CDS join(181151..181267,181309..181396,181449..181813, 181861..181926) /gene="Cbr-ras-2" /locus_tag="CBG_17997" /standard_name="CBG17997" /product="Protein CBR-RAS-2" /note="C. briggsae CBR-RAS-2 protein; contains similarity to Pfam domains PF00071 (Ras family) , PF04670 (Gtr1/RagA G protein conserved region) , PF00009 (Elongation factor Tu GTP binding domain) , PF00025 (ADP-ribosylation factor family) , PF08477 (Miro-like protein) contains similarity to Interpro domains IPR000795 (Protein synthesis factor, GTP-binding), IPR013684 (Mitochondrial Rho-like), IPR003578 (Small GTPase superfamily, Rho type), IPR005225 (Small GTP-binding protein domain), IPR001806 (Small GTPase superfamily), IPR003579 (Small GTPase superfamily, Rab type), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR006762 (Gtr1/RagA G protein), IPR020849 (Small GTPase superfamily, Ras type)" /note="Predicted" /db_xref="GOA:A8XSS4" /db_xref="InterPro:IPR001806" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR020849" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8XSS4" /protein_id="CAP35526.1" /translation="MSNGGKRPPEDDSKLPYYKLVVIGDGGVGKSSLTIQFFQKQFVD YYDPTIEDQYIQHCEIDGNWVIMDVLDTAGQEEFSAMREQYIRGGRGFLLVFSVTERK SFEEAHKLYNQVLRVKDKAEYPVLLVANKVDLINQRVVSEEEGRELAAQLKLMYIETS AKEPPVNVDAAFHELVRIVRSFPSDEGEHEASMASVPRDKKRKDKGKCSIS" CDS complement(join(182716..183013,183042..183172, 183216..183450,183523..183616,185536..185653)) /gene="CBG17998" /locus_tag="CBG_17998" /standard_name="CBG17998" /product="Protein CBG17998" /note="contains similarity to Pfam domains PF01958 (Domain of unknown function DUF108) , PF03447 (Homoserine dehydrogenase, NAD binding domain) contains similarity to Interpro domains IPR005106 (Aspartate/homoserine dehydrogenase, NAD-binding), IPR002811 (Aspartate dehydrogenase)" /note="Predicted" /db_xref="GOA:A8XSS5" /db_xref="InterPro:IPR002811" /db_xref="InterPro:IPR005106" /db_xref="InterPro:IPR036291" /db_xref="UniProtKB/TrEMBL:A8XSS5" /protein_id="CAP35527.1" /translation="MVVLCTMHPLHPVAVQKLVGSCPDFGRNLSAVRVVKRAEGKFLV KKLRELPDEFEVMKIWNRSVEEPGVQGDIDLVIEVAHPKIIAEYGELILEHCDLIAGS PTCFADQELLEKLKNLSLMHARRLLVPAGALWGANDIQKMADVGNLKGLTVTMIKHPT SFKLGSPLFEINEKAKLQESEETILYEGIQQETICSRIVSSGSNNVNTMAGGALAATN LGFDKVKAKLISDPKMTDWHVVEVRVEGDDGFEVITRRNNPAKPGAVTGQLTYYSFLS SIKESRYKPSGIQLC" CDS complement(join(187451..187492,187688..187994, 188042..188240,188286..188394,188443..188622, 188673..188884,189353..189437)) /gene="CBG17999" /locus_tag="CBG_17999" /standard_name="CBG17999" /product="Protein CBG17999" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSS6" /protein_id="CAP35528.1" /translation="MSNSDAVSGTLFQHLFRIFSLFSDQNDKGTFKPAQAEFLIDELL RELRRQTTPKVHDLPDNVTFNEFLNLLQVIFPDREDLQIATDRVFERYVNHVIGKGFV LFRKLTQKRRGCLPIKKRSNESWQFGWLQVLPGIAKIRKQNSDVDDIVQFDEDTVIET PIIDGDASIWSVICSSSTAFQFSHLDPIMAQLFVKDMRTARDYPTREGLARFDYRRSL KNRPNKEGKIRKELEKERSRLESELEEEKKNRKDEEIVRGLTTRLLKQEMEKSEQMQQ VIYELRSKLINGEEGESLGEDDDVEMIEDEVSEDVGENEEISITLPSREEKIQQYAYH LYATQAEEHVTSDDEEIWKQNYNLIVSTQSSFRILELRNHVRD" CDS complement(join(190637..190699,190746..190963, 193192..193702,194236..194421,194470..194939, 194989..196242,196290..196505,196556..196652, 196703..197068,197114..197237,197386..197459, 199437..199721)) /gene="Cbr-acy-1" /locus_tag="CBG_18000" /standard_name="CBG18000" /product="Protein CBR-ACY-1" /note="C. briggsae CBR-ACY-1 protein; contains similarity to Pfam domain PF00211 Adenylate and Guanylate cyclase catalytic domain contains similarity to Interpro domain IPR001054 (Adenylyl cyclase class-3/4/guanylyl cyclase)" /note="Predicted" /db_xref="GOA:A8XSS7" /db_xref="InterPro:IPR001054" /db_xref="InterPro:IPR029787" /db_xref="UniProtKB/TrEMBL:A8XSS7" /protein_id="CAP35529.2" /translation="MDDDVGERTPALGGSCGPSVRAHSSSPRRVPLFERASARWWNPQ FRSATLEAQYWKCSFSQLRDRFRSGLFYIGGVITFWALYHLVLDETTVQNYVISIGLV GIICAMYGFTALSAQYQRFYMPTSFLCTFLICLVTLLLFSAEHHATFMTPVACLATSF QVVLLIYTVIPLPLYLCILIGTIYSILFEILNKNKIGLEEPGYIKLVLHAGVHLLGVH LFILTQVRQRKTFLKVGQSLLARKDLELETQFKDHMIQSVMPKKVDMHLKFEMRIFSF NLQRQHFVADELLKDASELRRPSASNDSNCRTSNATQVDQPIAKTVPEYRKFRPFTMN LMTNVSILFADIAGFTKMSSNKSADELVNLLNDLFGRFDTLCRLRGLEKISTLGDCYY CVAGCPEPCDDHACRTVEMGLDMIVAIRQFDIDRGQEVNMRVGIHTGKVMCGMVGTKR FKFDVFSNDVTLANEMESSGVAGRVHVSEATAKLLKGLYEIEEGPDYDGPLRMQVQVR SINIVRRRGIMNFQGTERRVKPESMKTFFIKGRLNEDVQEEQIQVQEVESLHSQKSSK KSHKPKWVEKLRMNHTNSYPLRSAAREGGGSLRIKLAERNRSTQLLPKESNSICVMED NRKSSSLQALATNNFNGSNTDTNNTYSERGVAGSISKRSVAGSESNSIKGSRSSGLQL SLQDGNSDLNSVGGLDTAISHHHNAASLTRFDTDNNFDQRLAMVLGQGEQTLDKGFWN HNDSLNKWTLRFNEKDVEQEYRAHFVESAERYTSSKKGHLERHQDLMEQGKDGVAGSA VNKYRYSGVFIDIIVATLIFVFASVVAIMAVRPLPLSLLAYVPFASAILILTIILIGL PLLARKKSITCTNQWMPRHLIGLLLISLPIGVAVCIMPSCKFGDCANMVLNYRLTFSY VTMLAIFAHCNFSQLAALPKIASAVLIGLMHIAGVFYCEYNLKHLSVEQDTCNTTLIV IPPLRRGLNATIALNSTTIRGLPQGYGSPLFIWELLMDVVMSILLVAFLNYQFETAFR MSFFGDVQARRDTERMQIVRDQADWLLNNVIPAHAVESLKTDTKYSENHETVGVLFAS ITNWNDMYEENFEGGREFLRVLNEVIGDFDELLDRPDFTHIEKIKTIGPAYMAASGLN PERKKNMLHPKEHLYQMVEFALAIQHVLSVFNEDLLNFDFVCKLGLNIGPVTAGVIGT TKLYYDIWGDTVNIASRMYSTGVLNRIQVSQHTREFLLDRYEFEFRDHIEVKGIDGGM DTYLLVGRKGDGIPPSVKDNKEDQF" CDS join(201071..201201,201278..201533,201653..201994, 202041..202627,202673..203192,203235..203882, 203926..204819,204868..205041,205095..205914, 205961..206154) /gene="Cbr-emb-5" /locus_tag="CBG_18001" /standard_name="CBG18001" /product="Protein CBR-EMB-5" /note="C. briggsae CBR-EMB-5 protein; contains similarity to Pfam domain PF00575 S1 RNA binding domain contains similarity to Interpro domains IPR003029 (Ribosomal protein S1, RNA-binding domain), IPR006641 (YqgF/RNase H-like domain), IPR017072 (Transcription elongation factor Spt6), IPR000980 (SH2 motif)" /note="Confirmed by transcript evidence" /db_xref="GOA:Q93148" /db_xref="InterPro:IPR000980" /db_xref="InterPro:IPR003029" /db_xref="InterPro:IPR006641" /db_xref="InterPro:IPR010994" /db_xref="InterPro:IPR012337" /db_xref="InterPro:IPR012340" /db_xref="InterPro:IPR017072" /db_xref="InterPro:IPR023319" /db_xref="InterPro:IPR023323" /db_xref="InterPro:IPR028083" /db_xref="InterPro:IPR028088" /db_xref="InterPro:IPR028231" /db_xref="InterPro:IPR032706" /db_xref="InterPro:IPR035018" /db_xref="InterPro:IPR035019" /db_xref="InterPro:IPR035420" /db_xref="InterPro:IPR036860" /db_xref="InterPro:IPR037027" /db_xref="InterPro:IPR041692" /db_xref="InterPro:IPR042066" /db_xref="UniProtKB/Swiss-Prot:Q93148" /protein_id="CAP35530.1" /translation="MDFIDNQAEESDASTDRSDDDEPQSKKMKMAKDKLKKKKKVVAS SDEDEDDEDDEEEGRKEMQGFIADEDDEEEDARSEKSDRSRRSEINDELDDEDLDLID ENLDRQGERKKNRVRLGDSSDEDEPIRRSNQDDDDLQSERGSDDGDKRRGHGGRGGGG YDSDSDRSEDDFIEDDGDAPRRHRKRHRGDEHIPEGAEDDARDVFGVEDFNFDEFYDD DDGEEGLEDEEEEIIEDDGEGGEIKIRRKRDTTKKTTLLESIEPSELERGFLSAADKK IMIEDAPERFQLRRTPVTEADDDELEREAQWIMKFAFEETTVTNQAAVDADGKLECLM NIDSSEIEDKRRAVVNAIKAVLHFIRVRSNSFEVPFIGFYRKESIDNLLTMNNLWIVY DYDEKYCHLSEKKRRLYDLMRRMREYQELSDDITAKRRPINEMDLIDINFAETLEQLT DIHANFQLLYGSLLEDMTKWEKERRAADGEETEYRAKFKSSIRNDKYQMCVENGIGEL AGRFGLTAKQFAENLDWRKHDIDQDSAFPLEAAEEYICPAFIDRETVLNGAKFMLAKE ISRQPLVRSRVRQEFRDNAHFWVKPTKKGRDTIDETHPLFNKRYIKNKPIRNLTDEEF LYYHKAKQDGLIDMVLMYESDEDQAANQFLVKKFLSDSIFRKDEYTDNVEQWNAVRDQ CVNMAITEMLVPYMKEEVYNTILEEAKMAVAKKCKKEFASRIARSGYVPEKEKLDEED EEHSARRRMMAICYSPVRDEASFGVMVDENGAIVDYLRMVHFTKRGHGGGNTGALKEE SMELFKKFVQRRRPHAIALNIEDMECTRLKRDLEEAVAELYSQSKIFSQINVYLMDNE LAKVYMRSNISIAENPDHPPTLRQAVSLARQLLDPIPEYAHLWNSDEDIFCLSLHPLQ RDIDQEILAQLLNHELVNRVNEEGVDINKCAEFPHYTNMLQFTCGLGPRKATSLLKSI KANDNLIESRSKLVVGCKLGPKVFMNCAGFIRIDTRRVSDKTDAYVEVLDGSRVHPET YEWARKMAVDALEVDDSADPTAALQEIMETPERLRDLDLDAFADELNRQGFGEKKATL YDISSELSERYKDLRAPFVEPSGEALYDLLTRSGKEVKVGCKMLGTVQSVQYRKVERD TIDSMIPEHTEEDQYICPSCKIFTAADPQSVREHLLNAGRPGGCVGSACGIRVRLDNG MTAFCPNKFISSSHVDNPLTRVKLNQPYWFKVMAINKEKFSILLSCKSSDLKEDAPAE RDDFWDQQQYDDDVAAMKKETTKKKDADTRVKRVIAHPNFHNVSYEAATKMLDEMDWS DCIIRPSANKESGLSVTWKICDRIYHNFFVKESAKDQVFSIGRTLSVGGEDFEDLDEL IARFVLPMIQISHEITTHKYFFTQGTSEDTDQVETFVHEKRRELGRSPYVFSASYRQP CQFCISYMFDNSNRIRHEHFKISPRGIRFRQQNFDSLDRMMAWFKRHFNEPPPGIRSS LSYRPTGRTGPPPSAPYQQPPQQQYYR" CDS join(206547..206605,206658..206713,206761..206881, 206922..207020,207073..207397,207427..208125, 208171..208857,208902..209057) /gene="CBG18002" /locus_tag="CBG_18002" /standard_name="CBG18002" /product="Protein CBG18002" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XSS9" /db_xref="UniProtKB/TrEMBL:A8XSS9" /protein_id="CAP35531.2" /translation="MNDSSPKTTFFLNSVSSAPRRPQKLGSVQSIVRDESDKNAPPPF EEIFLSDDEETPSQAKVVRCQTCSKDITQWMNSRRDIHKKVCKQKQLAKETEKRTQRK SKTLTETIEKYDQVIEKPFLEPEEPPKSWELSKNNVKFARITADDEENRRRKRPRSFA VVELAPKKCQCEVLTTLHSRFVDEFHSKSLNIVNKKEKGVTEHAFQMKIIIGKASFSE FRLSRFEQLSSDLQKTLDDTSTPTFPMISINSSDGHNLRCHSLILKHRTSLLKIHPRS ENIEIAQPRDVLKTWLTFVFTANIEWSKEEKEGVKELAMKYGPVGLENLLKEEKDKEE EATVIEEKAHVNIELKSSSNNQKTTDEPLEEDKEEENIVPEEDLIVEESVTMEHVVEP IDFYETDNPLIGFGEDNDYEEEPIHDADIILDDPPNSTAHSTLQKSRDNLTMDSFDEW SNQPNNIQSTSSPPITVVTPVRNAPKPIFGSHIKILKTNDITPMPQFDVMDESELKER MKEIGMRPKGKKAMIQILKRAYTTLHPEVCVGTPTLRPLIRDESLENVVGKQSKKLPK RKSLNERIEGSPKKKNSPTKQKASTVSDICNDVGEDDVDSQADKTLNISNDEHEFAKV YSDNIGEEEDDDEDSVATSSSDKPTDPNNLKKLFLNWLRDEQNSVLYEHILSLQPVSL EEMLVRLEKSEGPLGRIGKGKLVKILENLRITYQLPQKPGRARAGGFKRRL" CDS complement(join(209470..209689,209733..209891, 209939..210176,210223..210511,210557..210778, 211085..211240,212128..212220)) /gene="CBG18003" /locus_tag="CBG_18003" /standard_name="CBG18003" /product="Protein CBG18003" /note="contains similarity to Pfam domain PF00646 F-box domain contains similarity to Interpro domain IPR001810 (F-box domain, cyclin-like)" /note="Predicted" /db_xref="InterPro:IPR001810" /db_xref="UniProtKB/TrEMBL:A8XST0" /protein_id="CAP35532.2" /translation="MSLSKQERPEDRLSALDFLGGHQKIKASKKSRHQNAIGVTSFFG LNIKQFFTSRIGKPADAKIKEGEKCAIIEKSFCESDDEQFPWLALPDDLRETIVHKMP LQSRINLAATSKDERDFVKNMKVTCKLFAIEDLAVRSTNIRRYPGLFDKVYAHFGKKY FVNFLCDWQHDIAICFCEQVRPFKVVTKVYWLSPLGILKKTIVPGVSAYDLAVQTARD FFKLLTDDCKKSSVALSGWPKDVFEIPELRKSHTIGSCYDEVESLHKTLDFFKPYSFD CYMHKTSIKYMWPFSFYYVARHGIPGWFRMKAKDHALSNQMLEKDIQIMILHDTLISV ESMNEFMRRWQNGQISEKFCWWAISTVMGVEVEEVIDRLNVIFVEEKYGPKYNFSKRA SKKSKPPQMVRMVRYDIQSTVNRNAYGTIIVRDNMVMFGNSGCAPKVDERGLLTYASK SSVHEIHF" CDS complement(join(215978..216250,216297..216403, 216452..216822,216870..216910)) /gene="Cbr-tag-189" /locus_tag="CBG_18005" /standard_name="CBG18005" /product="Protein CBR-TAG-189" /note="C. briggsae CBR-TAG-189 protein; contains similarity to Pfam domain PF10277 Frag1/DRAM/Sfk1 family contains similarity to Interpro domain IPR019402 (Frag1/DRAM/Sfk1)" /note="Predicted" /db_xref="GOA:A8XST1" /db_xref="InterPro:IPR019402" /db_xref="InterPro:IPR039545" /db_xref="UniProtKB/Swiss-Prot:A8XST1" /protein_id="CAP35533.2" /translation="MALGEDDILSVPFKYFVFCIGGLPSSALLICVLLSLFLHFDQAT STHCEVANWLPSISAAVSTYTPEKYIWRILIGLHIGPRLVVAVAFRNFLMSSPLRPYT GSKQFKFLCNIACGLNLLENFFLLALTSISSSEDHSLHAKCFGGFAISSIIYMILSTW LFSESGRRRATNLGERSYEYKILGASIFVVCFFLGGYLYWRHNTYCEPGIYTLFALVE YSAVLSNIFFHCTLYYDFHGKNIALTSSFGSSHYNLLPTQIEKDT" CDS complement(join(217101..217316,217399..217723, 217777..217861,217966..217999)) /gene="Cbr-mrpl-16" /locus_tag="CBG_18006" /standard_name="CBG18006" /product="Protein CBR-MRPL-16" /note="C. briggsae CBR-MRPL-16 protein; contains similarity to Pfam domain PF00252 Ribosomal protein L16p/L10e contains similarity to Interpro domains IPR000114 (Ribosomal protein L16), IPR016180 (Ribosomal protein L10e/L16)" /note="Predicted" /db_xref="GOA:A8XST2" /db_xref="InterPro:IPR000114" /db_xref="InterPro:IPR016180" /db_xref="InterPro:IPR036920" /db_xref="UniProtKB/TrEMBL:A8XST2" /protein_id="CAP35534.1" /translation="MKKYPFPVTFENVRFPPNGQLKLPVMPAEPVYDAEKGEKKYKST KRMIEARGVEEVHTELIHEQYGLAAVSGGFIDSDDFKFLQDRINKNLIDNQFAVWRVD EPWLPRTKKAQGTRLGGGKGSIQKYVTPVRANRIILEVGGYITEIEAKAFLLYLCERF SFPVEFVSETMLAERRRKAEETRMMNKNVFNWDRVIKYNMQNCNSWLSSYDVAWKGKY R" assembly_gap 218417..218960 /estimated_length=544 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(219157..219219,219306..219470,219518..219800, 219844..220130,220175..220335,220379..220619, 220668..220892,220936..221395,221445..221682, 221733..221964,222010..222084) /gene="Cbr-clp-2" /locus_tag="CBG_18007" /standard_name="CBG18007" /product="Protein CBR-CLP-2" /note="C. briggsae CBR-CLP-2 protein; contains similarity to Pfam domains PF00648 (Calpain family cysteine protease) , PF04212 (MIT (microtubule interacting and transport) domain) contains similarity to Interpro domains IPR001300 (Peptidase C2, calpain, catalytic domain), IPR022684 (Peptidase C2, calpain family), IPR007330 (MIT)" /note="Predicted" /db_xref="GOA:A8XST3" /db_xref="InterPro:IPR001300" /db_xref="InterPro:IPR007330" /db_xref="InterPro:IPR022684" /db_xref="InterPro:IPR036181" /db_xref="InterPro:IPR036213" /db_xref="InterPro:IPR038765" /db_xref="UniProtKB/TrEMBL:A8XST3" /protein_id="CAP35535.1" /translation="MDEKATQSALELSQKAIYYDQGKKYEEAIFCYTEAGNQLLKLVQ GKKCLSIFRKNVMECINRAEFLKSNIQDLQLQYPPSRDDILHNVDFLMIKASVFQSCE DQLDESREIYESVVEQCLGASKNRALPQETLKRLRVTAEGALKCIEDLVTLKKKVTEV ELLFPEVPVDDLSKLNISEHSTPSPSTNHQPFKTTRQVPVPPSPSNSQKFTKEELDVL STTSNINGKLYVPFHSYDKVNEFKGQNGKFTDPDGHIGLTQKQRLKLKGWKRVSDLFE HPTIISSIDCNTIKQTVISDCSFISSLSIAALYEKRFKKQLVTSIIYPQDAHGKPIYN PAGKYMIKFHINGVWRKVVIDDYFPVDENNRMMCSQTENKGELWVSLLEKAYMKVMGG YDFPGSNSNIDLNALTGWIPERIELNESNKADPDAIFRKLFDRFHRGDCLITLATGKM TEEMQKRSGLVETHAYAVIDIRSVENKRLLKVKNPWTHSRWKGNFSEKDKLNWTTKMK SSLVYDPEVAATKDDGIFWIDYESVRHFFDVIYVNWNADLFPFTSVYHATWKQDTGPV RDVYTVGDNPQYKLTVKLNEKTTAAAVWILLTRHITAIDDFAVNKEFITLIVYETGQK IYIPTNPRPISDGVRINSPLYLCQLLDTKPGINNYTLVVAQYEKTNTINYSLRVFSTT DIILEPVKLPYTITKTTRGNWDGSEKHPVMKLVLHSKTDDNSLFMELKAPKQFCVNLE MKQHSSDRTIFLETKSTGAYRPGYTVLTVDKVPAGTYYVKAATYTAGEKGPYILRVDS TCKFDFDPVKL" CDS join(222330..222601,222652..223084) /gene="Cbr-sel-13" /locus_tag="CBG_18008" /standard_name="CBG18008" /product="Protein CBR-SEL-13" /note="C. briggsae CBR-SEL-13 protein; contains similarity to Interpro domain IPR003604 (Zinc finger, U1-type)" /note="Predicted" /db_xref="GOA:A8XST4" /db_xref="InterPro:IPR003604" /db_xref="InterPro:IPR040050" /db_xref="UniProtKB/TrEMBL:A8XST4" /protein_id="CAP35536.1" /translation="MSLNPMIAKHKPNGNIQCLVCNAEVKPKIWTAHVNGKKHRESIE KLKSSAQKRGKEVGQSSSGEPPNKRQKEIPKQGPTSLPTDFFDEEDSTPFRKEEFKSA VSSHTGNLIEGVPAGFFDDKRLDGNVKETRERNAELDAEYERWKEEIGEEQMDQDAKA EEHEAAVQRELELERIDEQMAALKKLNSMEIQKEKRINQAKERRLKQEAPEDDSDDDE EIDLDALDWRAKNIFS" CDS complement(join(223432..223662,223716..224018, 224061..224267)) /gene="Cbr-dnj-18" /locus_tag="CBG_18009" /standard_name="CBG18009" /product="Protein CBR-DNJ-18" /note="C. briggsae CBR-DNJ-18 protein; contains similarity to Pfam domain PF00226 DnaJ domain contains similarity to Interpro domains IPR003095 (Heat shock protein DnaJ), IPR001623 (Heat shock protein DnaJ, N-terminal)" /note="Predicted" /db_xref="GOA:A8XST5" /db_xref="InterPro:IPR001623" /db_xref="InterPro:IPR036869" /db_xref="UniProtKB/TrEMBL:A8XST5" /protein_id="CAP35537.1" /translation="MLRLAVGIQRRSLFGSLPCSSQQDHYKVLGLAQSATQKEIKSAY YKLSKQHHPDTNPENKEDAAKKFHQVAMAYEVLSSEDKRKAYDTTRITTSPMPGDASF SNRYRRRSATKQYTDIDIDYKDFEHFQRSTRRRPQYHSHFDMPNEFYAEFGGFKKRVF KSEYEAAQEKHGSMYKDGRAAQREMEELRRQVEREQAAQQARYPIPTFEQMMREKRAK EANEAKQYMAGMFVTAIVAGFLTVLLTR" CDS complement(join(224621..224789,224838..225180, 225231..225713,225760..225875,225922..226603, 226658..226910)) /gene="CBG18010" /locus_tag="CBG_18010" /standard_name="CBG18010" /product="Protein CBG18010" /note="contains similarity to Pfam domains PF02922 (Carbohydrate-binding module 48 (Isoamylase N-terminal domain)) , PF00128 (Alpha amylase, catalytic domain) , PF02806 (Alpha amylase, C-terminal all-beta domain) contains similarity to Interpro domains IPR004193 (Glycoside hydrolase, family 13, N-terminal), IPR006048 (Alpha-amylase, C-terminal all beta), IPR006047 (Glycosyl hydrolase, family 13, catalytic domain), IPR015902 (Alpha amylase), IPR006589 (Glycosyl hydrolase, family 13, subfamily, catalytic domain)" /note="Predicted" /db_xref="GOA:A8XST6" /db_xref="InterPro:IPR004193" /db_xref="InterPro:IPR006047" /db_xref="InterPro:IPR006048" /db_xref="InterPro:IPR013780" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR014756" /db_xref="InterPro:IPR017853" /db_xref="InterPro:IPR037439" /db_xref="UniProtKB/TrEMBL:A8XST6" /protein_id="CAP35538.1" /translation="MSNTRPPKIDELLKVDPYLHDFQDEISRRYGVFLDYQRRIEECG GMEAFTSSYKQFGLNVQPDNSVKGLEWAPAAEKLALIGDFNNWDQDANVYTKEEHGKW SVTVPANADGSCAIPHNSVIKIAVSRHGQTYFKLSPWATYVTCPNPKETVIYHQNFWN PSEKYQMKEARPARPASLRIYEAHVGISSHEGKINTYRAFADEVLPRIKHQGYNTIQL MAVMEHVYYASFGYQVSNFFAVSSRCGTPEDLKYLVDKAHSMGIFMLLDVVHSHASKN VEDGLNQWDGSNGGYFHDNARGFHNLWDSRLFDYTQIETLRFLLSNVRWWVEEYGFDG FRFDGVTSMIYHSHGMNDSFCGGYPMYFGLNADTDSLVYLMLANDFLHKKYPFMVTIA EEVSGMPGICRPVEEGGQGFDYRLAMALPDMWIKILKHTSDEDWKIEDIVFNLENRRY AEKHVAYAESHDQALVGDKTIAFWLMDKEMYDFMSTDSPLTPIIDRGLALHKLIRLIT IGLGGEAWLNFIGNEFGHPEWLDFPRVGNGESFHYARRQFNLVDADYLRYKFLNNWDR EMMLLEERTGFLHKGYAYTSWKHDGDKVVVFERGGLVFVMNLHPNKSFADYSIGVNTA GKYRIALNSDDAQFGGHSRVDNGTVFHTSDDGYAGRRHRLQVYIPCRSAIVLEKVDE" CDS complement(join(227238..227798,227881..228038, 228086..228335)) /gene="CBG18011" /locus_tag="CBG_18011" /standard_name="CBG18011" /product="Protein CBG18011" /note="Predicted" /db_xref="InterPro:IPR000626" /db_xref="InterPro:IPR022617" /db_xref="InterPro:IPR029071" /db_xref="UniProtKB/TrEMBL:A8XST7" /protein_id="CAP35539.1" /translation="MSDSDDNTYDDYLESRRAAIQKKRKPVAVYESDSDDDFPVKKTE PNKKMRSYEPNGDSDDDSIFEEVRNHDEVMTDKLDNLEEEYRRELTNSKHSVLHVQGT TNDYLTKTMEKVGAFLEPEKQIETEDICIDKADTSSTQKESTTVRVVINDCESRISKR NCRDMDIHSTFAEVRKELSLKWMCHFNEVHLMYNGNRIGDVTPHELGIVPFQVPLPEF DAIREEKERPSNVISPKVITIETVSDAISIKVQMKNRKKPIHLSVTEETTVEDIMKKV IESLAGDASIPSLSKMKAMFDDEYCENSQTCKDLGLEDADCIDIYY" CDS join(229602..229805,229849..229962,230004..230585, 230630..230722) /gene="CBG18012" /locus_tag="CBG_18012" /standard_name="CBG18012" /product="Protein CBG18012" /note="contains similarity to Pfam domain PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) contains similarity to Interpro domain IPR000504 (RNA recognition motif domain)" /note="Predicted" /db_xref="GOA:A8XST8" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR035979" /db_xref="UniProtKB/TrEMBL:A8XST8" /protein_id="CAP35540.1" /translation="MVVQNPTAISAGIRKPAQKQDKAQKKPQKKIWVVKLQRIPFGFF ERELLGYFRQFGNVLRIRVARSRKTGNHKGWAYVGFDNKAVAEIAAESMNGYLMFEQR LRCKVMKPALIPKSMLKGSLLVMRPSYLGLAKKDAIARNRCTTKNDSENTKRRVSNLK KTIVKLQNMGIDYDFSAAGVKKTLPKNSEDNDIQVIGSAKTNFPKKTTSKVIEPSTPK VNTPKAVAPKITPKVATPKSETPKRKAVEAVTPVAAAKKVVIKTPQTDKIKKVAEKPV FSPKTRAAKAAALGTPVAKSTLSKTIMKSVAASARPAAVEKKTITKGRGKKKSL" CDS complement(join(230837..230932,230982..231146, 231198..231313,231361..231670,231733..231993, 232039..232444,233256..233344)) /gene="CBG18013" /locus_tag="CBG_18013" /standard_name="CBG18013" /product="Protein CBG18013" /note="contains similarity to Pfam domains PF00310 (Glutamine amidotransferases class-II) , PF00156 (Phosphoribosyl transferase domain) contains similarity to Interpro domains IPR000583 (Glutamine amidotransferase, class-II), IPR005854 (Amidophosphoribosyl transferase), IPR000836 (Phosphoribosyltransferase)" /note="Predicted" /db_xref="GOA:A8XST9" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR005854" /db_xref="InterPro:IPR017932" /db_xref="InterPro:IPR029055" /db_xref="InterPro:IPR029057" /db_xref="InterPro:IPR035584" /db_xref="UniProtKB/TrEMBL:A8XST9" /protein_id="CAP35541.1" /translation="MCGIFGIVAAGKCDNLNILAANGLASLQHRGTESSGLVGSDGVT RDHVEIIKGHGLVRDVITEDNISKMDGQSIIIGHNRYSTAGKKKSGINCVQPFVVYTA MGTVAIAHNGELVDAKQKRTEVLHEGVGLSTDTDSELIAQMIAKAIALNVKCKYGQDI GDITRELAVTMSALNMSYSLLVMTFDRLYAIRDPFGNRPLCVGTVISKDGSPQAYIAS SESCALPANAKLDFEVRPGEIVELSADGIKSVWQMKPNTPLAMCIFEYVYFARNDSEI EGQQVQTVREECGKTMALEDDIEADIVGNVPDSSLSAAIGYASQSGITYEPVLHRNSY VGRSFIQPNDEMRQNAIKIKFGVLKKKVQNQRIVLVDDSIVRGNTMRTLVKMLRDAGA KEVHLRIASPPVKFPCFMGINIPTSQELIAAQKSIPEICEYVGADSVRYLSVDGLVSS VQKGIERTTNFSPGHCTACLTGKYPVPINI" CDS 234093..234224 /gene="CBG25963" /locus_tag="CBG_25963" /standard_name="CBG25963" /product="Protein CBG25963" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKR3" /protein_id="CAS00493.1" /translation="MFLVSEFLLHFSQNLSSEFHPRTPQTLLLIVIFMSQTPIFEIR" CDS join(234486..234509,234577..234783) /gene="CBG25964" /locus_tag="CBG_25964" /standard_name="CBG25964" /product="Protein CBG25964" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKR4" /protein_id="CAS00494.1" /translation="MPGLQENKRWKRNAGDRSRRSHTGNYRNLTIVLFSDLLFRFSCV FRQCSMPKRFYFLTCLGEINRKLAETQLKTRK" CDS join(235492..235568,235615..235711,236023..236154, 236203..236468,236518..236638) /gene="Cbr-tag-243" /locus_tag="CBG_18014" /standard_name="CBG18014" /product="Protein CBR-TAG-243" /note="C. briggsae CBR-TAG-243 protein ;" /note="Predicted" /db_xref="GOA:A8XSU0" /db_xref="InterPro:IPR027817" /db_xref="InterPro:IPR038095" /db_xref="UniProtKB/TrEMBL:A8XSU0" /protein_id="CAP35542.1" /translation="MPIGSASDTIRKFNAVAQANEETLKKNPYSDTYKIQQFDTKNYG RPPPGSKTEARGVKAGVHVCREILFLCETIDQNAEGEEPHKWVKFGKLFNIYSFYSDK LVGMLIRARKYGLVHFEGEMLYQRQDDEKVITMLMALQEIRESLSASGDPANCIQIRR SSAPAPFVPPEVKEKPRLRPIRSDSVTSSKAKFEAPSSINTESDPLPVLGKPKKPWTP KDTSKAPVFCTY" CDS complement(join(237153..237155,237185..237367, 237418..237444)) /gene="CBG18015" /locus_tag="CBG_18015" /standard_name="CBG18015" /product="Protein CBG18015" /note="contains similarity to Interpro domain IPR000609 (7TM GPCR, serpentine receptor class g (Srg))" /note="Predicted" /db_xref="GOA:A8XSU1" /db_xref="InterPro:IPR000609" /db_xref="UniProtKB/TrEMBL:A8XSU1" /protein_id="CAP35543.2" /translation="MEYIKKVSWASQSRFQLVFIIIALVSTIVCTSVTFYTLIMLPKR IRSVERTLSLATAYISMSFIVLAVFQ" CDS complement(238000..238488) /gene="CBG18016" /locus_tag="CBG_18016" /standard_name="CBG18016" /product="Protein CBG18016" /note="Predicted" /db_xref="UniProtKB/TrEMBL:G2J6X9" /protein_id="CAP35544.1" /translation="MAARLNRNRNERRSSSTASTMRTTTSSKPEMIIKTNRPISSTTP RQTTTKTRKPRKKTQSRKADPTTTITTTATMRTTTTMRTRRTTSHQSRRTTTEPRTKR TTSAPETRQTTITTQKTRNDRRRRGRPTTTTPRSTTITPRFTTTTLKSTFTGRRKFKG RG" assembly_gap 238608..239200 /estimated_length=593 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(239330..239547,239599..239745,239793..240016, 240058..240173,240362..240434,240483..240865) /gene="CBG18017" /locus_tag="CBG_18017" /standard_name="CBG18017" /product="Protein CBG18017" /note="contains similarity to Pfam domain PF12762 ISXO2-like transposase domain contains similarity to Interpro domain IPR024445 (Transposase, ISXO2-like)" /note="Predicted" /db_xref="InterPro:IPR024445" /db_xref="UniProtKB/TrEMBL:A8XSU3" /protein_id="CAP35545.1" /translation="MIMFMFMLLMLLSSTSAHKGRPQRHTIVQPSELRPVEAIANLPE LTSRNIADFIGNIDGTEESDEAALRFLATYGLVPNERECPECLNGKMSLVKDNALPLH FVWRCSSCKTSNIITKKMIRENTFFQEQKLSVQKIVHIAADWVESPGRNNERTASLHG VTTSTIVNLNKLFRQLTEQWFERQIEKNSNFLLGGPGKIVEIDESHMYKAKYNRGHML