LOCUS HE600951 1237826 bp DNA linear CON 17-SEP-2015 DEFINITION Caenorhabditis briggsae AF16 supercontig from assembly CB4, cb25.fpc0022b. ACCESSION HE600951 CAAC02000444 VERSION HE600951.1 DBLINK BioProject:PRJNA10731 BioSample:SAMEA3138181 KEYWORDS . SOURCE Caenorhabditis briggsae ORGANISM Caenorhabditis briggsae Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1237826) AUTHORS Howe K.L. CONSRTM WormBase Consortium JOURNAL Submitted (03-OCT-2011) to the INSDC. WormBase group, European Bioinformatics Institute, Cambridge, CB10 1SA, UNITED KINGDOM. REFERENCE 2 (bases 1 to 1237826) AUTHORS Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K., Durbin R., Waterston R.H. TITLE The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics JOURNAL PLoS Biol. 1(2), E45-E45(2003). PUBMED 14624247 REFERENCE 3 (bases 1 to 1237826) AUTHORS Ross J.A., Koboldt D.C., Staisch J.E., Chamberlin H.M., Gupta B.P., Miller R.D., Baird S.E., Haag E.S. TITLE Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination JOURNAL PloS Genet. 7(7), E1002174-E1002174(2011). COMMENT Details of C.briggsae assembly version CB4: To improve upon the C. briggsae nuclear genome assembly CB3, 167 AF16/HK104 advanced-intercross recombinant inbred lines were successfully genotyped at 1,032 single nucleotide polymorphism (SNP) markers. The resulting data were used to estimate high-density genetic maps. Sequences were assembled by combining the physical and genetic positions of the SNPs to inform the process of ordering and orienting the cb25 supercontigs into chromosome assemblies. 37 of the cb25 fingerprint contigs were split into 100 supercontigs to resolve discrepancies between the physical and genetic orders of SNPs. 638 sequence supercontigs comprise the CB4 assembly. The total nuclear genome content decreased from cb25 to cb4 because of the removal of three supercontigs containing mitochondrial genome sequence (totaling 20.1 kbp). Assembly_name: CB4 Assembly_program: Phusion Seq_technoloy: capillary (whole-genome-shotgun) Seq_coverage: 10x Annotation details: Coding seqences below are the result of integration and manual review of the following data : computer analysis using the programs Genefinder (version 980506; P. Green, unpublished data), FGENESH (Salamov and Solovyev 2000), TWINSCAN (Korf et al. 2001), and the Ensembl annotation pipeline (Clamp et al. 2003); similarity to other proteins from BlastX analyses (http://blast.wustl.edu); sequence conservation with C. elegans using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000); individual C. briggsae GenBank submissions; and personal communications with C. briggsae researchers. tRNAs are predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964). FEATURES Location/Qualifiers source 1..1237826 /organism="Caenorhabditis briggsae" /strain="AF16" /mol_type="genomic DNA" /note="supercontig cb25.fpc0022b" /db_xref="taxon:6238" CDS join(3651..3788,3835..3938,4486..4982,5030..5361) /gene="Cbr-sqv-8" /locus_tag="CBG_01067" /standard_name="CBG01067" /product="Protein CBR-SQV-8" /note="C. briggsae CBR-SQV-8 protein; contains similarity to Pfam domain PF03360 Glycosyltransferase family 43 contains similarity to Interpro domain IPR005027 (Glycosyl transferase, family 43)" /note="Confirmed by transcript evidence" /db_xref="GOA:Q5CAS0" /db_xref="InterPro:IPR005027" /db_xref="InterPro:IPR029044" /db_xref="UniProtKB/TrEMBL:Q5CAS0" /protein_id="CAP22198.1" /translation="MISSRIFEKWWLRAFVALVIFFIWQICYAINKVQGLEEEKTVLQ ATIEVLKRKSDMLRTEIHEKERTLTRLDGRIEEIDTQIRDHISLLPRVNRSTPFIYFV TPTHFRAAQKADLTRLSYTLSHVPNLHWIVVEDSDSLTSSVAEILKRSRLPYTHLNAR TPSAQKMKYTDPNWTLPRGVEQRNAALLWIQNQLSGVGSGVVYFGDDDNTYDLKIFEE MRKVDNAGVWPVGIVGGMFVETPVLADNGSIISFNSIWKPDRPFPIDMAAFAVNVTLI LSHPNALFSFDVPRGYQESTFLENLGIDRLNMEPLAEKCTKVYVWHTRTEKSKLSKGM VEKLTKKTGFNELESHALGVAY" CDS join(5889..6028,6075..6249,6296..6553,6605..6749, 6797..7194) /gene="CBG01066" /locus_tag="CBG_01066" /standard_name="CBG01066" /product="Protein CBG01066" /note="contains similarity to Interpro domain IPR007590 (CWC16 protein)" /note="Predicted" /db_xref="InterPro:IPR007590" /db_xref="UniProtKB/TrEMBL:A8WNZ3" /protein_id="CAP22199.1" /translation="MGERKGQNFYYPPDFNYKTHKSLNGYHGTHALRERAKKIDQGIL VIRFEMPFNIWCLGCHNHVGMGVRYNAEKKKCGMYYTTPLYEFRMKCHLCDNYYVIRT DPKNFDYELVEGCSRQELRFDPTDIAQVGAVDRGFAQKLAADAMFKKEHEASDKEKAA GEEGRVEKLEWIQERMRDDFSANSYLRAQFRNEKKYLNESRASDANLREKLSIGTTKL LPESEEDRRMASMMTRYKNSKTHGDHLHSTRDKIESRRIFDHPNTLSDTPSPSGSSSG VPMTSSERLKATMQAERDKRINATFSSSHRLLHQISTLSSASNLGIKRKSTVPSLIVR KKKTPVDSKTLEAETSVPVNPISLVSADYGDSSDASE" CDS complement(join(7343..7354,7786..7914)) /gene="CBG25443" /locus_tag="CBG_25443" /standard_name="CBG25443" /product="Protein CBG25443" /note="Predicted" /db_xref="InterPro:IPR000535" /db_xref="InterPro:IPR008962" /db_xref="InterPro:IPR013783" /db_xref="UniProtKB/TrEMBL:B6IER4" /protein_id="CAR98394.1" /translation="MINHTDRHLAYKVKSSNNSNYSVNLIYGILKVCDVKELIITRKS YL" CDS complement(join(8240..8307,8989..9236,9282..9355)) /gene="CBG01064" /locus_tag="CBG_01064" /standard_name="CBG01064" /product="Protein CBG01064" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WNZ4" /protein_id="CAP22200.2" /translation="MKKFAPILAGLLFLVDYSEAKMFESYSTRVKRNDFTNNYGYGPF GIGPTNGGFDSYGFYRDKFYNAGLPPLYSFASYRNYYHEISFHKNKYGQPAPTDFEVL QQERFGPYYDGVWGYADHSKNWFGKKR" CDS join(12216..12499,12548..12860,13232..13456) /gene="CBG01062" /locus_tag="CBG_01062" /standard_name="CBG01062" /product="Protein CBG01062" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WNZ5" /protein_id="CAP22201.2" /translation="MSASKSAAHILKRVLMVPPKHFTVEYAINPWMGGVVDKQKAQQQ WDSLKSAIEKAGVQVLTMDQTQGLPDQVFVCNSGLVYDNKVYLSRFRHKERTGEQPLY LEWFKKNGITTIGEGYEEIFEGGGDAVFSDRKTLWAGYGERSSKSVYERIKALGSFDI VLCDTVLPNFYHLDTCFAPVDETTSLYYPPAFSDATNKEILRRLPNSIAVSEAEANAF VCNAITIRDTVISPIGVSQNTKSALSARGKQVEEVDMSEFMKSGGACQCLVLRLL" CDS complement(join(13907..13972,14024..14101,14148..14278, 14337..14438,14534..14622,14898..15061)) /gene="CBG01061" /locus_tag="CBG_01061" /standard_name="CBG01061" /product="Protein CBG01061" /note="Predicted" /db_xref="InterPro:IPR035274" /db_xref="UniProtKB/TrEMBL:A8WNZ6" /protein_id="CAP22202.1" /translation="MKIFILSCLTLSAILAQQTSAPGGNLCLYTPVGDESNQKAVPIQ DFRTSGLDFVRPNWCVTHCADRKSVKVAARFQFANTSPEVPTYKVRRTYTRQSGVKVT AELTSGVPTKRDDDPDNFCMDDNVSAQIDAIVGNFTDIETMSEALNYYINKPGWAYII YDMGVPPSIIETDNVKHDMNYCSKFAQKQLPDGTWGLYQVFAGLIKSGN" CDS complement(join(16095..16335,16381..16524,16569..16825, 16875..17174,17219..17318,17362..17454,17507..17881, 17945..17994)) /gene="Cbr-cyp-13A10" /locus_tag="CBG_01060" /standard_name="CBG01060" /product="Protein CBR-CYP-13A10" /note="C. briggsae CBR-CYP-13A10 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR017972 (Cytochrome P450, conserved site), IPR002401 (Cytochrome P450, E-class, group I), IPR002402 (Cytochrome P450, E-class, group II)" /note="Predicted" /db_xref="GOA:A8WNZ7" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR017972" /db_xref="InterPro:IPR036396" /db_xref="UniProtKB/TrEMBL:A8WNZ7" /protein_id="CAP22203.1" /translation="MSIILLVITALLFGVLSYYLWIWIYWRRRGVPGPLGYPVVGSFL STIEHTNPQYLQIREWTKQYGSVYGYTEGTMKTLIVSEMDLVHQLFVTQYDNFYGRKL NPIQGDPEKDDRANLFSAQGYRWKRLRAIASPTFSNNSLRKINLTVEDCAIELLRHIE EQTTGGEPINMLQFYQEFTMDVIGRIAMGQIDSQMFRNPLLNFVKAIFADNRKHIPLI GGVFPVLAQIFRYFMLKFPFLGAANFIHVHKTMVSAVHNRIAQREEDKNNGIEPGEPQ DFIDLFLDARAEDVEHFGESNADFSKSSSYNNRQLTTMEVVGQCTVFLIAGFDTTALS LSYSTFLLATHPEIQKKLQEEVDIECPDSVITFDQLSKLKYMDCVIKETLRLYPLGTL ANSRRCMRATKLGNVEVEVGTMVQVDTWSLHTDTKVWGDDAKEFKPERWLLPETDKIS QKGGYIPFGLGPRQCIGMRLANMEEKILLSHILRKYTFKTGKKTDIPLKLHGRATTQP ESVWMHLVSRN" CDS complement(join(18311..18482,18531..18855,18900..19260, 19336..20109)) /gene="Cbr-arc-1" /locus_tag="CBG_01059" /standard_name="CBG01059" /product="Protein CBR-ARC-1" /note="C. briggsae CBR-ARC-1 protein; contains similarity to Pfam domains PF00071 (Ras family) , PF00643 (B-box zinc finger) , PF09439 (Signal recognition particle receptor beta subunit) , PF04670 (Gtr1/RagA G protein conserved region) , PF00025 (ADP-ribosylation factor family) , PF08477 (Miro-like protein) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR006687 (Small GTPase superfamily, SAR1-type), IPR013684 (Mitochondrial Rho-like), IPR005225 (Small GTP-binding protein domain), IPR001806 (Small GTPase superfamily), IPR019009 (Signal recognition particle receptor, beta subunit), IPR003649 (B-box, C-terminal), IPR017907 (Zinc finger, RING-type, conserved site), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR006762 (Gtr1/RagA G protein), IPR000315 (Zinc finger, B-box), IPR024156 (Small GTPase superfamily, ARF type)" /note="Predicted" /db_xref="GOA:A8WNZ8" /db_xref="InterPro:IPR000315" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR003649" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR006689" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR017907" /db_xref="InterPro:IPR027370" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8WNZ8" /protein_id="CAP22204.1" /translation="MTSEYGCNVCNEEYSVQDPLKCPRVLTGCGHTICHSCAMIIAGR NISIFCPFDRTSTNLPGGDLNNLKKNFALLELLEKIADTGGISEIGEGVQKHDRYAKD RLLNVKCDEDSEHVAVFYCTVCDSNLCDRCSEFTHSTNVLSKHRRVPLTEKPVPKVCC RLHSSYVVEFVCKEVSCDNESPLMCLMCRDYGRHKGHCHVLIEKEVDDLREKLREHLG ELTRQSEIVERSLNSINSTIHELTPETDDGSLEETKQEASIRNHFYRLHSTLDQDEIH ALETLDRYARNRLESLQAQKDRLEAVSTKIGSTCITLQKALVLEKDNILDRKDDLLAL AESTNAEPTEVPDRSQLRTRIAFSFSNDRKLHIGDFIEARVVLLGLDGSGKTSIVRRL KKVRIDAVMAPHPTSGFNIETIHYKNYRLNVWDVGGLPKLRNLWKHYYSNAQAIFYVI DGHAVERFNEAIKELNKVMSDPLLISCPVIVAINRKGGASSLNGHMDVLMSQLEALPF QHELHFCDAAQGSGIDQILDQITVCLSRLNGTCPV" assembly_gap 20282..20394 /estimated_length=113 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(20715..21078,21124..21240,21293..21491, 21543..21806,21863..21986)) /gene="CBG01058" /locus_tag="CBG_01058" /standard_name="CBG01058" /product="Protein CBG01058" /note="contains similarity to Pfam domains PF12796 (Ankyrin repeats (3 copies)) , PF01585 (G-patch domain) contains similarity to Interpro domains IPR000467 (D111/G-patch), IPR020683 (Ankyrin repeat-containing domain)" /note="Predicted" /db_xref="GOA:A8WNZ9" /db_xref="InterPro:IPR000467" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR020683" /db_xref="InterPro:IPR036770" /db_xref="InterPro:IPR039146" /db_xref="UniProtKB/TrEMBL:A8WNZ9" /protein_id="CAP22205.2" /translation="MSYNLPPQNLSNLDPEQRVKFVKATGNEKNIKVSDPDDIPEAST SKDPSNTESDGFSEIYSALLEKSDKAKPKVKKEKLEHDDDIIILDDVVKKEPRVVSKN LNIRHVNGFLKAAKEGNLEELKMYLRKKIPIDVTDFYSWTATMCAAAEGHFEIRKYLL ENGADPGVRDNNGMGIAHRNTTNDFVRKLFAYFCNSNPSSNSSEPDKFTFCELCDVFI LEKEITNHVSSITHQLNDKISTGAVSQTGIQIGPSNIGYRLMCASGWTEEQGLGRHSD GYRFPIKTILKRNRAGLGMERLPQKVTHFGPFESSCTKTEKKKPVTKRVLEVKKKKED LIAKRFRSDFSDNDSVYDFFK" CDS complement(join(22899..22967,23014..23321,23365..23542, 23592..23726,23773..23937,23983..24107,24157..24324, 24473..24669,24716..24819)) /gene="Cbr-taf-8" /locus_tag="CBG_01057" /standard_name="CBG01057" /product="Protein CBR-TAF-8" /note="C. briggsae CBR-TAF-8 protein; contains similarity to Pfam domains PF07524 (Bromodomain associated) , PF10406 (Transcription factor TFIID complex subunit 8 C-term) contains similarity to Interpro domains IPR019473 (Transcription factor TFIID, subunit 8, C-terminal), IPR006565 (Bromodomain transcription factor)" /note="Predicted" /db_xref="GOA:A8WP00" /db_xref="InterPro:IPR006565" /db_xref="InterPro:IPR009072" /db_xref="InterPro:IPR019473" /db_xref="InterPro:IPR037818" /db_xref="UniProtKB/TrEMBL:A8WP00" /protein_id="CAP22206.1" /translation="MHGPFNRRPGRNYYPQGYPLHQYAARPQNYQQTASNLTAVPQKQ TESRAQKQVGANFLPSVVNEAYHNVLEQVVTAMCYKSGFDDIEEGALETLMLIFHSYI KRIGGQSRLACEMAGRTLVSPGDVWFGLVNMGIHVRELSDFHQDQVISALTVHAPEII PPEAKNQALRIGTPRPHPNYVYEWLPPLPDPHTYIKTEICEDIDFTYEKVREAMAQKK RNGITSLVNYMVRSYPSMCLFRNFETIIHEKVRETFNRESEEKRMQEAFIAFRDLLNT NDIEEAKNIEKSLFNKGLINQHELQSGTEVVCMCSDGALLNQFGQRVYISKNTLIDLE SRDRISKSSLRMSACGDGAESLRYHWPVDEMLDDLIELDSCTMDLGDDTPDEMKYMQE KTTLEYLPEWCHILVPSFEHRAYLTAVADELKAGEGLRRDREKEKDEKEVKDEMDEET DEKKKKEEEIAHSNLYLCPPINDMDLKDEETS" CDS join(28114..28297,28511..28695,28757..28957,29007..29087, 29134..29248,29292..29773) /gene="CBG01056" /locus_tag="CBG_01056" /standard_name="CBG01056" /product="Protein CBG01056" /note="Predicted" /db_xref="GOA:A8WP01" /db_xref="UniProtKB/TrEMBL:A8WP01" /protein_id="CAP22207.2" /translation="MSLELPFSLSCLSLAIVGIYLNACFLRSSHRSTVFPRFCCKQIR FLSAMQIVLAASNIVAIGSMLFFRTNRTKKSESFFSTTLSATRAVPQLTVLWTTLERV MFKMGPCLRDNPKFRHTAFYRIFQIFFSTIAEIVIRTAFMNTEEQIEISANNSLIEMS NSEELFIKSTLISNVYFDYYHGIIFIPCLAIAVMMFNSARASHARAGLLGGMRNDSKI QNLSGQMKFFKRSYIPLYFTCLSDFLFQVIIKRGLDLEDSIIDFLYINARCYLPIAYP LALIALNKNLRADYFANIILCRKARNLHKESKVKVIATKESQESIIANLKMIGILSDV DTSQGGPSAAGLAMMGMGPGIGRPTSSIGGIQRVSISKDPTSITSVTSMANTSVTSMG GPSNMMMFHTRPKSSVPSMGSVG" CDS join(32061..32147,32935..33060) /gene="CBG01055" /locus_tag="CBG_01055" /standard_name="CBG01055" /product="Protein CBG01055" /note="Predicted" /db_xref="GOA:A8WP02" /db_xref="UniProtKB/TrEMBL:A8WP02" /protein_id="CAP22208.1" /translation="MSTTSGAPTTIPQENGGAGANQAATTNNQEEIDIDLKDPQVQDA AKKIQNVFRGKRFGAKATAPAEDAKQ" CDS complement(join(33260..33445,33502..33767,33818..34618, 34660..34766,34875..34924)) /gene="CBG01054" /locus_tag="CBG_01054" /standard_name="CBG01054" /product="Protein CBG01054" /note="contains similarity to Pfam domain PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain contains similarity to Interpro domain IPR003702 (Acetyl-CoA hydrolase/transferase)" /note="Predicted" /db_xref="GOA:A8WP03" /db_xref="InterPro:IPR003702" /db_xref="InterPro:IPR026888" /db_xref="InterPro:IPR037171" /db_xref="InterPro:IPR038460" /db_xref="UniProtKB/TrEMBL:A8WP03" /protein_id="CAP22209.2" /translation="MSLKMASKLKNVFTVSRNFTNGPRLPTKLLHAKPGFVPKYVPAD EALAMVESNNDIYVGNHASAPNVLLEALCRRVDSANLNNIRMSHLILSGNCPQFDPKY RGKILNNSLFICPGNRKNVNLGTADYTPVFLSEVPSLYTSGTLNVDVALITVSPPDDL GFCTLGVDIDCTLAAATSAKKIIALVNSTMPRTRGHTTVHSSHFAAMVQTDRPIAFRQ GNEEMSEVEQRIGKLIAENLVDNGATLQLGIGAIPDSALAAMNQHKDLGIHTEMFSDG VTDLIDLGIINNQKKAFMPGKTVSSFAFGTKEFYKKIDNNPEFYFAPCDFTNHIDIVR RNSKMTSINSAIEIDLTGQIVSDSIGRNFFSGFGGQVDFMAASPHGFDGLGKAIIALP SRTTKGQTKIVPFLTQGSGVVTTRAHARYIVTEHGIANLWGKSIRQRAYELIQISHPD DRETLEKAAFERFKVMPSA" CDS complement(join(35880..35915,35960..36347,36402..36700, 36767..36904,37014..37361,37406..37914,37967..38219)) /gene="Cbr-wee-1.3" /locus_tag="CBG_01053" /standard_name="CBG01053" /product="Protein CBR-WEE-1.3" /note="C. briggsae CBR-WEE-1.3 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:Q626B1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="UniProtKB/Swiss-Prot:Q626B1" /protein_id="CAP22210.1" /translation="MDETENNTSIDSVEVGPSSPRVVATPRIPIPVMMRETPLSTKRE RQALTPRFRRPAPRMIKTVPQTRSIWSVRKDTTPQLVTPHGPQELESPHYDRANTQTF FEQVFQIDEIIGRGSFGEVFAARCREDSRLYAVKVSIAPMRQHSMSKYREAESHMIIP PHKNLVKFYRAWEETDRLYIQTELCEQSLQQYCSVQHALPENEIWNIFVDLLEAVHHL HSNDMIHDDIKPENIFLTKHKICKLGDFGLVINLKNPNDVKSAEEGDSKYLAPEVLNG KPTFASDIFSLGVTILEAATDLDVPSNGDAWHQIRNGQIPERFFVGISSDLRVLIEQM INKEPMKRPTSDALRKHLSIRTRLDSRRRYILSMDMRDGFCNLMSSILVWCMAFLSVV FHPVTRFHEAINNRRSELCAQFVNNQQHTPIQTPETSKVYSESLTGVALRQASQISPF DFSDDENPPHSQRRLFTGPVSRRLNFDDEMEDEEQATCSSSNSSAIETAEDSLSSPKK PVIPVTRQGTPKSARRLIPSYRNRSGSRDPTHHAGAGDSMNSSILDQERTDRYLRMRL AEQQLDWNDHSNMIDEAPPPMSCPPRIRRSLRDMPRMPVLNFNLLDEPIKKGKEKPVV EPAELRQRPMRNGLKSLRSRMASFQGSSGDEN" CDS complement(join(39527..39697,39743..40181,40232..40329, 40376..40597,40647..40733)) /gene="Cbr-mop-25.2" /locus_tag="CBG_01052" /standard_name="CBG01052" /product="Protein CBR-MOP-25.2" /note="C. briggsae CBR-MOP-25.2 protein; contains similarity to Interpro domain IPR013878 (Mo25-like)" /note="Predicted" /db_xref="GOA:A8WP05" /db_xref="InterPro:IPR011989" /db_xref="InterPro:IPR013878" /db_xref="InterPro:IPR016024" /db_xref="UniProtKB/TrEMBL:A8WP05" /protein_id="CAP22211.1" /translation="MLKPLFGKADKTPADVVKNLRDALLVIDRQSATQNERKVEKAIE ETAKMLALAKTFIYGSDANEPNNEQVTQLAQEVYNANILPMLIKHLHKFEFECKKDVA SVFNNLLRRQIGTRSPTVEYLAARPEILITLLLGYEQPDIALTCGSMLREAVRHEHLA RIVLYSEYFQRFFVFVQSDVFDIATDAFSTFKDLMTKHKNMCAEYLDNNYDRFFTAYA ALTNSENYVTRRQSLKLLGELLLDRHNFSTMNKYITSPENLKTVMELLRDKRRNIQYE AFHVFKIFVANPNKPRPITDILNRNRDKLVEFLTAFHNDRTNDEQFNDEKAYLIKQIQ ELRV" CDS complement(join(41072..41328,41377..41671,41797..42022, 42185..42375,42421..42543,42586..42727,42780..42913, 42960..43055,43161..43283)) /gene="CBG01051" /locus_tag="CBG_01051" /standard_name="CBG01051" /product="Protein CBG01051" /note="contains similarity to Pfam domains PF03942 (DTW domain) , PF04893 (Yip1 domain) contains similarity to Interpro domains IPR006977 (Yip1 domain), IPR005636 (DTW)" /note="Predicted" /db_xref="GOA:A8WP06" /db_xref="InterPro:IPR005636" /db_xref="InterPro:IPR006977" /db_xref="InterPro:IPR026637" /db_xref="UniProtKB/TrEMBL:A8WP06" /protein_id="CAP22212.1" /translation="MEPSYYNQYEKTPRQRSNSNAGGLGDNQNGQFGMQAQLGKMMWE AGSKQVQDTFQSYGRIDLFRPYFDVDPAEVRTRLIRSFIPRKPSQIQVSPDLYGPTMI ILTMVALLLYHMKTSGIVIQNGTLMGTAIFTCFGSWMLISGALWIACFLLAAEQPFLT ILSSFGYSLTSQCLVLLLTSVFHSSHDHLFFFVLLASFCVPSALRMGLIICNQSRLPA NRLMLIGIAIGANLLLILYLHFGFHVVLEELDEMVGEAIVDVKAVQETIPVAQINIFS LLLFLYIWVRYFFEISAMSVISEHDVHLSSFEPVAKCVKSMCPKCKASRMYFCYDCRT PQPGVFTPSVKLPCSVDIIKHPKEKNSKSSALHCKIVAPDQTRVFDYPDVHDYSKDSE EERRTTAIIFPSASAISVEEFVRTRGEIKRIVVLDCTWFQVGVMQKTPQIQGLQHVSL QSYRTAFWRPQHKVPETGLATIEAIYYSLREYQELGLKETYSGEFDDLLYWFFLTKHF VDEKQTEYFKRKEEKEEKNK" CDS complement(join(43740..43814,43862..43994,44038..44264, 44308..44517,44563..44813,44857..44990,45603..45813, 46082..46313)) /gene="Cbr-glt-5" /locus_tag="CBG_01050" /standard_name="CBG01050" /product="Protein CBR-GLT-5" /note="C. briggsae CBR-GLT-5 protein; contains similarity to Pfam domain PF00375 Sodium:dicarboxylate symporter family contains similarity to Interpro domain IPR001991 (Sodium:dicarboxylate symporter)" /note="Predicted" /db_xref="GOA:A8WP07" /db_xref="InterPro:IPR001991" /db_xref="InterPro:IPR036458" /db_xref="UniProtKB/TrEMBL:A8WP07" /protein_id="CAP22213.1" /translation="MGMSTNKCGARWTSWLTKNMLLLMTMAGIVMGVIIGGVLRNLEP SQEIVKYVGFPGELFMNMLKAMVLPLIAASIVSGLSQLDGKTSGRLGSRAVMYYVITT THAVILGIIVVSIIHPGDPTIKQKMGIEEGATANESAAQKFLDLFRNAFPENIMRATF SQYQTHYVNVTNSNGIQKTELKTGYVDGMNVLGIIVFCIVMGLVISKIGEEAKPLANL FHALDVVITRMVMIIMWLGPIGIPSLIAQKMLEVSDLWQTARVLGLFVFTVILGLGIQ AFITLPLIYVIGTRHNPYKFLSGLGQAIMTALGTSSSAASLPVTFRCLNKLGIDPRVT KFVLPVGAMVNMDGTALYEATASIFIAQMNGLDLSAGQIITVSITATLASIGAASIPS AGLVTMLIVLTALGLPANDISLILAVDWVLDRLRTSVNVIGDALGCGFVHHICADHLN ADVAEAEKAHAFVEAHGVNFDELEKEIEQENNNHKTIQHV" CDS complement(join(51162..51252,51311..51401,51446..51508, 51552..51701,51787..51925)) /gene="CBG01049" /locus_tag="CBG_01049" /standard_name="CBG01049" /product="Protein CBG01049" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP08" /protein_id="CAP22214.1" /translation="MQIYSQSSNMLFLISALVLEIHFNYATALPPRRVNLYKWLAHNS YICDPTLLNKRSYRFLVPRESLRSRCSCGDPLLTKSACGKRFGTRNKTQCFRIPESCL QEYNVIFENGGNRLPRPLSRNHSMASKKPISFPNRKPSVAKRLLVKKRLLRVQKIVST IPVTTVLQVRKLKRLSG" CDS join(53679..53736,53802..53902,54085..54158,54279..54468) /gene="CBG01048" /locus_tag="CBG_01048" /standard_name="CBG01048" /product="Protein CBG01048" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP09" /protein_id="CAP22215.1" /translation="MFLSTTTVQRIFVLFLNLPIISTFSLLDRVHGKDVRTSIPDFRT SDADVGMRSAHFIGSFRGQPIKTRQHHAFIDDNGVPIPLLPYHEHFSTGSAESLSSPL QNKHKALMRERKIFKWAKEIGGIAKKRRRRSGWSSGRT" CDS join(55554..55859,55910..56061,62138..62186) /gene="CBG01046" /locus_tag="CBG_01046" /standard_name="CBG01046" /product="Protein CBG01046" /note="Predicted" /db_xref="InterPro:IPR016024" /db_xref="UniProtKB/TrEMBL:A8WP10" /protein_id="CAP22216.1" /translation="MKTPEEVQTEMMSQLFRSKSGEYKKLNESVEYHDNAKKNKHEDV SASFPCTFPDYLLLFQPSTLTNQDPSELLASLEKALSEKSDNLEFEQSLHSLITLVIG MFTSSPHWLVRDKALKCLRLMNQKLGNQSIDKHAKALISCRKQRKVLKNLLTPVKPPC FTLCPDEI" CDS complement(join(56203..56523,56579..56800,56845..56957, 57059..57296,57359..57552,58184..58250)) /gene="CBG01047" /locus_tag="CBG_01047" /standard_name="CBG01047" /product="Protein CBG01047" /note="contains similarity to Pfam domain PF00100 Zona pellucida-like domain contains similarity to Interpro domain IPR001507 (Zona pellucida sperm-binding protein)" /note="Predicted" /db_xref="InterPro:IPR001507" /db_xref="UniProtKB/TrEMBL:A8WP11" /protein_id="CAP22217.1" /translation="MSRGIFRKRFEKVLEDIPKEKLGEPRIRCAPTGITVLLEADSPF KGALFLKGSADKKSCKADFSTQPSQNISFEFGFDDCPSRRKRQIAAPRGMTMSSVLVV SYHGSIITHRDVAYQIDCFYREENSKVETMLAVNAPQPRSLSDAPKLPTCDYRVEVTG GKAVAGGVVTSSLSESAQVANVGDSVIHIWTCSGDTPSDIYCIQVYSCTAEDGGADNV QVVDENGCTTDGELLSPIKYKEGSMRAAASSHAFKFVDNHIVYFKCNIRITMKSPTGE CPVNNCSPEGSTGTLSRKTRSPNISEYPFIIFPKIFKFNTPRLELPEYSILVTSGEII VEEEHAKNHILSTYRPNKELFYSHEKSRYFNKANRFLSFLNLFTVLLLLL" CDS join(66162..66307,67250..67328,68725..68871,69127..69319, 69632..69975) /gene="Cbr-mab-3.2" /locus_tag="CBG_01045" /standard_name="CBG01045" /product="Protein CBR-MAB-3.2" /note="C. briggsae CBR-MAB-3.2 protein; contains similarity to Pfam domain PF00751 DM DNA binding