RRKSIWIFGMTERHTNKVAMFRVKQRDAATLLPIIRAHVKPGSMIVSDGWAAYGGIRT LQRAFTHRWVNHKVNFVDPSDRRVHTQSIEATWGAFKRELKAKYGVPEDQLDGYMSTY MFRRYFGRKKLLNHLLIEMKYYKKEDDSPAEGSSKDADKIILLQPIFFFFVF" assembly_gap 242546..242615 /estimated_length=70 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(243750..243914,244226..244295,245368..245474) /gene="CBG18019" /locus_tag="CBG_18019" /standard_name="CBG18019" /product="Protein CBG18019" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSU4" /protein_id="CAP35547.1" /translation="MLHHRNLLSFCSASAHPLPLCAPLDYCPTSAQPWIKVGPQPNSP NFSTKVAHIYRLLSGEYVDGDQVDLSVTVLSGLGSQPRAKIHSFEAESGSLSIKRPLY LSSQKTWNLNR" assembly_gap 245868..248851 /estimated_length=2984 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(250525..250600,250645..250823, 251125..251307,251349..251492,251536..251754, 251878..252108)) /gene="Cbr-srg-10" /locus_tag="CBG_18020" /standard_name="CBG18020" /product="Protein CBR-SRG-10" /note="C. briggsae CBR-SRG-10 protein; contains similarity to Pfam domains PF10328 (Serpentine type 7TM GPCR chemoreceptor Srx) , PF10323 (Serpentine type 7TM GPCR chemoreceptor Srv) , PF02118 (Srg family chemoreceptor) contains similarity to Interpro domains IPR019426 (7TM GPCR, serpentine receptor class v (Srv)), IPR019430 (7TM GPCR, serpentine receptor class x (Srx)), IPR000609 (7TM GPCR, serpentine receptor class g (Srg))" /note="Predicted" /db_xref="GOA:A8XSU5" /db_xref="InterPro:IPR000609" /db_xref="UniProtKB/TrEMBL:A8XSU5" /protein_id="CAP35548.1" /translation="MSKFTLPANFSYDDPLPFTCNENPNLPVSLAMYGIQASYLILGA ALNFLIVLTIFKSKGSTYRHNSFYILYTADAVMGIYINLAEVFFGRLFIYITPLCPII SPYFFSPSVVTKFYYAAVHYSLGFKTFSQIFMSFNRMTCVILPMKHQKLWRKILTPVL VTLFILPLGVIWNILISRVYINPNGAGFSVNYKDTIPWASISLLHLIHCTICFVLVII FFSVTIFGLATLKQRIKSAERSLTIVTMIMAVQTMIFAFIQIYFAFLAVYTPSIRGIL LMTVSFVFDSMNVFGPIGLIVMSQQLRKDVFHLKSVETQPSSRSISTVSHHQPLSRAI STVIAPISS" assembly_gap 260050..260296 /estimated_length=247 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(264102..264222,265246..265837,265887..265994, 266404..266527) /gene="CBG18022" /locus_tag="CBG_18022" /standard_name="CBG18022" /product="Protein CBG18022" /note="contains similarity to Interpro domain IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:A8XSU6" /db_xref="InterPro:IPR013087" /db_xref="UniProtKB/TrEMBL:A8XSU6" /protein_id="CAP35549.1" /translation="MFVVINTDPGTTLNELMAFMTQKTITFSVTDNLSKLCDRPDKWK EMGTQTDDDYDSLLPHKKSKISNGDTDCVSPCSSATPSESIDLGISIKTNGNGNNNWD LENSTVLRGLIKNENEKSNHLMKEEPEEDASVEDVMNSEMIQTQLMQALFAKSQNGGI NGFAALEDNESLDGKSSAGVLSDLQEAFRMDGSPVSAIRYKPAYASTKRGVCHVCNRE VSLITTHRRRHAITHLGFKTLKCALCYKFFSRQDLATGHFKKDHPTSEFTPFVDTMSS EDEKQLVLMMGLCFPDESGPRKRKDGEKNKGEEQQTVE" CDS complement(join(267209..267343,267963..268087, 268134..268365,268418..268493,269219..269380, 269563..269686,269738..269984)) /gene="Cbr-cdka-1" /locus_tag="CBG_18023" /standard_name="CBG18023" /product="Protein CBR-CDKA-1" /note="C. briggsae CBR-CDKA-1 protein; contains similarity to Interpro domain IPR004944 (Cyclin-dependent kinase 5 activator)" /note="Predicted" /db_xref="GOA:A8XSU7" /db_xref="InterPro:IPR004944" /db_xref="InterPro:IPR036915" /db_xref="UniProtKB/TrEMBL:A8XSU7" /protein_id="CAP35550.2" /translation="MGANLTSPLPHHHRTQTTSVCNHLFSPGDGGPTFAPQRDSTGSS RNSSNGKESVLMQGWNWSKRNIQPVMSRRSLPKSGSSSEATSSKSSDSLVSFTRNVST STTSSQYGKLSISLDRNQNYKTVPRPADTTTIIPNYYSLREEFRRGLQINTRQDLDNN NLTANELSVISSPKHVPRPRSIRDDNANDDLSPGDQQENVISEKRGTKKTIIQASTSE LLRGLGIFISKNCDVSDFDPAHLVTWLRSVDRSLLLQGWQDIAFINPANLVFIFLLVR DVLPDERHLIHSLEELHAWILSCLYVSYSYMGNEISYPLKPFLIGNDRNVFWNRCVSM VTSHSHKMLLLNSSSTFFTEVFTDLKHCSNPS" assembly_gap 270230..270855 /estimated_length=626 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(274102..275078,275557..275853, 275904..275998,276044..276242,277162..277240)) /gene="Cbr-pqn-29" /locus_tag="CBG_18024" /standard_name="CBG18024" /product="Protein CBR-PQN-29" /note="C. briggsae CBR-PQN-29 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSU8" /protein_id="CAP35551.2" /translation="MNIKYFTFLVASVLCESNFTESTVKSDTTPLVDLSKVARDQGAI VVAAFPAISTIKSKGKKKFGLGAFERGNANTGTTFSRRGGSSTGNPYSSGYQGIPESQ SSLPGERMGGMTRSGKRTFGSYGSVDTAKGQSSANRAGTGSGWRGSSRNSDGENDDWN NNNNFNSNSNKNNRMTKFGNRNGDGDDYEIGNGNNQDNWNSGSSSNGNGYSGSNGSGG GGWNNGDNDDSWNSYSNNGNRNSKNNNNNNYGNSWGTNDNDDGNSWKGSGGGNGNSEN WGNQGGQGGGGNGDSNYGNERSWKPSENSYGRNRGSNGGGDEWGSGSNNGDNLSNNWN GGSNGGNTDNDNWGSNGEGNSENSGGSWNNNGGGSDNWGNGQDNDNGGSEGGYGSNKW NGNGNQDNDNFGGYKKNSGYGSNSNSNNNGNNDGWASSNNGGNYGNNNWNNNNGGWGS SNGNNNNNGNDGNGNWESNNNGNGGDNWNGNDGNYGNNGNNNRNNNGNGDEDYGDWYS MRMKDPIPNDASAAETVTSRDPEVEKKIAELTNMDTYKKL" CDS join(280815..280917,281209..281499,281649..281873, 281919..282064,282110..282184,282230..282313, 282460..282523,282576..282646) /gene="CBG18025" /locus_tag="CBG_18025" /standard_name="CBG18025" /product="Protein CBG18025" /note="contains similarity to Pfam domain PF00481 Protein phosphatase 2C contains similarity to Interpro domains IPR001932 (Protein phosphatase 2C-like), IPR000222 (Protein phosphatase 2C, manganese/magnesium aspartate binding site), IPR015655 (Protein phosphatase 2C)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XSU9" /db_xref="InterPro:IPR000222" /db_xref="InterPro:IPR001932" /db_xref="InterPro:IPR015655" /db_xref="InterPro:IPR036457" /db_xref="UniProtKB/TrEMBL:A8XSU9" /protein_id="CAP35552.1" /translation="MGQTLSEPVTKKESASCANENYLVGSSCMQGWRVDMEDAHTHLL SLPDDPKCAFFAVYDGHGGSKVSQYSGINLHKKVVARKEFSEGNLKEAIERGFLDLDQ QMRVDEETKDDVSGTTAVVVLIKEGDVYCGNAGDSRAVSSVLGEARPLSFDHKPSHEI EARRIIAAGGWVEFNRVNGNLALSRALGDFTFKNCDTKPAEEQIVTAFPDVITDKLTP DHEFIVLACDGIWDVMTNQEVVDFVREKLSEKRDPQSICEELLTRCLAPDCQMGGLGC DNMTVVIVGLLHGQSPDTLFSKCARPAVFTGVSNEDGGQIQQDISRVINNFDGEQRVV RQEEEDDDNEPAPANFRV" CDS join(283960..284100,284145..284430,284473..284573, 284619..284698,284741..284926,285320..285537, 285582..285685,285731..285890,285940..286206, 286329..286441,286489..286790,286834..286954, 292363..292503,292505..292708,292767..292937, 292977..293100,293149..293755,293803..294076, 294125..>294535) /gene="CBG18026" /locus_tag="CBG_18026" /standard_name="CBG18026" /product="Protein CBG18026" /note="contains similarity to Pfam domains PF02769 (AIR synthase related protein, C-terminal domain) (2), PF00586 (AIR synthase related protein, N-terminal domain) contains similarity to Interpro domains IPR019825 (Legume lectin, beta chain, Mn/Ca-binding site), IPR000728 (AIR synthase-related protein), IPR010073 (Phosphoribosylformylglycinamidine synthase), IPR010918 (AIR synthase-related protein, C-terminal)" /note="Predicted" /db_xref="GOA:A8XSV0" /db_xref="InterPro:IPR010073" /db_xref="InterPro:IPR010918" /db_xref="InterPro:IPR017926" /db_xref="InterPro:IPR029062" /db_xref="InterPro:IPR036604" /db_xref="InterPro:IPR036676" /db_xref="InterPro:IPR036921" /db_xref="InterPro:IPR040707" /db_xref="InterPro:IPR041609" /db_xref="UniProtKB/TrEMBL:A8XSV0" /protein_id="CAP35553.1" /translation="MTKFHVKLYSKAVESRKVSQIQRDFEKKFHRKLDVSVEYCYHLI VDEPDFIDTNWSKLSNLLSHSPFEKYVWRESILNSKNGKVIEICPRTAVKTATCTNIL NVFDSADIRNVEKIERGIRYLVPNDVDENDFFELAADKMTEVIYSTDMNFDNESHSIE NVTIIDVLASKQNLIEANEKLGLALDQDDLDFYYDFFVIKVKKNPTDVELFDLAQSDS EHSRHWFFRGEIWIDACEREQSLMGSIRDTLKYSNENSLIAFNDNSSSIRGFERVWRL RPSDPTTVSSMNAICSSSHLIYSAETHNFPTAVCPFQGATTGTGGRIRDVHATGRGAY EIAGTVGYSFGNLNIAGLDLPWEDPSFVYPTSISEPAKIAIEASNGASDYGNKFGEPV ICGFARSFGLKLENGERCEYLKPIMFSGGIGTIDEDEVKKEPCAVGQKVVKIGGPVYR IGVGGGAASSVSVQGNRENQLDFAAVQRGDAEMGGKLHRVVRACAERNGGNPLTSIHD QGAGGNGNVIKELVEGCGVTVQSDAFQLGDESISLRELWTAEYQENDAALVNPSLLEA LQTISEREKCHVSVVGDVMEEQRVKLVGKSGEIAVDLDTRQLGEREKKCFKLKSVPRI LKKLELPKNLTVREAVGRVLKLPTVASKRYLTCKVDRSVTGLVAQQQCVGPLHTPLAD VAVVALSHFDTVGGAVSLGEQPIKMLIDAEKGARMCISETIMNLIWAPITDLKVSKTR YSKKKLFLLKDVKMSGNWMWAAKCEGEGARLVEAVGGLCQGLREIGCAIDGGKDSLSM AVTANGEVVKSPGTLVLSAYAPCTNVSKVVNPSLKATPGSKILWIKCGGVKGKFRLGG SALAQVYSQIGDDCPDIENFSEISHVFSIVQDLLNEDQLVGTVRKPKILAGHDISDGG LITTILEMAFAGNVSIDIDIQKETDPINILFSEECGIVLEVSDAENVMKRCQSSVIEC SVIGHATPEYGSDAHVKIQVNGKMEINEKLVDLREEWELVGDKLGEHQTNLKSLEEAK NVRKDCKKIQYKCDFEWFYHPSFIYHEQYFSTAPRVAIIREEGSNGDREMASAFTLAG FQTFDVTMSDMLKGHNLNSYRGVAFVGGFSYADVLGSAKGWAAGIQFNEKVSQSFKVF RSRSDTFSYGVCNGCQLMAQLGWVGDEDDESESVTVFLDENECGRFESNFGPVKIEQS RCIMLSGMENSILGLWSSHGEGQFNYRSSQNLENLRRNGQVCVRFCDDLGMTGADYSK EKLPYPWNPNGSIDDVAAICSRDGRHLAMMPHADRSFLTWQWADPDDVNWNTRFDQQS VALSPWIRMFRNAYNWC" CDS complement(join(287768..287985,288033..288148, 288196..288668,288715..289065,289117..289359, 289473..289748,289797..290090)) /gene="Cbr-lron-5" /locus_tag="CBG_18027" /standard_name="CBG18027" /product="Protein CBR-LRON-5" /note="C. briggsae CBR-LRON-5 protein; contains similarity to Pfam domains PF00560 (Leucine Rich Repeat) (3), PF12799 (Leucine Rich repeats (2 copies)) (2)contains similarity to Interpro domains IPR000483 (Cysteine-rich flanking region, C-terminal), IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)" /note="Predicted" /db_xref="GOA:A8XSV1" /db_xref="InterPro:IPR000483" /db_xref="InterPro:IPR001611" /db_xref="InterPro:IPR003591" /db_xref="InterPro:IPR032675" /db_xref="UniProtKB/TrEMBL:A8XSV1" /protein_id="CAP35554.2" /translation="MRILVLILFMSTFPSSRADLCAHCDCDFLSHTVVCNRPSLLVRT VSMLPNIQQLHLNSLNLPQPPHFLFHPNLRVLRMSRCGMHEVPGSTFLPLPGLEVIDL SNNHLETLPPTVLRSLKFLRVLILTNNRISNLDQLAWILSPGVVLEQLDLSGNPIAIA TSMTVFPPVRQLFLSDTRMESVNETVIMFKKLPGKCEKDVCRHIPIHNLNISLITTID FSSNRELEIDSGALDIFSNATFVDLSNTRLPIGFEEWLERKSRVKSLNISHCQMPLHE DTWTACGQFLHSLDISGIGAKRLRFSRFCPIRTVFARDNLLSTVYIDAVSIESMHFER NMFSDFPIPPPGVELTELHTLSLSHNLMTSLPPHALQSYPNLQHFDLSNNQLSEIDPQ AFPSIGLGLISLDLSSNQLSSLPHPILPSLLLLDLSSNTISHLDPHFFTGLPMLQQLR IASNPTLFSRCPNRESPCWSDHLDELTSLVDLDISNSGLEFSLHLRHLRTLKSLMLRG NEIRIIDAKSLPENLRTLDLGENRVQFTSNFSKLEHLRDLRVDQNPLRCDCSLYDIVP HLLNQSQVSDPLLYYCFSGSWQYPLLPYLASVKPCINTTRNFYSILITTFIIAFAIVA ALIGGFLVYRKYAERANFVYKRISLVESPVRL" CDS complement(join(294703..294803,294854..294913, 294959..295076,295123..295402,295452..295757, 295804..295914,296118..296122)) /gene="Cbr-lips-3" /locus_tag="CBG_18028" /standard_name="CBG18028" /product="Protein CBR-LIPS-3" /note="C. briggsae CBR-LIPS-3 protein; contains similarity to Pfam domain PF01674 Lipase (class 2) contains similarity to Interpro domain IPR002918 (Lipase, class 2)" /note="Predicted" /db_xref="GOA:A8XSV2" /db_xref="InterPro:IPR002918" /db_xref="InterPro:IPR029058" /db_xref="UniProtKB/TrEMBL:A8XSV2" /protein_id="CAP35555.2" /translation="MWLFLLVALCSFHVPSNAQKSGPPGPMSSHFVDWLIAHGYEQDA FDRPDVGPNGSFGGKRRSGDTVEKEPVIFIHGSGDTALFTQQPLATGFSRSIQYFLEQ NYTESELYATTWGDTWGSGSMLDTYSTIHTCGNLIYLRRFLEAVIGYTGAKKVDIIAH SVGVPLMRKVVKGGTLIGTDGNCTLGPPLGAKVDTFLGIAGPNFGLCVCQLAQTVPAW CNALDGLYPGYTCQDQLWCGYTSGSCKQENYSNLLQKTNDDPNREGDHVYAMWSDVDE VLLNRGMVWGKPTARIPGMNGRWISDRNGHVAMKDLTELRQFEAVVHHSI" CDS join(301728..301782,301855..301936,301987..302203, 302892..303158,303205..303291,303293..303309, 303337..303478,303527..303622,303672..304021, 304075..304291,304335..304478,304523..305124, 305173..306066,306115..306234,306281..306431, 306483..306794,306844..307089,307092..307346, 307392..307614,307662..307900,307945..308096, 308145..308315,308361..308470,309581..309717, 313125..313242,313288..313619,313664..313804, 313852..314560,314606..314860,314907..315046, 315091..315407,315455..315566,315613..315798) /gene="Cbr-sel-2" /locus_tag="CBG_18029" /standard_name="CBG18029" /product="Protein CBR-SEL-2" /note="C. briggsae CBR-SEL-2 protein; contains similarity to Pfam domains PF06469 (Domain of Unknown Function (DUF1088)) , PF02138 (Beige/BEACH domain) , PF00400 (WD domain, G-beta repeat) (2)contains similarity to Interpro domains IPR000409 (BEACH domain), IPR010508 (Domain of unknown function DUF1088), IPR001680 (WD40 repeat)" /note="Predicted" /db_xref="GOA:A8XSV3" /db_xref="InterPro:IPR000409" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR010508" /db_xref="InterPro:IPR013320" /db_xref="InterPro:IPR016024" /db_xref="InterPro:IPR023362" /db_xref="InterPro:IPR031570" /db_xref="InterPro:IPR036322" /db_xref="InterPro:IPR036372" /db_xref="UniProtKB/Swiss-Prot:A8XSV3" /protein_id="CAP35556.1" /translation="MDISETEYNDSDPPVQENGNGKAVVEDEVNDEESNMETVDLGLD DKTSDASSQNVFKNIDNEPSDDQQNVEESENITLEKPEEISAPPTVVSTSQDVSPPPA IESLPPLLEGKELELEDDVTSSLPRLLSKTTLIHSNEEGADETIQRLISSLHSNSPNM DRTQIVDHLFNLLVGGHFDQESKFVIEHVANVDHMLTLLSHCDCDLQNEIWSLFLAVM KKSNRNLEACTRVGLISKNFFLNLVLDLLPEAPPLLADLLVQIIAALVAYSINVKQTK HLLRALRSTKDQWPPNSLKLLHVLKEMPQHDSADVFFSFPGKDQSGIILPPIKTMPYQ QGWTFATWLRMEPLNSVTFEKEQPVLYSFRTSKGIGYSCHIFGNCLVVNVEKAKGKEQ SRCVKAELGARKWHHIAIAHCYSRWGRSDIKCFIDGQLAETIELSWVVTSTTSWDRCS IGVSADGAVNTAFCGQMGAMYLFAESLSLQQANSLFCLGPAYQSTFKHDSETSLPEGY KKHLFDGHLHSSLVFAYCPKNCHGQLCLFTPPKTAANTYFVQIPHAVMKEGVEVITTH SIHKSLQSVGGIQILLPLFAQIDLPSSHDNTIDGDVCQTLLSLISLLLSSSQSSQQQL FHSKGFLIISSCLQEASPSHLSMKVLEQIIHIAKFLLRCPAGGPLLKHLFDYILFNPK LWIRARPEVQVHLYQYLATDFLANNNFSQMLRRVPTVIEMCHTLKHFYWLALPQTVSD YTVEERPENFATAEIVSIRSAILTFINRIIISSNSPDEEEKARDQEIHTLLNLLATVR EDDNLYDVLALVTRLLAEHPAIMIPAIDKNKALGIIFNLLAAPNELIRIPALKILGFF LSRSTLKRKTESMGSQNLFSLIGERLLSHKRTISLPTYNVLLEVLVEQMTPTFTYAAH QPAQPDWKFENPHLLKVIAHVISQCEETESLVQIKKCFLIDIINLCRESKENRRTILQ MSVWQDWLIGLAYVFHTSESQNEVSELVWEAFSILLHHALRHEYGGWRVWVDTLAIAH SKVSYEKFKRRLAEAKAKAEKAETGEEAKMEPTPVYRAPEFAWSEVHIRLLADLLSGI ERTVEEWKTQEGGISDQCNASENQVFVGNVVHVISQLADSLIMACGGLLPLLASATAP NNDMEIVDPCQQQLPISVAASFLMRFAKLVDTFVLASGVSFSELEQEKNMPAGGVLRQ SLRISATVTVRHILASRIQQPDTPRYETNSAKKNQCIMDFVKEALENFSPEGLENVER LVQDSDITRIKGVVYRDMVEENRQAQFLALSVIYLVSVLMVSRYRDILEPPSSPSPFF DSTTTKQENAERGEKLFEFSHNPLFLELPESSSEAVANGKVANDGDHASIKNGSDHSE NGADEETEEKGEQGQGDNGGTIAAIKVANSDMKNDGNEYNEEELKKMHQSNGRRPSTL MPPQQTAERRAYLTTKLQTALETCAPLLREMMSDFRGYLQKTLVGTHGQEIMNDTKVL ETLRNRNASVIELVMLLCSQEWQTSLQKHAGLAFIELVNEGRLMAHATRDHVLRVANE ADFILNRLRAEDVSKHAQFEAESREQLNARYEEYSRCDLLIVSGRLRDSLNATRLLDK MSAILTDGDDSKSGSQFWKLDVWEDDSRRRKRFVPNPYGSRHEEANLPEGEKNEEPEI SEQERIRKILKGLFSQRHATTTSTGGQELVDESDIDKWAQEVDPTPSSQSACFSTAAK LIVPGVVVPGTLSVTASDLFFDANESDPNYKKQCAQVLRYCEALHARWNLQEIRAIFL RRYLLQNTALEMFLASRTAIMFAFDSEDTVRKVVYQLPRVGVGVKYGLPQSRKTSLMT PRQLFKHSDMCAKWQKREISNFDYLMFLNTVAGRTFNDLSQYPVFPWILTNYTSDTLD LSVASNFRDLSKPIGALNEARRKFFTDRYASWDDDLVPAFHYGTHYSTPAFTLNWLLR LEPFASMFINLHDGKFDHPDRITHSIKDSWDRCQRDSHDVKELIPELFYLPEMFRNSS KFNLGRRADGTLVDDVVLPPWAESPEHFVLMHRQALESDLVSCQLNQWIDLIFGYKQR GAEAVRATNVFYHLTYEGTVTQKMAETPGQVSAIEQQILSFGQTPSQLLAEAHPPRHS IMTMAPTMFRRHDDDLCMMMKYISNSPVVYLAANTFHQLPHPTVVGVAQNLVFSLNKW DNSYSYGSTQRSALSMDPSNVEGQVALPLTADPQLATAASTTPIARRHLGDAFDQRLQ VQCSNFVTTTDSKYIFACGYPDYSFRIVDTDSGRVRQAVYGHGDVVTCIARSETSLFS DCYVVTGSMDCTVVLWHWNGTTGFIAGEYNQPGEVPSPRSILTGHEASISALCVSAEH GLVVSGCEDGVILIHTTASDLLRRIRGHGTVTQLSMSRECILLVLFDSKRMTTYSSTA RKLNEVLSEEKIECVTVTRDGEFAVTGAVNGRITIWRMFPLNKLYTYQPLNSAVRSVA VVASHRFILGGLDSGAIVVFNADFNRWHYEYKHRYIQNSSATKPAQASPQK" CDS complement(join(309835..310010,310611..311089, 311133..311374,311417..311581,311624..311656)) /gene="Cbr-mab-21" /locus_tag="CBG_18030" /standard_name="CBG18030" /product="Protein CBR-MAB-21" /note="C. briggsae CBR-MAB-21 protein; contains similarity to Pfam domain PF03281 Mab-21 protein contains similarity to Interpro domains IPR024810 (Mab-21 domain), IPR020950 (Protein male abnormal 21-related)" /note="Predicted" /db_xref="GOA:Q9GQ38" /db_xref="InterPro:IPR024810" /db_xref="UniProtKB/Swiss-Prot:Q9GQ38" /protein_id="CAP35557.2" /translation="MLGHNQNVVYQVNTFYNEKVQQRKARVTKNVHRIAKVVQEILKE VEAQEPRFINTLTETSTGRFDGIVVHSPSEYEAVLYLNQMGVFNFVDDGTIQGCAVLK LSDGRKRSMSLWVEFITASGYLSARKIRHRFQNIVAQVLQTPQFSEYCKLLQDNTDVR VRVDDKYTVQITCAFRCNGIWPRSASHWPLAGLPWPNTALANQTKAEGFDLTSRETAI TQHNNPNKQASTMEADAWAMKMHGAENMLLTGGRQKTLSILKCLRDAHMDFPGTPVTN YILKTLVLYECEKHCSEYEWEDTNIGDRLVGVLLQLVSCLQCRRCAHYFLPSLDLLRA KPTHTIEHSAKLTWHLVRKLMIDPNALQTL" CDS join(316378..316453,316497..316562,316608..316970, 317014..317212,317296..317497) /gene="Cbr-asb-1" /locus_tag="CBG_18031" /standard_name="CBG18031" /product="Protein CBR-ASB-1" /note="C. briggsae CBR-ASB-1 protein; contains similarity to Pfam domain PF05405 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) contains similarity to Interpro domains IPR008688 (ATPase, F0 complex, subunit B, mitochondrial), IPR013837 (ATPase, F0 complex subunit B, mitochondrial, metazoa)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XSV5" /db_xref="InterPro:IPR008688" /db_xref="InterPro:IPR013837" /db_xref="UniProtKB/TrEMBL:A8XSV5" /protein_id="CAP35558.1" /translation="MLSRLSSPQLCSRIVVVTRGVASAGQVTAHSSDNSIGFFEKISY RFKGVPLPTETEAPKSMFDACNKEWSAPELLPAVPKDFKEHPDRDLTNYPYPSRPMYP PKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFY LLVSRTAGYKIDAGLYKDYQDRVGFFKGLIQEDLKEAVEFRKTSAQQTESLNALKESL PTSFKESMQLQLEAAYRKNVQNISGEIKRRIDYLKETEETKARFERDQLLKLINESVE KQVSQKDFQEKFLQNAIQQLKGIAV" CDS join(317707..317796,317841..317918,317964..318200) /gene="Cbr-apc-11" /locus_tag="CBG_18032" /standard_name="CBG18032" /product="Protein CBR-APC-11" /note="C. briggsae CBR-APC-11 protein; contains similarity to Pfam domains PF00097 (Zinc finger, C3HC4 type (RING finger)) , PF12678 (RING-H2 zinc finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR024766 (Zinc finger, RING-H2-type), IPR018957 (Zinc finger, C3HC4 RING-type)" /note="Predicted" /db_xref="GOA:A8XSV6" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR024991" /db_xref="UniProtKB/TrEMBL:A8XSV6" /protein_id="CAP35559.2" /translation="MEPEIGSGTSDESETQQNMSDENNSPEQKVVRERKPLVGIPLES NTRLKIAVKKLHVCGEWKWLQGGEDTCGICRMEFESACNMCKFPGDDCPLVVGTCRHA FHRHCIEKWIAAPSNQPRAQCPLCRQDWQIAD" CDS complement(join(320964..321080,321154..321213, 321216..>321374)) /codon_start=1 /gene="CBG18033" /locus_tag="CBG_18033" /standard_name="CBG18033" /product="Protein CBG18033" /note="contains similarity to Pfam domain PF01133 Enhancer of rudimentary contains similarity to Interpro domain IPR000781 (Enhancer of rudimentary)" /note="Predicted" /db_xref="InterPro:IPR000781" /db_xref="InterPro:IPR035912" /db_xref="UniProtKB/TrEMBL:A8XSV7" /protein_id="CAP35560.1" /translation="STSSHTVLLIQTSSRLDSRTWGDYESVTDALDAICNMFEEFLSK KSACPVTYDSQVYEFLDKLSDISMMIFNRETGQYIGRTRAWIKQQVYEMMRGRCQHPE GGEKVIVGY" CDS complement(join(321770..322029,322080..322615, 322659..322760,322811..322932,322980..323492, 323522..324042,324085..324292,324336..324767, 325066..325323,325364..326114,326163..326455, 326505..326678,326723..327037,327087..327152, 327222..327389)) /gene="Cbr-smc-4" /locus_tag="CBG_18034" /standard_name="CBG18034" /product="Protein CBR-SMC-4" /note="C. briggsae CBR-SMC-4 protein; contains similarity to Pfam domains PF06470 (SMC proteins Flexible Hinge Domain) , PF02463 (RecF/RecN/SMC N terminal domain) contains similarity to Interpro domains IPR003395 (RecF/RecN/SMC), IPR010935 (SMCs flexible hinge)" /note="Predicted" /db_xref="GOA:A8XSV8" /db_xref="InterPro:IPR003395" /db_xref="InterPro:IPR010935" /db_xref="InterPro:IPR024704" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR036277" /db_xref="InterPro:IPR041738" /db_xref="UniProtKB/TrEMBL:A8XSV8" /protein_id="CAP35561.2" /translation="MPPKKSTEPPPQSDESASDFEDEPERKKQKKTKKTTSQKRGNAQ KEGTPDQEAELKKAADQIFDGSDGEDDDTDLFALTIPPKPDFLIKTTKKDRLMIMNVE VNNFKSYYGKASIGPFHKSFTSIIGPNGSGKSNLIDSLLFVFGFRASKIRSAKVANLI HKSNGRNPDSCTVTIHFQRINDVPGHYEIVKDSGFQISRTAYKNSSSSYAINGRAASR ADVEAHLRQADIDIEHNRFLILQGEVEQIAMMKPVKQTKSETGMVEYLEDIVGSNRLE PFVKRFQRRVNRINCDLTQQRITRDHARNSKIAMEGQVRAAIEFLKKENEATLIEMKL DQRRRKLYLDKVAPKQAELDKKEEELNSVAEKIASNKTEATIMEDEEKKMKKEGSKID KEIDRLTKDYDDLTAEEKRRKETIKRYETDLSKTEAELEKEEKKKQTLIAVPEKAEKK IKKWKEELEQLKEIEKTANEEASKNLDEFEKRTDKLKEDQKRIQETWNECNTEAINVR REATLARSDFEDMKTAATSGSRKLEKLKEQLQASEEKYNEDKAELEKLKPAVGTLRER KNDLETKLPGVRNDYRQTNVKVSISQINSQLEGIRQQNAASVGSSQVMKAIAREREAG RLKSFVGRVGELAFIDKKYEAAICTNYGAVLKQLVCRDESDSARIIDIANSEKLGRQY VVSLDRYKFCDMNLLTPVPPGTNPGPRLIDLIECDNPEIKAIIFKEIRDVLVAKDTKE AIEMNKTSGKAVCTLQGSLVSVTGNITGGGSPRYGDIETDKSKKPKQVTPQDKDLEKK LTEEVTQLKQKSDSLRQEEQKLDSELTRIRHEVAQSSKRLDTLTGSVDAEGTTVENLK KAIQAQEKEVTKVKVDEKDIETKQKVVEEVEKKSNELKEKSAGYKEQQAQIQSKLDDI FKELVGCHRDEAKDASQKCQKIEKDTAKEQASVANSARNIAKCDENIARLTKDKEKKT RMCDELKEKAIDEEGLATKKSDIDELSKKRKEWEEKYNELTKKQSALSEDETKLSLEL KVLEEAMKELKDSLAGYAAKTNEIEKRVSECILSGLQINRIPRFQFLIESSRPEDLTM QVDDLPVDENQSPEEAERHRKHIASAISDRAYALEYGLRRKGEEDTEEYENVDVDTKI PVELLAPEQVDEITDHDAKQLQHNLQQCKLALETAKQNVDLSCIATYVIKVNQFNEEV VKLAEVNANFRRHNERLQKLKKDRLEEFHSAFEFIGKHLVAVYKMLTDGGDAKLEYID KDDPFKEGISFMVRPAKKAWKQIQYLSGGEKTLSSLALIFALHMFRPTPFYVMDEIDA ALDYRNVSIIAQYVRQKTENAQFIIISLRNNMFELANRLVGIYKVDGCTKNVAIDPQS VCELAKSISASLGQITCTLPEEVTERFNETVSRQHKEITAQEKQYVNFPSSNEISKAE KIVSVEGRVRKEMNHTTRETPEPSTSQSRTTAEDNATERAVSTRPGSRAIHMKIPNPR LVERSSSASTRSPKRERNTGPDGVTFLINFIFKSIFQASPPTKKSNTTNSSPKTLSPK TTGPSNDNKPVDDDEYDFED" assembly_gap 328236..328252 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(328316..328415,328446..328467,328557..328644, 328764..328886) /gene="CBG18035" /locus_tag="CBG_18035" /standard_name="CBG18035" /product="Protein CBG18035" /note="contains similarity to Pfam domain PF03091 CutA1 divalent ion tolerance protein contains similarity to Interpro domain IPR004323 (Divalent ion tolerance protein, CutA)" /note="Predicted" /db_xref="GOA:A8XSV9" /db_xref="InterPro:IPR004323" /db_xref="InterPro:IPR011322" /db_xref="InterPro:IPR015867" /db_xref="UniProtKB/TrEMBL:A8XSV9" /protein_id="CAP35562.2" /translation="MSIPAVKMVLVYVTAPSKEVAMKLARLSPETKRKLQLLNHLYMW KGKVEEDQEHVVVMKTVSSNVEELSKRVRSLHPAETLCFITLPIEKATSDFADWIIDS TKKPQISQ" CDS complement(join(328998..329120,329169..329261, 331369..331491,331538..331663,331713..331848, 331949..332088,332139..332329,332383..332479, 332526..332633,332680..332793,332887..332946)) /gene="CBG18036" /locus_tag="CBG_18036" /standard_name="CBG18036" /product="Protein CBG18036" /note="Predicted" /db_xref="GOA:A8XSW0" /db_xref="UniProtKB/TrEMBL:A8XSW0" /protein_id="CAP35563.1" /translation="MYDSVFDNYNLNVALFICIYFTMNDVPLYCMNQRPLMRKKPKTY IRQEDPTSTRQTELLILQAQTILEASTQDGVLRYEDFSTKFSKAVKKNFEVEFDRIHT LYGWSLADIVGRMTFRKHICSINEDEKGLCFEFTLIQQLATTSSSSELSKQVDHSLRD ISTSAEVNPVVCKGFLANAGTSFESTRLSKKTPAEYSMKMMSWPWLSEMKRTERRDLL RKFFESAENITQNDIHVQREAKNLGTDLWKASIPNFPHVMWLLHELSKRKPNGFKFPM FESEINNVIPNSWKLMWEDLSCEDLIPEPSTLILLDLIIPSELNDPQIVEVTELVNFI RFHEIRDNELSLIYHFVDSAPSSKSALEVHKFLCETCSGWEDEYNDASGLLRVEAVFQ GNKKMFHDENGSYTTKQHHNKIAVPMCFLPITNRYNNGNRFADV" CDS complement(join(334420..334624,334668..334842, 334886..334996,335039..335150,335196..335284, 335331..335388,335431..335622,335671..335952, 335999..336110,336168..336268,336315..336350)) /gene="CBG18037" /locus_tag="CBG_18037" /standard_name="CBG18037" /product="Protein CBG18037" /note="contains similarity to Pfam domain PF10508 Proteasome non-ATPase 26S subunit contains similarity to Interpro domain IPR019538 (26S proteasome non-ATPase regulatory subunit 5)" /note="Predicted" /db_xref="GOA:A8XSW1" /db_xref="InterPro:IPR016024" /db_xref="InterPro:IPR019538" /db_xref="UniProtKB/TrEMBL:A8XSW1" /protein_id="CAP35564.1" /translation="MTSAVGYENAIEGWRNDYVSNRNSKKGWEILENLVKMQTEGNQQ METDEMSENCAAFDDFSTNQLIKLIIGDFTVKDLLVDHQVVLLEFIPSAHPNILRHVA RIIREKEGALPFLKTESIAVGIAFARRITDSDAGEEIGRLLAHLVDNEKICDELKFIL KNNTGRNNAMNRASIFSIATERAGISADASCIRWLYEEILKVVLDKEDMLAQLDAINI FGDIALSGKQNAEKMIEWNIVEKISELMERSRQNPDHGEMHLYGTRFFCYLARSCPQV LKTFPDFVNRLMFEIRIFNDLGITDRLAAFDHFGCLCYSVEAKEMLEDMFKNTNTLDS TLAAAGAAFAMGSIEMKRCTIQAITLIFENATDAMASSWYGLMGDKALTQVALDNVKK PFPELKNCIYDFWQQVFKYPTLVQKFIAFPGFINWSLDEKSENAPEYEMRKRQVIRRV IDLSEKESNILNADAELIGRLKKYLQPSAAPAPRIEEMAL" CDS complement(join(336540..336694,336742..336824, 336869..337060,337105..337252,337798..337891, 337937..338035,338082..338188,338347..338537, 338585..339073,339102..339181,339216..339314, 339361..339452,339499..339625,339682..339822, 339868..339912)) /gene="CBG18038" /locus_tag="CBG_18038" /standard_name="CBG18038" /product="Protein CBG18038" /note="contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR019775 (WD40 repeat, conserved site), IPR001680 (WD40 repeat), IPR020472 (G-protein beta WD-40 repeat)" /note="Predicted" /db_xref="GOA:A8XSW2" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR019775" /db_xref="InterPro:IPR020472" /db_xref="InterPro:IPR021772" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/Swiss-Prot:A8XSW2" /protein_id="CAP35565.2" /translation="MSGASNTSQSGSKKKLSFIIRDEQEPLHRSAVSALQYDALHSRL FTGGSDTIIRTWSVPQHKDAFSARGGVRSAGKNSPVQYQSSLERHTDWVTDMVLCGNG KLLVSSSNDTTVKVWSIERDNKHGYLDSLNLHTDYVSCLAYAPLAEKVVSASFDRNIF VYDVNSNFNNFRVLVNNLLGCKNSIYSLATTPNLSHCLFFSPHHRFFSHFQQIRMFDP RTNDKPMKMRGHSDNVRALLLNDDGTRALSAGSDGTIRLWDIGMQKNIATGIAHEEGV WTIQVCLSLFNIHEKLIFQVDASFKFVYSGGRDRYVLKSPVNDLSKFQVLFKEEAPVK KLLLSEKENPSSIWVGTWKSDIKRWSLNSANQNSNGGDEEGVSSFSTYYTTCKPRSSS PPPGITAPKHIQRLTDARELQNTPELMISGAPAINKYKILNDKRHVLTSDTEDNVALY DVLAGKKVKEYGKRALENVFEEKSKTVYVPSWFIVDSKSGMLQITLDELDVFSSWLTT KDAGFDDSDKETKVNYGGMMLRSLFERWPPCKLATAEAGESDEVQKATSHYYTLPEHT PFIVCEGNGRPLFRLLVGDAGNEFESGELAQCVPPWVTDMIERNVLPKFNKMPFYLLP HPSTNSKQPKKDRLSATEMLLVKKVMEHVYEKVLGNVDANTVPLNQIHTKIEMYCNDQ KLEPETDLRTVKHFYWKQSGELLLYYRPVKN" CDS join(340631..340739,340784..340843,340889..341010, 341025..341160,341211..341546,341592..341744, 341786..341895,341938..342225,342281..342564, 342613..342827,342945..343070,343505..343605, 343652..343807,343852..343965,344010..344318, 344363..344453,344825..345259,345308..345399) /gene="Cbr-sel-5" /locus_tag="CBG_18039" /standard_name="CBG18039" /product="Protein CBR-SEL-5" /note="C. briggsae CBR-SEL-5 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8XSW3" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/TrEMBL:A8XSW3" /protein_id="CAP35566.2" /translation="MPLGLFSSGKAHVLSDEKPAGSKKKEPKQLSENKCKGVTLKLDH TRVTIEKQIAEGRGFAIVYIACDRKNNKFALKRQFTKENQKQLDACCREHSFLLVFLL IAKFQKQCAGQKNIVEFVDSYVNCLGNGIWECMLLTEYHQRNVLQLMNERISQNQYLT NTEILSIFSDLCEAVSFIHHRPQPIIHRDLKVENVLISSHKSPNYILCDFGSATTQVL SIEKFGAEYVKSEIERNTTMCYRSPEMIDFYSGQVLGLKGDIWALGVLLYRLCYFCVP FEESPLAIQSVNYQFPALPNISDEAKALIYMLLDIDINRRPSIYQTASLVFEASRRNL PVEIQNKKFSDSTLSIRECVQLMKDGNKPRNKRESSPSCTETQLSSGLPQTVSQPVSA IPIVSSSVSGTGETSVAPRLRPKATNAVTNVPSISPVPPVVLPNLKFPSKTDESSDVH HRQSFSGEDQLNTRNQESAGPLSCPLVKPAELGFIDLDKPALPRDRAQTDGKRRIPQE ANIIFQQQHRRNVSDTSQISRSAFKPYSSQQIISKSSTQVVRSVEDMSNHSAVSDSAE WNPFLAAPFSNNFKHGSESGFKMDDSHFGMVFDEIRRREVPAELDSDTSSIDSRDPFG AAPFDQLTVSTSSSTQPVSLPPAADEDDEQKLISDSDEEDRANSIEIIDIKKKESNNE DDSEIDEQRMNDRRRYSYENIDGVGDDASSDSRGKTDRDDSEEEEDDDSRRGGDTSHD EDSQNTVGSEDGEGGNRPLLEDDGLEDDDDHELMSSFSSNASFPLFIGTSSPLTQNAI TNPFLRDEMTPKMVSPLMLSAAPERNSSADDDWDLGDRWTDRRDTVFERPTSQNHNIF APATLPRQVTPLVCRFKFQPELPTAAPVSIIPSLSNTSFLEAARVSEYSTLTEPQIGT LISVGAPSEPPPPIKKTEIVSFGETTECKTEDNAVFSVTSRKKEKIEKHLKKEKKKEK KEGKKEKIILEEYREKGSSDPETDGSEAEMWTTDGSTTLSKKKKKSTFGLRSSHPSII ANDLQFASPMPPAVKKLSKEKKSSMTGKNASFVNTSFQPEDHDDTNEM" CDS complement(join(346312..346383,346428..346616, 346664..346807,347022..347234,347277..347381, 347427..347555,347602..347814,347865..347990)) /gene="Cbr-idhg-1" /locus_tag="CBG_18040" /standard_name="CBG18040" /product="Protein CBR-IDHG-1" /note="C. briggsae CBR-IDHG-1 protein; contains similarity to Pfam domain PF00180 Isocitrate/isopropylmalate dehydrogenase contains similarity to Interpro domains IPR004434 (Isocitrate dehydrogenase NAD-dependent), IPR001804 (Isocitrate/isopropylmalate dehydrogenase), IPR019818 (Isocitrate/isopropylmalate dehydrogenase, conserved site), IPR024084 (Isopropylmalate dehydrogenase-like domain)" /note="Predicted" /db_xref="GOA:A8XSW4" /db_xref="InterPro:IPR004434" /db_xref="InterPro:IPR019818" /db_xref="InterPro:IPR024084" /db_xref="UniProtKB/TrEMBL:A8XSW4" /protein_id="CAP35567.1" /translation="MSSNVLGQTLRSSKNAVQKAFVATAPSSDMLRFRSPVLQTNTTK LARYGGRHNVTVLPGDGIGPEMIHHVERILTTVQAPIDFEEVNLTSKEDASEDLAEAI TAIKRNGVALKGNIETKFDNPSFVSRNLELRRQLNLYANVLHCSTIPTVPSRHTGIDM VIIRENTEGEYSGNEHEAVNAPHPRVVESLKVVTREKSEQITRFAFQFAKKYGRKKVT AVHKANIQKLGDGLFLKVATDIAKNEYPEIEFNAMIVDNASMQLVSRPQQFDVMLMPN LYGNIISNIACGLVGGPGLVSGMNIGEDYAVFETGTRNTGTTLAGKDMANPTAFIRAS VDMLRFLGLQMHADIISDSLFRTLVDKRIHTADIGGTAKSSELVQSVIEFIEKELEDR NYRV" CDS join(348499..348600,348644..348778,348826..348948, 348992..349218,349262..349593,349642..349854, 349906..350011,350059..350149) /gene="CBG18041" /locus_tag="CBG_18041" /standard_name="CBG18041" /product="Protein CBG18041" /note="contains similarity to Pfam domain PF05292 Malonyl-CoA decarboxylase (MCD) contains similarity to Interpro domain IPR007956 (Malonyl-CoA decarboxylase)" /note="Predicted" /db_xref="GOA:A8XSW5" /db_xref="InterPro:IPR007956" /db_xref="InterPro:IPR035372" /db_xref="InterPro:IPR038351" /db_xref="InterPro:IPR038917" /db_xref="InterPro:IPR042303" /db_xref="UniProtKB/TrEMBL:A8XSW5" /protein_id="CAP35568.1" /translation="MLRKYSLFYSFRNASTLLSSLDGLTNRTNGDKLLTYSERFSKLY AQTAPETRKALFVNLVTNYGVNKEALNHAISLYLKNDQMYPEVRTAATATYVNLIKGI GNLSGGVAQVCEMRANILALLKRETDKTTTSYLRHIELATREVLTSWFCLGNLKLERL TWSSPGDILQKVAEYEAVHPVRGLSDFRKRLGPLRRCFYFSHEALPRNPLVMVHVALV SEIADSVQEITKRGDPTGKEEDQTTSIYYSITSTQAGLSGIDLGNMLIKKVATQLQKD VPSVTTHSTLSPIPGFRPWLIRNLKGNSEYPSIMNEKVVEWMSELSGRKMTETESTET LLKVISNEKTKKEQLNAIKHILMYACAHYLCKAKRNGMALNSVANFHIRNGAELYRMN WNGDTSHRGINNSFGIMVNYRYDLDMVHENSAAYTERKQMKINENVSKFL" CDS complement(join(350731..350889,350942..351708, 351756..351976,352030..352373,352751..352874, 352979..353037,353084..353206)) /gene="Cbr-pan-1" /locus_tag="CBG_18042" /standard_name="CBG18042" /product="Protein CBR-PAN-1" /note="C. briggsae CBR-PAN-1 protein; contains similarity to Pfam domains PF00560 (Leucine Rich Repeat) , PF12799 (Leucine Rich repeats (2 copies)) contains similarity to Interpro domains IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)" /note="Predicted" /db_xref="GOA:A8XSW6" /db_xref="InterPro:IPR001611" /db_xref="InterPro:IPR003591" /db_xref="InterPro:IPR032675" /db_xref="UniProtKB/TrEMBL:A8XSW6" /protein_id="CAP35569.1" /translation="MRSLLNFVLLLLLIRISVSEHKKTCEEIEEGFTKEVNARQQQVC TCAENGIFSTVNGFTIECESASLETITANLVSLNGTPIGRLTVRDSSFNVLPASMFDS VSIKQVKFEECKLSGLGPKSFTGLGDSVEYISLRENVLPKISKGAFNGLTSLKTLDMA SNAIEEIEAGAFEGLKSAEHLILNENKLTQLTPKIFVGLKGLKRLTIENCELETLQKG AFQGLDSLEELILSNNQIRDVDWSVFTPLKNIRVLDLGSNNISNVELKSFAKLEKLVL NNNSIDTMKSIKLKDLPALVVALFDRNKIQSINDMDMFGLTRSDRIQTMSLAWNNLSQ ISAKAFQHTPNLINLLLQNNQIEELSSNSTTLVRTPFLAILKKLITLQLSSNNLSIIR SDELPKSLIYLALDQNVLTKIEARALEGMTLKRLYLNKNKMRYLYRGAFDSFEPTSME AIDLSSNAWLCSCNDPKEWLPRWLSEAEEADVSEGPLGCLAIPECGQEEDPNKFHNEK EEVVRSGWITVAATVLTIITIIIMIIIAMLYFKDYKYQFPLRGRRSDSDLHKLIENDP LNLPSDSILVVPAMPKRNPPGPKKTVRFDETS" CDS complement(join(360296..360399,360442..360612, 360659..360959,361002..361490,361501..361702, 361747..361869,361925..362187,362234..362368, 362409..362825,363573..363688,364426..364582, 364768..364881)) /gene="CBG18043" /locus_tag="CBG_18043" /standard_name="CBG18043" /product="Protein CBG18043" /note="contains similarity to Pfam domain PF00013 KH domain contains similarity to Interpro domains IPR018111 (K Homology, type 1, subgroup), IPR004087 (K Homology)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XSW7" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR004088" /db_xref="InterPro:IPR036612" /db_xref="UniProtKB/TrEMBL:A8XSW7" /protein_id="CAP35570.2" /translation="MEYFNTGGGGSGNGTTDPYAVIPQQFGTGAQQPPQQTVYPEYPQ EGVVDYDSYQQQQYRAAQASQQSPSIYYHNQLNQGSYFPIHSASDHDFLGPQQPSAGA TSSSGQQTSAPYQSRTGANKEFMIQHQPLFENSLSSKYFKQRRGNQSGPQQGQQAQQS AQPQQQNQPVRQQNQQQQTNQQSHFMHQQMQAVAQQQQAQQMHQRIHGAAITPQQFMV PPPAMIQSQQMQQVQQQQAHQIHQMQLHQQQQQQQQQQHPRMMPQQQSQQGFHAIQSN HQQNAGHHHQQHHQNQHQHQHNQNHPGQQNIPQNRFMLRDWPIRCVVEGKYQQVIMGE HGATIRDIAQSCHCRVDFIHLSKKERMVLGNSDRILTIHGYAEQASKAVARILDVIQT EAIKDDAMVGADVVLRLRAHNQLCGRLIGKGGTSIKDIMQKTGTNITVSKHVDPPGGY QSLRQDEMLGLSERTIVIRGPSIEAVVQAESLISAKLKKCYESDSHMRVSYRIVNTSL NNQGMPMAPMMMPPIPPQVAGMIPGAPQLFPTPAGVVQIQHFPRPPHQQLTQNNAFLA SGVLQIAPGVTNLRHVRMWVPDNMIGALIGAKGKNIKMIIRDTGAAVKIEAPEEKVQR EAVEAEKKKKKSEDADTEERDGAASGDHPQEFLDDNGTVTSSDAIEEKPKPINERMVT ITGDDYQLLKAQSFVFTKISETTASQPVNTVDGGPYNVKLRTEVCVPTKIIGRIIGKG GQNVRELQRITGACVKIPEEERNGGSSFTNDDGFVEEMTLIRITGTMSSTHNVQFRLA HLISEYYRAGETRPKSSEHKGARPQSGSGKEGGGLDNMDQLGQVPPIATNRSSPKSRS TSKSKSP" assembly_gap 367860..368795 /estimated_length=936 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(369139..369456,369499..369604, 369655..369963,370519..370667,370827..370898, 370945..371037)) /gene="CBG18044" /locus_tag="CBG_18044" /standard_name="CBG18044" /product="Protein CBG18044" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSW8" /protein_id="CAP35571.2" /translation="MSWFFQSKIAKSHFYVWYLGSKEADGVRGSAVVLPVMRQLLKES FKKTPSKATVQVSSSVPIYYNVIPEQLEKNCTTKKLFTGKKTFHIFSFIQKISTKKNK ERRFFSLVQTFKDLSMTWSIDYSYLDYWFQGTVKALYEVHPDLFLFLSRNNNNNGSEC SGSINQNPLRPQRSCSQSRSVSRSTAGFDERSSPLERDQRNRTSDIDAPPRRQAPTIS RRVVDELKNRIIGESRLMNLGRSRESSLNRYESEKRASLSDLPIETDSTRYRMFGDTM LRDTKNKSRSLDDLAADPLVSTFVLISRLLEQHIITVTFEAASLHLLHLVDSRDQNML LTLLGTIRTNGPTH" CDS complement(join(372927..372993,373165..373346, 373418..373489,373538..373675)) /gene="CBG18045" /locus_tag="CBG_18045" /standard_name="CBG18045" /product="Protein CBG18045" /note="contains similarity to Pfam domain PF09360 Iron-binding zinc finger CDGSH type contains similarity to Interpro domains IPR006622 (Iron sulphur-containing domain, CDGSH-type, subfamily), IPR018967 (Iron sulphur-containing domain, CDGSH-type)" /note="Predicted" /db_xref="GOA:A8XSW9" /db_xref="InterPro:IPR018967" /db_xref="InterPro:IPR042216" /db_xref="UniProtKB/TrEMBL:A8XSW9" /protein_id="CAP35572.1" /translation="MRLSQATKICASIVKNSQKTGFGPNRLHRKGTHFVGTEPPALKY HLLQDKKPNEEYGLQGTNHELPGTGKVHMKKDKVYAWCSCGYSGSQPLCDGSHNSIRT PDLKLKPVRFIPDKDMTVWLCNCKQTKNRPFCDGSHKLVADEDKKAGLFD" CDS join(373980..374069,374157..374237,374311..374441, 374488..374695,374744..374917) /gene="Cbr-mrps-34" /locus_tag="CBG_18046" /standard_name="CBG18046" /product="Protein CBR-MRPS-34" /note="C. briggsae CBR-MRPS-34 protein ;" /note="Predicted" /db_xref="GOA:A8XSX0" /db_xref="InterPro:IPR032053" /db_xref="UniProtKB/TrEMBL:A8XSX0" /protein_id="CAP35573.1" /translation="MSSNLIRFVGNHDIASEGKFLFEILSQLRNFGVGRLVTKNEWTR KWPNNPSYMKILRAEPGMDRWLFEGKVYAEWVFRGKNLGVYEFSKDLNRSDWQLVHKH QENSFTSCATPMQEMVLPDSFPLPPLQVHLSQKSARKNGLDEKTISRRAPLALSIDPE FEHLKPFIKQETPQSKSSSIYDEVDKNVLLDLYGNELPVKVEAWNAGPAAFQPRFNAT VMRVEEQPK" CDS join(375922..376011,376065..376185,376232..376679, 376726..376819,376865..376975,377021..377299, 377346..377512,377565..377850) /gene="Cbr-ugt-62" /locus_tag="CBG_18047" /standard_name="CBG18047" /product="Protein CBR-UGT-62" /note="C. briggsae CBR-UGT-62 protein; contains similarity to Pfam domains PF04101 (Glycosyltransferase family 28 C-terminal domain) , PF00201 (UDP-glucoronosyl and UDP-glucosyl transferase) contains similarity to Interpro domains IPR002213 (UDP-glucuronosyl/UDP- glucosyltransferase), IPR007235 (Glycosyl transferase, family 28, C-terminal)" /note="Predicted" /db_xref="GOA:A8XSX1" /db_xref="InterPro:IPR002213" /db_xref="InterPro:IPR035595" /db_xref="UniProtKB/TrEMBL:A8XSX1" /protein_id="CAP35574.1" /translation="MKIFALLSLLLGAVASYKYVIFVPNMANSQTQFCARVAEVLANG GHDVTMLFVTHLSDFKTDVKIPKGVKSYHLDAFIEGITKESIEKEQSAMIFKDTGLKD MPAMMAMFGRFGKMLQEGCRAVIRNKEFMKWLENEKFDVAYAYIYSTCPIGLIHTAKI PSWVWLNSGPLMDYVAETTGVPIIPSYVPPVMMESHDLMGFVFRTKSFIGHFLMTLFH RKMSSDAETQIFREELNDPSFPHTMDIGAKCPLIIVNSNELYDLPRPTLAKVVNIGGL GVGFDSAKPLTGEFKTISETGKGMIVFSFGSVAAAHEMPLEWKNAILDAFSSLPDYQF VMRYLGTDLNDRLPKNVHLSKWLPQKDLLLHNKTKAFISHGGYNSMQEAISAGVPLVT IALFGDQPKNAQIAKKHGFAVNIQKGTISKETIVEALKEVLENDSYKQKVSRLSAMVR AQPMKPAERLLKWSEFLAEFKTLDNLEPAGQKLNFFQYHSLDVIGFLFTVIFLVFYIF YRILRALVRCCCCRKSHEKKKTE" assembly_gap 383279..383461 /estimated_length=183 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(384578..384668,384726..385000,385046..385342, 385400..385663) /gene="CBG18048" /locus_tag="CBG_18048" /standard_name="CBG18048" /product="Protein CBG18048" /note="contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)" /note="Predicted" /db_xref="GOA:A8XSX2" /db_xref="InterPro:IPR000242" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="InterPro:IPR029021" /db_xref="UniProtKB/TrEMBL:A8XSX2" /protein_id="CAP35575.2" /translation="MERRERAKEKEKEQWSGEEMAKKMIASGAFDSGLIASAFKELRN EKPPLNSCISFKNNMHKIRAPDFPIVDDKIFKLTHAPDNFICAAKVAVPEFNRTMIVT QVPDVSTPVNIEDFWRMIFQEEVHSVVLALMPLECSVTLQQIFPILSGTFANHGKMFL NNKKVDSTVAMTAYTLEILPDGCSNSLFTTVYHLHNWKQKRGLDNVGDLVSTIEKVLK TNENTVLMSMNGMGRAGTMLALFTSMLHVQKGKEVNTKEIVDKLRGERCGLIENAEQY GTVYRAMALWFKNKSTDEEVQKKVNEFAPCVQ" CDS join(386385..386441,386489..386892,386939..387068, 387115..387387) /gene="CBG18049" /locus_tag="CBG_18049" /standard_name="CBG18049" /product="Protein CBG18049" /note="Predicted" /db_xref="GOA:A8XSX3" /db_xref="UniProtKB/TrEMBL:A8XSX3" /protein_id="CAP35576.1" /translation="MDIFNILISHYMTFLLFFLINILMTICGRKSRRPPVKPSIQEPQ QPASDPNYDETQENIQTVDVQEDPLANVRLLTPTLPGGCTDENAAKEAATRHKTNQYF PKLQLQSRRIVNTTSKEELKSMVDALPPHPPQRYRTEIREPAVDKRKEKWKNAHVHWS DTGLVFVIRSHDPCRSKDDVGGDTIDSPSKEDQESTKINSEMPMSDKKEKSKQKTPRK SKEKTPAPLPQSSKRGSQKERKLAPTQEETVKSDNRTPNQATPRTPGIPSTPSSGGIT TGPESLKSENL" CDS complement(join(387959..388241,388289..389134, 389182..389818,389866..391869,391918..393598, 393647..394028,394079..396064,396119..396946, 396994..397905,397966..399356,400781..400885, 400931..401185,401480..401593,401644..402414, 402525..402746,402796..403047,403089..403247, 403294..403398,403457..403693)) /gene="Cbr-cdh-4" /locus_tag="CBG_18050" /standard_name="CBG18050" /product="Protein CBR-CDH-4" /note="C. briggsae CBR-CDH-4 protein; contains similarity to Pfam domains PF00008 (EGF-like domain) , PF02210 (Laminin G domain) , PF00054 (Laminin G domain) , PF00028 (Cadherin domain) (13), PF12661 (Human growth factor-like EGF) contains similarity to Interpro domains IPR001791 (Laminin G domain), IPR006209 (EGF), IPR006210 (Epidermal growth factor-like), IPR020894 (Cadherin conserved site), IPR001881 (EGF-like calcium-binding), IPR013032 (EGF-like region, conserved site), IPR002126 (Cadherin), IPR012680 (Laminin G, subdomain 2), IPR012679 (Laminin G, subdomain 1)" /note="Predicted" /db_xref="GOA:A8XSX4" /db_xref="InterPro:IPR000742" /db_xref="InterPro:IPR001791" /db_xref="InterPro:IPR001881" /db_xref="InterPro:IPR002126" /db_xref="InterPro:IPR013032" /db_xref="InterPro:IPR013320" /db_xref="InterPro:IPR015919" /db_xref="InterPro:IPR020894" /db_xref="UniProtKB/TrEMBL:A8XSX4" /protein_id="CAP35577.2" /translation="MKKHRVFHLFLLIFCKTVNLVTTSSPREHIFEFTAPLYNLSVEE NSIGSKYARSENATKIGVPLPEKDANCKFRVAEIAGEKSSLFKAHARQVGDFVFLRIR YKGDNPLNRELKDFYDILVKATCKRRDLSNLETTARIHLRVIDKNDASPLFLVDEQGY EAVIDDDTEPFSTVLRVEASDADIGINSAIYFSLVNRSHDFLVEPVSGWIRTLRHLKP GKYSLKVKAEDRASRLYYYDENEVQAPWTEDVLITVRETKPKKTKTSVDRRKISPNIL KNRQLAAVITLKDAPKEVLVGMKSNEKEHWFEIEPEGKLTEEVRWLLFAKNGTQIPKN TNVTITIGEDYVSKSGFSISKKPIVPVNETVTVQIEHFLEHSVQFNVKEDLMIKTDEM APIGRVLARFNNCTLENPDDVSLMRFSISDPSSNISLPFTISSKSGVLRVSSKLSISE RVYKFKVAVSLHGIQGKKDERDVYVEIVDSNNHSPVWSAKWMRQAPIPLGKPGDVLLK VDATDQDEGDNGRVVYKINSEIPFEINANTGEITLIEVPTKSNNWMVTVWAIDLGLPL SRMSALNLMFYKNGTKVPAKPKPVIIQESENKHSPVFSSFPEVVEVTEDAPIGTLFNK NGKRGVIGKLLVKIFDFQVVAKLQSSDEDAGYNGLIRYVIQDISGSSHEILSVDEQSG EITVASDLTLLMKEKQKVVEIQVVKVSAVDAGTPVKSATRTMKLRIKDVNNHSPHFDE LGDVSTIFIFQPSYYLAISESEKPGKDIFKATANDFDGGNNGKIKFSLGNNGAESSVI SIEPKTGIIKLLNPLDREEQDVHYFSIIASDDGDPARITVTNLTITVDDVNDNAPRCV SQVAKARIPEDLPHGAFVACLAAFDEDVGLNSKLKFLLNAEKVPFRVDHHSGCLLGNS PDVPLDYQKTPNFNLSIEVADHGEPMLSTTCFLEVELVDVPHKHLAIEFDDVAKEASV YENSEIGTEVIMVEAKEMGDEQKVKAENLEYRIIGGNGWPYFSIDQKGTVRTTHILDR EKRSAYWITVEARDAKTDFYKDPRRRAVLHVFIRILDRNDHRPVAKSAMYIASVLENS PANVVIVKVEATDADDIDNDGAAPLTFKIERGDPQSFFRIDLASGYITTSGIRRLDRE KQAEHELWISICDGGEPQLCSNVVVIVKVLDENDNAPTFTQAMHHYNVRSKHIGKLCR IFAVDIDEGENSHLSYNVTEGDPRFSIDENGNIMTSEAIHSDESYALTLQATDHGSPS QQFAATRVVLTAVGSSQKTKKSKNSPPVISGKKSDYVIPISDADQVGLTVGKLEATDA DGDDLWWNIFSGDSDSVFDVRQDTGQLLLAKKVELLKRGELRLNISVTDGQDVDHTTV IIQVSRQISQRPAFSANRYDTLVSERVAVGTQIHTLKATGENLGTKPLVYSLFSIDDI AMEDKIRVEPSSGNVIVMEPLDYEVASQIRAVVQVQQANMKSFSKLILEVTDENDNAP YFVEHTAWAFVDENDSVDDVLATVTAFDRDQDDNGIITYSIVSGNEESLFKIDSHSGE VRLARLIDPEMQHVVSILRIRASDSATISLKDELTLHIKSSKLTSENAKFDRKVYQTS LHDSTRPGTPVLVLNVLHHGAITFKLEPNCTFFDVHTLSGAVHLAKWITKEKQLKTLE CTAYVVNGDGQQDTAKIVAKIIRTNQHSPVFRKQVYRGTVRENMEPGSSVLSNRHLPL VLLASDEDSGSNGLVGYRMLSKADEEMFTVDQYSGAVRTNKAFDFEKIKEHSFYVQAF DMGQPPRQSLMPALVVVTISDENDETPKFASQSLDVIMLLPTASQAVVGGQMSDDADS IGTLRYYIKDSSSPFSVDSKTGIVSVKDFKAFTNEKKHYNVEVFVTDGNQSTSYTMKV TTTSTAENSKFKFTRQEYRASIVENSTLTPGTVILPVATTGEKQVHFTIVNPHEAFFI HHGTGVISATGIAVDCELSPVIRLVVEAKTHEKNPQIAKALVLIDVQNVNDEAPKFIG TPYSITVGPSEIGTVILEPKVIDKDEGDHATISSNDMPQYFKLVGGKVVLAKKLPAIE DQDLKFSFKLIAKDNSSVHQVEEPVVIRVVDKARPVFSQSMYTAVISKESTKKSTVLV HVLARSSLQAKSKGLIGYRIIDKANLFSIDYVTGEVRLKNLNGLDAAEYVFEVEAREV TLPKMASRAQVKIVVKSKSAVQKPTFDKQKYSVTVPESASIGQRIITINSSTPDPNDI LQYKLSGTNDDQPMFEIDSETGEVSVNRHLDYEKVQKYKMLVIATSSAKQQSSEADLI VMIEDVNDNMPVFIRPEVKAEVSDAAISGQFITIMSATDMDTTSSLDDPNQKLLYKIV DGDETLFNISPSTGEVSLARRIEQEDLTSESEDPKKVVNVSVTDGMFTAYAKLVVGIL RSGKMQPPPKFEQSHYVATALENTIVNKSALLTVAVKGGIPPLRYSLGPAAYSNSSSS KDSWPVAIDKKTGRIHVSRVLNYHNDKLYQIPLVVEDVTRRRAFSTLTLSVIDINDKP PFFVLPFYSTSIPETAKEGDTVLMVSATDEDENDTIEYSLLDGGESQFFSVHPRQGTI TVSKKLEHKAGVTLSLTIKATDSANPPHHATTTVEINVASESVRVPRFSNSHYLFFVP EDADIGDVVGSVQQMETEIDEVRFTIVPGSEVSDSLLPFSVERSTGKIIVKSSLDRER RKQWKMTIRADAAGGVHAITTVTLDILDVNDNAPAFHGDYDKLTISEDATVGTSVTIF SAMDRDDSPSGRIRFSLVNKDPHFEMNGDSGWLTVAAPLDRETQDLYQLIARATDEGG FNTDLSFTISVNDVNDSPPKFEKDEFDVDLLLPSNALILHFDIKDEDLAPNNHSLLFI SEGNEEGVFWIDSENNLLLKRPEIVENKKEYSLKIIAFDGVFEAKTLVKIHLKSKEDV KTRCPDVEKTVILPESSKKGTVVFGESSLLGPNTTFKLIEEGAENAFVMNFRNGIIKV KEVGQIDYEKTQEFELIRLTIQGKDELCKERITVKIENLNDNPPKIKEKSVYVSIEEN LPTSQDSRQYLTRIAAEDADSDDIHFRLLDDFNKTFEIDEFSGVVTVLKPLDSESVSS FNLTAIASDGNFEDKAIIVVTVIDKNDNAPTFEKSTYSMKVMESEAVGYELARLQAFG GDTNETIEYSLKASDHNKFVSLNAQNGVLTLAQPLDFETISTLRLTVIAKDSGIPPLE SVAQVEISVMDENDNAPKFEKEKYTGKVKENSKVGEKVLTVKAVDADSEHFGAVSYEL ELIADKASDDSLPTTSVTPPFSINANGDVLINQPIDYEKTKKYNLKLIAKDGGRPPLV SEALLDIHVGDENDNAPVFDDCNMTAVVQEGESIGHKVLKFSISDLDGPTNGAPFTVE IQGDGAKSFKVNDKLELLTAKKLEHRNKDKYLLTVIAKDTKGKSTDCPLTVFIRQASR HAPTMKPMKIQVNTLQNELPEGVIGRLKAFDEDEEDQNGLLRFGIVEGSTQSPRVQMQ ESRPTHLFRIDPTTGDIWSDHSIPQGLHTFNVTVSDGKFTTVSYVEVQVNSIDNDVID HAVSIRIRSMTVEDFMKNHVKEFRRIISHHLNLNDENSIQLISVQQVPSTDSARNRRS KRGPSEDVEVLMTAQRGHGRGYLKPDHVYSRLKNDFQNMNDQSQRMRYQLITEMCTTG VCLRGECREVIELIDDSWTKVSTEEFSFVSPFHSRFAQCLCPDGFGGKRCEIETNQCS KSPCEQWQMCIPSVFNSTFECVCPLGMEGDRCLVPSCKNDGKCLEEAELSVGGDGYFE ISLSNEIESRMELEIELKTTSPNGIIMWSRGRHDYHMLRLVNGSAQYHWDAGTGTGIV TSKTLIVDGQWHRITISRRQRRTRMTVDDDGLEEAFRFVMCTVSVLINNTIFSPVGST VVNLHRYSQKLVLGAKVENGQLTDGISGCFRTISIDGIKVLKTRQGMKLFGVQPGCSA LTSSPCNDLPCKHGGTCVSHGKSQFVCQCTSRYSGDTCEIDLEPCSSTPCPTGIQCIP FYNDYLCKCPNGFTGKHCEARGFEDHETSSCSKNVCGSSGQCISIPRHSLESSDFICN CTGGVLQSTPCTEKSEILTNVLEFLLKAEIVIVLLGVLFLLLICCLAFVTWKCCKKKG DPKYGAHCDVPHMRNTRVLVPVVPPPLPPRGFRNESSNFIGLSTSSATTSTRPMVEVK PYSSDIRYSRSPSACGSSKGSRRDPLPSDKFRRPEEVGNRIRNSDRRDPRGDVLTSLR TSPDDWLGIDDRIDSALKYSRAAAGALVVGDTELMPVVNDDDYMTMKPRKDQNFEKGP PAVPAHATPLESVLKMSSSSVDEAPRNALYDDPISLNSQSFDDIDEEVNIHIS" assembly_gap 400246..400280 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 406691..407013 /estimated_length=323 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(411768..411821) /gene="CBG25965" /locus_tag="CBG_25965" /standard_name="CBG25965" /product="Protein CBG25965" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKR5" /protein_id="CAS00495.1" /translation="MNRSEKVRIRVWENGNK" CDS join(412291..412398,412446..412671,420568..420760, 420805..421015,421065..421502,421547..421801, 422084..422215,422261..422329) /gene="Cbr-cct-5" /locus_tag="CBG_18052" /standard_name="CBG18052" /product="Protein CBR-CCT-5" /note="C. briggsae CBR-CCT-5 protein; contains similarity to Pfam domain PF00118 TCP-1/cpn60 chaperonin family contains similarity to Interpro domains IPR017998 (Chaperone, tailless complex polypeptide 1), IPR002194 (Chaperonin TCP-1, conserved site), IPR001844 (Chaperonin Cpn60), IPR002423 (Chaperonin Cpn60/TCP-1), IPR012718 (T-complex protein 1, epsilon subunit)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XSX5" /db_xref="InterPro:IPR002194" /db_xref="InterPro:IPR002423" /db_xref="InterPro:IPR017998" /db_xref="InterPro:IPR027409" /db_xref="InterPro:IPR027410" /db_xref="InterPro:IPR027413" /db_xref="UniProtKB/TrEMBL:A8XSX5" /protein_id="CAP35578.1" /translation="MAQASAQLLFDESGQPFIVMREQENQKRITGVEAVKSHILAARA VANTLRTSLGPRGLDKMLVSPDGDVTITNDGATIMEKMDVQHHVAKLMVELSKSQDHE IGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALETLDSISDKFPVEN RERLVETAQTSLGSKIVNRSIRQFAEIAVDAVLSVADIETKDVNFEMIKMEGKVGGRL EDTILVKGIVIDKTMSHPQMPKELKNAKVAILTCPFEPPKPKTKHKLDITSTEDFKAL RDYERETFETMIRQVKESGATLAICQWGFDDEANHLLQANDLPAVRWVGGPEIELLAI ATNARIVPRFSELTSEKLGTAGLVREITFGAAKDRMLSIEQCPNNKAVTVFVRGGNKM IIDEAKRALHDALCVIRNLVRDSRIVYGGGSAELAAAIQVAKEADRIDGIEQYAFRAF ADALESIPMALAENSGLAPIEALSDLKAKQIETGNSFLGIDAVFAGTNDMKEQKVIET LLSKREQISLATQVVRMILKIDDVRVPDDEKMGPY" CDS join(426917..427150,427240..427659,428062..428453, 428587..428878,428928..429035,429103..429216) /gene="Cbr-atf-7" /locus_tag="CBG_18054" /standard_name="CBG18054" /product="Protein CBR-ATF-7" /note="C. briggsae CBR-ATF-7 protein; contains similarity to Pfam domains PF07716 (Basic region leucine zipper) , PF00170 (bZIP transcription factor) contains similarity to Interpro domains IPR011700 (Basic leucine zipper), IPR004827 (Basic-leucine zipper domain), IPR011616 (bZIP transcription factor, bZIP-1)" /note="Predicted" /db_xref="GOA:A8XSX6" /db_xref="InterPro:IPR004827" /db_xref="UniProtKB/TrEMBL:A8XSX6" /protein_id="CAP35579.2" /translation="MSCITAAAPLAASSVPPNMMASTSSPPESAELDVAAAVASAAAA LISPMVMPPTMTNGKDVNKTSQILNDYLHMVVGKRVQLIGDTTTSFGLDTPNPKLMFT PLDLPTTAELMQRCLAVNPFEAKFREANQKISSGSMQPNTSGANQSLEALEANGGVPF GGSNPGSVSDLLLKIPQTTLQQSPGIFSNIQLLTAAGDSEGTTRENLKTADISKLLSV AGDFSAQAPRTADVLNAVLDMHSDRLHTINYLNNKPDFSALLRSPSSSAPNSASVLTN AITIPTTSIAPAPTLLAPPKVVSAYHSPHGASLPPSTQKSPAEGNWDLSGEKQIKKEM PYFGDEAMMLMERNNMSSSGSDQDQSTGPSNTASVASTSTGNPVGRPQNGTPGRGRGR GRSTTADMQPDERRNTILERNKAAAVRYRKRKKEEHDDMMGRVQAMEAEKNQLLTQNQ VLRRELERVTALLTERESRCVCLKGLPMSDDPHGTRAGGSNGMYSGPSSDMLNGLGQI NGMHMKLPKLG" assembly_gap 427808..428020 /estimated_length=213 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 431714..432261 /estimated_length=548 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(440740..440886,440901..441113) /gene="Cbr-ins-17" /locus_tag="CBG_18055" /standard_name="CBG18055" /product="Protein CBR-INS-17" /note="C. briggsae CBR-INS-17 protein; contains similarity to Interpro domain IPR022353 (Insulin, conserved site)" /note="Predicted" /db_xref="GOA:A8XSX7" /db_xref="InterPro:IPR022353" /db_xref="InterPro:IPR036438" /db_xref="UniProtKB/TrEMBL:A8XSX7" /protein_id="CAP35580.1" /translation="MVSTRGVLLLLSLMAAVAAFGLFSRPAPITRDTIRPPRTKQGSL KLFPQRTNIHFNNTLPGGASFLDAFNLICPMRRRRRSVSENYNDGTGSLLGRTMNHCC ENGCEFTDIFAICNPFG" CDS complement(join(441380..441634,441682..442077, 442121..442243)) /gene="Cbr-rps-1" /locus_tag="CBG_18056" /standard_name="CBG18056" /product="Protein CBR-RPS-1" /note="C. briggsae CBR-RPS-1 protein; contains similarity to Pfam domain PF01015 Ribosomal S3Ae family contains similarity to Interpro domains IPR001593 (Ribosomal protein S3Ae), IPR018281 (Ribosomal protein S3Ae, conserved site)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XSX8" /db_xref="InterPro:IPR001593" /db_xref="InterPro:IPR018281" /db_xref="InterPro:IPR027500" /db_xref="UniProtKB/Swiss-Prot:A8XSX8" /protein_id="CAP35581.1" /translation="MAVGKNNNKMGKKGGKKKAVDPFSRKEWYDIKAPNMFNTRQVGK TLINRTQGTKIASEGLKGRVFEVSLGDLNNSEADFRKFKLIAEDVQGKNVLTNFHAMS MTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSANQVKKTSYTKTSKIR KIRSEMISCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKR PKIDLGRLHDLHGDSITVGADGEKVDRPDDYEPPVQQEV" CDS join(443045..443220,443262..443452,443499..443602, 443647..443845,443891..444724,444777..445315, 445366..445443,445487..445556,445603..445685) /gene="Cbr-ifet-1" /locus_tag="CBG_18057" /standard_name="CBG18057" /product="Protein CBR-IFET-1" /note="C. briggsae CBR-IFET-1 protein ;" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XSX9" /db_xref="InterPro:IPR018862" /db_xref="UniProtKB/TrEMBL:A8XSX9" /protein_id="CAP35582.1" /translation="MTSHLDDEAIIPMVSTLLGTGGTLPTPPIRTYSRERMMELRTTK ASMTRPENLSEDYNGEDGKFSPLKWLEHRWEIEGIKNRPMSKKIDSLCAGADENTGLS PQRRAFIGGCKAPNDDKARDGEYERLGGHGKNWRNGSTGGADKFAPRGADFKTSFQKG GQLDRGGARGTEWKKESVRGAKFGSRREDRMNSVSGSEKLPEWADGPTTMDDMIELRG FDEPKKGKAKKNPKEKKEKEVKQPEATECVASRPSSTGVKTAEPFDDPAIAYSSGGGA LPATDQELAALLGCLDIQKTSRKTDSEDMTITQKGDDSAGGTSRLSRFFGKKSKSPEL DAILASAGGGNDENIANPMLAKLFGHSGGDNNASSSGHSDIKGGMRLEDLEKGVETKE QPKGSPLQDPSQQAQLMHHLQKFAKQQAEAAQHMQHHRQATPPNVGPHHQQQMHHPMV HTGMPILADPALLASFAQNPLVLDAYVENQLQEAINAAVRANNGQQLPAQLREQLRMA SMRNKAFLQSQTLTFVTLQQHQQNLQQHHQQQQHHQQQKGRTPAMIPASVQRQLQKGT SNAEQKKEKSSQSPPEGGQEGSDAQTQSDAANHLKKLQMQQNYANMVQAMNSGVGWQR GNGAVNGQQQQLPPNVQMLMHQQQQQAQMHHIKMMVSRAQQQQLLMAKLAHMQQQAQM AGMQERQASSHNHHQQQAMPSELSQVGPIQTPLEKLLAAAGVQGSQFTGSGDRIPTSA RPMSLEDLEKQLTSVPK" CDS join(449151..449391,449439..449543,449716..449806, 449850..450007,450364..450838,451560..451973, 452021..452159,452205..452397,452440..452582, 453878..454036) /gene="Cbr-ndg-4" /locus_tag="CBG_18058" /standard_name="CBG18058" /product="Protein CBR-NDG-4" /note="C. briggsae CBR-NDG-4 protein; contains similarity to Interpro domain IPR006621 (Nose resistant-to-fluoxetine protein, N-terminal)" /note="Predicted" /db_xref="GOA:A8XSY0" /db_xref="InterPro:IPR006621" /db_xref="UniProtKB/TrEMBL:A8XSY0" /protein_id="CAP35583.2" /translation="MRSFLLILALCHLALSCTLCPFRIPPRPRPLDQYKLPKVGGKQF DLEKMPKFCNASKQLPVGAECRAQFEHIFCSADRLTDTFSGCQSIVNKSLSEQEQCSK CAYQKADNSWVMRWFDSLGKPAAGITEGNYYWLGDYELCTVLRDEKSFDGQYCRIEME VPDAGVESGCPQTDPLSIILGVCFPAACSVQDLAKVSGLYLPYNLKVECESQGRWSAI TILLLVLFAVWLVPQAVSTIQPHLNDSVLHCFSISENAKRTFSTRRDSPHLHVVHGLE FLLFFTIVCGMVYTSCFHILVKRKKDSQNKIRNFQKTLHFLSKAFHHYQCILSITIRT KSMDFLLYPHFIQLTCFSGLFQLFWPAYIFCVIFMYTVFPGVSSGPMWIHTDTVNRCE GGWWKNLLFINNWFNVTDTCVDLGYVISLEAQYFLILILFIYLSSKFVMITQVSFSPQ IQSRYFVNVQIVVYLIFGSSIVFSFVRAYRQDLPPAPMLTLEPEPLEKIYAVYDQLML SLFARSSSYCLGFIFGIGCATASEDLRKMGLRYRWHAILAVACIASGIFPFVGAFPYS AWNWSSNFRFMNALYAAFHRPMWSFSLLSFVYLCHHGAFKWINALLEWRAFTPLSKVT WVALVVAEPIILYFFSSLNKPAYATHWSTLYTAISAALLSYMIAIFLDIFVTRPIRYL IYPEQMHRYAQAHTQEQQRAAAV" CDS complement(465704..465769) /gene="CBG25966" /locus_tag="CBG_25966" /standard_name="CBG25966" /product="Protein CBG25966" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKR6" /protein_id="CAS00496.1" /translation="MKIGATNCFVRIRTKSSKRHL" tRNA 467306..467378 /gene="CBG28805" /locus_tag="CBG_28805" /standard_name="CBG28805" /product="RNA transcript CBG28805" /note="C. briggsae predicted tRNA" CDS join(467753..467963,468549..468684,468738..468813, 470284..470493,470847..471104) /gene="Cbr-ceh-43" /locus_tag="CBG_18062" /standard_name="CBG18062" /product="Protein CBR-CEH-43" /note="C. briggsae CBR-CEH-43 protein; contains similarity to Pfam domain PF00046 Homeobox domain contains similarity to Interpro domains IPR020479 (Homeobox, eukaryotic), IPR000047 (Helix-turn-helix motif), IPR017970 (Homeobox, conserved site), IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:A8XSY1" /db_xref="InterPro:IPR000047" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="InterPro:IPR020479" /db_xref="UniProtKB/TrEMBL:A8XSY1" /protein_id="CAP35584.1" /translation="MESSKQFDFNGSEFYTQSAEGTPNGAQPTNLSPYYPFPFPGGAG SVAGTMYGTPQGGYGMYAPGPGSSPEESSQYTETTTTKIVEGCEAKYNQKGKKMRKPR TIYNTAQLQMLQKKFDKTQYLALPDRAALAAELGLSQTQVKIWFQNRRSKQKKSKGGT SDRASDEDDDTEESKPESSPMSDSMMNQVSSERPLGSSSSIKSEMKEDYGTDNSSPPV NHPTPNGPMMPDWTIPSHIPTPSSQHLPPVSTIPSMAPVVAIHGYDIKYEDKHHVVNP YDMPLPAYPSYYFQPAYQQY" tRNA 468072..468144 /gene="CBG28354" /locus_tag="CBG_28354" /standard_name="CBG28354" /product="RNA transcript CBG28354" /note="C. briggsae predicted tRNA" CDS complement(join(473975..474049,474140..474253, 474301..474703,474752..474972,475018..475116, 475160..475201)) /gene="Cbr-nex-3" /locus_tag="CBG_18063" /standard_name="CBG18063" /product="Protein CBR-NEX-3" /note="C. briggsae CBR-NEX-3 protein; contains similarity to Pfam domain PF00191 Annexin contains similarity to Interpro domains IPR018502 (Annexin repeat), IPR018252 (Annexin repeat, conserved site), IPR001464 (Annexin)" /note="Predicted" /db_xref="GOA:A8XSY2" /db_xref="InterPro:IPR001464" /db_xref="InterPro:IPR018252" /db_xref="InterPro:IPR018502" /db_xref="InterPro:IPR037104" /db_xref="UniProtKB/TrEMBL:A8XSY2" /protein_id="CAP35585.1" /translation="MATAKIHFKPYFDEVMAAEHLEKALRNKEKLKILEILISVNNTQ RQMIRTPYKTRYGKDLEEEIKKAFSGDFEDFLAALLRTPTKLDVTELNRAVKGLGTNE KNLIEILTTRTNEEIEATKNTYFMTYGKSLEDAISADTSGDFRRLLIIILQAKREESG FADTFKVGNHAAQILKSFDKKSGVEKFEAFKIFAIANGAHAQKVIEEVERQSGKEFQK LAEKELSGDFKNLILSLIETSRNKPRFLANSIHLATKGMGTRDKDLIRILVSRSENDL VLIEHEFQVLFGKPLTQLIKEECKAEYRDGLTMLVKGNTRP" CDS join(479807..479923,479966..480258,480306..480984, 481031..481126,481174..481284,481332..481657, 481700..481814,481861..482050,482096..482643, 482690..483002,483049..483224) /gene="CBG18064" /locus_tag="CBG_18064" /standard_name="CBG18064" /product="Protein CBG18064" /note="Predicted" /db_xref="GOA:A8XSY3" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/TrEMBL:A8XSY3" /protein_id="CAP35586.2" /translation="MTKCQLSPGRQLIVIGIMDFPFEYVERICDYPSFDHHQVSKQVQ DKSVDPKSREYVISEEEELSGEAARADVVDEKEKALIEEIRRLESKRKPLKVPVSSGC SSSDSENWDSVGDTSDTDVIDGIFPNDDMRMKKFKIMRTCCCTDSERNSNTDQTISTS SSSTSTSSEDDVQVTEEQTTSIVKDKYVSSDETTSSSDDEMDIDDEIEYWEDVLQKME KAEDRRGAKIPDDDSEEDSDDDLDSMFDDTKSQTKTSTNSCEATAMEPTSVQPSTPLS SDSSTTSASSEIILTDSLIISSSDPDMDVNENDLEKFNWQSDDLYESSDTDSEIERGL DQLDQAMLAVESTFSNAAVLGENTQFMNEKLLHFQVTLPEILETKKRYEMMEEQGQKA ITDISKQLWLVQQLGSGCMHSAKLVNRKNPEHLQLQKNLDKERRLLYELAPELSKPSH IARLVDAGFDSDFKYLIYEDLGMDLLTLCEEFGPELNSATVFLITHFSFNAIKELHSF DVIQCDIRPSSFSVLQHPFNVKITDYSRCIKKKPPMKTPDDVKPDSFTPRVFHRKDAE FDQFVDFEAWIYTMVYLFTSTRLPWFQDPENMLEMKEHLFNDPSDFVYDGCSEAVPMA ATLIANNKMSYETFLENMNLFFSVDVMQYPDKCQPRLWSLKELEGIKKNGNLESDEEN EIELIESHWNPADESVSEEDSDADEKSKNGKEETAKRSKMEKKKTSLKEDKTQQMSMT MSEVSNTEQWSEASSTNEKRSKPEKKNSGPQKRSPPKRGVAGQWMMMEPTSTEQMSMP SNMPRCKIQNSDEPISKPEKKKKKENAKTPPPVAVNIKEKKRPLVTREFLYEMQKDIN ETDFSISSESSATSFSSWTSSSWTSDDDGDVKKVYKWSQKSDGQSDVDFFEDLNSEEV ETHNKYEDLRALCYKERIYEKNNSDIEPLSDIDSDEKEALVNEIEKQIDPKKREEAQL KEKTQDEPVSGKSPN" CDS complement(join(483758..483843,483892..484024, 484072..484512,484543..484579,484674..484734, 484782..485097,485148..485278,485320..485554, 485605..485677,485722..485805,485853..486277, 486321..486461)) /gene="Cbr-cku-80" /locus_tag="CBG_18065" /standard_name="CBG18065" /product="Protein CBR-CKU-80" /note="C. briggsae CBR-CKU-80 protein; contains similarity to Pfam domains PF02735 (Ku70/Ku80 beta-barrel domain) , PF03731 (Ku70/Ku80 N-terminal alpha/beta domain) contains similarity to Interpro domains IPR005161 (Ku70/Ku80, N-terminal alpha/beta), IPR023827 (Peptidase S8, subtilisin, Asp-active site), IPR006164 (DNA helicase, ATP-dependent, Ku type)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XSY4" /db_xref="InterPro:IPR005161" /db_xref="InterPro:IPR006164" /db_xref="InterPro:IPR016194" /db_xref="InterPro:IPR024193" /db_xref="InterPro:IPR036465" /db_xref="InterPro:IPR036494" /db_xref="UniProtKB/TrEMBL:A8XSY4" /protein_id="CAP35587.2" /translation="MPPKKSSTGITVMLIDAGVNMNMRSSNNEKTDFENAVHTANSII SRKIFSEDAENFCVMAYNLDSKFITKLGKETFKGVVVHNEEFVPAQFDHLRFLLTELK QNTSDGSFSDPNCNGIIYFAKIKVSLPVFKGVLAAVAILKERLELVSNPSGITLIVLT NGMNENIRQENYDLLVNAITECNADLMIIGIPENPEYPASRISELVDQLGGRTYSFEN VSMQLSTYQARQKSERKYNKMWEIAPGVRLPVTFAVKSEKSTALLKFKNADAEGNEMV RMEQMHVETQNPVTDSVDDETPKFVAKGAAKNLKPVEKIKTKHGYNFGKSVIMMDQDY LKEKYNDHNFNEGQTGGVLKLIQFTKRANILDSYLMEASAKTVLPSLNSPKSGATKAA VALIRAMFDMRVAGICRYTFHATSQVQLVALLPHRDAETGVYYLRSVKLPFSDDMRTL KFPKFTFDEDEEDTNKPTVAQLSAVDDLIDKMQLPESEIVTSLKAWCFIQMLYFSDSM ENHSIRKNEILNDIMAPKRKVEAECPEMFQRLSREFNLQPVQKTKRERVTVEPEDLQA MISEWTDKKVKTEVVEESEEGPSQKKKKKFNTSGAKKISRKEELQSEIEEDGGASRIC SKMLEMISNTCKFHPNGAISGFFQLLVNELSIIRSVFVEKSKCDEFNELLEKLREEED FEPFAEVLAEEKSCNPISSSEVSTSEISSFDAAEFWEE" CDS join(487013..487112,487169..487480,487532..487686) /gene="CBG18066" /locus_tag="CBG_18066" /standard_name="CBG18066" /product="Protein CBG18066" /note="contains similarity to Pfam domain PF09446 VMA21-like domain contains similarity to Interpro domain IPR019013 (Vacuolar ATPase assembly integral membrane protein VMA21-like domain)" /note="Predicted" /db_xref="GOA:A8XSY5" /db_xref="InterPro:IPR019013" /db_xref="UniProtKB/TrEMBL:A8XSY5" /protein_id="CAP35588.1" /translation="MTDTADQDFELVDGAERKSSTSDSFEAVDDKKTDSQSVSEDEVD QTLQDVDKETEEEEEPKLPFVDQSIKDDAERKPEKDGEQLVEEALNAPIRPDQEQFYT AESSNRAITLLIAFSAMMFTVPLLVMATLYYNVFIDHFHLPPAEAMLYSGICAAVVVI LIAAAFCYVAWKEEKDAEDKLKAEKKKE" CDS join(488115..488247,488353..488430,488496..488648, 488681..488832,488876..489487,489533..489797, 489841..489950) /gene="CBG18067" /locus_tag="CBG_18067" /standard_name="CBG18067" /product="Protein CBG18067" /note="contains similarity to Pfam domains PF09446 (VMA21-like domain) , PF01753 (MYND finger) contains similarity to Interpro domains IPR002893 (Zinc finger, MYND-type), IPR019013 (Vacuolar ATPase assembly integral membrane protein VMA21-like domain)" /note="Predicted" /db_xref="GOA:A8XSY6" /db_xref="InterPro:IPR002893" /db_xref="InterPro:IPR007320" /db_xref="InterPro:IPR019013" /db_xref="UniProtKB/TrEMBL:A8XSY6" /protein_id="CAP35589.2" /translation="MATLFPNFRDQEVQSAVKNLLTYSLVILIVPLASMFLLKQYFFE ALLGFAANDALTYSAIIAVILVHVVLDMQADAHGSLKIFISLLNFMPYFVHQSTFYFY SEIKNIDVINLSYSTSNPVHEPVYLGFGAEVKVDDLYRLHSKFLPLGKIGGKPSWLNP KHLPKSTDLLCKVCEKPMCFLMQVCANGGENDPPHAFHRTLFLFVCRNPACSRLNDAS NLKAFRCQLPRTNDFYSFDGPMNPDFGDAPDPRAITDGPGMCQICGCAAAKKCGKCQV ARYCSQAHQVVDWPTHKLECAQAATDGFIAEKLQNPRNAFVFKEFEVGIDQEYMPANL FDGISDDEDDDDDEEGNQEDETEEEKKARMKEFEKFVKENRDKNVDMTKEDLDAATSE QPKDLDFDKFNRLVNLNPEQIVRYKRHGLPLRATGRSELPEVVEPCENCGAPRRFEMQ LMPHLLSLIDVDAIGQSIDWASVYIYTCSASCQITDNGYAQEFIFKQDFV" CDS 490137..490502 /gene="CBG18068" /locus_tag="CBG_18068" /standard_name="CBG18068" /product="Protein CBG18068" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSY7" /protein_id="CAP35590.1" /translation="METSLKNVEEKEGVGQENEDDELASSNLYEESMAEITFNETRAD GTGGHDSDPFDRSGEYDEDVNLEAPPPTTPDIPEVSTDVLISLRNRIIHSEATTDVRN PFEDTDQTKTDEPSVTSNH" CDS complement(join(490614..490779,490826..490968, 491017..491045,491092..491245)) /gene="CBG25967" /locus_tag="CBG_25967" /standard_name="CBG25967" /product="Protein CBG25967" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKR7" /protein_id="CAS00497.1" /translation="MFSVYRGCSKIENDFTETTITTVTYRKLTFVTELSCCKGPECFG RNWEKIWDDNDYASGEFHPRDNIFWYTSISVTATLLSLFIGKSSFLGYQRLKEQLVLE SLKTISRTLKEADDEDKITRRAAIANMFRIRRRKKKADVHCTDASSQKTDSVQALIRS NKK" CDS complement(491629..491721) /gene="CBG25968" /locus_tag="CBG_25968" /standard_name="CBG25968" /product="Protein CBG25968" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKR8" /protein_id="CAS00498.1" /translation="MPTFRFSLKFLFWYFGIFCTSETIKYTDSV" CDS join(491870..491976,492018..492159,492203..492352, 492403..492483,492533..492914,492959..493119, 493679..493845,493895..493992,494039..494120, 494168..494258) /gene="CBG18070" /locus_tag="CBG_18070" /standard_name="CBG18070" /product="Protein CBG18070" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSY8" /protein_id="CAP35591.2" /translation="MESNSNESGSHTSKSEKTAAPEVCKKWAELVFRVYERMIHSSEV SFFISAPQVISCLGFILGVCKHNTDGLVLELQGGNEKHDVDFLVDHTMKFAHKWSGEL RTLLTPGHYHRARRVYAHPKFVHPHTENTFQYHRFFRVEEKIFEGPDEVLSWVARILK TNIPFSHRILNTWAWEQSSIDRMKQQRTVDDISTKVRAKKKKSEEGVLPKKASLLPMI PPNNPSVRSKKAVSEEDKKSPILVWMSHAVVEVPDEFFDGEKVYTWNDKEYLKIHGSP AERIRVRRGNFDFNTLMIPTQNRQLVMLIFYDYDSKLCSLEAMRLFVTNYFDTKGPSI VYKKQETAAANLHSVFVLGGFGDLAIADAVPSATGDPQKISHLQHYGLLSFRNSPRQT APKQVQTGSLLRRKGWKSEIRRKQEEEKARTTLLELNAEQAETISYPICVVLWDKNRQ FPAYMGQVTGKMTDQESEEAKQAEEKKKQKNKWLFC" assembly_gap 493299..493308 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(494447..494770,494819..494959)) /gene="CBG18071" /locus_tag="CBG_18071" /standard_name="CBG18071" /product="Protein CBG18071" /note="contains similarity to Pfam domain PF03650 Uncharacterised protein family (UPF0041) contains similarity to Interpro domain IPR005336 (Uncharacterised protein family UPF0041)" /note="Predicted" /db_xref="GOA:A8XSY9" /db_xref="InterPro:IPR005336" /db_xref="UniProtKB/TrEMBL:A8XSY9" /protein_id="CAP35592.2" /translation="MSRVISKVTTYFKQHSTAEWKHYFLSTHFWGPVANWGLPLAALG DLKKNPDMISGPMTSALLIYSSVFMRFAWHVQPRNLLLFACHLANFSAQGAQVNLFIC FLFLSVLAKTFQLGRFINHNYLHYVEDPVHHKLMVKKEILEHEHEIEIKKAH" CDS complement(join(495593..495847,496688..497282, 497334..498256,498321..498852,498899..498968, 499020..499077)) /gene="CBG18072" /locus_tag="CBG_18072" /standard_name="CBG18072" /product="Protein CBG18072" /note="contains similarity to Pfam domains PF07713 (Protein of unknown function (DUF1604)) , PF01585 (G-patch domain) contains similarity to Interpro domains IPR011666 (Domain of unknown function DUF1604), IPR000467 (D111/G-patch)" /note="Predicted" /db_xref="GOA:A8XSZ0" /db_xref="InterPro:IPR000467" /db_xref="InterPro:IPR011666" /db_xref="InterPro:IPR040058" /db_xref="UniProtKB/TrEMBL:A8XSZ0" /protein_id="CAP35593.1" /translation="MNRKKLSTYGQEFDDDDEEGVTVSKKPTQIHEEVATDEKGKRRF HGAFTGGFSAGYWNTVGSKQGWVPQVFSSSKDARGDQIKQRAEDFMDAEDLGEYGIGN RSIKQTSTFGDGGSQKRKLAWERDAASVSTITQMFEEVVKPVSNSIGVRMLRSMGWRE GRGVGLANVKQKKNRGGMTEEAEFDREQAAKVAPSYELANEDALVKQLRPLSGDHGIG YQGLRQTTVLDESYGRTALALKSGNKNSKGIRGQAFGVGAFEEEDESVYSNYDLSQFD FSLDVAGTSGESDLKTQKVDTAFELQPKRLNPRKFYGPPRVPPNFRGNHKPIPMDISK LPHLIKEDVKQMNAVQRAKFLGEDRLNILQIGVQDSSKPKERRSRWDIKANEVEQREG QRGGEADEERDRRLRNRVEFPNEPMRQARFKEFLHYIRRGLPYPQPTDLTVWEWEWEK KEFESKLTTEERGMLPEVQSRAQPLAKTAIAAPIHEMMASKFVKEAAGDLKVGTKDED KLAAVKMEMFGDRTRQSFEWYPDALLAKRFNVPHPFPGCDMVGVPALQKTNWRQKDTL GDIGFSTSVGLPNTANEIEMRERLLKTKARRAAEEANRRESDDEEYADKKEELGEKEE KEDQKEEKAPKSFFDLIFGDGFEIDDDDSEDEKEQERERQKELERRKEEERKRMEEKE RKEEERRNEVHRELRKLEEKKRLGVKSRKENDDDDIQVIEEISKNVTSYGPTLPPIAA TLSKDSVLHLLEKSIKEKDGSKKKKKKKEEKERKHSKKSKKSKKSKKEKKKKRHSSSS DSSDDSGEWEEK" CDS complement(join(499294..499383,499428..500024)) /gene="Cbr-prdx-3" /locus_tag="CBG_18073" /standard_name="CBG18073" /product="Protein CBR-PRDX-3" /note="C. briggsae CBR-PRDX-3 protein; contains similarity to Pfam domains PF08534 (Redoxin) , PF10417 (C-terminal domain of 1-Cys peroxiredoxin) , PF00578 (AhpC/TSA family) contains similarity to Interpro domains IPR019479 (Peroxiredoxin, C-terminal), IPR013740 (Redoxin), IPR000866 (Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant)" /note="Predicted" /db_xref="GOA:A8XSZ1" /db_xref="InterPro:IPR000866" /db_xref="InterPro:IPR013766" /db_xref="InterPro:IPR019479" /db_xref="InterPro:IPR024706" /db_xref="InterPro:IPR036249" /db_xref="UniProtKB/TrEMBL:A8XSZ1" /protein_id="CAP35594.1" /translation="MLGSAVRALTRAVPSVAVASRQLNTSRALLSLRPLGPKNTVPAF KGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANEFRALGAEVV ACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDTESGLSYRGLFL IDPSGTVRHTTCNDLPVGRSVDETLRVLKAFQFSDKHGEVCPADWKEDSPTIKPGVSS SKEYFNKVNK" CDS complement(join(500406..500513,500561..500806, 500921..500995)) /gene="Cbr-rnp-4" /locus_tag="CBG_18074" /standard_name="CBG18074" /product="Protein CBR-RNP-4" /note="C. briggsae CBR-RNP-4 protein; contains similarity to Pfam domains PF08777 (RNA binding motif) , PF00076 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)) contains similarity to Interpro domains IPR008111 (RNA-binding motif protein 8), IPR014886 (RNA-binding motif), IPR000504 (RNA recognition motif domain)" /note="Predicted" /db_xref="GOA:A8XSZ2" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR008111" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR033744" /db_xref="InterPro:IPR035979" /db_xref="UniProtKB/TrEMBL:A8XSZ2" /protein_id="CAP35595.1" /translation="MGDNDVEMEDVVVNAEKSKGRGLAQTRNREKITYDVVDEESTAA SGGPQRSVEGWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVE YETQKEASEAIEKSNDTDLLGQNVKVDWCFIKGKKTSGRR" CDS complement(join(501236..501371,501421..501603, 501657..502247,502352..502383)) /gene="Cbr-snfc-5" /locus_tag="CBG_18075" /standard_name="CBG18075" /product="Protein CBR-SNFC-5" /note="C. briggsae CBR-SNFC-5 protein; contains similarity to Pfam domain PF04855 SNF5 / SMARCB1 / INI1 contains similarity to Interpro domain IPR006939 (SNF5/SMARCB1/INI1)" /note="Predicted" /db_xref="GOA:A8XSZ3" /db_xref="InterPro:IPR006939" /db_xref="UniProtKB/TrEMBL:A8XSZ3" /protein_id="CAP35596.2" /translation="MSNAFLHTNIMLLRAQEVDELLDGSEEKYRAAGAVPSTPRVEGG VSRTAAKTPAAGWAGQQVTSGSHHLESVPCSCPIAHSRGRMKHRELVYSAEDLEMSKR VMENAEEGEDLVPIRLDMELDGIKLRDTFCFNRNEKLITPEMVAEIMCEDLDLPLAVF QPAITAAINQQLEASTEAPPLDPNICDQRAVLKLNINVGNQSLVDQFEWDMSDPNNSP EEFSRNICKELGLGGEFMSGIAYSIRGQLQWNQRTYAFSESPLATVDCPFRTATEVES WGPFLETLTDAEIEKKMRDQDRNTRRMRRLVGGGFNY" CDS join(503004..503089,503130..503276,503332..503593, 504063..504161) /gene="CBG18076" /locus_tag="CBG_18076" /standard_name="CBG18076" /product="Protein CBG18076" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSZ4" /protein_id="CAP35597.1" /translation="MRFTIICNILLSLFCYKLFGNWELPIRLCFDPFRIVGGFPTLID SFFDNYLEKTAENTKNSFPLEELQYPVLSSQLERTLSWTCPILESSNQCFTVVTSSEC LGTSQLSYIFWINHGESEECFHGEKGNVECIIPHQSGNICQNVVVGIRRSGNNSIFFD IEDVSVSHSKCHILWFHYNLHLPYTRFHIFGRRHVIN" CDS complement(join(504598..504687,504735..504819, 504865..504971,505021..505137,505187..505348)) /gene="CBG18077" /locus_tag="CBG_18077" /standard_name="CBG18077" /product="Protein CBG18077" /note="contains similarity to Pfam domain PF03227 Gamma interferon inducible lysosomal thiol reductase (GILT) contains similarity to Interpro domain IPR004911 (Gamma interferon inducible lysosomal thiol reductase GILT)" /note="Predicted" /db_xref="InterPro:IPR004911" /db_xref="UniProtKB/TrEMBL:A8XSZ5" /protein_id="CAP35598.2" /translation="MLVLLIAFLFPLATQAQQVNVTIFTESQCPYCTKLLREQIWPFY VNRPGIMNLQIVPFGKGDCTYDYNRNFHCTCMHGATECDLNRLQNCAISYFPRRHLGL VTCLQGLTTLREGFSKCLSRLSPNTQRKLIECATTQTGELLNYYSMVNTHRAGVRIWP TMYVNGVFFDRSYPVEHKLCEHTAWC" CDS complement(join(510867..510896,510946..511507, 511557..511645)) /gene="CBG18078" /locus_tag="CBG_18078" /standard_name="CBG18078" /product="Protein CBG18078" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XSZ6" /protein_id="CAP35599.1" /translation="MSPLDYLHLTLLIIGPIALLVGCGGKKKAPPPKSASKMAPPPPA PVAPAAPDAADAAPDAAAAPAADGEKKDGEKKSEKKDVEEKKDEKKEGDEKKDGEKKE EEKKDGDKKSEKKEGDKKSEKKDEKKEDDKKEGDDKKDGEKKDEEKKSDKKDDKKNEK KEKSKKSKKSNKSKKSKREKKDGDKKDDEKKDDDKKEDDKKDEKKDDEKKDDEKKDDD KKDDEKKE" CDS complement(join(512422..512811,512859..513266, 513315..513737)) /gene="CBG18079" /locus_tag="CBG_18079" /standard_name="CBG18079" /product="Protein CBG18079" /note="contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain)" /note="Predicted" /db_xref="GOA:A8XSZ7" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="UniProtKB/TrEMBL:A8XSZ7" /protein_id="CAP35600.1" /translation="MQSSDEGEDPLPKDEEELKTKKDRYKVLKLLGRGGYGAVYSVLR LSDSEKFAIKCENASAVRKSLYMDCNVLKGAAQIRSRHFCTVIDQAAVKDRFNFIVMK LIGKNLWDLRMDTPECRFSLGTALKAAAQCLISIEQLHRFGYLHRDIKPGNFAAGRVE SNEHHTIFMLDFGLCREFVKREEGKIRTQRKSAPFRGTTRYAPLNSMLELDTGRKDDI ESWLYMVVEWTSGGLPWRKLKASDRDKVLRFKKELRSKDEIIEDMYYNCPRKEFHRIL KYTDSLDFYSQPDYQFVYFCIQHAATANKIKDADPIDWDPDVPYIGPIEVPGDGKVID LEVEMRMSAEGSNNKTKKEKDSMKRQKKKEEKEDAKNRTKKREAKKSEKEKKEKTKKE SSGANASKKSENKT" CDS complement(join(514163..514399,514447..514668, 514776..514869,514915..515025,515074..515176, 515219..515346,515402..515529,515574..515588)) /gene="CBG25969" /locus_tag="CBG_25969" /standard_name="CBG25969" /product="Protein CBG25969" /note="contains similarity to Pfam domain PF01633 Choline/ethanolamine kinase contains similarity to Interpro domain IPR002573 (Choline/ethanolamine kinase)" /note="Predicted" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/TrEMBL:B6IKR9" /protein_id="CAS00499.1" /translation="MNAIENIFTNNPLDSDEILQKVIELGIEYLGEKWKNVDKNQITV TKIMGGQSNHMFHVSSSTSATPYFLRIHKQGQSQFFTDVVNFAIFSERGLGPKRYGFF DGGRMEEFLPSRTLKPENVLNPEISRKIGAAFPLYHSIKIPVSKSRRCFQIMRESLKG YIDLGGRKYAVFPVTYSDHPMTISPDDLLKEINCSNILQLNSNNEIMFIDWEFASYNC RGYDLAMHLSESAIIRTASPCGIQINEIFTDNPPNLRPFCEVYVDSENLLKNRTSAYR DLEIENLIKECQFYWPITHLFWACLIMKLGRMECNKDIDMDIMARDRLAVYYPLKLRA QEIYEKLKFAK" CDS complement(join(516409..516639,516691..516915, 516963..517128,517175..517285,517331..517433, 517479..517606,517653..517780,517826..517840)) /gene="CBG18080" /locus_tag="CBG_18080" /standard_name="CBG18080" /product="Protein CBG18080" /note="contains similarity to Pfam domains PF01636 (Phosphotransferase enzyme family) , PF01633 (Choline/ethanolamine