domain contains similarity to Interpro domain IPR001275 (DM DNA-binding)" /note="Predicted" /db_xref="GOA:A8WP12" /db_xref="InterPro:IPR001275" /db_xref="InterPro:IPR026607" /db_xref="InterPro:IPR036407" /db_xref="UniProtKB/TrEMBL:A8WP12" /protein_id="CAP22218.1" /translation="MLTEDSVPEICDARSAVAGLAEQEKNYYCQRCLNHGELKPRKGH KPDCRYLQCPCPECKMVEQRRQLNNLLSKKKVQCTPNTQTLNGKRVRDPHCARCSAHG VLVPLRGHKRTMCQFVTCTCTLCALVENRRMLMAAQIKLRRSQQKSRDGKEPKTKKGR KPRGTTPINMENMNRIMMVVTTEDQKRTGTSTSPSPSFTIDTMSPSLSISPPPSPPTL SSPVFTPNPPILAAPIPVYPQMTPNIHQLLQNQLLLTYIQTLLPTVPLEPVQSQVTPL LTPPNFVITEQLGALCNMYMKDSLKI" CDS join(71581..71651,73321..73399,74796..74942,75198..75390, 75703..76046) /gene="Cbr-mab-3.1" /locus_tag="CBG_01044" /standard_name="CBG01044" /product="Protein CBR-MAB-3.1" /note="C. briggsae CBR-MAB-3.1 protein; contains similarity to Pfam domain PF00751 DM DNA binding domain contains similarity to Interpro domain IPR001275 (DM DNA-binding)" /note="Predicted" /db_xref="GOA:A8WP13" /db_xref="InterPro:IPR001275" /db_xref="InterPro:IPR026607" /db_xref="InterPro:IPR036407" /db_xref="UniProtKB/TrEMBL:A8WP13" /protein_id="CAP22219.2" /translation="MSTGDTSKKDDDEITRCLDSMEKVYLQCPCPECKMVEQRRQLNN LLSKKKVQCTPNTQTLNGKRVRDPHCARCSAHGVLVPLRGHKRTMCQFVTCTCTLCAL VENRRMLMAAQIKLRRSQQKSRDGKEPKTKKGRKPRGTTPINMENMNRIMMVVTTEDQ KRTGTSTSPSPSFTIDTMSPSLSISPPPSPPTLSSPVFTPNPPILAAPIPVYPQMTPN IHQLLQNQLLLTYIQTLLPTVPLEPVQSQVTPLLTPPNFVITEQLGALCNMYMKDSLK I" assembly_gap 71748..72747 /estimated_length=1000 /gap_type="between scaffolds" CDS complement(join(78022..78089,79051..79134,79183..79300, 80295..80390,80435..80749,80867..80967,81021..81069)) /gene="CBG01042" /locus_tag="CBG_01042" /standard_name="CBG01042" /product="Protein CBG01042" /note="contains similarity to Interpro domain IPR004087 (K Homology)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:Q626C1" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR036612" /db_xref="InterPro:IPR039912" /db_xref="UniProtKB/Swiss-Prot:Q626C1" /protein_id="CAP22220.1" /translation="MATSSSAFDDEFPMEEGMPELLDDEDVPSTLPSLLEQNMDTALK SNEFKLVKRKRRAGNAVDVVMEDISQPDDSTTDSPDADAEQKPTKRSKGSKGESRVVP VPKHRYTPLKDNWVNIFTPIVKNLGLQIRFNLKKRQVELRNPADREDTTDLQKATDFV RAFILGFEVNDAIALIRLDHLFLETFEIADVKHSLKGDHVSRAIGRIAGKDGRTKLVI ENTTKTRIVVANTKIHILGAYQNLKLARNAVCSLILGSNPSKVYGNLRNMASRGAERL " CDS complement(join(81292..81615,81648..82323,82367..82791, 82832..82964,83015..83689,83746..83897)) /gene="CBG01041" /locus_tag="CBG_01041" /standard_name="CBG01041" /product="Protein CBG01041" /note="contains similarity to Pfam domains PF08625 (Utp13 specific WD40 associated domain) , PF00400 (WD domain, G-beta repeat) (8)contains similarity to Interpro domains IPR019775 (WD40 repeat, conserved site), IPR001680 (WD40 repeat), IPR013934 (Small-subunit processome, Utp13), IPR020472 (G-protein beta WD-40 repeat)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WP15" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR011047" /db_xref="InterPro:IPR013934" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR019775" /db_xref="InterPro:IPR020472" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:A8WP15" /protein_id="CAP22221.2" /translation="MTEPIKEIATKRSVEAVYTGGTVRWSANGQKLFSTCTNVVKVID LEDNSASYTIGDSDDELRITCTAIDKNRNRLLVAYNNQVIREYSIPLDPSMNNPELAR TWKTMHTAPILVMEFDEGGNILATGAADHVVKVWNLTEQQCTHTLKGPAVVSAILFGK NEKLVVGYIEGQLHLYNIMIGAPKKHVNTWNNHNSHITALLQVPDSRYIVALSRDQTM SIHETETQETLRVLPLYESIESGAIGHNGNLFTVGEEGFVKEWVIESAKLLRKKRISS SQIDDVSYDVVSNRFLAISAEQNLIVLDFDSLNIIRQIVGFHDEIYSCCLLGKEETHM AVASNTSEIRLYNTKTLDCHLVRGHTESVLSVVSPLWDTSLLASCSKDNSIIIWRLVS TPEESSTLIPLCAATGHSNTVTSLAISNSARASFLASVSSDCTIKLWELGDSAKMKDA SIDGERDFVEQLPKLTCSSTMVAHGKDVNCVDISESDALIATGGMDKLVKLWQVDTQK MQLGIAGTLSGHRRGVGDVKFAKHSHKLASCSGDMTIKIWNISEKSCLQTITGHSCAV FRVIFVRNDAQLLSADSAGIIKIWTLKTADCESSIDAHTDKIWSLSKNHDESEFVTAG TDGRIIVWKDVTEEKQRVEDEKRREAIEQDQTLTNLLSQKRFSDALVFALTLAKPFCA YKVLEVVIALMSEDTQEELGSAICRLDQRQIEILLQFCVKWNTNSRHSPVAQRVFYEI IHIIEPDKLVAMPGAYGYIESLLPYTQRHMDRLDRAKQDVSLFGFVWRQMRSAV" CDS join(84526..84816,85362..85691,85788..85896,85942..86696, 86780..87624,87672..88137) /gene="Cbr-nos-3" /locus_tag="CBG_01040" /standard_name="CBG01040" /product="Protein CBR-NOS-3" /note="C. briggsae CBR-NOS-3 protein; contains similarity to Pfam domain PF05741 Nanos RNA binding domain contains similarity to Interpro domain IPR024161 (Zinc finger, nanos-type)" /note="Predicted" /db_xref="GOA:A8WP16" /db_xref="InterPro:IPR024161" /db_xref="InterPro:IPR038129" /db_xref="UniProtKB/TrEMBL:A8WP16" /protein_id="CAP22222.2" /translation="MSGQQFQQHSQQQPQQQRAPVSFNNNKNGAQNQNNKSNSTAHSA TNSSANGSSFEYAEPPVAGNTNRTTPDSGLGTDDQKQSTTPANTAARGGPPGFNQNRG PPPHHQRHQQHHQNNLHHPQQQQHQQAQYYQMRPQQPPNGMVYYNVQQQNQHGGGQYA PPPSQQQEGFDQSYGAGGYDGGQGPPPPPPHQQHQNQQHHQRGPNFRQYQQMDGPPGG YGGDDGNNNFVIHGPNDGFDGRPQYNPPAGSQGPPQPMQQHQNQQQMANQGNYEIDQF RPGGPPSVQGYQPQNNPQQAQYYAGSVIQQGAPYQQGYSGGGGGQYRGGPPPQGPAPI MQLMPPHGQQAPQHPQQAVIYGMPMPTAMYVPVPAPIVVRQQPVVNSHSDTGKDSGNQ NSARKNKRNSQNEQLEEGPQSQHEISAQQQQPPPQQQHQQQQPQPSQHAPQQPQGYQE FVPNPYHRQIPATGYGNFQHPPPQHPQQQVDPQIVAQQQQMHHMQMNPYGMMPHPGGP PPPHAATMMNPMGMNPQQQQYPYMPMAAPHQMAHMQQQHQQHQRRQGNVEPLMGAPPF QMAQMGPGRGGFMHQPMGYFNAPTSRGSGRGGRGGRGGSNNYNHSRQNSNQSWHSQNQ GGQGPRSGAGNQFDHYQQQDHQDDDVSHVTNRIELLKPVSHAGSPSKQILQLVEPKED ANMDVQNSAEGSRSSTPRHRKKKDSKNQKTDVKESSKAEDEPKPVEEVNEKTPAVEEP TEAVEVKELAAQPAPTGLHCYRCEYYKLPEEEVSSHNIRKDNGDLWCEYMKKIKCEHC EATGEKGHHPLVCPKKKEEERIAKSRESSRGGPTPPVHRQRDLQEIVDDQDAVTDSPS PPVQYQQKSRQNSENRSDNRPYHQRGDQRGYGGNGNNYRGRSSGVNGQRGGRGGGYAR GRGSGNYEVDIVLCETP" CDS join(89457..89591,89698..89805,89861..90121,90173..90340, 90388..90657) /gene="CBG25444" /locus_tag="CBG_25444" /standard_name="CBG25444" /product="Protein CBG25444" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IER5" /protein_id="CAR98395.1" /translation="MYGHPNRIIESLLFNKAKQKSEPSTTGSNSLSAIRYSEFHVNSC LDSVVPRPTCHVNNQCFCYKNAADCTTCSSQCTEDSDIFYLTSSESRSHAGSSSEDGS SLEAEVDDYREKVNDSSGVFNIPALHEIDDLIDILKTKTMEYREEFEKLAETFGQMLT IVGFQKAVLNDKLQYVESKISEEEFTVQIENIENEEISVEVSQKMLDMGKEEFASLRS DYLNRLIHEDIMKSNKMRIEEMKERLETMRRIDEDPEPSRSLELDLNKILDDVSTGRS FCEPTYSLINAFFVFQVSKICDQCYCSSLSDPESRLK" CDS join(93788..94000,94710..94868,95236..95355) /gene="Cbr-nlp-11" /locus_tag="CBG_01038" /standard_name="CBG01038" /product="Protein CBR-NLP-11" /note="C. briggsae CBR-NLP-11 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP17" /protein_id="CAP22223.2" /translation="MKMNTLVLLAICVACACAAPNPAPQGAAPEANRGDWAAIYEFEV SHSIIKNIKTLPLTEKLLSNICRALADAPASLFKRAPLLQSKRHISPSYDVEIDAGNM RNLLDVGKRSAPMAADYGNQFQMYNRLIDAGKKKRSSMISPSYQFEDALGLSDALERA GRR" CDS join(103085..103104,104163..104291,107883..108002, 108050..108133,108182..108274,108643..108742, 108793..108965,109057..109211,109257..109365, 109411..109503,109547..109727,109782..109801, 109932..110031,110163..110258) /gene="CBG01037" /locus_tag="CBG_01037" /standard_name="CBG01037" /product="Protein CBG01037" /note="contains similarity to Pfam domains PF02214 (K+ channel tetramerisation domain) , PF07885 (Ion channel) , PF00520 (Ion transport protein) contains similarity to Interpro domains IPR005821 (Ion transport), IPR000210 (BTB/POZ-like), IPR003972 (Potassium channel, voltage dependent, Kv1), IPR003968 (Potassium channel, voltage dependent, Kv), IPR003131 (Potassium channel, voltage dependent, Kv, tetramerisation), IPR003091 (Voltage-dependent potassium channel), IPR013099 (Ion transport 2)" /note="Predicted" /db_xref="GOA:A8WP18" /db_xref="InterPro:IPR000210" /db_xref="InterPro:IPR003131" /db_xref="InterPro:IPR003968" /db_xref="InterPro:IPR003972" /db_xref="InterPro:IPR005821" /db_xref="InterPro:IPR011333" /db_xref="InterPro:IPR027359" /db_xref="InterPro:IPR028325" /db_xref="UniProtKB/TrEMBL:A8WP18" /protein_id="CAP22224.2" /translation="MIDGLIRRLEQVLNVHPEKYQNGCSSQRPSRQSSPDQLLTSIRS RSADFGRAAEMAGGNSEEGKGMLLRNGDDKVRHPSPQRGTPDSSSTQGHQFIDQIVTI NVSGMRFQTFESTLARYPHSLLGDPTKRQHYFVPDTNEYFFDRHRTTFESILYIYQSG GRVKRPEIVPIDIFLREMRFYEMGDELLEEFWIAEGYEKPKEVMMPTNKTQRKIWELM EYPDSSLSARIIAFISIFVIALSIISFCWETVPSDNDDKVINMTTGELIDELDEKHYS PFFWIELMCILWFTIELILRFISCPCKVTFVTSILNIIDFVAIAPFFVNFFLADTNKS NSSMSFAVLRVLRLVRVFRVFKLSRHSVGLQILGKTFRSSVQEFCLLIFFMAIALVLF ASGMYFAEQGEPNSKFTSIPASFWFVLVTMTTVGYGDLVPLSPFGKVVGSMCALIGVL TLALPVPIIVANFKHFYRQENRLASMKSTTKGDHEDDDVA" CDS complement(join(111051..111185,111237..111340, 111387..111519,114175..114464,114509..114605, 114654..114746)) /gene="Cbr-aqp-10" /locus_tag="CBG_01036" /standard_name="CBG01036" /product="Protein CBR-AQP-10" /note="C. briggsae CBR-AQP-10 protein; contains similarity to Interpro domain IPR016697 (Aquaporin 11/12)" /note="Predicted" /db_xref="GOA:A8WP19" /db_xref="InterPro:IPR016697" /db_xref="InterPro:IPR023271" /db_xref="InterPro:IPR031145" /db_xref="UniProtKB/TrEMBL:A8WP19" /protein_id="CAP22225.1" /translation="MDALTNEYYFPLYSALGYFTLVFGLGEISRILTSKYVSSRGNAQ LFLYELIGTIQMCTCVYENGIIFKNYGFPAIFLCVGLLLTAGGIFNRDAWTNCAPIFE QFIFGNLGSSKFVTILSAQLIGAAFASKVAYLIWNLTAPYSAAHLENASNLDCVLHYK QSAGIVIGFEIIGAFVVRVVVSLLLNRPALIKLIPFAISAYLTLALYIVGVPGLNPIV ATARLYGCQGIDNTSFMILYWFCPVLGWLAGAYFVGQKGPVKKTAKEVKAAKKEKKAA AAAKKSD" CDS join(116580..116681,117197..117256,117299..117390, 117433..117580,117627..117718,117892..118227, 118273..118551,118597..118651,118783..118887) /gene="CBG01035" /locus_tag="CBG_01035" /standard_name="CBG01035" /product="Protein CBG01035" /note="contains similarity to Pfam domain PF00595 PDZ domain (Also known as DHR or GLGF) contains similarity to Interpro domains IPR006643 (ZASP), IPR001478 (PDZ/DHR/GLGF)" /note="Predicted" /db_xref="GOA:A8WP20" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR006643" /db_xref="InterPro:IPR031847" /db_xref="InterPro:IPR036034" /db_xref="UniProtKB/TrEMBL:A8WP20" /protein_id="CAP22226.1" /translation="MTYETISVRMNRSDHNIRWGFSVRQQADGLIIDRVETESLSDKA GVKHNDKVDQINGRSTRGLDASTANRLIDDSFNEVRLSLQRFVTSHTCLPWTLNEKDN KMVVEEMKPGFGSGFGSGFGSGFGGAHSSFNQGSQFGSHFGTGSGVNRNITNTTNTSS SNHQSSTFHSSSNNTFGNFGGGGGGFSPSSHHNIAIRHSPAPPFSHSLANNNSYSSNI QKSTDNKILPGSANYNPNSNSNYNSTPAGFGSSGYKGGFSNGGAIPAPAPTQAPPSTY SYNNGATNQSYGQGAGGTPLNQMTFINTAPSGGIGAQGGLSPSKVFYHSPSGRNRQDL SPGASVHHLQYNSPMNLYSSEATAEQLYQQTGLTPEGPVPHDKTPAYLTSETRKLIEE EARGRFQRGKSPSSQSSCFKRIAHAVGADN" CDS join(119770..119955,120089..120420,120467..120562, 120621..121169,121672..121815,121868..122111) /gene="Cbr-cyp-13A5" /locus_tag="CBG_01034" /standard_name="CBG01034" /product="Protein CBR-CYP-13A5" /note="C. briggsae CBR-CYP-13A5 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR017972 (Cytochrome P450, conserved site), IPR002401 (Cytochrome P450, E-class, group I), IPR002402 (Cytochrome P450, E-class, group II), IPR002403 (Cytochrome P450, E-class, group IV)" /note="Predicted" /db_xref="GOA:A8WP21" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR017972" /db_xref="InterPro:IPR036396" /db_xref="UniProtKB/TrEMBL:A8WP21" /protein_id="CAP22227.2" /translation="MSFSLLLISTIFIGFLSYYVWIWSYWIRKGVKGPRGIPFSGIMH RFQDYDYPFWRVMMDWTKEYGPIYGITEGVEKTLVVSDPEFVHEVFVTQFDNFYGRKL NPLQGDPNKNKRAHLVSTQGHRWKRLRTLSSPTFSNKNLKKIMKTVDDSVAELMRHLE KGCAGGKTVDMLEYYQEFTIDIIGKIAMGQTQSLMFENPMLPKVKYLSMDVNTLSLHL RCSHFSEPCFVSMFPSIQPASDIMNIIEKAVKARIDQRKTDEKLGIEVSGEPQDFIDL FLDARADVDFFEQEAKDDFGKTQITKVDKHLTFDETVGQLFVFLLAGYDTTALSLSYS SFLLATHPEVQRKCQEEVDRECSDPEVTFDHLSKLKYMDWVIKEALRFYPLASIVHNR KCMKATTVCGVEIEEGTNVQVDTWTMHKDPNIWGDDVNEFKPERWESGDEQFIQKGGY LPFGMGPRICIGMRLALMEEKMLLTQILKKYTFETTSETVIPLKLVGRSTTAPSSVNL KLRPRHSD" CDS join(123524..123748,124387..124715,124761..124866, 124914..125163,125325..125460,125603..125984) /gene="Cbr-cyp-13A2" /locus_tag="CBG_01033" /standard_name="CBG01033" /product="Protein CBR-CYP-13A2" /note="C. briggsae CBR-CYP-13A2 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR017972 (Cytochrome P450, conserved site), IPR002401 (Cytochrome P450, E-class, group I), IPR002402 (Cytochrome P450, E-class, group II)" /note="Predicted" /db_xref="GOA:A8WP22" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR017972" /db_xref="InterPro:IPR036396" /db_xref="UniProtKB/TrEMBL:A8WP22" /protein_id="CAP22228.2" /translation="MLQRPILDTMFELFSKLFTLAVLGIIGVVTYYLWIWTYWMRRGV KGPRGKPFVGVLNVLLDHEKPGLLKLGEWTEEYGKVYGYTDGNQRTLVVSDPSMVHEI FVKQFDNFYGRKLNPIQGNPDQDERVHLLSAQGFRWKRLRTISSVSFSNGSLRKIMST VEDSALDFMKHMEEKSANGEIDMLDAYQEYTMDVIARVAIGQRDNKMFSDQNELLKIV RQIFGGSRKYLMLICQVFPVVGQAIRSLTFKYPKIAPFKLYLMIKKAVMERKEQRDRE LENGVEPGEPQDFIDMFLDAKSDDVDFKVQKKVREEVDAEFGDSEIEFEKLGRLKYMD CVIKEALRLYPLASISNSRKCMHTTTVNGVEIEAGVYVQMDTWTLQRDPAIWGDDAMD FKPERWESAKQSEYKGAYIPFGLGPRQCIGMRLAVMEQKVLLTHILKKYSFETGPSTS IPLKLVGSATTSPENVFVQLKPRNQ" CDS complement(join(127056..127225,127538..127596, 127664..127809)) /gene="CBG01032" /locus_tag="CBG_01032" /standard_name="CBG01032" /product="Protein CBG01032" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP23" /protein_id="CAP22229.1" /translation="MGSSFMVLMSLVLLNCATTSVAAQEVGTKSKQLESLVEVLRCFK SLKESGQRTYVSYVGNTMRLFDDNGREVSCDAEKQLEIRQRSDRRCIFSPIHCLFDRR LQTAKMFRNVGNSRMFGENRRK" CDS complement(join(130379..130616,130659..130802, 130847..131103,131157..131456,131500..131599, 131642..131973,132029..132164,132762..132920, 132968..133239,133285..133448,133492..133704, 133744..133866,134316..134445,134496..134657, 134698..134790)) /gene="CBG01031" /locus_tag="CBG_01031" /standard_name="CBG01031" /product="Protein CBG01031" /note="contains similarity to Pfam domains PF00135 (Carboxylesterase family) (2), PF00067 (Cytochrome P450) contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR017972 (Cytochrome P450, conserved site), IPR002401 (Cytochrome P450, E-class, group I), IPR002402 (Cytochrome P450, E-class, group II), IPR002403 (Cytochrome P450, E-class, group IV), IPR002018 (Carboxylesterase, type B)" /note="Predicted" /db_xref="GOA:A8WP24" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002018" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR017972" /db_xref="InterPro:IPR029058" /db_xref="InterPro:IPR036396" /db_xref="UniProtKB/TrEMBL:A8WP24" /protein_id="CAP22230.2" /translation="MGGFLSHLKPEKSVEVLNATCGPVRGNIYRHDEKVVNGYLGIPY AQSSAKEKRFKKPLPVDTWTDPLDCYKYGPICPQSGDKISTLLPPGYRDIDEARGLNL NVFAPSWKSEEFVSFFQILIKDGHKDELFHRYMPMSGSAWSDFAIRPKGVEAEVCKNF ARHHGYSGEDSKSLLAWYKMQDISKFLETTGVNKSNASGAAYFGPVFDGDFFPKPFDQ LQRDAPKLEVLTTVNEYEGLGFLMMYPNRKHNIEIVADVFGSDVVLHPKEVQKKLYDF YMGNVKLEDSKAIELKMIEFISDSWFNFPALETVRQATKAGNTAYLASFDYYNMESRD PYADWFPFKAANHNSELKYMLGEGMGKFDPVEGEFEMIELMGKLVTNFAKYGNPNGIT GPQLWEKYTLNKPLSYFRIDLPKCEMRDNFQNGRLKIYDEINESGENYYLWQWTYWVR RGVPGPLGYPVIGSFLNSLDHSFPGPLQVKEWTKKYGSTFGFTEGLMKTLVISDPELV DEVFVKQYDNFYGRKRNPISGDSEKEKRTNIFSAQGFRWKRLRTISSPTFSNNNLRKL NLTVEECALEIIKHTEEKTAGGAQIDMLRFYQEFTLDVIGRISMGQSESLMFNNPIFP IVRKLFQGSGYYFRLMLIGGVLPPFLVEIVRQIVRRLKMGTFGKINGITLEAVQKRIK QREEDEKAGVEPGEPEDFIDLFLDAKAGDVEHFEEDNGDFKKSTSYTNRQLTTDEIVG QCTVFLIAGFDTTALSLSYSTYLLATHPEVQKKLQEEVDRECPGSGITFDQLSKLKYL ECVMKETLRLYPLGTFANSRKCMRTTKLGDIEVEAGTMVQVDTWTLQTNSKIWGEDAG EFKPERWENGDEQFIQKGAYIPFGLGPRQCIGMRLAYMEEKMLLAHILRRYTFQTGTK TEIPLMLIGTTTTQPASVWMHLTPRL" CDS complement(join(135276..135519,135564..135707, 135753..136403,136451..136543,136591..136965, 137015..137064)) /gene="Cbr-cyp-13A12" /locus_tag="CBG_01029" /standard_name="CBG01029" /product="Protein CBR-CYP-13A12" /note="C. briggsae CBR-CYP-13A12 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR017972 (Cytochrome P450, conserved site), IPR002401 (Cytochrome P450, E-class, group I), IPR002402 (Cytochrome P450, E-class, group II), IPR002403 (Cytochrome P450, E-class, group IV)" /note="Predicted" /db_xref="GOA:A8WP26" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR017972" /db_xref="InterPro:IPR036396" /db_xref="UniProtKB/TrEMBL:A8WP26" /protein_id="CAP22232.1" /translation="MINIYLAIITAVVGVLSYYLWTWTYWRRRGISGPPGYPLIGCAL EMLDSENPPYLQLKEWTKEYGKVYGITEGMMKILVISDPALVEEVFVKQYDNFYGRKL YPIQGDPNKDKLVNLFASQGHRWKRLRTISSPTFSNNSLRKLKTTVEDCALELLRHIE TQTAGGKPIDLLTFYQEFTLDVIGRIAMGQTDSQMFQNPMLKYVKAVFGEPRKFIFLS GAIVPWTGPLLRKFFMSLPNIFKNPAIHIIRQVAQAVENRIAQRATDEKAGIEPGEPQ DFIDLFLDAKSDDVEIENNEDFTKAGIKVTRQLTKDEIVGQCFVFLIAGFDTTALSLS YSSFLLATHPEVQKKLQEEIDRECPDPEITFDQLSKLKYLECVVKETLRKYPLGAMAN ARRCMRSTKIGNYEIEEGIDILCDTWTLHADKNIWGEDAKEFKPERWESGDEQFFQKG GYIPFGLGPRQCIGMRLAYMEEKLLLCHILRKYTLETCSKTQIPLKLIGSRTTSPETV WLNLKPREDI" CDS join(138606..139108,139159..139258,139305..139601, 139651..139907,139950..140093,140147..140390) /gene="Cbr-cyp-13A8" /locus_tag="CBG_01028" /standard_name="CBG01028" /product="Protein CBR-CYP-13A8" /note="C. briggsae CBR-CYP-13A8 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR017972 (Cytochrome P450, conserved site), IPR002401 (Cytochrome P450, E-class, group I), IPR002402 (Cytochrome P450, E-class, group II), IPR002403 (Cytochrome P450, E-class, group IV)" /note="Predicted" /db_xref="GOA:A8WP27" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR017972" /db_xref="InterPro:IPR036396" /db_xref="UniProtKB/TrEMBL:A8WP27" /protein_id="CAP22233.2" /translation="MFFFLIFVAISTYYIYHWTFWKRRGVPGPWGIPILGKSGVMLDD RSAPPLLIQEWTKKYGKVYGFTEGMQKVMVISDPDMVQEVFVKQYDNFFGRKVNPIQG DPDKDKDVPLVGAQGFRWKRLRTISAPAFTNSSIKKVMPRIENSVQEFLKHLEQNGEN GKPVNMHLYFQEYTMDVIMRIAMGQPESRMFKNPMLYDCKGFFENSRWPVWMFSGAFP FAVKGLRYLFLKLGKFGAGPFIRVQKQVTDAVNDRIAQREADRQQEMEPGEPQDFIDF FLDAQADVDFFGETNDEYQKSTIYNNRKLTMQEIITNCFLFVVAGFDTTAISLSYVAY FLSLNPRVQRKLQEEVDRECRDSEITFEQLSKLKYMENTIKEALRVFPMAAFANSRRC MRTTKIGDTVVEEGVDILVDTWTLHHDKKVWGEDADEFKPERWESPLNPHQSFMAFGA GPRVCLGVRLAYLEQKVLLAHVLRKYSFVANTQTQVPMKLVGRATSRPQSLILSVEPR LPDPRV" CDS join(140688..140867,140913..141244,141294..141393, 141439..141989,142041..142184,142260..142509) /gene="Cbr-cyp-13A6" /locus_tag="CBG_01027" /standard_name="CBG01027" /product="Protein CBR-CYP-13A6" /note="C. briggsae CBR-CYP-13A6 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR017972 (Cytochrome P450, conserved site), IPR002401 (Cytochrome P450, E-class, group I), IPR002402 (Cytochrome P450, E-class, group II)" /note="Predicted" /db_xref="GOA:A8WP28" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR017972" /db_xref="InterPro:IPR036396" /db_xref="UniProtKB/TrEMBL:A8WP28" /protein_id="CAP22234.1" /translation="MILVLISAILLGVFTYSVWIWSYFIRKGIKGPRGFPGIGMLLQT LDHENPPFLKYRQWTKQYGPVWGFTEGPQQTMVISEPEMVNEIFNKQFDNFYGRKLRP IIGDPEKDKRVNMFAAQGKRWKRLRTMSSPSFSNNSLRKVKSTVQECGSEILWNIERK VATGEEIDMLLFYQEYTLGVISRIALGQSESKMFQNPLLLKVKSIFNGSWHLFLLTGL FPPLASVIRKMSKSLPADFVPAFKIFDLIETAVEARMAQRESDIKNGIEPGEPQDFID LFLDARTDADFLGEKNEDFSKTAVMKVNKELTFDEIVGQCFVFLAAGFDTTALSLSYA TFLLATHPDVQKRLQEEVDNECPDPEISFDQLSKLKYMECVMKEALRLYPLGVTANTR KCMRETVIDGVIFEEGMNIQVDTWTLHHNKSIWGDDVEDFKPERWENSACEHLEHNGS YIPFGSGPRQCIGMRLAQIEQKIILAQILKEYSFRTCKNTQIPLKLVGKLTLSPENVI VKLEPRKDLL" CDS complement(join(143309..143604,143656..144045, 144260..144356,144415..144521,144574..144622)) /gene="Cbr-eyg-1" /locus_tag="CBG_01026" /standard_name="CBG01026" /product="Protein CBR-EYG-1" /note="C. briggsae CBR-EYG-1 protein; contains similarity to Pfam domains PF00046 (Homeobox domain) , PF00292 ('Paired box' domain) , PF05920 (Homeobox KN domain) contains similarity to Interpro domains IPR001523 (Paired box protein, N-terminal), IPR008422 (Homeobox KN domain), IPR017970 (Homeobox, conserved site), IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:A8WP29" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR001523" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="InterPro:IPR036388" /db_xref="UniProtKB/TrEMBL:A8WP29" /protein_id="CAP22235.1" /translation="MASQQPLSQEQLLHFWGAHNTIGKMTRRTSQHESAVKHSSNNSS GGAGTKPKVATPQVVAKIEQYKRDNPTIFAWEIREKLINEEVCTTPPSVSSINRILRT RAAERAAEELQMILSAQHIARPQIRPQEVRLPPPFPFPLPLVWPGLLPNPAQLSFLLN SRALAPNLQSGVGVPGNTPGSSGQLSIDSNPSLSEDDSVLGANSRRLSRSTFSNDQLQ SLEEVFLREPYPSQTERADLVKRTGLPEARIQVWFSNRRAKWRKTNANDRDELKAERS ETDDAMSNCSQSPSPGGQGSSSEEKRKAFTLFKPYE" CDS join(146983..147022,147068..147126,147439..147474, 147529..147816,147862..148110) /gene="CBG01025" /locus_tag="CBG_01025" /standard_name="CBG01025" /product="Protein CBG01025" /note="contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase domain), IPR006186 (Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase)" /note="Predicted" /db_xref="GOA:A8WP30" /db_xref="InterPro:IPR004843" /db_xref="InterPro:IPR006186" /db_xref="InterPro:IPR029052" /db_xref="UniProtKB/TrEMBL:A8WP30" /protein_id="CAP22236.2" /translation="MANIPSFIDRLLSVNDTANPSLTHCIKEAEIDDRRYSLSLYNAF QDLFNGLPLCAMISGRIFCMHGGLSPQLESWKQLAAIKRPFDPPNKSIAMDLLWADPE NNMNGWAKNSRGVSYIFGADVVKDFTDKMNIDLIARGHQVVQDGYEFFAGKRLVTIFS APKYCGEFDNNAGVMIVDERLIISFDILKPAIREVTIRARGTSKNASTRSMLVSSRGP KSKMG" CDS join(148499..148634,148677..149018,149061..149176, 149240..149413,149464..150042) /gene="CBG01024" /locus_tag="CBG_01024" /standard_name="CBG01024" /product="Protein CBG01024" /note="Predicted" /db_xref="GOA:A8WP31" /db_xref="InterPro:IPR000048" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8WP31" /protein_id="CAP22237.2" /translation="MITKLAVGTCRDLIFDIYINLINMYKTADRMVSIEGSQTNLKCL LVAAKCLSSFFDTVFTKLPQQQIEDGFNKFFISHNLTEYDVSLSATWRIINNAAISHH