kinase) contains similarity to Interpro domains IPR002573 (Choline/ethanolamine kinase), IPR002575 (Aminoglycoside phosphotransferase)" /note="Predicted" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/TrEMBL:A8XSZ8" /protein_id="CAP35601.2" /translation="MTEIEKFFIEHSPDSEAVLQKVIELGRYFLGGEWKDTDKSEVKV TRILGGQSNHMFHVTSSTSATPYLLRIHRQQPSQVFINTVNFAIFSERGLGPKLYGFF EGGRMEEYLPSRTLNFDDVLNPEISQKIGTVFPPYHAIKVPVSQNRRCIQLMRDWLDG YKSLGGGDYEILPTTVTYSDHPKCVSVDDLTNEINIFEKWSTELYENTLVFSHNDLAS GNILELNSTKELVLIDWEFGTYNWRGFDLAMHLSETAIDFRVPFPPGIKIIENLTENP PNIRVFCEAYLDADNKNHIPSDRSSELESLIQECLFFWPLTHLFWALSAMKHALLKFE NGVDLDVQARDRLAVYFHLKPRSQKIYEELSKKG" CDS complement(join(518438..518683,518728..518952, 518994..519159,519206..519316,519365..519467, 519508..519635,519677..519804,520076..520249, 520291..520512,520562..520727,520774..520884, 520930..521032,521335..521462,521509..521636, 522369..522518,522564..522788,522833..522895)) /gene="CBG18081" /locus_tag="CBG_18081" /standard_name="CBG18081" /product="Protein CBG18081" /note="contains similarity to Pfam domains PF02958 (Ecdysteroid kinase) , PF01636 (Phosphotransferase enzyme family) (2), PF01633 (Choline/ethanolamine kinase) (2)contains similarity to Interpro domains IPR002573 (Choline/ethanolamine kinase), IPR004119 (Protein of unknown function DUF227), IPR002575 (Aminoglycoside phosphotransferase)" /note="Predicted" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/TrEMBL:A8XSZ9" /protein_id="CAP35602.2" /translation="MENWANELFEDTVVFCHNDLACANILELNSKRELVFIDWEFASY NCRGFDIAMHLSETAVDFRDPTPPGIKFSEELTDNPPNLHGFVEAYINADNELKNRIP SDRSGEISKLIQEVEFFWPITHLFWACFVMKLALVKYNCGVDMDKFFTENDPSSEVIL QKVINLGVDFLGREWKNTDKSQVNVKKILGGQSNHIFYITSSNSAKEYLLRIHRQEDA HVFTDTILFSIFSERGIGPKLYGFFNGGRLEEYLPSRTLDAVSVLKPEISRKIGESFP KYHSMNVPLSKNRRCFQVMRDVLQQYQNLGGGDFNLFPTHVTWTDHPDSISLENLQKE INLMESWTNEIFEDTVVFCHNDLACANILELNSNKELVFIDWEFASYNCRGFDLEMFL SETSIARGLTSTKAQINQEMTEHSPNLYGICEAYVDADYKLKNLEPSNRSAEISKLMK ECNFFTPITHLFWACFLMKIGLINYIPGADINMRARDRLARLFKQNAINSDVIKKKLI ELGESFLGGEWKNVTLDQVHVPRLLSGQSNYLYHVTSSTSATPYLLRIHRQERSQVFT DTVLFAILSERGLGPKLYGFFEGGRLEEYLPSEGFTEDDYWKPGFVQRIGAALPACHA MDIPVSKNVRCAKLMRDWLNGYKELEGGDYEILPTTVTYSDHPKTISVQKLSEEIDTF EKWAREVFEHTLVFGQIDFGVSNVLELNSTKEMVFIDCEFSSYNWRGFDLAMFVSESA ITFNVPFPPGIKIIEDLTDNSPIIRILCEAYLDADNTLKNHIPSDRSSELESLIQECL FFWPLTHLFWALSAMKHALLKFENGVDLDVQARDRLAVYFHLKPRSQKIYEELKKWKK AL" CDS join(523304..523306,523354..523608,523658..523805, 523851..523985,524030..524393,524444..524546, 524593..524760,524805..524884,524931..525049, 525097..525245,525291..525431,525478..525618, 525669..525767,525811..525915,525957..526085) /gene="CBG18082" /locus_tag="CBG_18082" /standard_name="CBG18082" /product="Protein CBG18082" /note="contains similarity to Pfam domain PF00209 Sodium:neurotransmitter symporter family contains similarity to Interpro domain IPR000175 (Sodium:neurotransmitter symporter)" /note="Predicted" /db_xref="GOA:A8XT00" /db_xref="InterPro:IPR000175" /db_xref="InterPro:IPR037272" /db_xref="UniProtKB/TrEMBL:A8XT00" /protein_id="CAP35603.2" /translation="MIRKRLINSNSEAKTEDEKKSENQANLVQEEIEQNIVYGYDRKR KRKRKADSTESSSEHPEGLEKFDNDEDVAISPTGNPIVDPTKIETEELEQEIGSRNVS RPSTYRQLSLLLTCVTLLKNNLVFIECFFNHGGIYFLIPYFVILFTLGVPMAIFELSL AQFSSIPMNGMYTRMAPILGGIPYLTLTLRCVYTVYIAFDPRFLLYAYKCMTTVITGN DDWIHCGDYQGVRCFDPTISCKINEWRLNGKCIANVQLDKLEKYSKRVIRKLTANSRQ HDYGLLTYFGFRELRLISQIPSQFYKEIISLDMMDNIVAALAFLLVAGLITYKGHRFF ASVSGFFVFLPILGMLPVVILFYYDVGSAKKNFFKEMIKNNNISKIMEKSAWLNAARV SVKTVYIADGTLMALGSMADFRHNFVKDAFLLAASGAAYRLLLCFGLLPIYYVGNDLL YPFAKNVYAKGELVQFHAIEIFFSALPSYSIPGVSYTVLFFAYALLFGTINFAFVAYQ VITFEILINFLHHLFPRLLYLKQKAVKICVIMATVTFLLALYISGLPYKKGIVGYRTE LELDDYVVGLVSTSVFIQLVSVSIVYGHKRLIVNVLTMLKSHPKTYRFVERNRVVLYL MWTVLLPISCLLSIMSIIVKKYQYYHWPVVLYAAISAFPLIYMIRQIVIYRIRNQDFS ALSQTHRWQPANEGHAREIDHDERASGVLS" CDS complement(join(526786..526900,526944..527046, 527089..527216,527265..527392,527438..527452)) /gene="CBG25970" /locus_tag="CBG_25970" /standard_name="CBG25970" /product="Protein CBG25970" /note="contains similarity to Pfam domain PF01633 Choline/ethanolamine kinase contains similarity to Interpro domain IPR002573 (Choline/ethanolamine kinase)" /note="Predicted" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/TrEMBL:B6IKS0" /protein_id="CAS00500.1" /translation="MRPVKKLFSENELDSDVVLEKVIQLGADFIGGEWKSVDKNQVKV TKILGGQSNHMFHVTSSTDAKEYLLRLHRLGGNHVFTDTVNFAIFSERELGPKLYGFF DGGRMEEYLPSVTLDSDRILEQEISRKVGATFPRYHAIDMPISKTRRCFQVMRESLKD YR" CDS complement(join(528276..528422,528473..528631, 528688..529029,529080..529322,530313..530423, 530473..531113,532776..533040,533881..534285, 534306..534320)) /gene="Cbr-mnp-1" /locus_tag="CBG_18084" /standard_name="CBG18084" /product="Protein CBR-MNP-1" /note="C. briggsae CBR-MNP-1 protein; contains similarity to Pfam domain PF01433 Peptidase family M1 contains similarity to Interpro domains IPR014782 (Peptidase M1, membrane alanine aminopeptidase, N-terminal), IPR001930 (Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase)" /note="Predicted" /db_xref="GOA:A8XT01" /db_xref="InterPro:IPR034016" /db_xref="InterPro:IPR042097" /db_xref="UniProtKB/TrEMBL:A8XT01" /protein_id="CAP35604.2" /translation="MIPPPKGSCLLIALIAVFVGIILCAGLLTWVFVLRENGDGPDVD WQNATKVPTTTTSQATVSTMTTKLKSTTTTTSAEIPKTDATTTMPTSIPEAITKAVTM ATSTSTTTEEATTTTTAQEVVMPVDVASILKEKSREFEVVEKCAQIQVLPVSCSPSQS PLTSEPSQFQPIHYTLNITIRDIRKPVLEGHMQLFASSKDQVQAIALHASKIHNMENR DRVHVVNCNTGETICVSRVHQIDNIVYLELAQSISSGVDLRIDINGFISADSGPHVYK QIPTAKWRVPQMIGSIFEPSSARHVFPSLDLHNQKATFNLCLNHGPSMVAVSNSLINQ NVSTSGITCFEKTVPLTAQQLSFVAFEKTNPLFYNTTTLNGAYLPEINMIFNLNAKNF QQYEWIHSEVSKVMSLMSKWSGFSYPLPRLEVVVAPVMTGHSALGVITLPAQAIAYQK HTSTHETLIKEVIGQWMEGVVTTEHTCFEKAVIAYLEWKINEELQIVKKTRKMEVSRI RPRNLNETADQLRVIRQVKAQSSNLCSPRFVEVFYTLDETYGQDTVVGMIRVIFDKFA FSTATISDWASAAETAAGGRPEAGAIILEWYRPSSKISRPVLRATVSSNSVEFNQLTE NNWTVPLEISGSAGTQLAVISEKKQTVPFVSTDYVVVDANRKSHAFVVYDADTYLRLI RCFGDSRCPSGEIGGIFSDLGAALLANILKKPENQDVAKWKSVFKFMAQQNLVEGTAA CCVEHAIREMRKCSYWDIQDVCTKIDFNTVLAAVA" tRNA complement(join(529853..529899,529933..529971)) /gene="CBG28888" /locus_tag="CBG_28888" /standard_name="CBG28888" /product="RNA transcript CBG28888" /note="C. briggsae predicted tRNA" CDS complement(join(535087..535242,536811..537702, 537750..537902,537945..538094,538143..538178, 538235..538350,538397..538651)) /gene="CBG18085" /locus_tag="CBG_18085" /standard_name="CBG18085" /product="Protein CBG18085" /note="contains similarity to Pfam domain PF00939 Sodium:sulfate symporter transmembrane region contains similarity to Interpro domain IPR001898 (Sodium/sulphate symporter)" /note="Predicted" /db_xref="GOA:A8XT02" /db_xref="InterPro:IPR001898" /db_xref="InterPro:IPR031312" /db_xref="UniProtKB/TrEMBL:A8XT02" /protein_id="CAP35605.2" /translation="MSRRYGWFDEIRTFFPTIWLILAPLILSPLLFLGQEGKCTFVIL TMSCYWVAEVVPLAVTSFIPMIALPFLGIVGIKQVAPKYFADTNIVFFNSLMLSLAVE ECQLHKRIALKMLTYVGTRPHWLMAGFMIITSFISLWISDTACCALMAPIAYALLEEI MIPKMRKVKKIEEIENTKVLENGEIEERKLDTSKLSARDRGICKCMMLLVAHASLIGG TGTINSTGPNLIFRDNIEKNFPNEDHGISYLSWMAFAIPPMIFYMFSSWFIVQLQFLG PRHMISMFKKPTESEKEEEDFARKAVLKSYNQLGPMTWAEKSTLVIFLLAVLSWISSD PKVIPGWSDLFKKGYVTDSCSGLVAVFLLFIWPKNKPDFRMFRKDKNRPSVRQEPLID WDCVRRRFPWSIILLLGAGFAISEAVKVSTVNFSSLADIFKVSGLSTLIAYNLNSTIS SLPLFGMQVILSIVVVVMTEFSTNSATASIFIPISFTLAESVCAHPLYFSIPTAIGPS FSFMLPMATPANAIVYETKTIRMIDMVSCGVLLNIFCIVITVINMNTWAYWLFNMGTY PDYAIRHATNLTGNSTQCF" CDS complement(join(539114..539646,539693..539911, 539956..540345,540391..540543,540588..540692, 540728..541025,541072..541230)) /gene="Cbr-hse-5" /locus_tag="CBG_18086" /standard_name="CBG18086" /product="Protein CBR-HSE-5" /note="C. briggsae CBR-HSE-5 protein; contains similarity to Pfam domain PF06662 D-glucuronyl C5-epimerase C-terminus contains similarity to Interpro domain IPR010598 (D-glucuronyl C5-epimerase)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XT03" /db_xref="InterPro:IPR010598" /db_xref="InterPro:IPR039721" /db_xref="UniProtKB/TrEMBL:A8XT03" /protein_id="CAP35606.2" /translation="MKCWRWRSNRHRIYLFFACASLLLLSKHYLTVTVPIDEEDEELN PVDLKEKEKEKIECEPTGAVETKCTADNGKPLRCWKDEEEVYFPFSYIKKRFDMTGKL GKDGSTFELFTSYAKMRTPDKNYYPLGPFGHFSTYSVETRDRVRCISAKTGISDVPMS TQWDPIPYYYPIQIAQYGLQHYSRIKLDSVSNKSDDNAEVLVGVQSKEWKGAAGMHET TERLFFNDEEKGKVVNISAGHALSNAGAYVYLDKSPDLHVISFDWKPYDANSSFTVLA KMKQDDLLVLINYVFSEGDGKCVWQDEEKSFDDETIVLKPRKDGQVSYSYSYSGSAPI GEWSTVTRDILVDVARALSSGENRKKDDNVVLHPGDLRLVSLGFRGQLTVRQQIAQRK EQDSHAFRSSADWLVENQDKKGGWAVPVERSIADRKLVLPPGWHSAMAQGHGISVLTR AYNQFNDKKYLSSAINALELFKTNSSEGGVRAEFFGYIWYEEYPTTPGSFVLNGFLYS LIGLYDLSKLDVSGIYDDSAKTKVKEAQEMYSVGIRSLKQLLPLYDTGSGTIYDLRHV ALGTAPNLARWDYHAVHVYLLKWIAGLEKDEFLNKTADRWIGYAYGKRAKHN" CDS complement(join(541465..541549,541609..541695, 541742..542087,542135..542293,542453..542630, 542683..542823)) /gene="CBG18087" /locus_tag="CBG_18087" /standard_name="CBG18087" /product="Protein CBG18087" /note="contains similarity to Pfam domain PF04072 Leucine carboxyl methyltransferase contains similarity to Interpro domains IPR021121 (Leucine carboxyl methyltransferase, eukaryotic), IPR016651 (Leucine carboxyl methyltransferase, LCTM1 1), IPR007213 (Leucine carboxyl methyltransferase)" /note="Predicted" /db_xref="GOA:Q60YU0" /db_xref="InterPro:IPR007213" /db_xref="InterPro:IPR016651" /db_xref="InterPro:IPR029063" /db_xref="UniProtKB/Swiss-Prot:Q60YU0" /protein_id="CAP35607.1" /translation="MDSEAISSDSHVAAAIATRRRSNSVSDDYSVQRTNDDATQCKYF AIQKGYWKDDFIGRFANSSANVAEARRFPEISMGYWARTAAIEKYVRGFLEEFDGNAQ VVSFGCGFDTLFWRLVSSDAKLAKYVEVDFSSVTSKKIRHILKPGGSVDLKKSFESEA VVSHHADLHAGNYHLIGADLRQTSELEQKLATCQLDHDIPTIFIAECVLVYMSSNTSS SLLKNLVSQFRHPAFVNYEQFRTSDAFTRVMEQNLGERGIQLHGLEMCESAEKQEERF RNAGFKSVKVMDMNQIFNQFLDQDEVARIRQIEMLDEMELLEQLLAHYCVVFARV" CDS join(543245..543290,543410..543729,543817..543921, 543968..544018) /gene="CBG18088" /locus_tag="CBG_18088" /standard_name="CBG18088" /product="Protein CBG18088" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XT05" /protein_id="CAP35608.1" /translation="MSGDNYRGGHWQQRGENHWRPYGGRGRGGGGGWRGNDNRGEYRG GYQQSNDGGWGGNQNYGYRSGISGGGEGGGGYQGYRGNNRGNYRHQNNDGYRGGRGRG QGFQRNDRGGRGRRGGNVNHGPVDSSKCLMPAMMSNPWRKLEEAYEEEYGVKITEKME SSPPAVVTSDISN" CDS complement(join(545336..545538,545591..545705, 545752..545902,545949..546061,546109..546346, 546384..546469,546519..546808,546858..547003, 547056..547306,547355..547462,547554..547698, 547788..547870)) /gene="Cbr-cdtl-7" /locus_tag="CBG_18089" /standard_name="CBG18089" /product="Protein CBR-CDTL-7" /note="C. briggsae CBR-CDTL-7 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8XT06" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="UniProtKB/TrEMBL:A8XT06" /protein_id="CAP35609.1" /translation="MHGWKKNKEEEEEDDRSRKRTRDSSWNGSYRMDTSLIGEIKKKH GSNITSSGRKKKSGRSSRKHRSPSSSSSSSGDMAIPASNGMNVTAMPPPPTFQPPFQN MFAQPPPPPLPRGPPPPPGNHFMTPPPMPPPTFTMPPPPPPKDFHFSATTSVTHVALS SIPPPPPPQMVEFPSSSRKDHLPMPPDSKRITSRPVIITKRGVVFKTPSDSDSWYKTN LTHYEMLDQIGEGTYGQVYKAINRLTGEQVAMKRVRLENEKEGFPITAIREIKILRQL HHKNIVRLMDIVIDDITLNELKQTRANFYLVFEYVDHDLIGLLESKELVDFSKEQICS LFKQLLEGLAYIHATGFLHRDIKCSNILVNNKYAFQGELKIADLGLARLWQKESRLYT NNVITLWYRPPELLLGDERYGTAVDVWSAGCMLGELFTRKPLFNGSDPFGQLDLISKV CGSPSPESWPELTELTFWNTFKQRRSYPRKIREEYEHLMPRDAVDLLDKMLTLNPERR ISAKDALLHPWIRNLEHACVQPLKLPQHQDCHEMWSKKQKRLARLGKQPERSSSGSHG SVRASSHPRVPPPPPPAPPAASNPTSSRSNGAVHHQQHHATSMPPVSGIRPLIPPAPP TGHNHHPVHQPFQPVFFK" CDS complement(join(549107..549195,549627..549936)) /gene="CBG25971" /locus_tag="CBG_25971" /standard_name="CBG25971" /product="Protein CBG25971" /note="Predicted" /db_xref="GOA:B6IKS1" /db_xref="UniProtKB/TrEMBL:B6IKS1" /protein_id="CAS00501.1" /translation="MDLLNVIVDIGPMTLFNISLTRIVPIISLASVSERIRVPIIIAK EVVVEEIEAETIRVIGRRAKSENAVIKGAVVGAVIVHQNEVALRRRGVRGIHPDLLLQ ISSNSILMCLTLLAISYYYDISSLFPEQSH" CDS complement(550199..550399) /gene="CBG25972" /locus_tag="CBG_25972" /standard_name="CBG25972" /product="Protein CBG25972" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKS2" /protein_id="CAS00502.1" /translation="MEISPGSSSHERDRKGHRDHRERTRSHSGSPSRSYGNQKRGGSR QGNRGRDRESRDSLTPPYKTQR" CDS join(556330..556455,556505..556570,556616..556883, 557785..557928,557976..558475,558533..558859, 558912..559019,559039..559143,559209..559358, 560580..560702,560750..560794) /gene="Cbr-gly-6" /locus_tag="CBG_18092" /standard_name="CBG18092" /product="Protein CBR-GLY-6" /note="C. briggsae CBR-GLY-6 protein; contains similarity to Pfam domains PF00652 (Ricin-type beta-trefoil lectin domain) , PF00535 (Glycosyl transferase family 2) contains similarity to Interpro domains IPR000772 (Ricin B lectin), IPR001173 (Glycosyl transferase, family 2)" /note="Predicted" /db_xref="GOA:A8XT07" /db_xref="InterPro:IPR000772" /db_xref="InterPro:IPR001173" /db_xref="InterPro:IPR029044" /db_xref="InterPro:IPR035992" /db_xref="UniProtKB/TrEMBL:A8XT07" /protein_id="CAP35610.2" /translation="MIASLIRSRKRSKRIVAYAVFLFGFLAIWCSFSLALVFLSDFYF GEKPIQSQKSSKQIGRSNFHVVVGHYNGNLPEEKKRNLTSDELNANLYSPHDDWGEGG TGVSHLTPEQQKRADSTFAVNQFNLLVSDGISVRRSLPEIRKPSCRNITYPEDLPTTS VIIVYHNEAYSTLLRTVWSVIDRSPKHLLKEIILVDDFSDREFLRYPKLDESIKPIPT DIKIIRSKERVGLIRARMMGAQEAQGDVLTFLDSHCECTKGWLEPLLTRIKLNRKAVP CPVIDIINDNTFQYQKGIEMFRGGFNWNLQFRWYGMPSSMAKQHLLDPTGPIESPTMA GGLFSIDRNYFEELGEYDPGMDIWGGENLEMSFRIWQCGGRVEILPCSHVGHVFRKSS PHDFPGKSSGKVLNANLLRVAEVWMDEWKYYFYKIAPQAYRMRPSIDVSERVELRKTL NCKSFKWYLQNVFKDHFLPTPLDKFGRMTSSSNSSACLAWALRSSGIKTPATTDCLEI FHKTQISNSKYCAAYRPGDTGPKNHRLLGAPCTMGLDLWQLWLYTGDHRLRTDEHLCL TVVQLLHTSSDWKIQLKECAGFDTEYWDFKPNIGRFKNRKTGLCLASPDIFDPSKDEF NPPILDKCRNSDEKQKWTITEMPWLPEHI" assembly_gap 561793..569424 /estimated_length=7632 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(573439..573619,573670..573937, 573986..574170,574219..574310,574353..574535, 574679..574750)) /gene="Cbr-tag-131" /locus_tag="CBG_18095" /standard_name="CBG18095" /product="Protein CBR-TAG-131" /note="C. briggsae CBR-TAG-131 protein; contains similarity to Pfam domain PF00173 Cytochrome b5-like Heme/Steroid binding domain contains similarity to Interpro domain IPR001199 (Cytochrome b5)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:Q60YT6" /db_xref="InterPro:IPR001199" /db_xref="InterPro:IPR036400" /db_xref="UniProtKB/Swiss-Prot:Q60YT6" /protein_id="CAP35611.1" /translation="MEKNRRKKDDAGVMTKTLAGVAALTFLVSFICSSYDITFSHVIS TIDVILEESEYYRSTKEWMASSIDATWHEVSIPSRKAEHLQAINPEVDVAAGGKHVFT PEQLHFFDGSRDSKPCYLAILGRVYDVDGKKEYYGPGKSYHHFAGRDATRAFTTGDFT ENGLVASTHGLSHDELLSIRDWVSFYDKEYPLVGVVADLYYDSDGQPTAELTDVLARV EKANEYRKAQAVEIEVFPPCNSEYNQNGGRVWCSTKSGGVERQWAGVPRKLIEQTTKK FRCACVKNFGPGVSGAEEVKTSSNRGDLDHPDLELFPDCSPTSNSCKIVS" CDS complement(join(575537..575950,576018..576293, 576344..576499,576853..576939,576991..577161)) /gene="Cbr-dcn-1" /locus_tag="CBG_18096" /standard_name="CBG18096" /product="Protein CBR-DCN-1" /note="C. briggsae CBR-DCN-1 protein; contains similarity to Pfam domain PF03556 Cullin binding contains similarity to Interpro domains IPR005176 (Domain of unknown function DUF298), IPR014764 (Defective-in-cullin neddylation protein)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:Q60YT5" /db_xref="InterPro:IPR005176" /db_xref="InterPro:IPR009060" /db_xref="InterPro:IPR014764" /db_xref="UniProtKB/Swiss-Prot:Q60YT5" /protein_id="CAP35612.3" /translation="MNRLKADQKTKVGKRKQDPPETLSEAEYDVKKCRAQNNANLVGV SNMTSSQTVMPITHLSYASSSSQGLAQSSILSKNCPKNYENILRQFVQWTQATEPVSL NFLAKANWNIEYAMTLYYDNPNLFSSSAPATVDQSKTIQLFTQYVDKRDGLGERIGPH GMQRLLIDLGYEPIDRRVLILAWVFKAETQCEFSLQEFTNGMASLQVDSIQGLKQKID ALDAGMKADLTKTRDLCIFTFNYGKSAASRSLDLEMAICYWDVIFGARKPLMSQWIDF LYGQERMAYARLEEELGPTNAKKVKSVWITRDTWNLFWDFIVLGKEDLSDYDEEGAWP VLIDQFVDHCRENLNYPKPLRENSNAMEHQSYY" CDS join(578416..578499,578545..578757,578804..578896, 578942..579307,579355..579621,579670..579886, 579934..580079,580123..580466,580519..580795, 580844..580960,581009..581318,581366..581481, 581533..581927,581974..582159,582209..582541, 582590..582740,582792..583196,583242..583808, 583866..584288,584338..584400) /gene="Cbr-evl-14" /locus_tag="CBG_18097" /standard_name="CBG18097" /product="Protein CBR-EVL-14" /note="C. briggsae CBR-EVL-14 protein ;" /note="Predicted" /db_xref="GOA:A8XT10" /db_xref="InterPro:IPR011989" /db_xref="InterPro:IPR016024" /db_xref="InterPro:IPR039776" /db_xref="UniProtKB/TrEMBL:A8XT10" /protein_id="CAP35613.1" /translation="MDEDVYYPQGCLPIENTLNVSQQIERLRKLSICLLDCKTGVDAD TEPPKRFTKLFKHLSQHCFLNNSNSDFRLYLSLCLGHILRIFQPEIPTPTAVYLKEVY LHIFRTLRGLSEITTDNPKFKNYFTLVGVIEKILNPLNEMRDEDEIEAITVIKCFFKG FLVLTSGKAWKKNLGAECQKLSKNEGPSDADPVTESDEDLDNDNRMSHGDQEMNDSII NKLVNIAKEILSSMEYVPNEIMDVILYQITSHQRTNFPEARMMAEKVIKVCLEKENPS ADENVLIRSIRNVITSAAKEGKLPEEFEKCGYDNRHKFFDLLRYLHYISEKLVAGATE ELKFWLQSDNPQYRKDAVRTVGLCTKDKHCQFGMESDDSTWNAFLNASSDRDEKVRYE FVDQAKNILFSNHSHLRGQVINALFRLSKDLDDEVRLHVVEIVTDVAKSKLEVISDKL LKLCAERMRDKKPKVRNTSIKLFMDLYHHIMTSKPEPYCKGVNASSSNRIENAALRYT ESDKNCVRFIPSAVLHVARIPHKFPAYTDSRLLIERYMQVYFIPYKSSASTRVKIMTS LHRDLDDLGRIMFADIITRSSQLRRAMLGILSQVGSSNEVTADSSAQIQTRISRIAQI FPEPAALERVMKGLVNQMALEEAIFADFKKLMDDRFTTKDNVEIALNMKSKIEKKLTG GKNAQTIFRHFLDRVIPLSFDSLAAKELINVVSETIAAKIDRKNWAETCFEKDLELLK LFSDQFAHAFADEETVELIRDKILEHDEAVSVEVALQCLSRIFENSKFRKTFNEESTR KARWYLLISKKLKEYVMREEPELRHSCKLATRLLASFLGKEKAVEFFDGEFATLVDRL HLENPAASNSFQVLAEISLIDVPHYFQRIMKIIESEKIGTMIMTSPDHDDEDPTLFDN LVHLEQQPWPKLTAAKVYAAKFTAKVLCAMLVLTDPDQKAEIATASQKFIDLLSEILE KNGDLGGQQCEAEKARLRVTAAGCLLKLASGITYRSKIRPHLFKRMAYMITDEAYCVR LYYAKHIRKGIGRRLPIEFAACYGLINLGLTEEDGENKMEAFKGICMNQAIQSFAERS EDRANAANLRGPQRAIFCAETVIAYVVWLLANYDGLEKIEKNADKGDSEEVLEQKAAN VNVLAQLQESMWVVMDALKLAKCNMQKVWLVLEKLKSCGDKPMRSEKSLTSVELIEHN KKIWALCDLGISMMLYRAKLQMEDQDSKDVGFNLQFFYVCEKNTFDPSNCYAPDVLIN SEKQRNGKLPKAGHIFQVADITVVAPQEERGNETSASNSSRNVSRRTGANTSGGKRKG VGRGGRRSGASVGSEDDEMKSPPQVKKTRSRRGVYDLPDEENEDEFIPPSKRRNARSS NRGGRDKEEEVDKMPDELIPPKRRGARTSNRNVPDKEEDEMPDELIPPKRRGGRSSAR AVPNEEEEDEMPDELIPPKRRAGPSPKATSSVNGITSQNDVSPKKRSSGRGSRSNKKE SEVESSSLEQDEERIDDVSLDNLVISPILNESSGRNRRSARTIAATATLTASTPLVNT KPKTVKRKRSEVLVEEQEEEEEEAPTPKNRTTGRNDPSTPRAKKASATVEKTNSVKTV SPVKKAATKETPKTPTRNSSRSSAKSSAKSPEKPPAKNSKTKVTSPKKNKYGMPMEED DETPTTSAPSVKFRTSRRLSKK" CDS join(586245..586272,586322..586531,586582..587255, 587298..587345) /gene="CBG18099" /locus_tag="CBG_18099" /standard_name="CBG18099" /product="Protein CBG18099" /note="contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase domain), IPR006186 (Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase)" /note="Predicted" /db_xref="GOA:A8XT11" /db_xref="InterPro:IPR004843" /db_xref="InterPro:IPR006186" /db_xref="InterPro:IPR029052" /db_xref="InterPro:IPR031675" /db_xref="UniProtKB/TrEMBL:A8XT11" /protein_id="CAP35614.2" /translation="MASAYKTIDDSMASRLDIDELIVKILSVGHAEKSMTKTVKEQDL MALCNLAKKSFLLQPVMVEVEAPIKVCGDVHGQYSDVIRLFNIARFPPHSNYIFLGDY VDRGRQNLELITLFLCYKIKFFDRFYMLRGNHECPAVNRVYGFYEECNKRYASTRLWL AFQEAFAAMPFTGLVSGRILCMHGGLSPKLTNIDALRELPRPMDPPSPSLHIDLLWSD PDNSITDWAPNVRGVSYIFGANVVKQAIETLGIDLIARAHQVVQDGYEFFAEKKLVTI FSAPHYCGQFDNSAAIMNVDENLLCTFHVLRPMSKKTITPSMH" CDS join(589164..589298,589487..590005) /gene="CBG25973" /locus_tag="CBG_25973" /standard_name="CBG25973" /product="Protein CBG25973" /note="Predicted" /db_xref="GOA:B6IKS3" /db_xref="UniProtKB/TrEMBL:B6IKS3" /protein_id="CAS00503.1" /translation="MVRYCPLGQPALLTGDFYENVARIPDFSWSVLLSSNPNTGSHEK SCIPHLLPCLLIRKFIYIQFLSFFFTISKFQTIFIFAVMIFYHLLIPCMVIHYACDAS IRPSMKEYPSFRLPGLKVFFLLTAVLVFFFAPGVSTPSDVCPPKIERVCSEIYFWTIF PYLFFSFASIKYLVYACQTKTFYLLENKTIIGEIKEKEGFGWITHIDEEKKPVVVSQ" CDS complement(join(591435..591614,591667..591900, 591954..592127)) /gene="CBG18101" /locus_tag="CBG_18101" /standard_name="CBG18101" /product="Protein CBG18101" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XT12" /protein_id="CAP35615.1" /translation="MSFGDYLILVQNTFLIALISCPTWILCKGKKKASGGGGAQTPSK RGSSTESLAVKSAIKPAVTDPSPSTLGPVKEETKNEEPKAGEVKTSGESKDAGGGGEK RGSDDGKDEGQKDEKGSDGKESKDRSLKPFPKFEMPTESKKKKKMNDHEKDKKEKVKA GFYQEKSDEDDTLDKVDSLRVEQSDKTKRSQKKKK" CDS join(592938..593373,593422..593516,593561..593766, 596087..596153) /gene="CBG18102" /locus_tag="CBG_18102" /standard_name="CBG18102" /product="Protein CBG18102" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XT13" /protein_id="CAP35616.2" /translation="MSLCFIVLCSKKKSEKDSKVLPSDESSYGGVKSDKKKKKKKNKV EPKAEDQNNVQKVPDENEKLKSGEKSKSKSRKVKTKTTQEADSSSRKKKKSTISKATT LEVQNEVKANTRSGKTQNIGLDGDVIPAELCGKMDKTIVEVDNPAIHDRVTRVAESDL IFDPKVIKYQGNVDNEKNKSEIEALEKEMEAACAQHEKRNRNPNKKSEDSKESLENVP ADRRVKMKPEACLLFETKEQQTEEDEIHDVQSSTKKKQGFRYNISKLSS" assembly_gap 594506..594942 /estimated_length=437 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(600468..600604,600819..600876,600923..601341, 601392..601776,601828..601977,602030..602167, 602215..602411,602578..602758,602804..603373, 603404..603624,604007..604231,604354..604692, 604739..604886) /gene="Cbr-trp-1" /locus_tag="CBG_18103" /standard_name="CBG18103" /product="Protein CBR-TRP-1" /note="C. briggsae CBR-TRP-1 protein; contains similarity to Pfam domains PF08344 (Transient receptor ion channel II) , PF12796 (Ankyrin repeats (3 copies)) , PF00520 (Ion transport protein) contains similarity to Interpro domains IPR002153 (Transient receptor potential channel, canonical), IPR005821 (Ion transport), IPR004729 (Transient receptor potential channel), IPR000102 (Neuraxin/MAP1B repeat), IPR020683 (Ankyrin repeat-containing domain), IPR013555 (Transient receptor potential II)" /note="Predicted" /db_xref="GOA:A8XT14" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR002153" /db_xref="InterPro:IPR005821" /db_xref="InterPro:IPR013555" /db_xref="InterPro:IPR020683" /db_xref="InterPro:IPR036770" /db_xref="UniProtKB/TrEMBL:A8XT14" /protein_id="CAP35617.2" /translation="MLSAQGRRFSRCAPSPRPRNRNLTNMPPPAAVHIRTNDMISPEE RRFLEAAELGNKPTLQEFLDYHDGERRLNVNCLDSMGRTALEIAVDNENMEVVELLLQ QPDIRIGNALLCAIREGKTRNLYPPKKILISGVYRLVEVLVNHPNITKEMLGEGWTQA LDPSEAASAEYSSDISPVILAAQLNQFEILQMLIRKDAKIDPPHNHTCICETCDRERL NDSLQYSLKRINTYRALASPAYMSLTSSDPINEAFKLSWALQRLAFEEHEFKETYLQL SEQCKQYSCDLLSQCRSSEEVIAILNKENDNNDNIDLWASKLSLARLKLAIKYEQKAF VSHPHCQQLLTSIWYEGIPYRQQSGTWASFFLYAFLLAFWPVFCLLYILMPRSRLGKL VRSPFMKFFYYSISFATFLGLLTWATFEDYRYEKGERGGVTRASDRGPPATWVESLVF TWVIGMLWSEIKQLWEEGFKRYMRQWWNWLDFLMICLYLCTISIRLSAYYIFTYREDP YRYTVRTHWQSEEPMLVAEALFAVGNVFSFARIIYLFQTNPYLGPLQISLGCMLVDVA KFCFIFVLIISSFSIGLAQLYWYYDPNTDVCVPGSTCRSSTNVFSSIADSYLTLLWSL FSITKPEDTDVIENHKITQWVGQGMFIMYHCTSIIVLLNMLIAMMSHSFQIINDHADL EWKFHRTKLWMAHFDEGSSLPPPFNIIITPKSLINFVNCLLNTVRWLLGKYTYQKNRN RATIRSKKAFQRPGYSRKRNEMEKSGGQDDDSGKAPLTYASIIQRLVARFIHQTKKEM KMDGVNEDDLHEIKQDISSLRYELRDDRRREIVRSSSHIDAVKRDIMRTMSTNSRARV YGGSMRLPKTRPSVAEESEEEDKSDETSSSDEEADETRSRKSSVLYTPPVNSTLPGII SEEAPVRKHPKRRASEADSKLPDRPLSETFTSSFAVRNFSPNCLKYEFQPKLLPVFAQ PPHSALRKTDTSMSFPINGTSLEASIVKPPRGVLRASQENLNTVELMEMLRKEMNEKF DRLISGMVEVKSPASQSHVEFSVDK" CDS complement(join(605049..605198,605724..605864, 606362..606658,606702..606863,606931..607211, 607260..607314)) /gene="CBG18104" /locus_tag="CBG_18104" /standard_name="CBG18104" /product="Protein CBG18104" /note="Predicted" /db_xref="GOA:A8XT15" /db_xref="UniProtKB/TrEMBL:A8XT15" /protein_id="CAP35618.2" /translation="MFATLYFFLPFSAAGAFIANVIYLIVVTVGIRKGKLPLKRYALT INRTCADIFTILVGAYFYMKQKMERCDSHICLPVESGVSRYVLQVVFVLNYWCVSLSY SGIAVLTNYAVNLTSMKVAKYIVMGWMALLFCFFLCVLLVHQGELDYNSNSVIHLFLD DFDSDEYIGEWIVDLCQHINTHPGTRSLIVTILPPILFYLISVVSYVFIIHLLFSRRK VSSYHRHWGSMLRLGIHLILFAGTCALTGTAYLGSFSIGNFCEQHQKNEPMCLEAVVS YMWNTAAALIGWICRMVIDATVDTVDIACFFIIHSKISCHKTSTGPSRKSESVQMESL IKKPPSRTRRLKITAQKKATILEESIA" CDS join(615004..615046,615450..615911,616337..616593) /gene="Cbr-gsto-2" /locus_tag="CBG_18105" /standard_name="CBG18105" /product="Protein CBR-GSTO-2" /note="C. briggsae CBR-GSTO-2 protein; contains similarity to Pfam domain PF02798 Glutathione S-transferase, N-terminal domain contains similarity to Interpro domains IPR005442 (Glutathione S-transferase, omega-class), IPR004045 (Glutathione S-transferase, N-terminal)" /note="Predicted" /db_xref="GOA:A8XT16" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR005442" /db_xref="InterPro:IPR010987" /db_xref="InterPro:IPR036249" /db_xref="InterPro:IPR036282" /db_xref="InterPro:IPR040079" /db_xref="UniProtKB/Swiss-Prot:A8XT16" /protein_id="CAP35619.1" /translation="MPVLAGINSKVLKNGDSEPSPPPAGIYRIYNMRFCPWAQRALIY ASVKNVPSEVINIHLKEKPDWYFSKHYKGQVPALELDEGKKHVIESAHIPEYLDDLFP ESRILPSDPYEKVQQKLLLERLAAVAPAFYAAAQAANNPEGRDEKYAALVKAFEDAEK LLTGDFFSGKAKPGFADYLIFPNYQRVFWLSHILPNSPFSSESFPGPNFPKLAKWYRT LDSIPEVAAASQPTEMGVGFFNDYLKGTPNYDYGL" CDS join(619687..619726,620221..620357,620405..620508, 620556..620672,620984..621160,621697..621916) /gene="CBG18106" /locus_tag="CBG_18106" /standard_name="CBG18106" /product="Protein CBG18106" /note="contains similarity to Pfam domain PF03227 Gamma interferon inducible lysosomal thiol reductase (GILT) contains similarity to Interpro domain IPR004911 (Gamma interferon inducible lysosomal thiol reductase GILT)" /note="Predicted" /db_xref="GOA:A8XT17" /db_xref="InterPro:IPR004911" /db_xref="UniProtKB/TrEMBL:A8XT17" /protein_id="CAP35620.1" /translation="MKKLTRDTQEPLLPHIRPLTKNKIRKYLYAAIFIIAIYLLSRSL NNNNIIQTGIGRNGDFIEFQPNVLAPVVEPVVNNVKLDIYMEAQCPDTSRFFRQQLKK AWDLLGRLNRIELNVIPFGKARCTERGNDFECQCQHGPTECEINQLMNCVIDRYGFPH IYLPAVLCMQGKYSLDEAMKCVTEHFPVEYNRMRECASGPRGRRLLALSGQKTASLTP AIDFIPWIVINGARNSDALYDLTQNTCEAMQPIPQVCREYLSSIQK" CDS join(624338..624572,624622..625109,626042..626395, 626442..626594) /gene="CBG18107" /locus_tag="CBG_18107" /standard_name="CBG18107" /product="Protein CBG18107" /note="contains similarity to Pfam domains PF08028 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02770 (Acyl-CoA dehydrogenase, middle domain) , PF00441 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02771 (Acyl-CoA dehydrogenase, N-terminal domain) contains similarity to Interpro domains IPR013107 (Acyl-CoA dehydrogenase, type 2, C-terminal), IPR006090 (Acyl-CoA oxidase/dehydrogenase, type 1), IPR006091 (Acyl-CoA oxidase/dehydrogenase, central domain), IPR006089 (Acyl-CoA dehydrogenase, conserved site), IPR006092 (Acyl-CoA dehydrogenase, N-terminal)" /note="Predicted" /db_xref="GOA:A8XT18" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR009075" /db_xref="InterPro:IPR009100" /db_xref="InterPro:IPR013786" /db_xref="InterPro:IPR036250" /db_xref="InterPro:IPR037069" /db_xref="UniProtKB/TrEMBL:A8XT18" /protein_id="CAP35621.1" /translation="MALLARKAPAFLPASTSSAVKHMIYEDSHFAMRNSLTKMIKEKI NPNVAQWEKSGRYPAHYVFKMFGQLGVFAVNKPVEFGGTGRDFSMSIAVAEQIGAVDC GSIPMSVMVQTDMSTPALAQFGSDFLRNRFLRPSINGDLVSSIAVSEPHAGSDVSAIR TYARRYGTDLIINGSKMWITNGDQADWACVLVNTSNEKNLHKNKSLICIPLDTPGVHR STPLDKLGMRSSDTVQLFFEDVRVPSSYIIGEEGRGFSYQMKQFNDERLVTVAVGLLP LQKCINETIEYARERSIFGKTLLDQQYVQFRLAELEAELEATRSLLYRTVLARCQDED VSMLTAMAKLKIGRLARKVTDQCLQIWGGAGYLNDNGISRAFRDFRIFSIGAGCDEVM MQIIHKTQSKRQQQKSI" CDS join(646310..646390,646600..646723,646769..646903, 646951..647258,647304..647636,648049..648164, 648400..648496) /gene="CBG18111" /locus_tag="CBG_18111" /standard_name="CBG18111" /product="Protein CBG18111" /note="contains similarity to Pfam domain PF10204 Dual oxidase maturation factor contains similarity to Interpro domain IPR018469 (Dual oxidase maturation factor)" /note="Predicted" /db_xref="GOA:A8XT19" /db_xref="InterPro:IPR018469" /db_xref="UniProtKB/TrEMBL:A8XT19" /protein_id="CAP35622.1" /translation="MLWFGGNPSPSDYPNAAIPNFNMHAFVIFSVFLIPFIAYLLILP GVRRKRVITTVTYVLMLVVGASLIASLILPCWASGNQMIYTQFRGHSNERILAKIGVE IGLQKVNVTLKFERLLSSSDVLPGSDMTELYYNEGFDISGISSMAEALHHGLENGLPY PMLSVLEYFSLNQDAFDWGRHYRVAGHYTNAAVWFAFACWCLSVVLLFLLPHNAYKSI LATGISCLIACLVYLLLSPCELRIAFTGENFERVDLTATFSFCFYLIFAMGILCVLCG LGLGVCEHWRIYTLSTFLDASLDEHVGPKWKKLPTGGPSLQGVQIGTYRTNTTNSSRD KSSLTSDKTAGSSGFQSRTSTCQSSASSASLRSQTSIETVHDEAELDKAHVHFLQDPC SSSSL" CDS complement(join(649351..649437,649996..650100, 650146..650477,650527..650716,650759..650957, 652397..652560,652608..653312,653356..653450, 653496..653775,653823..654079,654305..654624, 654991..655087,655135..655240)) /gene="Cbr-glr-1" /locus_tag="CBG_18112" /standard_name="CBG18112" /product="Protein CBR-GLR-1" /note="C. briggsae CBR-GLR-1 protein; contains similarity to Pfam domains PF00497 (Bacterial extracellular solute-binding proteins, family 3) , PF10613 (Ligated ion channel L-glutamate- and glycine-binding site) , PF00060 (Ligand-gated ion channel) , PF01094 (Receptor family ligand binding region) contains similarity to Interpro domains IPR019594 (Glutamate receptor, L-glutamate/glycine-binding), IPR001638 (Extracellular solute-binding protein, family 3), IPR001320 (Ionotropic glutamate receptor), IPR001828 (Extracellular ligand-binding receptor), IPR001508 (NMDA receptor)" /note="Predicted" /db_xref="GOA:A8XT20" /db_xref="InterPro:IPR001320" /db_xref="InterPro:IPR001508" /db_xref="InterPro:IPR001828" /db_xref="InterPro:IPR019594" /db_xref="InterPro:IPR028082" /db_xref="UniProtKB/TrEMBL:A8XT20" /protein_id="CAP35623.2" /translation="MVPSDRRSSWSMLATVLLTVLNFTIVDPYPSHIIIKSFGNNEEV SRVALKAMEYTSDHINSRDDVPFKLAFDHRVVEEGAAVSWNMVNAVCDELKEGAMALL SSVDGKGIEGIRGVSDALEMPLISLTAPNNDEQQQFGNLFEVSVRPPISELLADFIVH KGWSEVLVMIDPLHASLHLPSLWRHLRTRTNTSVKASMFDLPSDEAQFESYLMQFNMM RNNETNRILIDCASPKRLKKLLINIRSAQFNQANYHYVLANYDFLPYDQEMFQNGNIN ISGFNIINKDGREYWSLKKHLKTSSSLGGGDDVSVEAAVGHDSMLVTWHGFAKCLQAN DSLFHGTFRHRRFFNRGFPGIYCDPLSDRSHPNRPFSSFEHGKTIGVAFRNMKIGAKE GTLTGNIEFDRFGNRKNFDVSIVDLVSNTKATFNSKEVLAWRQGVGFFSNRTVAQHSR KSQSDHKDNQVIVLTNLVAPFVMIKRECVEMGNLTECQGNNKFEGFCIDLLKLLADKI EGFNYVIKLGTKVGYCGNLFKMFLSFQAGSKQPDGSWDGMIGELLNGNAHAVVASLTI NQERERVVDFSKPFMTTGISIMIKKPDKQEFSVFSFMQPLSTEIWMYIIFAYIGVSVV IFLVSRFSPYEWRVEETSRGGFTISNDFSVYNCLWFTLAAFMQQGTDILPRSISGRIA SSAWWFFTMIIVSSYTANLAAFLTLEKMQAPIESVEDLAKQTKIKYGIQGGGSTASFF KYSSVQIYQRMWRYMESQVPPVFVASYAEGIERVRSHKGRYAFLLEATANEYENTRKP CDTMKVGANLNSIGYGIATPFGSDWKDHINLAILALQERGELKKLENKWWYDRGQCDA ALTVDGSSASLNLSKVAGIFYILMGGMVISMLAALGEFLYRSRIEARKSNSNSMVANF AKNLKSALSSQLRLSIEGGAVAQPGSQSHNAIRRQQVAAFLPANEKEAFNNVDRPAST LYNTAV" CDS complement(join(656563..657024,657114..657326)) /gene="CBG25974" /locus_tag="CBG_25974" /standard_name="CBG25974" /product="Protein CBG25974" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKS4" /protein_id="CAS00504.1" /translation="MSNCQETPDVGHFAVKEDAFEVPTEASNGIHEHLAPENGNPKKI TALDKEKIGGLVVNFQENRPLRDLQPMKSRARKPKKEKETASTEPQTDTKPRRTRKRC YEVAKKTGSGIATKIRKARKRPVNTNFDQLMKKFSKLRIAPARRGRKPKIVVPAKTKV PRKPRAPRRKSQSVDVLCNFFGKLCIDTAKIKKRPRKSAEQKKNEVVDRLKNSLHIGS GDEENL" assembly_gap 657821..658346 /estimated_length=526 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(658853..658913,659072..659442, 659589..659729)) /gene="CBG25975" /locus_tag="CBG_25975" /standard_name="CBG25975" /product="Protein CBG25975" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKS5" /protein_id="CAS00505.1" /translation="MGPSGWRATIRTPPPAMEKAEHGWLNRGSKMYQGLMRGAEVNVG MRQSKRIKCVLQREDGHTNSKQTGYPELFIGKLGNYHSGATNGLIFKLAARSLSLTRD FKKDSSQMPIGRKELFEGPSKCQNQDCSKKNYRLVWNRHADQHEVYQQHRKRTHQHRG STMLISFLHRRAFITSNKPKGRSLTLQNQK" CDS join(660929..660993,663263..663602) /gene="CBG25976" /locus_tag="CBG_25976" /standard_name="CBG25976" /product="Protein CBG25976" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKS6" /protein_id="CAS00506.1" /translation="MSFHCSLLLKKYIKVLSDHFGRKKGVKRRADYENGPEKLNEKIK RWANKKDEEEEKFNSMISSDELVGGNTQGVDNCQVIVVGHWKFGSNRMMAMFTELLLI GTLLDQFNENKKSKKKKGVYCFNDLWTRCLMG" CDS 666333..666950 /gene="CBG18114" /locus_tag="CBG_18114" /standard_name="CBG18114" /product="Protein CBG18114" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XT21" /protein_id="CAP35624.1" /translation="MNSDNSHHRHKRQQQYNTHQVPGFLPNTYQPDAFSSDARRQETL RLNQAFFDSLTQPQQSDPILTPQMDSQPIHVPTMDQQEPQYHHTFKNRPIPVVFADPE DPKHREPTIFVEVHGDDSNATTKSTPTLEFVQFSLEPNEDGIYQSTPGNEPSFFESEA TRAIIEALTRDDPRYIQKDFRLEFLDPDTEDVNLENMEKLDKMRH" CDS join(667174..667669,668605..669377) /gene="CBG18116" /locus_tag="CBG_18116" /standard_name="CBG18116" /product="Protein CBG18116" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XT23" /protein_id="CAP35626.2" /translation="MLFSGTSSGQSSYNTNSVQRDSTGSSSSNQPGYLPDYQGDRYTD PQRIADTQALNRAFFDSIGGAPSPPPETPAQQGMNGGSTASPTGQYNQQQQQYGTNQQ YNPQQQQYGTNQQYNPQQQQQYGSTTSYSSNGPALYATGTTNYPTLYQPSSSSPQYMN NGCTTCSTTTTYAPTTSYGYSTQYYNPSSSSRTSSTGYSNPSSTYGSTQQQGTNQNFV AYDTTNQNSPYYYQRVPSTAQYNSVLGVNAGFPQNSNQNQLLRDQSSNQGYGMNQANN QQMYNTGYNNQGSQYQNQNQNQMYNNPQNTMTTTLMYASSTQQQPYQQQQQQNNNQQM YSNQQYNNQQYDNNMGYNNQHMYNPSTPQYSSSIPSPQYSADAISCCSQVSSTCCYQT QQGYNSNQQQQQPGNNLQYSPSVYQYGRKK" CDS join(672189..672318,672482..672600,672648..672713) /gene="CBG18117" /locus_tag="CBG_18117" /standard_name="CBG18117" /product="Protein CBG18117" /note="Predicted" /db_xref="GOA:B0K0A4" /db_xref="InterPro:IPR039962" /db_xref="UniProtKB/TrEMBL:B0K0A4" /protein_id="CAP35627.1" /translation="MPKSNKKYNANLSGINEIRCVTQGSSIFCFIILHIIFSWLNDLY DVKFNLNVKPAEQKRDEFDDDEENPLAKIPTKPRIPKQKQTTGTLGASIRLAGKSLSL FQ" CDS complement(join(674594..674794,674846..675059, 675107..675252,675444..676301,676353..677235, 678096..678183,678237..678375,681635..681946, 681995..682249,682302..682531,682646..682686, 683772..683839,686512..686801,690919..691016, 691088..691250,691309..691447,691493..691745, 691897..692089,692142..692289,693244..693396)) /gene="CBG18119" /locus_tag="CBG_18119" /standard_name="CBG18119" /product="Protein CBG18119" /note="contains similarity to Pfam domains PF00620 (RhoGAP domain) , PF00169 (PH domain) contains similarity to Interpro domains IPR001849 (Pleckstrin homology domain), IPR000198 (Rho GTPase-activating protein domain)" /note="Predicted" /db_xref="GOA:A8XT24" /db_xref="InterPro:IPR000198" /db_xref="InterPro:IPR001849" /db_xref="InterPro:IPR008936" /db_xref="InterPro:IPR011993" /db_xref="UniProtKB/TrEMBL:A8XT24" /protein_id="CAP35628.2" /translation="MEEHHRRLHVKAERASVIGGDIVDGAFGSWALRAARSEHQLKQQ SNEDLAQNARISALLGEMRPRMSATPPNGHQQHHPVQQRRKANTTNIVDVSSQIPTAR NAIYGSWQDRHRPSRLYGSQLVSSSSTLPKYDQLYCNTNAINGNGSTNTIATTGIRRE PPEYGKAGRSVSTWQITNSEHRPTLQAGWLKSSRPLARGALSPAAYFRDLENRHGSGA SSPIVGGLSVVAVPITQRIVSTTGGVPVNDAVNAPVSTDVENQQQGELAGQGTSTLSR NTPRQASFMAAMQRHPLKESNSIESSDKENPELEPKASPFEKEDSEDSLNPGIGETPI RRTRKGNASMRCRQSSRSLGGLDFEKLRMGTTRIEDNNTASNGDSVEMSSSTSSSRKN SRDDGLTSSPSPTAAPAAPVFSTSSTSSVSTSGEAASTTTAAPAAVATTSRQTSSNSS VDSNHNGGSKKYKRILEYSLKSQRKHIHRDKNVSFSLRTSSLVQLGFQLCFQSNEDDT PRQTQIIQSSSISHDTTTSGRELPSSLMGSMTSMELRSGRATTSSATTTTSNSGQNTS RSLNAPHPPATHRLQRFIALFNSSVSKASDGSGEPKKSRMKRSRTSLPASRFALPGTI LQRDGVARQTWVKHQEIALGKSGKRNHWEDRWAVLCRRSLYLCVESPAYTSEKTVELS SHTRVDICNAIVDIAYDWLSSSFSKQRHVVRIVTQNRSEHLIELNTESEMLSWISVLQ SSSEDGLSAVGGVADENEGENSSGNNNKVSSNSAMLHNSQSIASLASSSCSTATTSEF LNSQHPLQPVNQQQKQQQTVNELSTGVTSHLPTSKSFGGLSTTASSTTESAKNRLIMH RYIAKNSQLQSPTANKKMDVDPSSVPSGSSTTTTAFHHSSQAGTSRESENGEALTASG TTPKSGRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAAPQPVLGVRLADCAIGNCEDHV PMLVQICVCVVETYGMDTVGIYRIPGNTAAVNALKESLSNKGFDSVDLSKVESLDPRW RDVNVVSSLLKMFLRKLPEPLLTDKLYPFFIDANRISTHHNRLHKLRNLLRKLPRPHY DTLRFLIIHLSEITKHSDVNKMECRNLALMFGPSIVRPSDDNMATMVTHMSDQCKIIE TLIHYNIWMFDETSTTEDAVPEQHPADGQNPLEPGGYGVGVPTGVSAASFNDMHNLIR KANEDQAAAMMNEGGKGQKIKNMLRRNSRRDKSKSKLKIESTAPAAVNPRGWTQPTPS NTSGASVESAFCGNYQERDIDAEIECRQTVSPQMASGSADGASSTRLDQSPSLESSLG SLPDTSRTEPILGSSGYGNDDEEGKEAARRKRQEEMYSARRIFIAGVAGAAAATTTSA DAEKAAIDALANHSQHLHLASSPAFEVLSEETREKIRRMQKKQSWHDTKELRSTGELL KTYSPTKDLTDALSCTSDYSTTSSAPLSTNPPLAVACADQPNSSSDYASSDPSPCARN PSTSPASRPSNLAISPSQLHVTTSTTSQAQPPMSRSQKIRLRTKLGSRDPARRHTLSD VDTLKEGRLDKLARWFGIRKSSPDVSRDEVSDDDKNNTQSQQPPPLPSAAPPVIVRTS PNELTPVSGDEQL" assembly_gap 697407..697931 /estimated_length=525 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(700242..700337,700383..700646)) /gene="CBG18121" /locus_tag="CBG_18121" /standard_name="CBG18121" /product="Protein CBG18121" /note="contains similarity to Pfam domain PF06747 CHCH domain contains similarity to Interpro domain IPR010625 (CHCH)" /note="Predicted" /db_xref="GOA:A8XT25" /db_xref="InterPro:IPR010625" /db_xref="InterPro:IPR039289" /db_xref="UniProtKB/TrEMBL:A8XT25" /protein_id="CAP35629.1" /translation="MSSPKNEEVVRISANEYWQDIKDEYLQKLASTDPAEIYPSNNPG PETADGKVNFECHCVGHLVASPCGFEFREVITCQKSSSEDQMEQGACGKELLSFMECV TRTQCFGSSGSPDKYSQ" CDS join(700844..701044,701095..701352,701403..701576, 701629..702224,702275..702641) /gene="Cbr-ess-2" /locus_tag="CBG_18122" /standard_name="CBG18122" /product="Protein CBR-ESS-2" /note="C. briggsae CBR-ESS-2 protein; contains similarity to Pfam domain PF09751 Nuclear protein Es2 contains similarity to Interpro domain IPR019148 (Nuclear protein DGCR14)" /note="Predicted" /db_xref="GOA:A8XT26" /db_xref="InterPro:IPR019148" /db_xref="UniProtKB/TrEMBL:A8XT26" /protein_id="CAP35630.1" /translation="MSSFDKIDEKAKLIVPKSTNEGKVVKVSQKTLASKKHERQVVPE EKYIAGLDKIIEKDYFPQLKKMQAQKEYLEAVAKKDITKIKELQMKYCSTGSIRTDRT SINPPTTRSTTSEAPYDEQFDSETPGPSSNSGKHDWMQSPMPFANEEGDNEAINKKRR KKNQETLTSYLNKYTSEDNASFEELAKVMREREDARRPWVYKAEEEHNKNLVVRQAIA AEADVQLALKHAVDSDDNRPLHLDNWKYKAWNTVLFNPEGAALTPAEQAEAAKRQKTE INRKGTRFPDSGRLKPSDEAMTRAAVSHALANAGKVDFLGNEVTPANSFKLLETPNPN PDDMDSPLMTWGEIDGTPFRLDAPDVTEHTLPDAAPIFKIPEMPYREKIAQSMNDSIA AKYRDKRKVAIKAAEGAHRTPGFGSKRVSDKLAQLSPAAQKLATKKLGLKMIPVHRSP FASPKIGSAWSRSSDSKRSETPGSAWSRGSGTPGSSWSQGARTPGTPGIESMIRKPRR EDDDGAGPSRPSVAGRAQAGDFF" CDS complement(join(702980..703135,703187..703371, 703552..703665,703768..703852)) /gene="CBG18123" /locus_tag="CBG_18123" /standard_name="CBG18123" /product="Protein CBG18123" /note="contains similarity to Pfam domains PF07653 (Variant SH3 domain) , PF00018 (SH3 domain) contains similarity to Interpro domains IPR013998 (Nebulin), IPR001452 (Src homology-3 domain), IPR000108 (Neutrophil cytosol factor 2 p67phox), IPR011511 (Variant SH3)" /note="Predicted" /db_xref="GOA:A8XT27" /db_xref="InterPro:IPR001452" /db_xref="InterPro:IPR036028" /db_xref="UniProtKB/TrEMBL:A8XT27" /protein_id="CAP35631.1" /translation="MNHQTYSAPTQAVAANSHLIYSTEQGGAVSPIPQKTIGSIADYD PMNGQWGTAANQPRNSEKLGYLKNQVDKGPARFCADFAGAPPSSVSSTSPHSTLSSPQ SAVSPTGKAGFAVKAIYDYSAADKDEISFLEGDIIVNCEKIDDGWMTGTVQRTLQWGM LPANYVQPHKLPTGLHRLS" CDS complement(join(704026..704144,704997..705093, 705139..705231,705599..705683,705729..705898)) /gene="CBG18124" /locus_tag="CBG_18124" /standard_name="CBG18124" /product="Protein CBG18124" /note="contains similarity to Pfam domains PF00880 (Nebulin repeat) , PF00412 (LIM domain) contains similarity to Interpro domains IPR000900 (Nebulin 35 residue motif), IPR013998 (Nebulin), IPR001781 (Zinc finger, LIM-type)" /note="Predicted" /db_xref="GOA:A8XT28" /db_xref="InterPro:IPR000900" /db_xref="InterPro:IPR001781" /db_xref="UniProtKB/TrEMBL:A8XT28" /protein_id="CAP35632.2" /translation="MSKKCAREDCGKTVYPIEELKCLDKVWHKGCFKCTVCGMTLSMK NYKGYDKKPYCDPHYPKTVASVVADTPEMRRIAENTKNQSNIKYHAEYEKMKGTKIEI ADDPELERLKKNTQVQSNVSYHGVLGQKARQEESRPKEEISPNPTPSVVEQPIQSTPT PPVNDQKPKAVQSNFKKGPASAKTVKA" CDS join(712885..712929,712975..713058,713133..713207, 713255..713364,713410..713605) /gene="CBG18125" /locus_tag="CBG_18125" /standard_name="CBG18125" /product="Protein CBG18125" /note="contains similarity to Pfam domain PF03061 Thioesterase superfamily contains similarity to Interpro domains IPR006683 (Thioesterase superfamily), IPR003736 (Phenylacetic acid degradation-related protein)" /note="Predicted" /db_xref="GOA:A8XT29" /db_xref="InterPro:IPR003736" /db_xref="InterPro:IPR006683" /db_xref="InterPro:IPR029069" /db_xref="InterPro:IPR039298" /db_xref="UniProtKB/TrEMBL:A8XT29" /protein_id="CAP35633.1" /translation="MVSHSESPADIVTEPTNEELLAEQVRVFERMKGSTNFNRVAEDV YPVEVTKTKLVCEMVVQEQHLNSKGTLHGGQTATLTDVITARAVGVTVKDKGMASVEL AVSYLLPVKVGDVLQITAHVLKVGRSMAFTDCEFRRKSDGKMTAKGKHTLAFLPNQPG ISVENGSQF" CDS complement(join(714249..714539,714903..715322, 715369..716890,716938..717473,718652..718776, 720532..720661)) /gene="CBG18126" /locus_tag="CBG_18126" /standard_name="CBG18126" /product="Protein CBG18126" /note="contains similarity to Pfam domain PF05699 hAT family dimerisation domain contains similarity to Interpro domain IPR008906 (HAT dimerisation)" /note="Predicted" /db_xref="GOA:A8XT30" /db_xref="InterPro:IPR008906" /db_xref="InterPro:IPR012337" /db_xref="UniProtKB/TrEMBL:A8XT30" /protein_id="CAP35634.2" /translation="MQSKLERPISQYSYFYYDGRSQTIAANRRCKGQNILEFGFFLFS VACENVLERGNSTNTMSSDCSSADTDGPPETKRFRIDMNTQAGLDVPSVSTNCAVGGE ASQDGQSPAGPSSASYRSSNSSVISSSESPNKVEDVDVGPEEEDEPEDMEMDGNDIGA TGTIVNNSEIFEMLNKTFGGVFNCDLEGIMRPNALLHSSSPPTPVQSVVPGAITVAQS PAAQLFANDDWSWHRNPAASIRSGGTNKQTPVWKYFVYNKAENLSRCIVGDCTYMLKG PHTSTLACHLKKHTREYSEFQKLKTEYSRTKLDQVPKIPDGAPHPLTLQTQNGTRQTG SPASTCNTNTNSSSSASSGSASGPTSGSNSTMDLSMKKPKKEPSSTKLNEMLLNGLRQ VSATNSTGSPPTTPQQPPPMMPNFVTNMMLQMNPLHMMLAQTLPAANPPTSTSATNTG LNALQQAGFALAANGQIIQSKKWRNDEKKQKELSSKLALALATSHIDPEILQNPLWKE FFEMAQPKFTIPTGSQYETIVNSFAQKLVQSVKSQLSTTKKLNLLLDITKITADISRV TISAAIPVGSGNSYDTQVILLAFRNIGGTQSEDLNAVFVKVLEDYSISPSSINRVICS GLNEITENTELPKQMESFSSRLSHCFHTWIKSSPTLESLRKNIFTMVFSYLTAPGAMQ RASQMLKTKFELPVTESFSFIIEDLLTHREIYQLKMEGLQPISDREWNKVIGIHSIMN IFKPLMNYTTEMTTVDTVIPTIVQIKNVLEKDVYQLGEIGSDLLSSLKQTVAFIMDPE HEQFDSTYIQATALNPQMAVTLNSDQMSLAKSLIESEISKRSKNLKKVQNVKKLAMGV DSLLANVLKKGDGSDGGACDALSIYGDLFQSITAGNSSESKENVVNQYFDEISTANSV ESMFMLRTFGNPMQAPLSYWKSCSSRCSELSELATELLSIPIFTLTTEKVLSFSPSSS TLNTNLILTNLNSCEQFEKQLLLRFNRQIVAKLFS" CDS complement(721668..721862) /gene="CBG25977" /locus_tag="CBG_25977" /standard_name="CBG25977" /product="Protein CBG25977" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKS7" /protein_id="CAS00507.1" /translation="MNWLGKLESPSKTGFTVLHNSISLKTVSSAQSVKNFQYINNLEK ISTATTSVFLKPTVNPLFGY" assembly_gap 732968..733287 /estimated_length=320 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 739803..740116 /estimated_length=314 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(745086..745205,745282..745460, 745509..745737)) /gene="Cbr-mrpl-32" /locus_tag="CBG_18131" /standard_name="CBG18131" /product="Protein CBR-MRPL-32" /note="C. briggsae CBR-MRPL-32 protein; contains similarity to Pfam domain PF01783 Ribosomal L32p protein family contains similarity to Interpro domain IPR002677 (Ribosomal protein L32p)" /note="Predicted" /db_xref="GOA:A8XT31" /db_xref="InterPro:IPR002677" /db_xref="InterPro:IPR011332" /db_xref="UniProtKB/TrEMBL:A8XT31" /protein_id="CAP35635.2" /translation="MNEARARILINLRQTIDPLLRIFGGGSQHPPSMGFVFDVAGQQI PIQKTSLTYGSVGKMIEDFSIVFGVPKYRTSKPKKVTRKFSFTRLLQPIDNLVTCPTC SNIHPSDTICNACYAKIHALTTEIKKKMMNYNPYVFVRFKGEPEAPAAVVKGKRVLEI DSERPTWFKKLTLKE" CDS complement(join(746821..747120,747166..747893, 747943..748320,748362..748476)) /gene="Cbr-rpn-3" /locus_tag="CBG_18132" /standard_name="CBG18132" /product="Protein CBR-RPN-3" /note="C. briggsae CBR-RPN-3 protein; contains similarity to Pfam domains PF01399 (PCI domain) , PF08375 (Proteasome regulatory subunit C-terminal) contains similarity to Interpro domains IPR013586 (26S proteasome regulatory subunit, C-terminal), IPR013143 (PCI/PINT associated module), IPR000717 (Proteasome component (PCI) domain)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XT32" /db_xref="InterPro:IPR000717" /db_xref="InterPro:IPR013586" /db_xref="InterPro:IPR035267" /db_xref="InterPro:IPR036390" /db_xref="UniProtKB/TrEMBL:A8XT32" /protein_id="CAP35636.1" /translation="MTPKAGETVVEKMEVDEVKPETQEKKEPVKDLNAIAVESIKEQL AALDKGEEHLVTRVLQVLPKTRKQLNDIVLHKLVSAHLSSDSQFGESLLKYLHYTPPP ADTEVQPMDTTTPKSKSPKKAMKPVYSSPESDCYVRLLVLLHLYAQKKHAEALTLGEQ QLTFIYNTDKRTLDGLAAKTLYFLCVIYEREGRLFDLQGFLNSRLRTATLRHFNESQA VLICWLLRCYLINHQYQSAAHLVSKVAFPENASNNDLARYMYYQGRIKALQLDYNSAA GYFLQAQRKAPQEGAIGFKQAVQKWVVVIGLLQGEIPDRSVFRQPIYRKCLAHYLDLS RGVRDGDVARFNHNLEQHKAEFEADDTLTLIVRLRQNVIKTAIKQISLAYSRIYIKDI AKKLYMTNETETEYIVAKAIADGAIDAVITSDVRDGPRYMQSSETADIYRTSEPQAHF DTRIRYCLELHNQAVKALRYPPKKKIAVETIEQAREREQQELEFAKELADEEEDDF" CDS join(749029..749135,749183..749510,749559..749886, 749931..750417,750463..751411,751460..751594) /gene="CBG18133" /locus_tag="CBG_18133" /standard_name="CBG18133" /product="Protein CBG18133" /note="contains similarity to Pfam domains PF00012 (Hsp70 protein) , PF06723 (MreB/Mbl protein) contains similarity to Interpro domains IPR018181 (Heat shock protein 70, conserved site), IPR001023 (Heat shock protein Hsp70), IPR013126 (Heat shock protein 70), IPR004753 (Cell shape determining protein MreB/Mrl)" /note="Predicted" /db_xref="GOA:A8XT33" /db_xref="InterPro:IPR013126" /db_xref="InterPro:IPR018181" /db_xref="InterPro:IPR029047" /db_xref="InterPro:IPR029048" /db_xref="UniProtKB/TrEMBL:A8XT33" /protein_id="CAP35637.1" /translation="MSVLGFDIGNLNCYIGVARQGGIEVITNDYSLHATPACVSFGPK DRSMGVAARQAVNTNIKNTVINFKHLVGRKFSDPIAQRFIPFIPCKVVQLPNDDIGIE VSYLGEPHTFSPEQVLAALLTKLRTIVESQLTDVKKVSDCVLAVPSYFTDVQRRAVFS AIQYAGLNSLRIINETTAIALAYGIYKQDLPEEDAKPRNVVFLDIGHSSTQASLVSFN RGKLQMVNTSYDLEAGGLWFDALIREHFRKEFKTKYGIDASTSPRPWLRLLDECERVK KQMSANQTPIPLNIECFMEDKDVTGKMQRQEFEELAAPIFNRIKQVLVNLFTEDVAIK PEDVEEIEIVGGSSRIPMIRQIVKDLFGKEPKTTMNQDEAVARGAAMQCAILSPTFRV REFAIKDSQPYRIRLSWNGPGDNGGENDVFAPRDEVPFSKLVSLLRSGPFQVEAHYAQ PNVVPHNQVHIGSWKVNGARPGADGANQKVKVKVRVNPDGVFTIASAIMYEPKIVEEV PAEAMEVDGNGNPDAPPAEPLEPVKKTKLIPVDLEVIESIPVKYDVQKFHELELRMQA ADAREKDKADAKNSLEEYVYEMRDKLSEQYADFITPAAADEFRSALTSTEDWLYDEGE DTERDVYEKRLYELKAVGTPVVERYREFETRKPAFDTFDQSILRVRKAYEDYVNGGPT YAHLDSKEMEKVINAIEDKKKWLDEARHKQETRSKTDAPVVFTEEINQNKNAFENIVN PILNKKKPAAPAPPKKEDTQPAAGDQPQSQPGEMDVD" CDS join(752534..752646,752699..752817,752863..753233, 753280..753538,753801..753895) /gene="CBG18134" /locus_tag="CBG_18134" /standard_name="CBG18134" /product="Protein CBG18134" /note="contains similarity to Pfam domain PF09756 DDRGK domain contains similarity to Interpro domain IPR019153 (DDRGK domain