EHLLEVKKSCQEQKAFRESFLKTQTDFDIDFEDHEADQETQLLSIEDAVLIIQKLERK YQAISRRNYVRFVRERAAELHGQKVEIDATQAAIRIQARTRGYFARKWVREMRERELN ILNMTPESYIRKRCTERDRKQKASAVGEGERIEQVEEFPGDLETALELLKTDFFFATS ELPDPSKNTKLPTQTNPDTVYRDACFRGIVSPNSQTELSELISQREICKIEGRLFLFD LRTFLTLTICIPLSLATWHKPKDTKVGCRWLLMSGAPDSGKTTWARATARASHITHVH ISKNVVNMGKRRIYTVIKKLAKIERRILISVDRIDVLRKDPKNKGYTHRQVGQEDF" CDS complement(join(150653..150691,150735..150805, 150846..151044,151459..151626,151775..152064, 152109..152184,152232..152337,152382..152566)) /gene="Cbr-arrd-5" /locus_tag="CBG_01023" /standard_name="CBG01023" /product="Protein CBR-ARRD-5" /note="C. briggsae CBR-ARRD-5 protein; contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR011022 (Arrestin C-terminal-like domain), IPR011021 (Arrestin-like, N-terminal)" /note="Predicted" /db_xref="InterPro:IPR011021" /db_xref="InterPro:IPR011022" /db_xref="InterPro:IPR014752" /db_xref="InterPro:IPR014756" /db_xref="UniProtKB/TrEMBL:A8WP32" /protein_id="CAP22238.1" /translation="MASCLIEFDKNPIVFSPGDKVNGNVKMQISDEDFKARKVRMEMI GKAYTYWEGNVKNNHKIKNSGDIARVRHNCADHKGKIVYCRFETIVWKSDGSKHEMPS GEHIFPFSFQLPHWAPPSFEGDLGFIRYFIKVEIDRPWKFDDKFITCFTVLPSIDLSL IPNSQLPSKKHTCEEFGAVLWKGGLVKMEIRLPKQGYVCGESIPVKILVDNKTSKSFK KISLKLLQRITYTGFRDGFVNSQSHPCMGNEKEKVTYATRLNAQIRVEERKILEEIMD VRIEKNDKIDMEKAIIVPPLPPSTKTCEIIDVEYFLKAKMSTLGTLKSAVKLELPFII GTVPTDKDRSFDYKKSVFGYAATSLKNRDVQKYAPLYPVYKFI" CDS complement(join(155375..155908,155954..156226, 156275..156499)) /gene="CBG01022" /locus_tag="CBG_01022" /standard_name="CBG01022" /product="Protein CBG01022" /note="contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR011022 (Arrestin C-terminal-like domain), IPR011021 (Arrestin-like, N-terminal)" /note="Predicted" /db_xref="InterPro:IPR011021" /db_xref="InterPro:IPR011022" /db_xref="InterPro:IPR014752" /db_xref="InterPro:IPR014756" /db_xref="UniProtKB/TrEMBL:A8WP33" /protein_id="CAP22239.1" /translation="MGLSNITINFHEPGKVYLPGDKVGVTVTVVNDKPMKARSVKMII EGFSETEKFLSWNHHLVYRQTKLLWVSDSSKNQMPVGTFDYEFVFKLPDTIAPTLNIK NGRNTHRVSVQVDRPWREISRVDKELTVSKNLGKEYLPCYNKTMVWEQNIQSGLIFSD GTIQAKFVTPSQVFKAGQTFDTEVTLNNTSGNAIKSVQYTLFRHTHFHKKWQPTPCSN SYKCHLHNSEQFFTYGRYGKGEKHKTPVAPYTEGKFKIPFTIPAEATTPSFASGMMTH GYLLVAHVQVKGAITLSSYLRIYIGDVVENEDVQRKTEKREVAEKKTTKKEEITEEEE APPSYSSCT" CDS complement(join(157906..158046,158161..158269, 158312..158415)) /gene="CBG01021" /locus_tag="CBG_01021" /standard_name="CBG01021" /product="Protein CBG01021" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP34" /protein_id="CAP22240.1" /translation="MASRKNKPIVQVQGYAMRFKKMNKNGTELFYCVERERRARCDAA YHFDRMNNTFTVKNQHARHDEDFVRSEVSRNRKLTNALKDGRLIKTLINQPIPPIMPL TGLNLLDTISDAHYV" CDS complement(join(160563..161063,161109..161378, 161425..161658)) /gene="CBG01020" /locus_tag="CBG_01020" /standard_name="CBG01020" /product="Protein CBG01020" /note="contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR011022 (Arrestin C-terminal-like domain), IPR011021 (Arrestin-like, N-terminal)" /note="Predicted" /db_xref="InterPro:IPR011021" /db_xref="InterPro:IPR011022" /db_xref="InterPro:IPR014752" /db_xref="InterPro:IPR014756" /db_xref="UniProtKB/TrEMBL:A8WP35" /protein_id="CAP22241.2" /translation="MSIASTVINIDQHDKIFYPGDEVTGTVLLEVTRPLEARSIVLSI RGKSKTANINLFDNSCVKYHFKKSHLAWVPKQGETIIPAGEHLFNFAITLPADCLPTF HGLFGKNDYKIKMVIDRPWKSNIKAEKEFLVTKKLDLPMRMSSSNWFFKVDLQSGVFF SNGPVTMKVSISTLVFLPGQTVDLHFQVANNSSTEISRIFAKLYQRTHYHFRNQHTPC KEFNPDGCPLSRFQQTTDREKLRNAEKMEVSLAPYSEESYIMPFTFPENIVTPSFYSG LMLHGYVMEFGFRSKGSIDRAMMCTFYMGEMEEEHSEDCPNRHGKEDAPPTYEEILRD " CDS complement(join(163631..163707,163857..163986)) /gene="CBG25445" /locus_tag="CBG_25445" /standard_name="CBG25445" /product="Protein CBG25445" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IER6" /protein_id="CAR98396.1" /translation="MPFTLTHENICFSNPAAKYAPGDKLEGLIELNFQKDYNVLYMQR HYACRETFVPLLVHNSRTLSTNIP" CDS join(166641..166801,166852..167360,167405..167577, 167657..167833,167881..168052,168095..168195, 168365..168510,168556..168679) /gene="CBG01018" /locus_tag="CBG_01018" /standard_name="CBG01018" /product="Protein CBG01018" /note="contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domain IPR011701 (Major facilitator superfamily)" /note="Predicted" /db_xref="GOA:A8WP36" /db_xref="InterPro:IPR011701" /db_xref="InterPro:IPR020846" /db_xref="InterPro:IPR036259" /db_xref="UniProtKB/TrEMBL:A8WP36" /protein_id="CAP22242.2" /translation="MSASSETTVTSNSSSEVTIGMNHDEEERRYGCLGGNRYIVLVIA LLFLSFMLSSIICYNASYVSMVNLHSSPYWEEFISSNKSIDEVNWNDPNLPLSERRFA FDTAQKSLGFAAGFLGAIAAVVPMSRLTARFGVHKVMTISGVFGTVLVIITPIVVSWS FPVFVILRALQGITLANLFTTAGVVVNEWAAVNEKGLFISVLSAHVEVGAVFTMPVSG ALATSAGWPWVFYLHGAILAALTILWAVYYRDRAVKHPFVQRKEWRKISFGKKLNQTG KGSNETPIRKIVSSIVIWGVWIAVIGNFLVSQFSISYAPIYLRGVIGCSPTEAGLLTL IPMACLLVIKFSTGFFSDRIKSISDLTKMKMFNSCALLGSSIFFIVLACSSPGGSKVL DVILLSIPMALLGFSSGGYSKCAVMVSGQYSPFVMSIVQIIACSSLMAGSFLVPALTP TDSFSEWQRVFMVYGAVLAITNTIFIVFARAEPAKWSQQKGDLTLAEAVMGSEQKPVE AVTDPEMGVQRI" CDS complement(join(168839..169147,169483..169704)) /gene="CBG25446" /locus_tag="CBG_25446" /standard_name="CBG25446" /product="Protein CBG25446" /note="contains similarity to Pfam domain PF00339 Arrestin (or S-antigen), N-terminal domain contains similarity to Interpro domain IPR011021 (Arrestin-like, N-terminal)" /note="Predicted" /db_xref="InterPro:IPR011021" /db_xref="InterPro:IPR014752" /db_xref="InterPro:IPR014756" /db_xref="UniProtKB/TrEMBL:B6IER7" /protein_id="CAR98397.1" /translation="MTECLIHYDRDVYHAGDSVTGVAILTITKDVRARNVKVICIAEK GFIPRKARGGTRVLPMFEDYIVPWKAENGFNKITVGEYRFPFNFQLPQNSHNSYYHRG DGYMQYYVNVKVNRPLRWDFAKRKLFRVVSPPTNSPSIFPSTTAQPPRYTSTASLHQP PRYSSVDGTPPPAYQA" CDS complement(join(171135..171893,172096..172350)) /gene="Cbr-arrd-2" /locus_tag="CBG_01016" /standard_name="CBG01016" /product="Protein CBR-ARRD-2" /note="C. briggsae CBR-ARRD-2 protein; contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR011022 (Arrestin C-terminal-like domain), IPR011021 (Arrestin-like, N-terminal)" /note="Predicted" /db_xref="InterPro:IPR011021" /db_xref="InterPro:IPR011022" /db_xref="InterPro:IPR014752" /db_xref="InterPro:IPR014756" /db_xref="UniProtKB/TrEMBL:A8WP37" /protein_id="CAP22243.1" /translation="MFANLVPVPPVPPTTVLDIELSYNSKKYFPGETLTGRVILQTSE PIRARYLKISWEGSTSCEFGGMKRQVHFSNCVIPWIAETGDSVIPSGTHKFRFSFCLP SDAPPSFCGYYGSTTYSIYVKLDRVWKWNMETQKTFKVVPKMCTAAMAPDMMVPTKFV MYKNSGSIFKDGVFSIKLNFQKRSFMPGESVEVIVTMENNSSKPIKSMQFELIRQSHF HSQHQKDFCSLNNCLKDCPVPPVYTRNCEKVLNSRVYPCNVPPGETEQVMVAVDLPRG IPATFESAMISMGYLLGFSLKNGSWTNNKIDCNARIVIGNEERIGVSGGKNAPLAPPP YSP" CDS complement(join(172861..172977,173070..173117)) /gene="CBG01015" /locus_tag="CBG_01015" /standard_name="CBG01015" /product="Protein CBG01015" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP38" /protein_id="CAP22244.1" /translation="MQSKSPVVDAKEQMKKKTPEELAQMAIVNRAFSAESSDDPPPLL QKRSDRHWSH" CDS join(173369..173521,173565..174098,174146..174294, 174371..174495,174545..174648,174698..175015, 175067..175219) /gene="CBG01014" /locus_tag="CBG_01014" /standard_name="CBG01014" /product="Protein CBG01014" /note="Predicted" /db_xref="InterPro:IPR040264" /db_xref="UniProtKB/TrEMBL:A8WP39" /protein_id="CAP22245.1" /translation="MSRSENLKENKKQPKDQTKSKTQGSSVMGNLKKLPTSEAVPLKL VKSPKFKRKKKASETQLTSEMISESTDVTDVEEDPTETMGFSPLYLKVVPPNHYISIS VQLKQVMLFNIFKYITVNQNMVITKVDRCLMTEFMPGDQISGVNGKSVWSLEDMCERG SGTQHTSVVTVIRVWNMRCWTDDQLKTLVEKYTEPEAGKQYFLVRMYCKSGGRGGMKL GSTWKNVTVKNVRANTAVSTALLSGDEVYGVNNKFLYGINKRAMIKMAYELVEKSTDG FADIMASRRIGARSSPAPSLEADLGKKYPDCAVGVRRGNKVVRKDPEQLMCLPFPADA LEIALRELTFLQEWVKPDWENLPCDKGESLLCELPRKSLMMHPISLTPCTSPRPSAKT PRDSQALSPSSVLPVTEYSTSLPVKTLFLRPKNFEKSIEQPPPPTSSQKTKKIEDMTE TDHLMSRVKITNAPEQSNITSDIPEEEELKKCNEKAGLMTYFKNKFGPGKTSLQNNQA ERK" CDS complement(join(175486..175596,175649..175966, 176013..176116,176162..176286,176338..176498, 176548..177150,178302..178508,178555..178710)) /gene="CBG01013" /locus_tag="CBG_01013" /standard_name="CBG01013" /product="Protein CBG01013" /note="Predicted" /db_xref="GOA:A8WP40" /db_xref="InterPro:IPR040264" /db_xref="UniProtKB/TrEMBL:A8WP40" /protein_id="CAP22246.1" /translation="MVREGIELLSEYVPQTFLFTLIFLLTSSAIFMLCSGKKDSNRPP SSNSETSKHSSLQKPVLSNAPNDVIPPAQPTRNVGEPVKPPTTNLQALKEELKEEKED KKASSPPPPPPKKSDRKSIHKKRASQDKDVNLQTLEQRSEIFTSDVSEGGDDKEENTA SIKKNYSVLNTVSNKAFTQLSAAPTPPLTHFLPVVIQVSAGTFERFFQYVTVNRNLVI TKVDRSLIHHFMPGDQITIVDGTAHWTIESLTSYMKGSWIRGKPAVAITVIRVWNINC ITKAQYDLISMLIEDRVHYFRVKLYSHTPNSGMVLCSEKKRILVKSLRAKTPASTGFI VGDQILGVNNEMYDVKKEKMGAIKKKIREAVQTSFEKDGCVEVIACRLIGARSSPVPS LDAELAEKFAGYAIGVEKGIHVEKKRDENTNLPFEADALEIALRELTTWRCYEGRNGF ETPICDKGPSLLSDKGTHPATPGGQNDQTATSSPGTSTPSSSNTQVSVMAPIPIVRTT SNTVMAEKLAVEKPTNKGDKPPSTPIAQTPRKRSVFRKEIENPQTQVTFKDAPEINKI TSDVPEENEVKKCDARSGMIAYFKNIMK" CDS join(179717..179892,179938..180043,180087..180249, 180308..180417,180465..181121,181175..181282) /gene="Cbr-arrd-7" /locus_tag="CBG_01012" /standard_name="CBG01012" /product="Protein CBR-ARRD-7" /note="C. briggsae CBR-ARRD-7 protein; contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR011022 (Arrestin C-terminal-like domain), IPR011021 (Arrestin-like, N-terminal)" /note="Predicted" /db_xref="InterPro:IPR011021" /db_xref="InterPro:IPR011022" /db_xref="InterPro:IPR014752" /db_xref="InterPro:IPR014756" /db_xref="UniProtKB/TrEMBL:A8WP41" /protein_id="CAP22247.1" /translation="MDDFRIEYDAPNSVYFPGQPVTGKVVIQNREWIKARFLKICIHG GAHTSWSESERRYRTDARGNRESYTESVHYAATVNYLTGESIAWKSADGQDRLPAGTN VFPFAFAMPVNCPPSYEGCHGHIRYSVHVELDRPWKFNKKSRKCFSVVPMYDLNITPT AINPMVNSTSKNTGFILKKGLVSMTVSLPKRGYVAGEILPITINIENNSKSPVVAVRS KMTQLSHFHASHGSAMNVTHHTHHKNDEKCVAESRRNFDVAPHSRGQVVLSMKIPAIV PSFTCPIIDVDYCISVKLDTASTFGGTLKVEFPLIIGTIPIRQLAPTGAASAPAVMPT VSPTAPPYPVIGGGVPGASVYPTAPSAPPASPIGPGGVGFGAPIGPPPMASAPPSYEE SMQGVTKVEDSEPFAPRYPVYNNLQETSPLPPYTPGAAPPLPSKTGF" CDS join(181924..182154,182200..182365,182413..182510, 182559..183020) /gene="Cbr-arrd-3" /locus_tag="CBG_01011" /standard_name="CBG01011" /product="Protein CBR-ARRD-3" /note="C. briggsae CBR-ARRD-3 protein; contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR011022 (Arrestin C-terminal-like domain), IPR011021 (Arrestin-like, N-terminal)" /note="Predicted" /db_xref="InterPro:IPR011021" /db_xref="InterPro:IPR011022" /db_xref="InterPro:IPR014752" /db_xref="InterPro:IPR014756" /db_xref="UniProtKB/TrEMBL:A8WP42" /protein_id="CAP22248.1" /translation="MEKLQIHLDNSSAAYFPGRNVTGKITFNIHKPLSFSIDARILGE AVTFWKHWNTTFREHIQFTSKNDHLDELTQLQKYESVAPGAHTLNFSFRIPQESPPSF