containing protein)" /note="Predicted" /db_xref="GOA:A8XT34" /db_xref="InterPro:IPR019153" /db_xref="InterPro:IPR036388" /db_xref="InterPro:IPR036390" /db_xref="UniProtKB/TrEMBL:A8XT34" /protein_id="CAP35638.1" /translation="MDKNQGKSSTDNSYSIGGSKGDGLDPLLIGSVGVLVLALTLIIW RLLKLQWDEKAARDRTEMLLAMNEGADDRRGANVAGGMRRNARRRVNRDEPEDGFVNH MMNDDDDMEEGGEDQFEYDADGKKIGKRKAAKLAAKEEKRQMREYELWEREERKRREE EREKKRDEEKAKEAAEEKAEEERLKKEREEKERKEYEEYLALKASFAIEEEGTDAIEG EEAENLIRDFVEYVKSNKVVNIDELSAHFGLKSEEAVNRLQHFIEEGLVQGVMDDRGK FIYISDEEFAAVAKFINQRGRVSIHEIAEQSNRLIRLETAVE" CDS join(754197..754367,754415..754603,754651..754887) /gene="Cbr-pqn-96" /locus_tag="CBG_18135" /standard_name="CBG18135" /product="Protein CBR-PQN-96" /note="C. briggsae CBR-PQN-96 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XT35" /protein_id="CAP35639.1" /translation="MYQSYPQQQQGFLPQQPSQPMMGSGAVPMAPVQQYGQQPSQPQQ QYQPHQQQQQLGQQPQQFQSSQQIQSPQLERESYQTALPPTVTPGWNDPPPMLSTAGA TPNRLSNMRRRPVDPSITGNVGYGAPAQTANPYGGATPYGAPQQDAQQYQQQQQYQAY SQQQQQPQYSQQQQQYGQQYPGAGAPPPPQQQQQQYGM" assembly_gap 757040..757525 /estimated_length=486 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 761511..762015 /estimated_length=505 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(762312..762466,762513..762615,763467..763570, 763616..763727,763773..764003) /gene="CBG18136" /locus_tag="CBG_18136" /standard_name="CBG18136" /product="Protein CBG18136" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XT36" /protein_id="CAP35640.1" /translation="MAERSFSSRPTTSSSFNKEVPSLSNSDDMLSQFTLPNYVELPNS FQSVDPENLPKKVRGDMDLTGKQLMPFLFKAADKLNAMKDKQMYLSRALSRNLNTRHW NRRIWEVGYRGPILPQQKATGRPDYPVSANRVNILRERLAREQVVMNLLTRPYSSAEA EKTYLETQKNVASLEELRAKEFENLEAQRMPGKPKNTEGSKATIRKRANVGNLLHRHT TVEDSLAALAERKRWD" CDS complement(join(764133..764347,764392..765223, 765274..765496,765543..765691,765738..765902, 765949..766077,766122..766346)) /gene="CBG18137" /locus_tag="CBG_18137" /standard_name="CBG18137" /product="Protein CBG18137" /note="contains similarity to Pfam domains PF01926 (50S ribosome-binding GTPase) , PF00071 (Ras family) , PF03144 (Elongation factor Tu domain 2) , PF00009 (Elongation factor Tu GTP binding domain) , PF00679 (Elongation factor G C-terminus) contains similarity to Interpro domains IPR000795 (Protein synthesis factor, GTP-binding), IPR005225 (Small GTP-binding protein domain), IPR001806 (Small GTPase superfamily), IPR004161 (Translation elongation factor EFTu/EF1A, domain 2), IPR006297 (Elongation factor 4), IPR006073 (GTP binding domain), IPR000640 (Translation elongation factor EFG/EF2, C-terminal)" /note="Predicted" /db_xref="GOA:A8XT37" /db_xref="InterPro:IPR000640" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006297" /db_xref="InterPro:IPR009000" /db_xref="InterPro:IPR013842" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR031157" /db_xref="InterPro:IPR035647" /db_xref="InterPro:IPR035654" /db_xref="InterPro:IPR038363" /db_xref="UniProtKB/Swiss-Prot:A8XT37" /protein_id="CAP35641.1" /translation="MNRQRLLKIWCLKKLGETHRCYSSAGDPTKLINFSEFTPEKIRN FGIVAHVDHGKSTLADRLLELCGAVPPGQQQMLDKLQVERERGITVKAQTAALKYQGY LLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQGVQAQTIANFWLAFEKNIQIIPV INKIDLPGADIKSVETQLKNLFEFNSEECLHISAKSGLNVEKVLDAIVERVPAPTANV EAPFRAMIFDSYFDHFRGAIAHIVVKEGSVKKGDKIRSYQNDKSYDVSEVGVMRPEMV KCTEVRAGQVGYLVCNMRTVKEAVVGETLFAAETPKESVQSFAEIKGVKATVYAGLFP VETADYESLKQAVERLCLNDPSVTVTPDASKALGLGWRIGFLGVLHMEVFGARLSQEY DASVILCQPSVEYRAKIKDNENIRKKRYDGMEEVRILDPSKFPEESDVDSFLEPMVKV RMIVPNEMMGTVNGLCSECRGERGEISSIDTSRLMILWRLPLAEVAVDFFERLKKLTS GYASFDYEPDGWQETRLVKLTILINGKEVSEFSQILPAAMARDRAKTLVQRLKREIPR QQFEVTIKACIGSSTKALSQIVIQPMKRDFSQLLKGNFGGGGMERLNKKLSHQKKGKE RMKMVGNIQIPKEAFLNVLKN" CDS complement(join(766854..767006,767050..767764, 768512..768555,768755..768808)) /gene="Cbr-cec-1" /locus_tag="CBG_18138" /standard_name="CBG18138" /product="Protein CBR-CEC-1" /note="C. briggsae CBR-CEC-1 protein; contains similarity to Pfam domain PF00385 Chromo (CHRromatin Organisation MOdifier) domain contains similarity to Interpro domains IPR000953 (Chromo domain/shadow), IPR023780 (Chromo domain), IPR023779 (Chromo domain, conserved site)" /note="Predicted" /db_xref="GOA:A8XT38" /db_xref="InterPro:IPR000953" /db_xref="InterPro:IPR016197" /db_xref="InterPro:IPR023779" /db_xref="InterPro:IPR023780" /db_xref="UniProtKB/TrEMBL:A8XT38" /protein_id="CAP35642.2" /translation="MSAELYTVEAILEHRKRKGKNEFYIKWSGYDHSHNSWEPEKNIV DPTLIELFFEKEETRKKQLKEKKDKLAAAKKAAAQKAAPPSKRATTSSSSNRPSSSST SRSSRRQKSPPPKRQRLAGGEIRPDSDTDEEEPIQQRDEEEEQDDDEEEEVPVMKKKK SVKEEEEEEEEEEQDQEEEVQLPAVEAQAPEARPEPEHHEEKEEEDEEEEEDLKMNGE EKKEPVTTSTVTPSATADVQEGEEEKTEEEEHSEKPTIEKQEEEDGSTSEQEPIFKEA SESAPSTSEPSTSSGPSTSAAVPAPAPIAQAAPAAADDDDITIIE" assembly_gap 771463..771812 /estimated_length=350 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(775080..775313,775454..775561, 775879..775959)) /gene="CBG25978" /locus_tag="CBG_25978" /standard_name="CBG25978" /product="Protein CBG25978" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKS8" /protein_id="CAS00508.1" /translation="MRLSELKLNCPKCSYRTDASNIRKHIKRFHGVTEGDLAMNRETA GGGGSSRRISCPVSDCDVAKWVADRCKKTTTSFIVNKTVATASGKTIYHNCQHEGFYE RTGDVRYGHDTKKQTKEATCPAFLRVGQINAKRRKNGN" CDS join(776886..777005,777052..777140,777297..777426) /gene="CBG18140" /locus_tag="CBG_18140" /standard_name="CBG18140" /product="Protein CBG18140" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XT39" /protein_id="CAP35643.1" /translation="MNVSFCLQKNRENGRKTKVRSKKPKFRKTLQEALLLYFQKGARK SQFSCMSTGHSGKMQLRMRKEKVLEHYFETTINIIFCSSSSTEAKMDKTRSSDAVSAS STTAEENNIT" CDS join(779048..779140,779374..779778) /gene="CBG25979" /locus_tag="CBG_25979" /standard_name="CBG25979" /product="Protein CBG25979" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKS9" /protein_id="CAS00509.1" /translation="MTTFGLRKDLKSVTNLDLEELVKVLEIKISEDGYCSSKTNEIMI WDANKDQNCQYISIGKLDGIMSNGLWINSKNQIALSLGENKIVKDCNLDLIVSDEGFT VRQHVVHLHENEIPRIPTELKIPRSTGLTPQALTSTPSLQEMSIKTEIPRSEGLMNPQ KYQKE" CDS 779882..781189 /gene="CBG25980" /locus_tag="CBG_25980" /standard_name="CBG25980" /product="Protein CBG25980" /note="Predicted" /db_xref="GOA:B6IKT0" /db_xref="UniProtKB/TrEMBL:B6IKT0" /protein_id="CAS00510.1" /translation="MKQYFEFEKRKKEKLERQRLLNTGANTTTTSVNWNTTKKVKRST NQSLEEPFPLPTYEEYSKIKNDCLLLPSFEDYLKTKGLEISDFVKTRDACDTFPTYDE YVTKFAKYALEELGNRKSKNTETFGNQRIGRTGRQVYSDFKAAGEFQYLENKSNNLLR HTTEVMCDIFNEHTSLLETLIRENPRRYIQKQLNHSAIRVRSMDTNDDIIQVTFCKEI DDSDIEVVDLTHFDGFKTSLAFNQGQIPIRIKQFRDKIWYYKNDPSGGIISSSLALHP MANNVTNFKTFKEFDLNFLDDKVIFHEHILLDTKTNIEEELINEMREKADVSIDLHSN SQDGMIPHEILDEVSSIFEKYYIRIWRIYVTIGVTLFYIFIGRSIWMVLSPKTFFDSR KNINPRNRNPIFVRTKNHFQGEDYQGVELQDFKNEHRRSLVVD" CDS complement(join(785447..785541,785730..786573, 786646..786807,786919..787077,787663..787818, 788040..788234,788632..788790,788960..789115, 789399..789554,789727..789882,790044..791841, 792305..792511,792711..792784)) /gene="CBG18142" /locus_tag="CBG_18142" /standard_name="CBG18142" /product="Protein CBG18142" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XT40" /protein_id="CAP35644.2" /translation="MSGRTSRGRKRASKPDDMLSREELEGMYPAQTQGTGKDKVTFKR RRRLTPEPENELRRNETKAKPKPDAPNSLIPYGTGSYILSLSEATEKSFDNALISPFT QRDLIMCFIRFPWNAKNESKPLEMNIAISAVYNMDKVAEVLMEKLNIPKDVMKMAVSP ASKRSVNGTTTLRELAHKDIYMPHVLLNVSIVETDPAKKKFDEARKRQEEERKQPSPQ RSHGNPDDLNGIQAAPETTRAPIGSVIAHRNIEDIDYVNVLTNASPVVRNSGQEVVAP PTIKATIPASIQQNLNGMELNAYHQQSKQVQPPQRPRHEPIQRRNRYQQRQQRELQKA LLRCQQGPGQPIRLVLPIPQRQQLPIQQTNQHQQRQQLQPQQVPPQPPQRQDQPIQPI RLVLPNPQRQEQLIHPIQHEDQLQQHQQLQPQPDPRSPPQLHHQPNSVVLPNSQRQQQ PIQAIQQEDQHRQQQKLHAQPAPLSPPQRQEQPIRLVLPNSQRQGQQTHQQQQRQQLQ PQPAPLHPQQKMKNVPLSKVSSMVSYEDLPPSRIPPHRLILNPTTSRPPHPEQNQGLE KDRFGHLYAEFSVGDKRRILNEYPSGDITDYSKANDDEIHEFFKGFQPTRLLQILNIN KAKYLFNMKTIEDQMRKGSSGEEMNKKSNWQVYKDKTDTIDRQIRVIEKALVSTTVDA NSVRGAPPQPQLPHQQTGPSIQPILARAPGQSSNLPNDQTAQKQQPITTVDSNLVKVA PSQQHPPLQHVGPNIQPILARTPGKTANVSNEQSVQQRQPVTTVDASSARVAPPQQQH PRQQTGSNDQPILARAPDQGTDFLKSQTVQKQQPVTTVDASMVRVAPSQQQLPRQQIG LKISPILARSPGQAYSLPSGRIVQKQQQPVNTVNANLVRVASSQQQPPRQQIGPNVQP IISISPGQLSNLSKGQIVQQRPQQQPIITVDTNLVRVSPSQQQQQQQQQQQQQPPRQQ TGPNVQPILARPPGQSSDLPSGQTVQKQQPITTVNANLVRVASSPQQPPRQQIGPKIQ PNIARAPDQGSDLSNRQTVQKQPQPISTANANPVRVASSQQPAHRQQIGPNISPMLPR ANLSNSQTVQQRQQQPITAVEANSVRVAPSQQQVSYIFQHRQQIGPNISPIIARLPGQ SSSSSNGLTIQQQQQSTPKAPGQYTHPSSAEPIRPHELQQLHRTPGQNVPLPGGLSTQ RTLTYQRVPGPVIVSSNGQPIKLPPGLVATNQRIQLPAGAFNRVTTVRNNQRPPPPQP PHRSTLLQDKKSPKFHFIKIIDAQTEMFIREWHFESNPKQRLVFFFFKSTMESFNLFF QPFNRNNTIKAVHELSSFADEYDYAPTDFLTPYYKTNVYPKPGERMTQKMFYWYETRK RWDAAGVKIPVLNQEDQFKLKSALQDIQPYNSNLQAYRSTGFSSTKDILKVICFLDLE ML" assembly_gap 787313..787486 /estimated_length=174 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(798582..798668,798715..799072, 799499..799572,799657..799764)) /gene="CBG18143" /locus_tag="CBG_18143" /standard_name="CBG18143" /product="Protein CBG18143" /note="contains similarity to Pfam domain PF06201 PITH domain contains similarity to Interpro domain IPR010400 (Proteasome-interacting thioredoxin-like domain, C-terminal)" /note="Predicted" /db_xref="GOA:A8XT41" /db_xref="InterPro:IPR008979" /db_xref="InterPro:IPR010400" /db_xref="InterPro:IPR037047" /db_xref="UniProtKB/TrEMBL:A8XT41" /protein_id="CAP35645.1" /translation="MCSHGHSHNCASEHIPEGSGDDVHRYDMVSYIDLDKVTTLNESI DGAGKKVFKVMENRDDRTEFVESDCDHELLFNIPFTGHVRITGLSIIGDEDGSHPAKI RLFKDRDAMAFDDCSIEADQEIDLKQDPRGLVDYPLKASKFGNIHHLSILVSANFGED ETKVYYIGLRGEFQHEFRQRVAIATYESRAQLKDHKNEIPDSVTRSLF" CDS complement(join(800412..800516,800579..800741, 800790..800956,801000..801119,801174..801316, 801363..801479,801558..801632,801680..801764, 802253..802351)) /gene="Cbr-cyy-1" /locus_tag="CBG_18144" /standard_name="CBG18144" /product="Protein CBR-CYY-1" /note="C. briggsae CBR-CYY-1 protein; contains similarity to Pfam domains PF08613 (Cyclin) , PF00134 (Cyclin, N-terminal domain) contains similarity to Interpro domains IPR012399 (Cyclin Y), IPR013763 (Cyclin-like), IPR006671 (Cyclin, N-terminal), IPR013922 (Cyclin PHO80-like)" /note="Predicted" /db_xref="GOA:A8XT42" /db_xref="InterPro:IPR006671" /db_xref="InterPro:IPR012399" /db_xref="InterPro:IPR013763" /db_xref="InterPro:IPR036915" /db_xref="UniProtKB/TrEMBL:A8XT42" /protein_id="CAP35646.1" /translation="MGNSSCCLRTRSSSGEDKSYNNDGQYIRTNQVEFQYVNQVFPRD ETSTNFLPHISEREVAEGYEEDPSTNPTARPTFMERSKSEMKLKDNRRSCYMLDALAA GGHHPGVLPRSLRKSSSCSTIYIDDSTVSQPHLKNTIKCISLAIYYHISNRKNRGHER LMEIFEERLHPIFRDPIPPEQMTRDPDHRNIYRFVRNLFSSAQLTAECAIITLVYIER LLNYAEMDLCPSNWRRVVLGSIMLASKVWDDQAVWNVDYCQILRDTNVDDMNELERRF LECLDFNIEVPSSVYAKYYFDLRTLALANDLQLPIQPLYKERAQKLEALSRVFEDKVQ LSSLPKRARSAEYIVFEHPAVLS" CDS join(802879..803089,803146..803641,803690..803797, 803845..804310,804358..804447) /gene="Cbr-ubxn-4" /locus_tag="CBG_18145" /standard_name="CBG18145" /product="Protein CBR-UBXN-4" /note="C. briggsae CBR-UBXN-4 protein; contains similarity to Pfam domain PF00789 UBX domain contains similarity to Interpro domain IPR001012 (UBX)" /note="Predicted" /db_xref="GOA:A8XT43" /db_xref="InterPro:IPR001012" /db_xref="InterPro:IPR029071" /db_xref="UniProtKB/TrEMBL:A8XT43" /protein_id="CAP35647.1" /translation="MQWFPGDVTTAIQVSRKNLALLIVYITTDSEDGRIFDEFWTHID TSNLLCPVVGIKLVAGETAAAQFADIYPTPIVPAAYLIDQNGKPLEVITTLVGKTFDQ FRSKFDKATAQFINGFPKSENPVSQSNVNRLASAPAPVSVAIQPPNTSTSQEMTSELA EKVARAKALLEQKKLKDAEKKRESDKQMKEELTKAREAKQDRDDKALMEAAKQRKKEK METEKEKERILAQIKADREDSKKRFGKTSNSSNDASKADSKENSVIGKAVPSDRCRLQ VRLPDGFTFVEEFPSNDVLNSLVEIIRQKPFMSGTSFEIQQPYPRRVFSTDDYSKTFL ENQLTPSCALVVVQKSSGSSGLRPGSLSVTTPSIPIFTWLLYPFTAVWAVVCSMFGWN PDSTKSDSKKSENGSSSSAGQASRRGMPRSAEVRRRGNVAGLENPNDDDPEERASFNG NSTQFM" CDS join(804672..804816,804870..805041,805114..805549) /gene="Cbr-cutc-1" /locus_tag="CBG_18146" /standard_name="CBG18146" /product="Protein CBR-CUTC-1" /note="C. briggsae CBR-CUTC-1 protein; contains similarity to Pfam domain PF03932 CutC family contains similarity to Interpro domain IPR005627 (Copper homeostasis protein CutC)" /note="Predicted" /db_xref="GOA:A8XT44" /db_xref="InterPro:IPR005627" /db_xref="InterPro:IPR023648" /db_xref="InterPro:IPR036822" /db_xref="UniProtKB/TrEMBL:A8XT44" /protein_id="CAP35648.1" /translation="MADGNADRRIKLEICIDNLESAENAVAGGADRLEVCSSLPLGGL TPSVGFVSMLRYKYPDIPLYCMIRQRPGNFVYTEDEMTANVEDVEWLKKAGAAGFVFG ALTTVGTLDRDACEAIIETARPHPVTFHRAIDVAYDWRSCLEEAIEIGFKAVLTSGQE PSALDGVHIIREMQELYKNKIDIIAGCGVNSSNVANLVEWTKCHWYHASASVVKKNVP VNKVSMGKQDNQPMRVTSLDEVKMLKTTMGPA" CDS join(806722..806863,806912..807237,807632..807980, 808028..808157,808206..808428,808523..808834) /gene="Cbr-lap-1" /locus_tag="CBG_18147" /standard_name="CBG18147" /product="Protein CBR-LAP-1" /note="C. briggsae CBR-LAP-1 protein; contains similarity to Pfam domain PF00883 Cytosol aminopeptidase family, catalytic domain contains similarity to Interpro domains IPR000819 (Peptidase M17, leucyl aminopeptidase, C-terminal), IPR011356 (Peptidase M17)" /note="Predicted" /db_xref="GOA:A8XT45" /db_xref="InterPro:IPR000819" /db_xref="InterPro:IPR011356" /db_xref="InterPro:IPR041417" /db_xref="UniProtKB/TrEMBL:A8XT45" /protein_id="CAP35649.1" /translation="MAQILVRNGIQAVGEGLTSVVIVGKKSVLQAVSFEGRFQEVAQK FVGDSSSWTSMVSRINSSGRLPLHYELAHLIAVPDTASRGNTPTNSHALFRDMRSVSY PSDVQNVHVVLFAEYSDVLAHVAAIARTFCKFSMKTSATEARSLNVNIDVVCDQFTSQ DAHFLTDLSESVRETARLIDTPANILTTDALVEEAVKVGHAVGATVSVIRGEDLLTGG FGGIYHVGKAGPTPPAFVVLSHEVAGSTESIALVGKGVVYDTGGLQIKTKTGMPNMKR DMGGAAGMLETFSALVKNGFSQTLHVCLCIVENNVSPIANKPDDIIQMLSGKTVEINN TDAEGRLILADGVFYAKEILNATTIFDMATLTGAQAWLSGRMHGAAMTNDEELENAMV RAGKASGDLVAPMLFAPDLFYADLKSPIADMRNSNLGKMEGPPSAVAGLFIGAHINFG EGLRWVHLDIAAPAECGDRGTGYGPALFSSLLGKYTNVPILNQ" CDS complement(join(808995..809085,809136..809225, 809271..809371)) /gene="CBG18148" /locus_tag="CBG_18148" /standard_name="CBG18148" /product="Protein CBG18148" /note="contains similarity to Pfam domain PF10853 Protein of unknown function (DUF2650) contains similarity to Interpro domain IPR022559 (Protein of unknown function DUF2650)" /note="Predicted" /db_xref="GOA:A8XT46" /db_xref="InterPro:IPR022559" /db_xref="UniProtKB/TrEMBL:A8XT46" /protein_id="CAP35650.1" /translation="MSYYGGYGSCNGGILGSVLGMAGGYGGGGYGGYGRCGADNIFYR WRCCDYSPYECCIQLETWVVVFLVIFIIGFFVCLCACLAGCVWSARNRQ" CDS join(814703..814738,814785..815172,815218..815382, 815443..815616,815663..815712) /gene="CBG18149" /locus_tag="CBG_18149" /standard_name="CBG18149" /product="Protein CBG18149" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XT47" /protein_id="CAP35651.1" /translation="MAPSNSKNNKEDIASDGSSAFSTGTSLSSYDGGSESSSYSTASS RSPSHLSRRDSFYSASPSTNSSLGYRRHRSPESRSHSSHRSGSSVASDVSRKSILKNR MPTRRRSVSRKSKMSPKRKSTIRPVGNFAMIKNPAIKNQVRGFLNSYSQSSDFEAFSL SVDGIPFVALSLLSADEALLDRFKPQPPTPMKKHVPGVNNPRKRLQPHRSTSSSSSKQ VRFTDEGASTSAPKKSKKSLSNEEIHELGQKVSDAMLETDRQYDDLWKDRKD" CDS join(816246..816290,816346..816528,816704..816802) /gene="CBG25981" /locus_tag="CBG_25981" /standard_name="CBG25981" /product="Protein CBG25981" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKT1" /protein_id="CAS00511.1" /translation="MGLVASVVAPTVSNTISSRILLGPETPAKDPKSAENVSKFDNLT SPISGELGPSPGNKPSPNPLAGAPMIRPPRDTISKAPDNSVYDTLSMTPEMDWNKKQT IKSSNK" assembly_gap 817218..817227 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS 818077..818430 /gene="CBG18151" /locus_tag="CBG_18151" /standard_name="CBG18151" /product="Protein CBG18151" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XT48" /protein_id="CAP35652.1" /translation="MYTYHLNKLAQKFAEIRRQDMANAQRKLAQSRDCIAHIENQKMV LEQKSQEEVNELFSAAIGSTGAPKKTSTKPDYSKYRIVKRSKSSKSSTPTSSSSSSSS SSPTYSTLFILFHDF" CDS join(820065..820154,823305..823422,823780..823853) /gene="CBG18152" /locus_tag="CBG_18152" /standard_name="CBG18152" /product="Protein CBG18152" /note="Predicted" /db_xref="GOA:A8XT49" /db_xref="UniProtKB/TrEMBL:A8XT49" /protein_id="CAP35653.1" /translation="MNIQKTTNFEALQPAGAEYELTDIEIQQLKDHNQKRVKRVVGFV AIAMTLLSLALVAFSLALGRKIDLMVEQKVEERMEIYTAHGINLTETRS" CDS join(824297..824551,824598..824847,824894..825028, 825074..825261) /gene="CBG18153" /locus_tag="CBG_18153" /standard_name="CBG18153" /product="Protein CBG18153" /note="Predicted" /db_xref="GOA:A8XT50" /db_xref="UniProtKB/TrEMBL:A8XT50" /protein_id="CAP35654.1" /translation="MNWIAWSFGLFLIAIILIVSFYMIVMYLKSQRQKNQKHDEDIKI EEEKMYRDRLAASNSQKSSGVSSMTGSVREIDPKSDKSSENTEKTETSSKVEGYLVKK NDETKAPAAVIVLEKEPKDVAAPKKTSKEPSTEELSKKSLTDLKPIGAAKVESPKTAN GEVSVEIPKPPSSLPTEKCIFSAEKVPESSLGSDYSTYVISSQRSEMNNYNMLEAGRT PPTFSNSENPLQRTPSIESFVPRSTMTSTIVGTPPTVIPAKQNSETLVSMTTPPIKK" CDS complement(825812..826423) /gene="CBG18154" /locus_tag="CBG_18154" /standard_name="CBG18154" /product="Protein CBG18154" /note="contains similarity to Pfam domain PF00320 GATA zinc finger contains similarity to Interpro domain IPR000679 (Zinc finger, GATA-type)" /note="Predicted" /db_xref="GOA:A8XT51" /db_xref="InterPro:IPR000679" /db_xref="InterPro:IPR013088" /db_xref="UniProtKB/TrEMBL:A8XT51" /protein_id="CAP35655.1" /translation="MDFQFPTVSTASFLDTSSVPSTSSWDSGVVNRSTTYLDTQSINY SDYSYSSNYYANYYASFLQCLNSNTSTATVVPSPTATSQTSMDLSWNGFQNNFNVSSS SISSSPSSSSTGFTPFSANSPTMPTPASTLSPTGSTTPRNAKTYTKQCSNCFITESCQ WRNVTSREGMLCNACFTYRRKYKKNRPTAAIEKYRCQKREKQL" CDS 827760..828371 /gene="CBG18155" /locus_tag="CBG_18155" /standard_name="CBG18155" /product="Protein CBG18155" /note="contains similarity to Pfam domain PF00320 GATA zinc finger contains similarity to Interpro domain IPR000679 (Zinc finger, GATA-type)" /note="Predicted" /db_xref="GOA:A8XT52" /db_xref="InterPro:IPR000679" /db_xref="InterPro:IPR013088" /db_xref="UniProtKB/TrEMBL:A8XT52" /protein_id="CAP35656.1" /translation="MNFQFPTFSTASFLDTSSVPSTSSWDSGVVNRSTTYLDTQSTNY SDYSYYSNYYANYYASFLQCLNSNTSTATVVPSPTATSQTSMDLSWNGFQNNFNVSSS SISSSPSSSSTGFTPFSANSPTMPTPAFTLSPTGSTTPRIAKTYTKQCSNCFITESCQ WRNVTSREGMLCNACFTYRRKYKKNRPTAAIEKYRCQKREKQL" CDS complement(join(828751..828951,829018..829146, 829174..829611,829656..829884,829937..830023, 831167..831302,831365..831612,831665..831859, 831902..832608,832661..833296,833349..833592, 833646..833898,833942..834062)) /gene="CBG18156" /locus_tag="CBG_18156" /standard_name="CBG18156" /product="Protein CBG18156" /note="contains similarity to Pfam domains PF00521 (DNA gyrase/topoisomerase IV, subunit A) (2), PF02518 (Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase) , PF00204 (DNA gyrase B) contains similarity to Interpro domains IPR018522 (DNA topoisomerase, type IIA, conserved site), IPR002205 (DNA topoisomerase, type IIA, subunit A/C-terminal), IPR013506 (DNA topoisomerase, type IIA, subunit B, domain 2), IPR001241 (DNA topoisomerase, type IIA), IPR003594 (ATPase-like, ATP-binding domain), IPR001154 (DNA topoisomerase II, eukaryotic-type)" /note="Predicted" /db_xref="GOA:A8XT54" /db_xref="InterPro:IPR001241" /db_xref="InterPro:IPR002205" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR006171" /db_xref="InterPro:IPR013506" /db_xref="InterPro:IPR013757" /db_xref="InterPro:IPR013758" /db_xref="InterPro:IPR013759" /db_xref="InterPro:IPR013760" /db_xref="InterPro:IPR014721" /db_xref="InterPro:IPR018522" /db_xref="InterPro:IPR020568" /db_xref="InterPro:IPR031660" /db_xref="InterPro:IPR036890" /db_xref="UniProtKB/TrEMBL:A8XT54" /protein_id="CAP35657.2" /translation="MFRIRVLRHVVRFASSSSTVASKRLTRHFCSQTLSTSLSSEAAA KYEKKSPTEHVLLRPDTYIGGVAMRESQFVWIRNSETRRMFTKEVSYPPGLLKIFDEI LVNAADNKSRDPSMNRLEVWLDRETSRIAVWNNGSALPVEIHPTEGVYVPTLVFGSLF TSSNYDDNEIRTVGGRNGYGAKLCNIFSDEFVVEAVDSRTKRKFKQRWYHNMREFDEA VIEDLTNQQLSDYTKVEFVPDLKRFHIDKLSEDIIDLIGKRVFEVAATLPSDVQVFFN GQKCDVDGFEDYVRMFNDSNPSSFLFLHPTSRWHVGVAKRNTFSGEGIVTLPKVVSFV NNINTEKGGSHVDYVMDKIVNVMKPLVDSRLGDPSKSVKPATIKNNISLFINCLIENP SFESQTKETVTTKPKQFGSSFDCDSEKISKWAETSGLLDEIVDEVLNTKKKKISSKRA NSSSVRDIVKLEDAEWAGVPGKSEKCTLILTEGDSAKALALAGLEILGRQTYGVFPLK GKLVNVSNLDDIRASKNEEIGKIVRILGLNFNEPTPSKESIRYGRLLILTDQDEDGSH IKGLVINFIHKFWPSLIQSGEFIKSFRTPLLKAKKGNEVVPFFSLNEYRKWAETIEGK WKVKYYKGLGTSTSNEAREYFRNLDHHTVNFNYAGSSDDDAIRMAFDREKSDERKRWI RGSDEVSTTEDVEKTELNYEEFVNSQLMQFGMADLKRSIPSLIDGLKPSQRKILWTLL KMDETTEMKVSQLAGAVAHRQSYHHGEESLVRTIVRMGQTFCGASNMPLLQPIGQFGT RHEVRVIMITPPHFLRFSEKRNNLEKNGKCHSIQHPKKPICPQNQVPVNPTTRLLFPI ADDDLLEKKVEEGITVEPNTLCPIIPLILVNGTEGIGTGWSTKVANRNPVDVIDMIRR KIDLSSLVVNEIPPFYEDYKGKIEIVTPTKFISTGKIKISRPERKNASTFSVEISELP IGVWTSKYKEKLSNILEKLPITEFSERHTEKQVNFRLIFDRKKAARFLQKSNSDLLNY FKLRTSITENRVLFDRNGQLKEFGNVSEIANEFFEIRKDLYQKRLEIQKRECEAKLKY VNNQVHLYYYMNFIELVTNGTFELKSMDRESLELKLEEIGFEVDSMKTENSKKSNYGY LLEMPLSRLTLDEMNRLKERKSRRNLELKAAESADWKSTWHSELDKLEESIKKTRKEY LAS" CDS complement(join(834571..834787,834832..835530, 835576..836456,836518..836912,836933..837136, 837189..837685,837734..838085,838135..838444, 838495..838665,838717..838800)) /gene="Cbr-met-2" /locus_tag="CBG_18157" /standard_name="CBG18157" /product="Protein CBR-MET-2" /note="C. briggsae CBR-MET-2 protein; contains similarity to Pfam domains PF05033 (Pre-SET motif) , PF00856 (SET domain) , PF01429 (Methyl-CpG binding domain) contains similarity to Interpro domains IPR001214 (SET domain), IPR003606 (Pre-SET zinc-binding sub-group), IPR001739 (Methyl-CpG DNA binding), IPR007728 (Pre-SET domain)" /note="Predicted" /db_xref="GOA:A8XT55" /db_xref="InterPro:IPR001214" /db_xref="InterPro:IPR001739" /db_xref="InterPro:IPR003616" /db_xref="InterPro:IPR007728" /db_xref="InterPro:IPR016177" /db_xref="UniProtKB/TrEMBL:A8XT55" /protein_id="CAP35658.2" /translation="MDQPIDLDSDEQLSNDTSDGSAIVREPDTVDLTMDDDDDVENID DEIVSDHESDDENPIEIVNAFMNIVQNGNHVANGEVEILDDVELIVEGTNQKTEEGMI EEHKTISNRLLSWFKRLKPEHFKDFGIGGNDYLTEYVNDELLFPLEKCKDAAKQFKES GSLTGLVEKCKFENEDSLIAGICMGILDDNNSLDVDFSVLAEDRFDNWSIKQLELYFN KVAAEGIDASPLKFMQLTLSSPANAILLLTYYFMLTNKFTSRIEEQESSENSLEELDD REIYQRIVDASAHHWQHNKSSVKRDAQINRDLNEFFHEIEATTVEMEEQFENTVGQRS EIISLIREKVPRLETPSELNLQIMTKEARDELVCSRAAMELLKNQTMNAVREARKVYQ GKTLLEKHHALKPGDFCMARMLNTDTADLKHAIVEQILSAEKYRVKFLHNNETADRHV RDLALTNHGLCSPLYNGFGDVGLRVAVCCPLNTGQYSKTWIWKTGTTASRRSGHRGDF LVFLDDGSDVYVTAPCKAGDPGYSTVVAKKEDVLTRMKAARIAVMVGQPFGESGRIER QLVHRWVRERHRSHFIKTYMKDFPEFQVLKMPIGFRTTMTKLPPDNKEKHLITVVGLD RVFAIVRYQTPSGAPGYNCFEYPCKDSTHYHMDEHVYRGSSRITQVSSMREMMTQVNN NLSKRKKDQLASQFELSESVKTMPQRSTNQALQTSVPSIRTNANKENQVKQKALTVAE IEKKKKNQLLFHKTVVPTPNISKEKRAPHSQCGPDCLQKLDANPYDARFHTNSPLHTP LLCGWKRLKYTMHSGKKRASVKKVIIYRAPCGKPLEKTSEIADYLRSTRSQLTIDCFS FAPDVDTETYITVDQKYVRMSDISVGLEGIPIPLVNSVDSDPNPVLEYCKRRFPYNAS VDVSSISQDFCSGCSCDGDCSNSLTCECQKLSAEASDKLPKHLKFEDNKRLASTYSQR VLTNKVITGIYECNDKCSCKRDACHNRVVQNNIKYPVHVCELTLELFHCLLHSKSVYF QIFKTAQSGWGLRALTDIPIGAFVCTYVGALLTNDLAEDQHGSDQYFADLDLKDGVEM AKGDEDHETDLGLGDEVSDGDFTDEDDNDSDDDDNNDSTVQHRVKIGNRKHETRRNSQ EDKLQHTEINGENGKKEEETEKKEEPVFNWDDYFDKFALYVVDAKNRGNLGRFLNHSC APNCVVQHVLYDTHDLRLPWVAFFTIKTIKAGDELTWDYQYTELNSETSRLSCNCGSE VCRHRLL" CDS complement(join(839348..839857,839902..840283, 840335..841101,841152..841401,841451..841575, 