EGKFGSIRYKIHVAVSRSEKKKMESEQTISVMPYLNLNSIPRGLLPLEHNKSIFYLSK EIEVNVKIHQRGFIAGERIPIEMTIINKTRIKTIPIFLMLIQVTHFEAQQKSGHIFKE NLKFHRNPIEDNISEVKKDIKMNSTCENLNFELLIPVSTRSSFKTKLIQLAYKLLISV GNDKNVDFELPIIIGTVSVQPEPPSYKRAMERSEDCPPNYNK" CDS join(184667..184839,184884..185007,185058..185223, 185269..185879,185923..186000) /gene="Cbr-arrd-8" /locus_tag="CBG_01010" /standard_name="CBG01010" /product="Protein CBR-ARRD-8" /note="C. briggsae CBR-ARRD-8 protein; contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR011022 (Arrestin C-terminal-like domain), IPR011021 (Arrestin-like, N-terminal)" /note="Predicted" /db_xref="InterPro:IPR011021" /db_xref="InterPro:IPR011022" /db_xref="InterPro:IPR014752" /db_xref="InterPro:IPR014756" /db_xref="UniProtKB/TrEMBL:A8WP43" /protein_id="CAP22249.1" /translation="MEPTFSIDFDEQYYVPGNCVRGSLTIRNQSAIHALSLKICIHGE IQTYWTQLEKKRHLKSGHPVSHCHHHTKPPENKTFKSHINILEGVSQPWSSIDNPSNR IPIGVNIFPFVFQLPFSCPPSFEGTHGCVRYTVHVELNRPWRLDVEARRAFTVLPIID LTAIPKIRNPVMDHACKHSGFLGSKEVKIKVQLPKSGFIPGEFIPIAISIHNHTKKPL YYLKAQLIQHVHYQAQQENSHFNSDEHCHKHCDHKTAETKMSEVEKSFEVNCCSEGII QVALVLPNPLIPSFKTNIIEVDYCVTVEVEKDKKLRVEFPITVGTNPVGHVMGRADIG NRLTALSVTQPDLNLLIEPPPEYQDRVEVTMASAPPPEYDENSNGITNV" CDS join(194891..195010,196788..197065,198288..198449, 200062..200176,200659..200847,201474..201580, 201717..202212,202264..202355,202475..202485, 202504..202769) /gene="Cbr-egl-43" /locus_tag="CBG_01007" /standard_name="CBG01007" /product="Protein CBR-EGL-43" /note="C. briggsae CBR-EGL-43 protein; contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:A8WP44" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR036236" /db_xref="UniProtKB/TrEMBL:A8WP44" /protein_id="CAP22250.2" /translation="MSLDTDFLKHVEVQEDDMHGAVLVAVTPISSGRNIGVIDKSTPN NSNEILLLNLIKEADVGEDANICMTQVEYKVSQFLGGKFKMKYFQTHFKTSKLIDIGE RLLLQRLSEDECDEEDNDDLENLLRLKEDDRPGSAQSFNKSSSEEASLTAIDEYVREQ GEIAPDQSPSDGAHKCGVCPKSFSSASGLKQHSHIHCSLKPFRCHLCSKSYTQFSNLC RHRRVHSEGYTCSTCNTAMPSQAALTKHRPICEVTNMYKPLMAQFAGLTVPSGMGAMA QCWPQFMQMAAQVPHFPLLLANSDFFKVMQQQQQNQPCASPDAECSSSGHASESSPTT TEPVDLSATPKPPSTSEVESKSDDGEDRDSIGDSGNDDDDDSESGVIDELIASSSSKK SNPHSITAILSASQPQPSLNPAQLLAMFQRPFGYNPSMSNGHAFLGAMNGGHKSSSSP SSNGLGKDKYTCKFCQKVFPRSANLTRHLRTHTGEQPYKCQYCERSFSISSNLQRHVR NIHNKVSNTNPFRTLLIIVKTREVCTIWSQHLLLLPLPILLHPFFSITIFQERPFRCR KCERCFGQQTNLDRHLKKHEMLLQQRADPYLPDIPQLAAALSRIV" CDS complement(join(203723..203983,205866..205928, 207610..207740,207939..207993)) /gene="CBG01006" /locus_tag="CBG_01006" /standard_name="CBG01006" /product="Protein CBG01006" /note="contains similarity to Pfam domain PF02223 Thymidylate kinase contains similarity to Interpro domain IPR018094 (Thymidylate kinase)" /note="Predicted" /db_xref="GOA:A8WP45" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR039430" /db_xref="UniProtKB/TrEMBL:A8WP45" /protein_id="CAP22251.2" /translation="MATEQNDQEERGALIVFEDRQSPVGEMIDRYLRGEIDMDEHALH LLFSADRFLKKKMIKQHIVVKIYGKKNEILIIIIVFRPIGLPKPDIVLFFQVSPEVAA SRGGFGNERLETAQLQAEVAKVMPTLRDDAFWKSVNADAALAAVEKEVFQLYTELDRS KPLEVLEKI" CDS complement(join(208439..208540,208592..208835, 208930..209045)) /gene="CBG01005" /locus_tag="CBG_01005" /standard_name="CBG01005" /product="Protein CBG01005" /note="contains similarity to Pfam domain PF10206 Mitochondrial F1F0-ATP synthase, subunit f contains similarity to Interpro domain IPR019344 (Mitochondrial F1-F0 ATP synthase subunit F, predicted)" /note="Predicted" /db_xref="InterPro:IPR019344" /db_xref="UniProtKB/TrEMBL:A8WP46" /protein_id="CAP22252.1" /translation="MSWFRPPPPHTQLRPWVPDAIFIPISRAVERVGVFFYNRVLNKT EIGLFDKRWNKNVHGPYCHWRYYGKLDTKLMDVKLGELPAWIARREKTPSAFYNEFMR NVWRVHNLYYSGPVYNNTVKVIFRFIFAYSFLNWLVKSHRYVDFQKTMYHW" CDS join(209800..209963,210007..210082,210133..210222, 210267..210476,210528..210593) /gene="CBG01004" /locus_tag="CBG_01004" /standard_name="CBG01004" /product="Protein CBG01004" /note="contains similarity to Pfam domain PF05916 GINS complex protein contains similarity to Interpro domains IPR005339 (GINS complex, subunit Psf1), IPR021151 (GINS complex)" /note="Predicted" /db_xref="GOA:Q626F4" /db_xref="InterPro:IPR005339" /db_xref="InterPro:IPR021151" /db_xref="InterPro:IPR036224" /db_xref="UniProtKB/Swiss-Prot:Q626F4" /protein_id="CAP22253.1" /translation="MSSNDQQRGGVADKALQLVMEMKRNPDVLPPYNADLVRQCQKKI DELFHKNAAVVERMRNGLEHDPSLLQPRLAAMCHIRRCMMAYVNERKNRIRSFRWRYG GALPASVRNALCEAEIQFFNEYSSTLARFQSNLGEAGVNLLLHTAPPKTLFVQVRTLE DYGEFETSDGTQVQLTKDSLHSLPRQDCEMLIRQGVLELVH" CDS complement(join(210757..210804,210856..211056, 211106..213988,214034..214245,214355..215435, 215819..216130,216177..216731,217040..217153, 217227..217355,217406..217528)) /gene="CBG01003" /locus_tag="CBG_01003" /standard_name="CBG01003" /product="Protein CBG01003" /note="contains similarity to Interpro domain IPR003006 (Immunoglobulin/major histocompatibility complex, conserved site)" /note="Predicted" /db_xref="GOA:A8WP48" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR041679" /db_xref="UniProtKB/TrEMBL:A8WP48" /protein_id="CAP22254.2" /translation="MYPSKNQIGQKQNHKKFTQNPEPCHFDNWERPSEAYAGTSGTHR IADWSKPWDHESIKYESTEKAKKAFVKSKNYDSESNSDIDDGPSTSEKNNYNEKDVFG KLDDDKEHDWEPKNNSVKLEVNWLPAKRWDESSEDDSEQNDQFSRSLEALKQEEQEEY YNSWDEESNDEEEKIRNPNKKLRDSAPTNKNSAPNNRCIRWDESSEDDSGLNDQYLRD LKAMKQKKHKEYYNSWDEESDDEKRKKRNPDKKLKDLGYTKQKEKQEKIVVSEVQPRL SNFPRFVVPVVGKMPVKKSEVEKSMAKMSFENPEKSELKVERTKADEAKSGDKIGLQN SKTLDIKTQETSKAEKEETKVPRKSLESSKEPKYLKQKKETTQVSENEGTSTIEEKKP GIFSSFLLDRPIFEARSFEDLSQPTTSTATLSNEQVSFENPIGVFMAGISNRRPDRRE RRRLKKQKAEEVKRLPDEEFEELCRLHALETEKNVFSQFYAKKWPRQLRKPKNREISN FKHSEGAEFAAKSYFWDNNWDFDLPELPKPEQMIMPLPTSTPDVYDDFAFYRVLMEKE DKYILVACHANVHGFHRGDLRFLEINSRSRLNRLEGQSVIGSLFLGDIVAVTELARNS EAISPVRDVDVSLVTPDTSCYWIVSKMILYPRNVDKKSPVLFSIVNRMAAIKGENEPM NLNVDNWDMMHADSIYTGLTFRPETLEYHFSKDYQKKKINELVVSARTIRSYPGIYGT IFKFKEGDHREEFKKEMHLNTYTDVSSPETTEPANASSESSSRVPTPIQKPECPKPSY FSAYAYTSNRSESPAYVNPFGVLNSDFIAEVEEKTEEEKIKETEESKELKRLAELEHE KNVFSQYYQKKSGNRRENHRGRKSPQIPKTRKPSSCKHHEAIEFAAKSNLWDNNWDKD LPMLPRSQEIIMPLPASAPAQTEVCGLYRVLMEKNDKYILIACHVNVHGYHRGDLRFL EVNSRSRLKGLSEQSVIGSLFLGDIVAVTELARNSNAQSSVRDVKVSSVTQETRCYWI VSNMILYPRILKPDVTFSFLKNRMAVVKGEDEPMRVNCDDWKTVAPDLIYTGMAFSPI KLDDNFSDDFQRKSKNLLISNVLKISSYPNAFGIIYSYEECSEQNEEFKIGTKAYSDT LEIHKYKRERIVETCSLMGFSAANTIFNGRFDCRAFHMYDVSKEGPTVRFRIENPRNR PTLGLWNNGNKILIGGPTGDTNGTIETVMCNSSHMGWLKIAARLTRECPKDFRFNGDL FVSQREPKDHYYLYDGYFQDMAPESNGRKIIETLYGGKPLELRTGDVGGEYFFPSTPE PIRLNVFQKEYVQMLLDGNPLVIGSSPFGCGKSMTIITAALEIYKRNAERNLVGKTHQ LLITQSNFASVNLIEIARKTCNSGDEKLRNMKFMRFITDKNWNEQPDHGRTKFDMPFL MNKVFKQWAIGELDGNELMTHHTKSMIAHIIRNGTVTVDELCSAARRVFDKYGDCKIP FSGHLTEAFFILYEPDLIMTTADSSKSVCTLLDKKYETNKNECTTVQIDEASQLPEYT LLGLLKTYNKANFGLIGDIHQLPPFCMEELEGRLKEFGIGNTMERAIQNKLFPISNLR YVYRCHPQTTALLSELFYDGKLISGVTESQRNEFMIKRKDFWPNPSYPVMIINHMGTC QRMGTSAQNHSEKDLVSYMVQNLLDQRKYTLKPQDIGVISFYAAQTSLLTEQLRRSGV KCGTVDAFQGSEKEVIILCCTNEHATEFMQCKFRLNVALSRAKQATVIVGNLGYLRKA KYWNAIVKRVEAYGNLRQSDDKNLFNSRQAYVSTSSSYVKNPFYMHDPYNRNAPVESV LNYPTGQRQKNHKRNETRQQQDDNAMSGRWDNNSWSYYNNGYR" CDS join(220350..220436,220484..220772,220817..221370, 221417..221788) /gene="CBG01002" /locus_tag="CBG_01002" /standard_name="CBG01002" /product="Protein CBG01002" /note="contains similarity to Pfam domain PF00328 Histidine phosphatase superfamily (branch 2) contains similarity to Interpro domain IPR000560 (Histidine phosphatase superfamily, clade-2)" /note="Predicted" /db_xref="InterPro:IPR000560" /db_xref="InterPro:IPR029033" /db_xref="InterPro:IPR033379" /db_xref="UniProtKB/TrEMBL:A8WP49" /protein_id="CAP22255.1" /translation="MIKAFSLCLVALGYVAAQSGNIKLEFVQSMWRHGERASQIDLYP IYEKDWIFGGGGLGELTAIGMGEMNDLGRLIRQRYVNTFNFLKPKYASKEVYVRSTDF NRTIISAMSMLYGMFPPSLYDIPNVDYPFTPFKWQPGLTFVPVHVDGPQQCAASQNCP CPRYDLLQARMLALPEVLPKFQQVVLLNRQIGPHYNMTTGIDTFYTYPDTWKCQRAYF NKTMYEKLPWYNEDLYYQSQTVYAPVKGFLEGNFQNSAVSNGLDVALEMKKVRAGVII NELYNRASEKFDCAELGENCTGYLKQLKFYGYSIHDNNVYAVLVALGIPNIADTIDGW PAYAAGIFLEFHRNTQTNERFFKVLYRSNANANIADVTTQVPMCNGAALCPFAALQNL ANTIKPLPDITTVRTYFLKVGFPITWYFSSATLHCKKDVEQ" CDS join(222783..222849,222891..223069,223119..223256) /gene="CBG25447" /locus_tag="CBG_25447" /standard_name="CBG25447" /product="Protein CBG25447" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IER8" /protein_id="CAR98398.1" /translation="MKGVLLLSALLIILAVYSNAQNDCCAWPVSPYVTVATNITIQQF NCSQPISISCQNSGYGIGLFEKVGIAGINGQGTTNFTILAEDEREVTKSFACRHHQWS MVGETNKYDRFACIFKKPKGDWIGF" CDS 223728..224312 /gene="CBG25448" /locus_tag="CBG_25448" /standard_name="CBG25448" /product="Protein CBG25448" /note="Predicted" /db_xref="InterPro:IPR042312" /db_xref="UniProtKB/TrEMBL:B6IER9" /protein_id="CAR98399.1" /translation="MKPVLLSLVVVLTTNIYCQDSSTDASSTTPLDCGYLANSYKNDD YSYDGQCCNPKAVAYMDEEYGSNWREDLADAVSRTTFLFNQRLCDVSSTSSTTAATSS TTELKSSTTNSPTTTTEEINCSWYNRMRGICGASTASTTSPAKSEFKSTDLTSTTEAE MTSESGECMFSVMNDSLGCVCVIQIVKSSLGLEL" CDS join(224795..225053,225106..225578,226098..226353, 226632..227126,227185..227306) /gene="CBG25449" /locus_tag="CBG_25449" /standard_name="CBG25449" /product="Protein CBG25449" /note="Predicted" /db_xref="InterPro:IPR042312" /db_xref="UniProtKB/TrEMBL:B6IES0" /protein_id="CAR98400.1" /translation="MHLIKLYFFHLCSFSFPPFQTFTRITLKRSLFMKLVLLSLVVVS TTVNCQDSSTEASSTTPLDCGYLAVPYKKTNLLLRWAMLQSRYNAELRISAVYIEGLC VVSSTPSTTAMLSSTTELISSTTESPTTTTEGFDCYWLKDSIDFITISDYYGDCCNTA SVDYLNATYNDKWTTNKVKIDRRDYIRALRNSGLCGRSTTSTVISTSSTTITTTSEFE STGLASTLEAETSSKSGECMFSVTNNKMEFFLFLSLTIFPIPITSIDCFWLSESWSLA PEFPLTYNGKCCNKEAVDYCIMYYKDWMNNGRNYELLNVLNSLGYCYEQTSTEVSFRR VIKARRMTICFQRLSIYILLIYLYSANCQTPKDCGFLASSFQYRSNGTTKNYKGECCT ISAVNYMDENRSNWRNEQLAENYVELLYSSGFCVSSTTTRITTTTIATTTSKLNCESV DPDCCSSESLAYLNNNKLLWKELWGLLGGLFLQDLENNGFCGLTVQSLIHLYEFINEP CDCCHATPNIGLMIILDLLILSQNKT" CDS join(228250..228505,229048..229410,230383..230640, 230702..230950,230996..231253,231300..231470, 231519..232142,232192..232235,232326..232439, 232622..232711,232757..232873,232917..233045, 233092..233208,233253..233399,233442..233558, 233603..233731,233788..233904,233946..234041, 234431..234547,234594..234858,234908..234930) /gene="CBG00999" /locus_tag="CBG_00999" /standard_name="CBG00999" /product="Protein CBG00999" /note="Predicted" /db_xref="InterPro:IPR000436" /db_xref="InterPro:IPR035976" /db_xref="InterPro:IPR042312" /db_xref="UniProtKB/TrEMBL:A8WP50" /protein_id="CAP22256.1" /translation="MTTSTTTTSTTTTKIFSNISSTTVKLDCFWLQRSFSYPAGTYDG NCCNSNSVNFMDNRDQSWAAEHSEDARVEYVKELREQGFCEAVQFLDGKDPDWRLGDR VINVRWATRNYKCGSFIEFDMRTSTTTSATTTKMSPNISSTTVALDCYWLKRSFSYPA GTYDGSCCNSISVNLMDNRYPSWATEHSEEARVKYVKELQEQRFCECRGDDTDETYFS