841629..841835)) /gene="CBG18158" /locus_tag="CBG_18158" /standard_name="CBG18158" /product="Protein CBG18158" /note="contains similarity to Pfam domain PF04791 LMBR1-like membrane protein contains similarity to Interpro domains IPR006876 (LMBR1-like membrane protein), IPR008075 (Lipocalin-1 receptor)" /note="Predicted" /db_xref="GOA:A8XT56" /db_xref="InterPro:IPR006876" /db_xref="InterPro:IPR008075" /db_xref="UniProtKB/TrEMBL:A8XT56" /protein_id="CAP35659.2" /translation="MAQYALEAGVSWLATSVSVVASGTWQFAKWSHRYIMQEAEELEE EAEESHFQQMIDKEKAFHNYVRQQIICMWLFMLLYLFAYWLISRLKRKTEREALYAGE EDYFVYRVSVWISSTATATSIGSLTLLPFSVIGVEMLQLYDGNYYLQWLSYSLIGALW NYVFVLSNVSLFVLLPFSYFFIESQGFSSSNLGNCTTQRIYEAMAISFLFAFVLLCLA EIVLTILDYPVSFLSITSVNLPLIYSCVSFIGAVLLLISTPYGFAKMFSLAREFLVVD GEVVEEELASSPNEVTPEPSENAFMINSKPSDSEETLSAPISDEVVTDVVEEFRKDSD SGIESGSTEEMRLNTDDEDEIEIINPEVDPSECGDVGNTTPTKPKRRRWRHDYASSPV VRKWEEPKKLPNPNFDYRNFNDYVRAARRQRSSFSESDDFWVGSPTRNTFSNNYFSSR FSRCEHGSEMCLNPSTSLAVDPFASGDSHEATSSEASTSNQISPNRLSKSEEAIWKPV IHTVKSSKLYKRAIEKQGRLLKLFMRLRYPVAIAILLALTTCSLIMVAINTLKLLFGY RSLPVYAQYIEVHTRHSFGLFGACIETLIIIYVMLTSFVGLYSLPVLRSLRPVRKDTP MPTIIINSSIVLVVASALPVAVNTIGMTTFDLLGSQSSLQWLSSFRVVVAYNTMFVVL SVAFLFNQLTASMRRQIWKWYREKGFFSKLFRFFFRICNLRCGRCTDDSDDTMVILGG NDKKNN" CDS complement(join(845168..845425,845472..845573, 845622..846206,847595..847993,848042..848260, 848304..848432,848481..848528)) /gene="CBG18159" /locus_tag="CBG_18159" /standard_name="CBG18159" /product="Protein CBG18159" /note="contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR000980 (SH2 motif), IPR008266 (Tyrosine-protein kinase, active site), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8XT57" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR000980" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR008266" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR020635" /db_xref="InterPro:IPR036860" /db_xref="UniProtKB/TrEMBL:A8XT57" /protein_id="CAP35660.2" /translation="MHQNSALKIEFIRKGESPSDLEFSDNVGQVNSDQISDCNSTGSI PDNQSGISDMEKSVDDYISNILKHHLWYHGMMFGGTVEKLLKWEHSYLVRRAIQRSSM KKTLCISVKIDGKVLNFQLTWNEDGWGSTKLVAKFPKMAQKRYAHIYQLLDAWSLSVN AITPVPRNRIVLHHSSITLGNKLGSGAFGEVYRAKYLPNGASESIEVAVKRAIGDAQR STIQEFCHEAQVMGVLQHVNIVCLYGIASLEQPVMLVMELVTGGDLRLCREMLLNTFR DAHALNFEGAEINTHFRYMNNPIRFPNSLKFQKHLQTTHNISHRQLITFAADIASGMK HMAQRRVIHRDLAARNCLITNSLKIKISDFGLSHSGQEVIVKKLKKAPIRWLAPETLQ KGIFNEKTDVWSYGVLLTEIINRCATDPLAPRTLKEVQEWIKESDHPHRIKNGEPKEL ADLVDICCDKNSITRPNFQTVRRRIRAILETANMLGPISGTLEMKKSEERKSSTSTDR KVSNTALMRKKSRDGKVKDRSTERKGGTQRRIVSHRRREIGPMKLPIGMSTPEKVSPQ NMTSPATPPIPKT" assembly_gap 846330..847436 /estimated_length=1107 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(850039..850115,850286..850373,850421..850508, 850557..850654,850696..850781,850835..850915, 851235..851337,851394..851604,854241..854309, 854358..854448,854494..854562,854788..854988, 855036..855156,855212..855530,855580..855701, 855749..855862) /gene="CBG18160" /locus_tag="CBG_18160" /standard_name="CBG18160" /product="Protein CBG18160" /note="Predicted" /db_xref="InterPro:IPR036249" /db_xref="InterPro:IPR040090" /db_xref="UniProtKB/TrEMBL:A8XT58" /protein_id="CAP35661.1" /translation="MTHFSGGPSFISTLICVLGILLPSIECHCPHMMGLKAPGPPSGP SPPGKFPDGDEGWDYDETAAPGIVPEPHFIQSTYIYRSPNVQEKTFSSRVVTVLKDIR SRLEKSARLTLENENIECSSPTDHYRCQEYPSTGTWNYLIVEDQQKGAATYTFDRKYN EKNDGTIEMALLDAFSRHSPSSLIAFASPEAEKEVGYIRALTVQEMDSLSGKNRHRQI SMEKFGSNELNLLEPALLEVRTGSGLKLTSDSLRRIDSSKEFDKLLDEYKNVFILFWT SNRMVSLHTFNLWSRVGDKTKVDDDTLLAHVPCHESSEFCQGLNAEDYHTVVSYKNGQ NTGKTENIGDEEFYENWIELSLLGPLQKLPNESKFTDFKKGIVNGKKRPSVTIGVFPS DQDTSFQHFQIATEKLAGKYYTAYFINENSKPAITTYRHSEKQKRTDYSGKFDPASLM EFITKSSIPSVIDISNGFTTDVLFHQKRPILILIGRDSEPFSKLSARQDARKNYIFTK IDGENKNIQKTKKALGIDNDEPVIVFLNKDRVHLIPTSKPKCPDHLQKLLQVVSSSEA DNVLSTKNPHPLRYLQVENVNKQFGFEETIVLPDHTLFLDSDPFARHPPISESGGTGG CPFMQGGGATAASDSIPHSEL" CDS complement(join(851758..852262,852310..852471, 852521..853067,853350..853602)) /gene="CBG18161" /locus_tag="CBG_18161" /standard_name="CBG18161" /product="Protein CBG18161" /note="Predicted" /db_xref="GOA:A8XT59" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR036236" /db_xref="UniProtKB/TrEMBL:A8XT59" /protein_id="CAP35662.1" /translation="MDSSNQRKRQLEDDDPETDTSKKPMTVKDEPTDSFEKGDFPATT SATISATPILDSIIATPPVPPPPKNASMSSNPPISYLTLFAAFRQFLNGYMQAGGDIN YANALATCTAALPMPPNPLKPMIALVPLTVPSAPTSLVSSEDSAAQKPSPPPKKAGDS EPGTSETSATSATSATMPTLSAALGEDKEKQAEKSSDAVPATATIPDIKPHIFPLLPP FPMIPMLPAPKPQVPESSTEIQRLREAAFGRYKNVLCVICNEWICSRNRKNHIEAHLN YRPYKCSACSYARRREIFVIQHMKTQHKGQKAEMQSSVDLHIAMEVDRLADECVARTR KLIESMQEKKDGDFGENKDFDEKALELMLKEEKEKKVVRIESVAAIRPKVANYHRKQR TQVLKKIYDTDAAKQAELKIVKEEEDGEEPAPSIKLDDGFEINLDDLMKMVEAAGGSQ ESQGSESNKDESSQSAPTTQNDAEEKESTPIEPTPIES" CDS complement(join(856245..856323,856373..856747, 856794..857173,857480..858100,858158..858283, 858374..858845,858898..859037,859087..859254, 859303..859428)) /gene="Cbr-rfp-1" /locus_tag="CBG_18162" /standard_name="CBG18162" /product="Protein CBR-RFP-1" /note="C. briggsae CBR-RFP-1 protein; contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR017907 (Zinc finger, RING-type, conserved site), IPR018957 (Zinc finger, C3HC4 RING-type)" /note="Predicted" /db_xref="GOA:Q60YN5" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR013956" /db_xref="InterPro:IPR017907" /db_xref="UniProtKB/Swiss-Prot:Q60YN5" /protein_id="CAP35663.3" /translation="MMKRNNEGIGGEGVANSPPDDTQQKRRRIQFEAVKMPAVQSVTE LRSRTVAIQAAKLRQTVLIKNKRISDLERENERAKRRQLTDESNFLKVYNLFSELEKF IWAQTKDEFGEVKMTPSAPAGTDVQGMTSEQYHSFVDTAKGNLRIAFNSYAKARHDRT TETANFIARLKTLMADPKLNINDIHKELAAKTASLLAQIDKLQAEAHRVQSENHNLER KRRHMVDKNTLLESRIQEMEKLLEEAHFETEKQMRLACKYEARLILEHEAASGNATAS SSATLNQSEKKMGSPGSPPSESTSREIEALRADRDEQAAIAARRLQELEDTNRKLQSM AQDISKLKMETQSSVPSDVITNSEEYRNLKKYYSLAIKEHERICKDLEDVTVERDQLR SVKENREKMMSEEHQKTIKEIQHQSEIHNTFYRVSHDSEVLRAEFETVKEEYNKTVKQ SEWDEMKATVNTLRSLNKTMKSQMQRMKDREKASQKEHSAVKTELKTLKDQLEKSVLV PLEDSGNTSTEDANKIRAEYESLKREIRRIGAMDKQEKQRQLDREIQRHIADKVTELE TLRKTNEALTNDEQTLSDELEVVCLTIEEEQERNAQLFMEKRDQEDRNLKMMNERMIQ NQVQSRMREKLECLESKAQTDAQIAKMHEFEKKASDEVLNKLTENLQFKTSEVTRLSN MMEVHRKQTQELGFARDENQVKVDRCEAQLKQYQDLYGSKSREVEEAKFKRQRAEEEL ELVRVKYERAKRNDSAQTGDQVLQEANRQMKETLTCPSCKTRPKDCIMLKCYHLFCET CIKTMYDTRQRKCPKCNSNFGANDFHRIFI" CDS join(859747..859869,859912..860059,860107..860402, 860451..860540,860584..860682,860774..860950) /gene="CBG25982" /locus_tag="CBG_25982" /standard_name="CBG25982" /product="Protein CBG25982" /note="contains similarity to Pfam domain PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) contains similarity to Interpro domain IPR000504 (RNA recognition motif domain)" /note="Predicted" /db_xref="GOA:B6IKT2" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR035979" /db_xref="UniProtKB/TrEMBL:B6IKT2" /protein_id="CAS00512.1" /translation="MVKRIFVQGLSSDTTEVIVKKYFEQFGKLYECVVPTPPRYLIVD SGPDNEDIETRSAIRYEPVQNSVTLDDELHVEQYNIEKHGSFESYMKRVGEGEGFIEE KRRTCAGYAYVTFLDMDGYSKCMKSDIHEINRVKCTIELAKDEQDERVKVESKRLFVS FFPLERLTSKELKTFFGSHGKITDVEFVSDSEGPLHFCIITFADHSTVDLLLKKSIYI RDVLIFTRRAVLKESIKMAEHKLKEQARQQRIHLPANHTAYPTPSRPVTFLPSTSAPD YWNDPSAGAGYAPLHPQPPEADPSSQYGYGPRKW" CDS complement(join(861283..861576,862106..862204)) /gene="CBG25983" /locus_tag="CBG_25983" /standard_name="CBG25983" /product="Protein CBG25983" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKT3" /protein_id="CAS00513.1" /translation="MKLQLFIFRKNFSHIAYGELRLVSITIWWKTRGERLKPNMVIKL TMSNDRYDKIRQMVEDGGEAIDSEAKKVDKGLKTPQVGAILFSRYSLWDLEDGRCKSF SFHWWRVKREKRHTHNIHSFAGKETRGL" CDS join(862569..862631,862657..862752,862907..863068, 864121..864418,864465..864694,864816..866141, 866194..866550) /gene="Cbr-unc-116" /locus_tag="CBG_18164" /standard_name="CBG18164" /product="Protein CBR-UNC-116" /note="C. briggsae CBR-UNC-116 protein; contains similarity to Pfam domain PF00225 Kinesin motor domain contains similarity to Interpro domains IPR002332 (Nitrogen regulatory protein P-II, urydylation site), IPR001752 (Kinesin, motor domain), IPR019821 (Kinesin, motor region, conserved site)" /note="Predicted" /db_xref="GOA:A8XT61" /db_xref="InterPro:IPR001752" /db_xref="InterPro:IPR019821" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR027640" /db_xref="InterPro:IPR036961" /db_xref="UniProtKB/TrEMBL:A8XT61" /protein_id="CAP35664.2" /translation="MEPRTDGAECGVQVTYFIFISVFCRIRPLNKTEEKNADRFLPKF PSEDSISLGGKVFVFDKVFKPNTTQEQVYKGAAYHIVQDVLSGYNGTVFAYGQTSSGK THTMEGVIGDGNLSGIIPRIVADIFNHIYNMDENLQFHIKVSYYEIYNEKIRDLLDPE KVNLSIHEDKNRVPYVKGATERFVGGPDEVLQAIEDGKSNRMVAVTNMNEHSSRSHSV FLITVKQEHQTTKKQLTGKLYLVDLAGSEKVSKTGAQGAVLEEAKNINKSLTALGIVI SALAEGTKSHVPYRDSKLTRILQESLGGNSRTTVIICASPSHFNEAETKSTLLFGQRA KTIKNVVQINEELTAEEWKRRYEKEKEKVTRLSALLQAAALELSRWRVGESVSEMEWV NLSETAQMAVSEVSGGSTPLMERSIAPAPPMLTSTTGPITDEEKKKYEEERVKLYQQL DEKDDEIQKVSQELEKLRQQVLLQEEALGTMRENEELIREENNRFQKEAEDKQQEGKE MMTALEEIAVNLDVRQAECEKLKRELEVVQEDNQSLEDRMNQATSLLNAHLDECGPKI RHFKEGIYNVIREFNIADISTQNDQLPDHDLLNHVRIGVSKLFSEYSAAKETSTAAEH DAEAKLAADVARVESGQDAGRMKQLLVKDQAAKEIKPLTDRVNMELTTLKNLKKEFMR VLITRCQANQDIEGEDSLSGPAQKQRIQFLENNLDKLTKVHKQLVRDNADLRVELPKM EARLRGREDRIKMLETALRDSKQRSQAERKKYQQEVERIKEAVRQRNMRRMNAPQIVK PIRPGQVYTSPSAGMSQGANNGSNGVFNGQQPSPAPPFNNQFPSK" CDS complement(join(869276..869605,869658..869819)) /gene="CBG18166" /locus_tag="CBG_18166" /standard_name="CBG18166" /product="Protein CBG18166" /note="contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domain IPR000535 (Major sperm protein)" /note="Predicted" /db_xref="GOA:A8XT62" /db_xref="InterPro:IPR000535" /db_xref="InterPro:IPR008962" /db_xref="InterPro:IPR013783" /db_xref="UniProtKB/TrEMBL:A8XT62" /protein_id="CAP35665.1" /translation="MVERNSQNVLAGGTSLGAAVAPPQAHTNFVDAGATSLMNKPGEP PFRLALNTNKIEFKCTEDRKPSSVFVKLFNPTNETVSFKVRCTSADIFRVQPPLGFVK SNETVSIVIWYQNQDKKDAMSKCHYFAFYHTHSDGRTARELWANSKAEGVRRLPASFI SAK" CDS complement(join(872278..872373,873009..873219, 873263..873318)) /gene="CBG25984" /locus_tag="CBG_25984" /standard_name="CBG25984" /product="Protein CBG25984" /note="Predicted" /db_xref="GOA:B6IKT4" /db_xref="InterPro:IPR009545" /db_xref="UniProtKB/TrEMBL:B6IKT4" /protein_id="CAS00514.1" /translation="MYFSFLQFAFTFLIYLYTVFVVYRNGYSRSVRKWFKLMTNNSGT IVIFTVIALILMGVNFSKACDSTDLFLGTTFEIIILIFVPVHWRVLGYSAWLSCAAAV LSLGNFILAMVIAENECN" CDS join(875565..875665,875717..875801,875954..876241, 876290..876502) /gene="CBG18169" /locus_tag="CBG_18169" /standard_name="CBG18169" /product="Protein CBG18169" /note="contains similarity to Pfam domain PF09808 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 contains similarity to Interpro domain IPR019188 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43)" /note="Predicted" /db_xref="GOA:A8XT63" /db_xref="InterPro:IPR019188" /db_xref="UniProtKB/TrEMBL:A8XT63" /protein_id="CAP35666.1" /translation="MPKGGATSLIPVSAGLRTDLDTFLKSFLQLKTIRFTDYKKLFEH LRMINLYNGRSESAEIIEFNEQLLIHCLPYIEEKVCPGIPRSLEERLFGLYSLYTFFY TQPVDHVVKIRIDPDTCLSFRKLTDLVLRENILEAYMICLKLHEDKAFRHVAFIQTFD PSLFKRFGAADQDNEHLVYTNHLNPYSRIKALTESDLFQKLRIISQEYNRLKIEAGLN FGNQSPNLDF" CDS complement(join(876612..876791,876839..877004, 877896..877987,878049..878102,878196..878289, 878448..878509)) /gene="CBG25985" /locus_tag="CBG_25985" /standard_name="CBG25985" /product="Protein CBG25985" /note="contains similarity to Pfam domain PF06653 Tight junction protein, Claudin-like contains similarity to Interpro domain IPR009545 (Protein of unknown function DUF1164)" /note="Predicted" /db_xref="GOA:B6IKT5" /db_xref="InterPro:IPR009545" /db_xref="UniProtKB/TrEMBL:B6IKT5" /protein_id="CAS00515.1" /translation="MIILRTNTLQRSDEIPFLLIGEIKTLGVLISLCFLFHTYGLFSD CWIESESFILHGWYDEHGELYFIRFFDGIRPDNMVCIMMYVSLALLLVVILSYCLIVN QIRKNYTLVRTRRLLFGISLGTILASGITSIAFYIFTGEVKRENVLQRPSVENYLGYS AKSSLISAGLCVVICGFSIKLALQRCRLDDDYLNLNDAEEDSVEIPTKNTIQQKK" CDS join(879587..879667,879820..879964,882231..882914, 882967..883226) /gene="CBG18170" /locus_tag="CBG_18170" /standard_name="CBG18170" /product="Protein CBG18170" /note="contains similarity to Pfam domain PF00104 Ligand-binding domain of nuclear hormone receptor contains similarity to Interpro domain IPR000536 (Nuclear hormone receptor, ligand-binding, core)" /note="Predicted" /db_xref="GOA:A8XT64" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR035500" /db_xref="UniProtKB/TrEMBL:A8XT64" /protein_id="CAP35667.1" /translation="MVWRVVCSDVLDICTVHLHDCSLWTYQISTNLAAIENSLKVVYG NKEVLKLDLGYSAYLSLSSSILLIITVTAFHCLLLQCLQNVFPSSHHIQKFFDQCENG DNCYKNPDEIANYDCRICRFQQCLRAEMIQKLDKLELSDTIENLCRMEMEKWNLFVNF RAPDNITFEDVTDSTETQFTKKSPITKNTYHDWEFINHVVTIDFIKKLDFVKLLTSSD SKVFLKSCYLNVCIVALAVQSYLSKLDNITYPEGCPVFPDEMNITTSKCPKVENRIKC RVIGKLRELNITKEEFLLLNIIFICNPDVPNMSETGRLLLNCYQRMYGSLLLKYCQVT YQKHAPTRYTDLLSICNVISKTRQDINSVAILFQIYQPAMEWKQMIRGAIDYHSK" CDS complement(880398..880454) /gene="CBG25986" /locus_tag="CBG_25986" /standard_name="CBG25986" /product="Protein CBG25986" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IKT6" /protein_id="CAS00516.1" /translation="MMKRLIEVNNNNKRDIIY" CDS complement(join(886906..887172,888290..888714, 888892..888970,889016..889078)) /gene="CBG18172" /locus_tag="CBG_18172" /standard_name="CBG18172" /product="Protein CBG18172" /note="contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)" /note="Predicted" /db_xref="GOA:A8XT65" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR013088" /db_xref="InterPro:IPR035500" /db_xref="UniProtKB/TrEMBL:A8XT65" /protein_id="CAP35668.2" /translation="MMTPLEMCLICQRPANSLNYGVLSCDACKIFFRRIIFGKPVKFC ANIGNPTVEELARSFGPIQFLPKLENRQPDSIQWGNLAALTTIDYMKKFNFMGVLDVE DRIVLIKNSFTDFDMLSNARRSFDLKKAESAFPDGSDIFVKIDHDICNNLENKIRCRL IGRFCDLKIAAEEFLILTCIFFCNPGEFHYLFSAHPNLSLSGRKILNTYQKIYTSCLL QYSFLNYQQNAPSRLTDLFSLYHSVKKAHEEIQTHFFFCKTKMPNLPFKDSLHTNLDF F" assembly_gap 887705..887714 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(889577..889753,889802..889900, 889939..890250,890298..890444,890490..890667, 890719..891129,891177..892152,892708..892876)) /gene="Cbr-zyg-8" /locus_tag="CBG_18173" /standard_name="CBG18173" /product="Protein CBR-ZYG-8" /note="C. briggsae CBR-ZYG-8 protein; contains similarity to Pfam domains PF03607 (Doublecortin) (2), PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR020636 (Calcium/calmodulin-dependent/calcium- dependent protein kinase), IPR003533 (Doublecortin domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XT66" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR003533" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR036572" /db_xref="UniProtKB/TrEMBL:A8XT66" /protein_id="CAP35669.2" /translation="MPQTSTWEIDERSSASGHRSGESGTNGMMNGANTLPRVTKRLST SGKTSNIPRFKRPHPPHSTRPHSAIISSSPGIYRKNSPSSSAPSTSSNRRLSQLPTHH VHSHIHQPNHTLHHTSVISEELTTPRASTFNLNQNQNVFATTTTSFGSMPNSGTNTPE ASMTSSVCAMETDGAVTGNSAEELAESRDMVSEMQKRCRIGPSGYPHLVKAKRLRFYR NGDQYFKGIPYALQCDRVKSMQPLMEELMKVIFKKYICQFIITLFQTVICDSTALPHG IRHIFTMDGTQRITSVDQFEDGGGYVCSSTDVFKPVDYSRAAEPSWRLTLANRYNRHL ETKKLALNVVEPANENTDFVIPKIIKVIRNGVKPRRISRHLLNKKTARSFDQVLRDLT LIVKLDAGAIRKLFTLSGRPVLTLQDFFREDDVFVAYGGNDKMAADDLLVASEEHKCV GASTSSKIRRTSRRSAMPNRNESLRHDRSGSVIPDQDQQRLPPDLDEKFQLVRLIGDG NTAVVYEVVDKINHDRRAMKVIARENVIGKEHLIEMELSILQKIDNTFIVQLYDHWFV DDSYFLSLELIEMGDLFEHLRRVRRVPERDAVRMMTCLGQALEYIHDLGIVHRDVKLE NLLIVKDEYGELGVKLADFGLACEMPEGNGVLTTICGTPTYVAPEVLNKTGYGCRVDI WAAGVILYAILVGFPPFQSSDGSEQDLFSAIISGEFSFPSPSWDDVSNSVSWSVRHLI MCLIHTDPFHRYSANELLSDEWMVNLGDVDPEYEEWAHLFVQSKMHVGEEQETPYEYY TSRRTSMDELSESAGVEFSFSREG" assembly_gap 894553..894562 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(895082..895166,895253..895580,895628..895958, 896126..896346,896395..896454,896504..896606, 896839..896859) /gene="Cbr-arx-3" /locus_tag="CBG_18174" /standard_name="CBG18174" /product="Protein CBR-ARX-3" /note="C. briggsae CBR-ARX-3 protein; contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR017383 (Actin-related protein 2/3 complex, subunit 1), IPR001680 (WD40 repeat)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XT67" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017383" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:A8XT67" /protein_id="CAP35670.2" /translation="MSSSGVPVLHWNFGIGPITCHAWNKDRTQIAVSASSNEIHIFEF RNGEWQSVHTLSEHDLPVTGLDWGTKTNRIVSCSQDKNAFVWTFDKNVWKPELVLVRF NRAATYVKWSPLENKFAVGSGAKLVSVCYYEQENHWWVSKQIKKPIRSTVTCLDWHPN NVLLAVGSCDFKCRVFSAYVKEVDEKPSPNPWGQKMPFGQLMSEYTVGGWVHRVAFSP SGCRLAFVSHDSSVSFVDSTVVSSKKFSLKDSQKAQNLRTVHLPFTTVEWITENSIVA AGHDCSPVLFVVSQDILKEVCKLDVPSATKSSSVNSALQLFKNIDRNNAAEKVVVALK TLHQNRITQILPHSGTVGNVSKFTTCGTDGIVALWDLKVCYSNHPSLV" CDS join(897203..897316,897361..897463,897515..897666, 897798..898055,898105..898228,898285..898508, 898520..898949,898998..899077,899125..899286, 899320..899454,899509..899656,899704..899816, 899864..900052,900103..900568,900676..900944, 900978..901223,901712..901845,901960..902042, 902288..902397,902454..902669,902718..903007, 903052..903538,903583..903774,903820..904788, 904833..905000) /gene="CBG18175" /locus_tag="CBG_18175" /standard_name="CBG18175" /product="Protein CBG18175" /note="contains similarity to Interpro domain IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XT68" /protein_id="CAP35671.2" /translation="MEDDSDVWGKDEYCNACRVKCVDEYDKQEHRKTETHLKKWNLHK FFSSSIIHGTVAISEMLERYKLKKMHVVGLHQCQEIQQIGLPDHEKANFWTCNICYEA GATFESADAHLNSMVHIRNYMEECEYDNEKIEAEFANDECGKYEKYRSVAEEIFQQED GINGLQPPSILRMPLSKEDGKKQLGIKDTSEITFQPYPGEPDRTFMYCSTCNEIIPVH IVGKYTKDRAQANHFEHPSHQRCATICSIINEFDPEEIFEEYKSREDIGDIHWIERSP GQWYLSQPCGYRYCVRARNETMCTVCYALVDSDKISDHFSSEYHAFKYLKKKQLSFSF TNFQNMLDPYKSYIAHQLSGRDRREKARKKFIAEISLEQDNKKKLHKLTRFPATLKNM LEGDVHVHSDPPVEVIDDYKDNLPGTVFRFCQVCRTYIEFRAKFVDTEDKMNAIWTQH VLSPIHFQSAAMSYRISFDPSYFVPYSSTIFNIDTEVKGVWKVNKDVLIQTQCDVGLE YMIEDEKSNEVACQCCQKVFSKNPVFVNQHIRSYDHLKQYIMLVFQFLTAPDLVRTLL GPETDENKRKFLMDFLQRSSGIFQKRMTLYSKLKTLELSAWPSVSQRLVQSSLFADES GKDIYETVLKLVDEISCDGGNDAQITAREALIASRMVIINTHRGSDNELASVVCRCDN CQLLVIADASTWQKDIFTSHLCSEEHHKRSEVCKTNVISAFGILEEKSSYTVKPLVQN TSTKKIIWQWNAEAKKHEYVHGIVGLDDIIERRFPATDRITGISKKQADFYCTVCAEI FPKRASSLESHVKEMSHCVNWIHKHRPTHIRDLMKHMSNQTADKGKEYRKYLSGLLKE VQPPEAYCILVYDPFDVEEKRQTEIMLKIQAEEKAKKDAEKMAAVEQRKLEKAERAAE RKRKEQEEWDRNFEEENRRRQLERDREREREMQRENLRNHALANVHKYEKDSDLQNRL KFNSIIANQVSNNFTVLKNAERREIDVQKAKLEAEKLRLLSHNPNMASSAAMNPKLVI MPQLTSQPPAASHNPYVVPVSAPAVPPGINTSYDVFNSVKQPPPAQFFGPPPSLSFPQ NQPTPSAFPVQFRPIPQAQPEIPAYRKRPSIRGKLVDPVIHDRLRIRHKGDLLKHMRS MGAGEILDPAEIPREMSRNAEDNSDAYGITSIAEIVCLDDPSLDSYMCTICDHWAAPE GMIHHLCSQDHKSTYMYHNCKNHYQEIMKEKDVPIRKSIFKNFVKDLKTKEAGKLIKL RMKTIIDKATIERLWPGYEEYFYGKSTTESWSSSGFKTVVGPTIVLPEVINVPVLIGP DDMKVEREGSSRKQHENHRDNRRRERSRSRDRDRSRRSRSRSKSRDRRRRSRDRRSSR SRSRSRDRHYRDRRDRRSRSRSRSRDPSRSRSDSGSNHGRKQSGWEQQTDSFLASLGN GKSNTGLTSSQKHISTAADFNAKLATVRDLTQSGAIQGTQIDSFVTVPPPQPAPVAPT HSAESRKIEANRKLEQANRQQKVMGLLMALEGLLRHVSGNVPRETILAEYARFGLNEE EGNKALEEFIKNTETGKVSEQFTMGTQAPKKPITEVISSLGIGINPTPVQQYSFLHQH QPPQPVQLVQQQPPPQQYGISSQTSTSSAYSQAFGSRSVPQPQQEQDVPRPFYSNPST SMNHGGATDARNDGFSDGDASDEDYSDVYAAIGKQVRRKPISPKQTPEKKPEDPILPG QKMALARTILPNGARVGDPAQTTSIPKSEDLPVISASPSQSSTMSTPSATIAPISATA TLVPNTSQSAPIPHISQPPLPSSLGIPAPIAVTKALPQQPPQQQYLPQQQMMYPGAQQ LQQGYPPQQPGYQQNVYQQPYLQQMYQHPQQSQYAQQYGIQQPVYQQQPPQQQVYQQQ FYQPAQQQQQYLPVQQMQQQPPPQQYYQQPPPAQNASQYGIGGTPQQHFWPGQ" CDS join(906281..906377,906943..907019,907060..907407) /gene="CBG18177" /locus_tag="CBG_18177" /standard_name="CBG18177" /product="Protein CBG18177" /note="contains similarity to Pfam domain PF10912 Protein of unknown function (DUF2700) contains similarity to Interpro domain IPR024483 (Protein of unknown function DUF2700)" /note="Predicted" /db_xref="GOA:A8XT69" /db_xref="InterPro:IPR024483" /db_xref="UniProtKB/TrEMBL:A8XT69" /protein_id="CAP35672.1" /translation="MTTLKDQAKLRNETDAFFNALFIQAILVSLWTSVLEVVLLYGVI KNRSKLLRVSMYISLIHLTFDFGGILFTPVYFASQVSSGYKSNDTYPNILGVKTAEED RFVMGLVTGYSVEIISTASVARGFNQKEKTTEQLLFTVSVLQFVLINRCYVYAKSIEK GFLAQSKLSVLRF" CDS complement(908088..908399) /gene="CBG18178" /locus_tag="CBG_18178" /standard_name="CBG18178" /product="Protein CBG18178" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XT70" /protein_id="CAP35673.1" /translation="MKRRKERRRRMEKRRKKKRRTVKRNQRRRMIRRKERTRRMAIRE EKQDEKKETSKKSKKSKKSNKSKKTKKEKKDDDKKDDDKKEDDKKDDKKDDEKKDDVN F" CDS join(908725..908813,908860..909208) /gene="CBG18179" /locus_tag="CBG_18179" /standard_name="CBG18179" /product="Protein CBG18179" /note="Predicted" /db_xref="GOA:A8XT71" /db_xref="UniProtKB/TrEMBL:A8XT71" /protein_id="CAP35674.1" /translation="MSPLDYLHLTLMLIGPIAVVIGCGGKKKTAPPKAGSKMTPPPPA PASTAADGEKKSDKKDVEEKKDEKKEGEEMKDGEKKEEEKKDGEKKSEKKDDKKEGED KKDGDKRREEGREEGNIQKIQEIQEVKQVKENEEGKEGRRQEG" CDS complement(join(910031..910330,910379..911473, 911516..911695,912553..912630)) /gene="Cbr-brp-1" /locus_tag="CBG_18180" /standard_name="CBG18180" /product="Protein CBR-BRP-1" /note="C. briggsae CBR-BRP-1 protein ;" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XT72" /db_xref="UniProtKB/TrEMBL:A8XT72" /protein_id="CAP35675.3" /translation="MTKLGAQPGVHGSEDIEKEPIKIDPKVFTVLQPTIIPMPAPPMK PAPSPAWQAMRACFHCMFFATCLLLVTLIGFYFLAATPDLFKKTETVSSVDKPQMEAL LAAQPIEGSSEKTTNSAETAGIMAIPLARVVVVEDISNNNGEKKTVVDGSVEEKSTSN LDRPLHPDEIEQYRMMEARQQFQQMMEERMYMQQMMAMRMMRMRRLQAAYYQQQQMKM TYYQQQQQQMQEEAARQEWAERSRYEEEQRRQWEAQQAQAQQQRAQAFWQQHQMEIQA QQAQAQQAQAQWRQQQQEQQQQQPHFWPRPMMHQQQWQRPTVWQQPPQQFFFPSQQQK QQNQQPQQQQQPEDRFPQAPQFFQPVPEPSVHDKIYEELQKKSQNIPVNAPSRQIWTA ITPTPAPEASGNADVTVASNTAIPAVVASSTPMPEDAAEVSDTILRDIFSAFDEQKNS EAANKELNSAPATTEEPELEGKGAIVIEDSFPRIEERTTTPEPMESNEEIEHSSEDKD HEKELDPFAAVLKFFENNPPREVIEQQQQQETTEQPQKPLII" CONTIG join(CAAC03000665.1:1..10330,gap(934),CAAC03000666.1:1..30560,gap (55),CAAC03000667.1:1..17536,gap(4489),CAAC03000668.1:1..9145,gap (531),CAAC03000669.1:1..53801,gap(10),CAAC03000670.1:1..11823,gap (411),CAAC03000671.1:1..2728,gap(1073),CAAC03000672.1:1..26031,gap (220),CAAC03000673.1:1..48739,gap(544),CAAC03000674.1:1..19647,gap (593),CAAC03000675.1:1..3345,gap(70),CAAC03000676.1:1..3252,gap (2984),CAAC03000677.1:1..11198,gap(247),CAAC03000678.1:1..9933,gap (626),CAAC03000679.1:1..57380,gap(17),CAAC03000680.1:1..39607,gap (936),CAAC03000681.1:1..14483,gap(183),CAAC03000682.1:1..16784,gap (35),CAAC03000683.1:1..6410,gap(323),CAAC03000684.1:1..20794,gap (213),CAAC03000685.1:1..3693,gap(548),CAAC03000686.1:1..61037,gap (10),CAAC03000687.1:1..68484,gap(7632),CAAC03000688.1:1..25081,gap (437),CAAC03000689.1:1..62878,gap(526),CAAC03000690.1:1..39060,gap (525),CAAC03000691.1:1..35036,gap(320),CAAC03000692.1:1..6515,gap (314),CAAC03000693.1:1..16923,gap(486),CAAC03000694.1:1..3985,gap (505),CAAC03000695.1:1..9447,gap(350),CAAC03000696.1:1..15500,gap (174),CAAC03000697.1:1..29731,gap(10),CAAC03000698.1:1..29102,gap (1107),CAAC03000699.1:1..40268,gap(10),CAAC03000700.1:1..6838,gap (10),CAAC03000701.1:1..20244) //