VQCPLVLKSDCNWLGTVVDYSYENQNYIYHCECCNSGSIEYLNNSHSDWKSAVINKNK IGEYIQELNRTGHCGGVSTTPSTTTTIRTTTETTSISTTSSSLNCGVFKNTECCTESV TKCLEGKQTDWLSLETGYESQLKECDCELSTTSTTTSTVSTETTTTISKFNCSWLSVP FQDDSNGWSTPFSYNGSCCSKTAVNTLKENPGKWILDSTDVWIKRNYLMNLLYCTEDA CTYPPRWENCSLTMTSSSSTTSPTTTTPVLSSSPATTTDSTTSSSDSTSTDASSTSPT DISTTLKNTGDNRKKTTLETTTATDSTTDSDSTTPSETTMSSDSTSSVYESSTTNDPE VSTSPTTSSSTTRTTANDTDVTTTATIGSLSSTTVVTTAETTVTTTSLPDTASSGNST TFGGATASTMARSSETTTTITITTKSTNGSTETTLTTPTTTVTTSSNSTTTTSGAQTN ETLTPSSSTSSPSPLPSRTPTTSGTEQNTSGTTVSSSSRIVSTTISTKPGTTTNVDGV YFRNTTVQLFENCTQLTQEQVYFVNGTRLRNDTVEFNACSSTSPLTTPIPTTTFNWPT GTTRILPSGEIVLSEVLQAFPNCTTVLMQLIFNSSTNETRTEVSSNPEGCKTTFSSSY VTSPMTTPTPSTTAKTTTYNWPTGGTTRILPSGEIIISESLIAYKNCTTVLMQLIYTP STNETRTETTVDEQGCKASSTTLSTSKYSTTPMLTTKPTQSTTARTTTFNWPTGGTTR VLPSGEIILSESLIAYKNCTTVLMQLIYNPTTNETRTETTTDAQGCKASSSSTSSKVT TTPMSTTVKSTTPATTTFAWPTAEQPAHCRLILSESLIAYKNCTTVLMQLIYNPKTNT TRTESTSDAEGCKATTTTTAPSVKTTTYNWPTGGTTRVLPSGEIIISESLIAYKNCTT VLMQLIYNPSTNTTRTETTADAQGCKASSTTPYSVNNTSPMTTSKPTSCAYPDLDLTN TIRPTEKELKTSYSIGEQLVHICKKYYAFEIAGQPFKLYQCMPNGKWAGVPEKCIAEE RTEL" CDS join(238248..238347,238522..238713,238829..238938, 240549..240653,240710..240805,240850..241002) /gene="Cbr-unc-4" /locus_tag="CBG_00998" /standard_name="CBG00998" /product="Protein CBR-UNC-4" /note="C. briggsae CBR-UNC-4 protein; contains similarity to Pfam domain PF00046 Homeobox domain contains similarity to Interpro domains IPR017970 (Homeobox, conserved site), IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:A8WP51" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="UniProtKB/TrEMBL:A8WP51" /protein_id="CAP22257.2" /translation="MLSDLEASVDVDTEPVKIMNDIWNDFWKTQINSVLLSCSDGSET SPIPENDKSLSSREQTASPDEEMPMEEDGGLMEDDTDIGETSAKRRRTRTNFSGWQLE ELESAFEASHYPDVFMRESLAMRLNLLESRVQVWFQNRRAKWRKREQNRHTGSDLKKV GDGLGAEPKPLPTFPFSIDSILAVSRVPRGRRPNAKYPRVQACKNLSPFMLPLFPITQ PGGNVIREKSPPPVPQAAPANPLTTVAELLKSV" CDS complement(join(<242338..242625,242681..243147, 243198..243281,243325..243613,246915..247007, 247010..247019,247499..247625,247736..247958, 248008..248153,248199..248640)) /gene="CBG00997" /locus_tag="CBG_00997" /standard_name="CBG00997" /product="Protein CBG00997" /note="contains similarity to Pfam domains PF09725 (Folate-sensitive fragile site protein Fra10Ac1) , PF00328 (Histidine phosphatase superfamily (branch 2)) contains similarity to Interpro domains IPR000560 (Histidine phosphatase superfamily, clade-2), IPR019129 (Folate-sensitive fragile site protein Fra10Ac1)" /note="Predicted" /db_xref="InterPro:IPR000560" /db_xref="InterPro:IPR019129" /db_xref="InterPro:IPR029033" /db_xref="InterPro:IPR033379" /db_xref="UniProtKB/TrEMBL:A8WP52" /protein_id="CAP22258.1" /translation="MDSKQVRNPYNGLDDLQSDFGDLPDDRIAQKKRKGDFMEKVRPD DLMKKKRTDGRADFQEEHGRMHRKMAKMMSMNAYERHKEIINLYYLSYPGATKLLNRK VEGETTDLDVLKKHHKFVWNEEDEGKEPESWEKRMAKKYYEKLYREFAIIDLSMYKTN RFGLRWRTENEVKEGKGHWWCGARKCSENSQMATWEVNFAYKEDGRSKNTLVKVTLCP NCSNKLNYGSKKRQIKQKKRAVRKWDKQRRREDSDEDEGVGTSEMKIEKQDKDQPSTS AASTLSASTDIWEGPAPAETEKTVDDEIDEFLNDLFLQPVKMLRILLIFTLSIVCVYP QTSSNYTLEFVQTLWRHGDRAALEDLHPIYEANWTFGGGGLGELTPLGMSQMNKLGTV FRQMYVENEELLSHRYAAKEIYIRSTNVNRTIISAMSLLYGMFPPGAWNIQGVDYPNS VDWQQGFTFVPVHVDGPELCVTTQQCKCARFVELQEKWAELPEVQSANAKMITMNRKV AALFNITKVPQLFSSYTDAWRCQRNWFNDTLYRDLPFYNEALYQESQTTFKPYKQLME GYFEEPAILNGVDIAHETSVIQGGSLLNELYERAREKANCIRNLDNCTSFLKPVKFYG YSSHDLVIYAVLVPLGIQDSVKTLDGWPDTSASLTIELYSNTSNNTDFFVKFLYRDNS RVDFSDVTERVKGCNGTKFCALEDFGRAAKKFKPLPDFQTV" CDS join(251264..251603,251650..253037,253081..254247, 254298..255155) /gene="CBG00996" /locus_tag="CBG_00996" /standard_name="CBG00996" /product="Protein CBG00996" /note="contains similarity to Pfam domain PF00013 KH domain contains similarity to Interpro domains IPR018111 (K Homology, type 1, subgroup), IPR004087 (K Homology)" /note="Predicted" /db_xref="GOA:A8WP53" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR004088" /db_xref="InterPro:IPR036612" /db_xref="UniProtKB/TrEMBL:A8WP53" /protein_id="CAP22259.2" /translation="MDNGHIGKKVSQIWAFSQQTSFSEETNIVEIDPATGGATLSFSY ASDFPTLPETAPAAAPTAKQTNVWSRPALSKTDVIITFHLASDERSNKVKSFGNTSEE SKKAQLIASATKTRIELSESKDGELTVVVKGERAKVEDARARIIRDLQTQASRDVDIP KEHHGRLIGKEGALLRNLEAETNCRIQIPKRDDPSSKITITGPREGIMRAAKHILDVS EHESKLATEHIVCPKNLVPFVRGPHNEIYDRLTATGVKVNIPPPTATNEVISVTGEKE GVLRAAAEIRKIVESKKNVTSIQVQVARTQHRYIIGQARSGIHEILAKTGVVVEVPSE ESKSDQVTLIGDANDLAKALTLVIERASSVVTQSIACPQWLHKHLIGPKGATLATLVP NRNNVQIEFDNSNHIFLEGSPEEVKAAFEPLNKEVARLQMELAIEKVKVHPSLHRHVI GRGGSLISKIKEQAGVQITIPSEETNSDEIVVEGKKDGVKKAVAEIRSIVTKIENEKS RDIIIPQRLHKLIIGTKGSGVQVIRDSHPNVSIMFPDAKSKSDVVNIRGDKAEVDAVF KKLTVLSKEFAENNYQQTVAIFKEFLKHIVGKGGATIRKLRDETETRIDLPESGSDDG KITVTGKQANVEKAVAQLNKIQEELANVAEESIDIPQKVQNRFFGNGRRLISDIEEEC GGVHIRFPSEKSESTKVTIRGPAGDVTKAVGLISALAKDKEENYVEDTVKAKAEFHRF LIGKGGSKIAKLRDTLNVRIMFPNEGDAEKETIHLLGKKDDVPKAKAALEEAIKHLSE TVDIKITVDPKYYKNFLARGAALIKEIQDQNGGVVISFPKNGSDSNEVSIRGSKQCVE AARARIEDTVEDYEKQITDTVSIPAQFHRGLLAGRGAKIHELQSKYNVSVRFPNNRDE GAESSDEVIISGRDTKVEEAKEALLALVPISKVIQLPVDMHRSIIGRGGETVRKLMQD YDVNISIPKDNSSEDITVTGQVDNVEQALEALRGKLAEYEAQAEDRKLKQWSMTINVP TDYHQKIIGQRGATITALKEKYGVNINVPREDGNEAITIVGYEEKAKECAAAIEEMIS DLRSMFTQEITLDSRYHPRLIGTRGKNLKKVMDDYHVEIRLPRQGAEDPNLVIVAGKD ENDVYDCIDHLRSEEETFLLDNVERVSFYDDSDHNLFQSFQTQYMSPRQQESHNARPQ SGPVTVQMKGAPWQLDIGSSEQFPDMGPSATTTAAVGGAWGSSRRW" CDS join(255800..256035,256082..256202,256228..256443, 257332..257884,258065..258192,258236..258378, 258435..259191,259216..259527) /gene="CBG00995" /locus_tag="CBG_00995" /standard_name="CBG00995" /product="Protein CBG00995" /note="contains similarity to Pfam domains PF03155 (ALG6, ALG8 glycosyltransferase family) , PF04493 (Endonuclease V) contains similarity to Interpro domains IPR021173 (Bifunctional dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl glucosyltransferase/endonuclease V), IPR007581 (Endonuclease V), IPR004856 (Glycosyl transferase, ALG6/ALG8)" /note="Predicted" /db_xref="GOA:A8WP54" /db_xref="InterPro:IPR004856" /db_xref="InterPro:IPR007581" /db_xref="InterPro:IPR021173" /db_xref="InterPro:IPR039487" /db_xref="UniProtKB/TrEMBL:A8WP54" /protein_id="CAP22260.2" /translation="MGEIPCILSIGAILIAFKCLLIPSYTSTDFEVHRNWMAVTWNRP LKAWYTESTSEWTLDYPPFFAYFEWALAYVAHTIGFDDCLQISMTPIMSPRILVFQRL SVIATDIFYVSSRIFWNIAICALYAFKSPRLVAGIPKKMRKNAQEACFILLATLQALL ICDSVHFQYNSMLTAFFILSMYFIDFGMFLLIFFQAALTFSVLLNFKHIYVYYALGYV FFYLVNYFEFSVAKFLRNFSKGTTRYSFQSLTEFLSAISLAIFLLLPFAFSIFPFFHV AGAEGLQNIATRLFPVSRGLTHAFWAPNFWALYNFADLILYRVLSNLNIGKFEAPTYT SGLVQEYSHSVLPSVNPIGTLFLVVIASVIVLTGLVIRWRKDSRPVDFSLFAVFSALS FFYFGYHVHEKAIILITVPMTIFAIKDPKYHSHLIHLSCVASFSLFPLLFTPFEVLLK YAICVAYFFIQLTFLKRYTRMPLGDLLPWRHVASWAGLAIVEIYNTFLHKWLLSDRLP FAPLMVISVLTSIELTSFFGSLIWTTFADGIIEISWQKATCRLREQLIRDMTYSVQTV EDEQDVQIVAGVDTSASSSNPDMVYVSVSFWKYPGLQHLATISDTRILRLPYIPQYLA VREAEVVADFVRTVIAERPELRPDVILCDGFGRFHSRSCGMACHVGALTGIPSIGIAK NLALHDVYETVGIDKKSKVDQFVDSCREVRKPKNECIYKSNKPVPGFIPFDIVEPVKL NILRMGGSMVTIQALSKLLLFFEFQSGVFVSAGYGIDLDLATTISSKFLLNNTTCEPI RAADLESRRLVRENFDGNRDKIE" CDS complement(join(259801..259941,260352..260442, 260665..260774,261162..261218)) /gene="CBG00994" /locus_tag="CBG_00994" /standard_name="CBG00994" /product="Protein CBG00994" /note="contains similarity to Pfam domain PF10853 Protein of unknown function (DUF2650) contains similarity to Interpro domain IPR022559 (Protein of unknown function DUF2650)" /note="Predicted" /db_xref="GOA:A8WP55" /db_xref="InterPro:IPR022559" /db_xref="UniProtKB/TrEMBL:A8WP55" /protein_id="CAP22261.1" /translation="MARATTTLLIFLLPVAYSMVVWPVLDRNTTRSTIVRPKNWAEKN LGQWCRNFTVNEHTQCPQASAFHQFDCCGQHETECCFAIQGWVIVILIIVGTCASIVL IFSTLLKLNLICPLPYSTKPIPPTYTGIHD" CDS complement(join(266448..266540,267789..267973, 268024..268114)) /gene="CBG25450" /locus_tag="CBG_25450" /standard_name="CBG25450" /product="Protein CBG25450" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IES1" /protein_id="CAR98401.1" /translation="MKLYFISFFVITAICDQKQYYEKYGINFNEETEFEFLRYENFHY DDGPIATIDSTTCEAARLLCYDYLRCDYNCEDRFVPKWGQEREVEDRELPLANPCVLT QYKCYGVQNLEMAKFFKKDF" CDS complement(join(270491..270607,270954..271111, 271233..271398)) /gene="CBG00992" /locus_tag="CBG_00992" /standard_name="CBG00992" /product="Protein CBG00992" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP56" /protein_id="CAP22262.1" /translation="MSIATKHFLIILLCHVALSITGIQANSIRRHPIIMVKCGERPVS GANVQFIEYENLHYKDEHQDFRDVTDKHGHYHFKEVDALDSLRSSENEIRISIKDICK LDTVKHDCNLPYNHFEVPIKTIPFVENQQLLLDLTDWKFDTKCI" CDS 278408..278521 /gene="CBG00991" /locus_tag="CBG_00991" /standard_name="CBG00991" /product="Protein CBG00991" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP57" /protein_id="CAP22263.2" /translation="MLAYKVNSELRSQSSQKKVFRSNHPTTPTTASTPSMD" CDS join(279702..279948,280488..280531) /gene="CBG00990" /locus_tag="CBG_00990" /standard_name="CBG00990" /product="Protein CBG00990" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP58" /protein_id="CAP22264.1" /translation="MGWWSSRSVFHGSLEGSITGTGLATLAEDKTASTVQGLGGRSAW AMGWWSSRSVFYGSLEGSITRTGLATHAEDQTADNGIFEYHKFGILEVRIAE" CDS complement(join(281423..281572,282443..282655, 282701..283317,283371..283685,284081..284216)) /gene="Cbr-aakg-5" /locus_tag="CBG_00989" /standard_name="CBG00989" /product="Protein CBR-AAKG-5" /note="C. briggsae CBR-AAKG-5 protein; contains similarity to Pfam domain PF00571 CBS domain contains similarity to Interpro domain IPR000644 (Cystathionine beta-synthase, core)" /note="Predicted" /db_xref="InterPro:IPR000644" /db_xref="UniProtKB/TrEMBL:A8WP59" /protein_id="CAP22265.2" /translation="MRRLFHHKPENAPEDHGMGTSESSNPTEKTVHFSDHLEVRTEED AESPTPDQQQRRNSASGRRPSFLAQMRDLIHPRSGSFGSSMFRRPEATRRVQVAECNV EAVYDLRDKHAHFYDDDSGFRRPRSNSSDLLILRKTSRPISFNVVGVIDQKTDPYHQY MSVVDVYELCPNNSKIIIIDAKTPATRAFRVMRDNNITTLIVWDTSDTERVRRNILTL TDCLRAIRDEKKPMLGPDLTAWDILSENEKKLVSVSISSKISELCEELHQNSLHRVIV LDDHKEVVSIISVRRVLMAIHKQNRSIHFAQWLSKPIGMSAIGTWEDVCVIGRDETVY RAMEEMLDRHYSALPVVDANQNAIGVITKTDICKALPRNFIEPKRWLQETTVADMLHI CKSELFISSADSVGQVLDTLLNADTQSAFAIHNNKVIGVISLTDFLTHILRSPLATTD EEPPQPAMPPTPESNSSSTENMAHKL" CDS join(291133..291232,291630..291904) /gene="CBG00988" /locus_tag="CBG_00988" /standard_name="CBG00988" /product="Protein CBG00988" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP60" /protein_id="CAP22266.1" /translation="MNLGFILIVSFVIGSVIAAPLHVEYVLAPVPLKQKTDDKSKLIA IVPLNTSTIVIKFDKPFLAEIEKTSEFSANFDQALVGKESPIVKLLTKPGSLEKPVVV NIKDTKNGDSVKVMITKEAGAQ" CDS complement(join(292682..293122,293349..293789, 293835..293921,294151..294612,294850..294855)) /gene="CBG25451" /locus_tag="CBG_25451" /standard_name="CBG25451" /product="Protein CBG25451" /note="contains similarity to Pfam domain PF00505 HMG (high mobility group) box contains similarity to Interpro domain IPR000910 (High mobility group, HMG1/HMG2)" /note="Predicted" /db_xref="GOA:B6IES2" /db_xref="InterPro:IPR009071" /db_xref="InterPro:IPR036910" /db_xref="UniProtKB/TrEMBL:B6IES2" /protein_id="CAR98402.1" /translation="MDVKMSETPGSLNESPKSSVLKGIPLQAASFQIWAEKHKKEKDR NKSQLDLFKIYGPIWEKLSRQEKKPFEDEVNKLYSKKAGFQKPEKARKVNQKLKYPPN SLGLWLEEVRTSDDVGKSVVDLSRKYGEAWRNLSEEERKPLIEKARKLREIFKKEHPL AYTRKKDEEKVIRFKEETVGEVLKKQVFQYKEPEAEKLNQELSSFFEITKNLGVDFKT DSVADSSEAQQNCKIEKSRHPIDIPILKDTENNNKNQSGFQNLSQNPLQNSSVFQHNS IDLVIEDVLRNVKSGSLDYRVWKKSIYEKEYEKFPEIFEESGNLIDLEILKSPSVEYC PAPSETLSTFKNKTKKATKNRKSENSQKVIQILQHCSSEDFKEKSIESVIEDVLRNVK SGSLDYEISKESVYEKDYEKLPEIFEENFGSEPSKAKTKKVRKIVKCENPNDILPFPE VDQLDVQFDIDSIHPTFFGPNGYKWEHF" CDS join(297075..297750,298343..298680) /gene="Cbr-cysl-2" /locus_tag="CBG_00986" /standard_name="CBG00986" /product="Protein CBR-CYSL-2" /note="C. briggsae CBR-CYSL-2 protein; contains similarity to Pfam domain PF00291 Pyridoxal-phosphate dependent enzyme contains similarity to Interpro domains IPR005856 (Cysteine synthase K/M), IPR001216 (Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site), IPR005859 (Cysteine synthase A), IPR001926 (Pyridoxal phosphate-dependent enzyme, beta subunit)" /note="Predicted" /db_xref="GOA:A8WP61" /db_xref="InterPro:IPR001216" /db_xref="InterPro:IPR001926" /db_xref="InterPro:IPR005856" /db_xref="InterPro:IPR005859" /db_xref="InterPro:IPR036052" /db_xref="UniProtKB/TrEMBL:A8WP61" /protein_id="CAP22267.1" /translation="MSRELMVETGGELIGNTPLLKLNKIGKDLDASIAVKVEYMNPAC SVKDRIAFNMIDSAEKAGLIHPGKTVLIEPTSGNMGIALAYCGKLRGYKVILTMPASM SIERRCLLKAYGAEVILTDPATAVKGAVERAEQLRDVIPNAYILNQFGNPANPEAHYK TTGPEIWRQTQGKVDIVCFGVGSGGTCTGVGRFLKEKNPNVRVYPVEPFESSVINGLP HSPHKIQGMGTGMIPDILDLKLFTEALRVHSDDAIAMAKRLADEESILGGISSGANVC AAVQLAKRPENKGKLIVTTVNSFGERYLSTALYHELREEAANMKQLNLDDSIKIAKAY LKI" CDS complement(join(298976..299148,299192..300179, 300222..300348,300402..300454)) /gene="Cbr-vnut-1" /locus_tag="CBG_00985" /standard_name="CBG00985" /product="Protein CBR-VNUT-1" /note="C. briggsae CBR-VNUT-1 protein; contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domain IPR011701 (Major facilitator superfamily)" /note="Predicted" /db_xref="GOA:A8WP62" /db_xref="InterPro:IPR011701" /db_xref="InterPro:IPR020846" /db_xref="InterPro:IPR036259" /db_xref="UniProtKB/TrEMBL:A8WP62" /protein_id="CAP22268.1" /translation="MLKRPGEYEPPLGKIWTRAESRMWTITMFSGTCVLYAARASLPI CAAAVAKEFAWNKTDSGTVLSCFFWGYALTQVFAGRIADKYGAEKILPYSSLAWTMIT FFTPHLFDFAYWTNYPLVVLLTIRILTGVCQAFHIPSLASIVSKHLAAADKGRVFGIV LAGSHWGTVLAGAIGSILIEWIGWRSLFQFVGILSLVWCWIFRWVLDKKNGTGGGRSS PQPDEEVLIDKKHDTIESHLSANTPCPSVPWGTLFRHPAFWAAAVAQYTGGNSYSILF NWLPSYFHETFPTAKAVVYNVVPSLAIVVTSLVAPVMASRALAEGKTVTYTRKLMEGV SLIGIAFCLMLVPMTSSFWLSLLIFTMAMAARGLHHGGVSVNPHDFAPNHAGSVFGVF NACGAITGFVGVYIAGHILEATNNNWSYVFIVTAAQCVVGAMVYTLLGTGQKII" CDS join(301529..301740,301786..302098,302144..302803, 302847..303131) /gene="Cbr-usp-14" /locus_tag="CBG_00984" /standard_name="CBG00984" /product="Protein CBR-USP-14" /note="C. briggsae CBR-USP-14 protein; contains similarity to Pfam domain PF00443 Ubiquitin carboxyl-terminal hydrolase contains similarity to Interpro domains IPR001394 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2), IPR018200 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site), IPR000626 (Ubiquitin)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WP63" /db_xref="InterPro:IPR000626" /db_xref="InterPro:IPR001394" /db_xref="InterPro:IPR018200" /db_xref="InterPro:IPR028889" /db_xref="InterPro:IPR029071" /db_xref="InterPro:IPR038765" /db_xref="UniProtKB/TrEMBL:A8WP63" /protein_id="CAP22269.1" /translation="MPIVNVKWQKEKYVVEIDTSAPPMVFKAQLFALTQVLPERQKVV ILGRTLGDDDWEGITLKENMTIMMMGSIGEIPKAPTILEAQQQNVGQQAEEMSNLYPC GLANLGNTCYFNSCMQMLKEVNELILKPADETKIREQNDRLCHNLATLLCQLRDKDKA LRSKGDPIKPFASIISLSESYPQFEKFKQQDANECFVAIMTNLTRFYGLAGYPIDNLF KIKTETNCKCLETEEVAEKKTESATQLTCYVNQDVRFLQTGIKAGFEQEVERNSAQLG RDAKWQNHTLISRLPKYLTVNINRFFFKESSKTNAKILKSVQFPISLDAYDLCTQELK DKLVTRRADIKLEEDAKLERELRKKVLDKEQADKIFDDGVALPTEFESDPGSNNSGFY ELKGIITHKGRSSQDGHYVAWLRSAEDNKWRLFDDEHVTVVDEEAILKTSGGGDWHSA YVLLYEARVIKQYPELPPAPVISEADNVVDEPMEVSSKP" CDS join(309245..309496,309546..309650,309698..309922, 310215..310427,311293..312210,313131..313207, 313482..314082,314131..314383,315092..315249, 315336..315497,315587..315691) /gene="CBG00983" /locus_tag="CBG_00983" /standard_name="CBG00983" /product="Protein CBG00983" /note="contains similarity to Pfam domains PF03188 (Eukaryotic cytochrome b561) , PF03351 (DOMON domain) (4)contains similarity to Interpro domains IPR004877 (Cytochrome b561, eukaryote), IPR005018 (DOMON domain), IPR006593 (Cytochrome b561/ferric reductase transmembrane)" /note="Predicted" /db_xref="GOA:A8WP64" /db_xref="InterPro:IPR005018" /db_xref="InterPro:IPR006593" /db_xref="UniProtKB/TrEMBL:A8WP64" /protein_id="CAP22270.2" /translation="MTIRFLLVFALIQPAFIHCQQPKFDTSQCEITKGCHLPEPKDSV GMGVAWNLLDDETLELELFVNTDQANGRYVAVGFSDDDQMGNEPVIECSAIAQQPPSL KFSFDKANGKGNERVPGNFSAHFYDISTSFQDGQLYCKGTVKVSGSSENEKVFKYDPS KEYHLLLANGKTTAKGLGYHKSQSSVSRKLRLAENSGFDKTQCGKSKGCTMPDAGSCY NVDGGIGASYRPIEGTQNIEFEIFGPANTSATNDVFVALGFSNDEFMNASSVIECSQL PGEANPTMKFSYNPVFNNTRIAGEEAIRAKLIQQSIGKVSDGSVYCKGIVNVGGDVNE PRIFKWNKDQGYHLLFAVGFTASTGLTPHWGSCVSILTFLDQLDNIGFNDADCGNKKG CFQPTDCDGGCDEIASSWQVLSPNKLHVELTGKVATPNKYVAMGFSTNGRMGNNSVIE CSSFDNGTFSMTFSYNLVNAHNSNLRPSTDVSTLFSNQRVQFVDGVLYCSADVLVEGN ANDQAVFKYEPGTNYTMVMATGETKTNGTEKGLGSHHGKRSVAPAQLLSDYLPPTAAP PPSGGGSFDSSACGKTKACYEPTTGDAVSYRVINPSSIEFEFSSTQSSPSGVYLALGF SSDGKMSPADVIECSSLGNQALSMKFSANSGYSNSRIDGEEDIRSQYITDTQTSYADG KIYCKGTVKSDGNANTQIFKCTPDQKYYLIVAKGATSAGGLGYHGQNGKHVSSQRLLT DLSAGNGSGSTVTLVMLHAIFMTVAWMTMVPTAVIFARVLRSSWPTLKPGGLLIWFHI HRGANLIGIALMIAGFVLILVHKDWKFVTAGWGGKHAIIGIIALCLAWLQPFISTLRC SPNDPRRPIFNYIHRGIGVIAMVLATTAICIAGYHFTGNRNVVQLVLALIPISVIFAL SIFFIIFNNLVDVDTKSFTKQNGNSSARIEDIPMRPTSKTETETTWTIRSPQSAASPD SDSSRNEVPLEKKRLWVNRFRELVVYGAVLIFVAIGTILSVFFALGLNGK" assembly_gap 312612..312817 /estimated_length=206 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(320181..320364,320566..320966, 321013..321214,321262..321458,321508..321679, 322305..322387)) /gene="Cbr-dmsr-6" /locus_tag="CBG_00982" /standard_name="CBG00982" /product="Protein CBR-DMSR-6" /note="C. briggsae CBR-DMSR-6 protein; contains similarity to Pfam domain PF10324 Serpentine type 7TM GPCR chemoreceptor Srw contains similarity to Interpro domain IPR019427 (7TM GPCR, serpentine receptor class w (Srw))" /note="Predicted" /db_xref="GOA:A8WP65" /db_xref="InterPro:IPR017452" /db_xref="InterPro:IPR019427" /db_xref="UniProtKB/TrEMBL:A8WP65" /protein_id="CAP22271.2" /translation="MECNDTRLFDTSNNVTYFIIEQFYRFRYLYSNVHPYLSFVLCIL GLAANLIHICVLTRPRMRHSSVHTVLVCIAFSDMGTMSSYLLYISRFEFLPEKEGYPY IWALFLKCHAMVSIALHAITLYLVVLMAFIRLSAMKLTTSRWLDHTRALTSAIFIALF VFIMCVPTLLAHQIDETTRGVTLTGMYYRYSVGFSTLMLQNGCFLMKGNLWLTGIFLK ALPCLLLLTFTIALIHRLRENNEKRKILIKEERAKKRGDFTTYMLLLMVTVFLFTELP QGIMAIMNGNTLGESFFLTFFVPALFTTQFHQMVYLNLADVLDLLSLINCYVAFLVYS FTSSRYRQTLFSLLPLTRISYSGISTRQGTLRSHPNQPAAPKTLVQRANSVEVASVRS PLVDKSAATTRPNSAQPTEF" CDS complement(join(337574..337718,337765..338195, 338503..339006,339056..339442,340024..340593, 340650..340791,340849..341102,341151..341252, 341305..341385)) /gene="Cbr-smg-8" /locus_tag="CBG_00981" /standard_name="CBG00981" /product="Protein CBR-SMG-8" /note="C. briggsae CBR-SMG-8 protein; contains similarity to Pfam domain PF10220 Uncharacterized conserved protein (DUF2146) contains similarity to Interpro domain IPR019354 (Smg8/Smg9)" /note="Predicted" /db_xref="GOA:A8WP66" /db_xref="InterPro:IPR019354" /db_xref="InterPro:IPR028802" /db_xref="UniProtKB/Swiss-Prot:A8WP66" /protein_id="CAP22272.1" /translation="MNISEWIEQSRSVFKAQLDTKIKIIGIIGKDYPDHGKGDNINCY LRENVFPVATSDNETCTIFAHFSEDEQLLFLVLNGVDDVANLRKCMESESKNYFEAMA ESESQQMRLLHFLFISCHFIVIFEQTSRIDLEFIRFLKKVNTLRSLNRRKVSQRLRDV DFDFDSDGRLTVPYVLMAFQRNNIRTDTNITKKRELYEKLEKNLDHQLTDILKLYDLT GSGNSALCQLSESLQVVHLLNPDSVKRDIITEMFDIFMAEAENGNVARVAANHKLTSN NAFVRFLEDRFRAEKNEISLNIAIDMLEALQFVLDGSLEEKPESLRSQTQTFIKRIQS DHMEEARRLYTNETRPVSGERRGGGFRITEQETMDPSVKIRSKQEHLIRFNEATCYIE TVVGINQQEILSQVQTQCNDMWQSDLRACESISMMGHPCVKKVHPTYGDQTVPEARWT AHDASNTLVSTCVCGNKQLVRQEPFTLKEANFDFYEHPDFNCCKGLWRYQFQLYQEDT EEKDDIMWADRESNSLRAAKKMAQREDELAVELDDMELPESLQQSYTSSEDSSEDDDD FAIQTASSEDSLSGSDSYARPGSRRDEFESSKTARDMAVYFAKRIQKLEKLEKMDDFL MGVPNTLTIGKLPMFPSFFLTSLGESNLYKHGAGLKNQPNFKLGGEYLTPAVVFLDVD LDVWCRDLVKFRTDDYTRRGTKDLKDDMPRVKLFVGFEYECSRGHRFFVDHNGEPLIY PRNVNVLKESSARASLGNILNADLPLRRPCTCRKPPLKSAQLQKIHVVTPKAPVKITI DPKILVPGHEGTYGTGQEPLELHHSKYYILHLPVVYSGPSGTWMPGEYNSERMGTLKG GSIKVVYKPVMPFRW" CDS join(344137..344250,345493..346363,346734..346868, 347363..347478) /gene="CBG00980" /locus_tag="CBG_00980" /standard_name="CBG00980" /product="Protein CBG00980" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP67" /protein_id="CAP22273.1" /translation="MQLDSSRPNRRPEKHQHQVQKPREISNRSLMTYKFERLLTSKLH SLEDTLRTIESSIDCAVQERVAEAVQNLMESDMIQNMIDRRVQAILAESTTPPATPVS PTQTISTRSTLASDSEETISCASSTSADEEVASCSGLSDPIPTQSAPHYPNKWEFISC LHPGEVTNFKLEQFTDPVRTSLKMTSDQDIFPRMSLEEMIERDHPTTSDSKMFDEKKI SCRNRTQGKHLTDEEFFCLAPCCSDMRLYQAASCPFLPAFVRNRLNKSEDCKVIVQRT ANGIELITPIKWQLVTPVIPDQKTMPPDVPEEEDVESIEEEDPLSNRDVVEQLMHEYF IPTPHLPLDDIVFGPYLQRVRESDAVPKNLLRDLVRRVNSNLDSSYRSHHELELFAEL DKVPIDEKYGRLPFMPMGN" assembly_gap 355088..355791 /estimated_length=704 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 359981..360456 /estimated_length=476 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(364316..364462,364987..365114,365162..365398, 365419..365637,365682..365940,365986..366150, 367395..367529,367579..367713,368062..368716, 368761..368915,369073..370986,371032..371188, 371440..371610,371653..372113,372659..372838, 372884..373087) /gene="Cbr-plx-2" /locus_tag="CBG_00979" /standard_name="CBG00979" /product="Protein CBR-PLX-2" /note="C. briggsae CBR-PLX-2 protein; contains similarity to Pfam domains PF01833 (IPT/TIG domain) (3), PF08337 (Plexin cytoplasmic RasGAP domain) contains similarity to Interpro domains IPR002909 (Cell surface receptor IPT/TIG), IPR001627 (Semaphorin/CD100 antigen), IPR003659 (Plexin/semaphorin/integrin), IPR013548 (Plexin, cytoplasmic RasGAP domain)" /note="Predicted" /db_xref="GOA:Q626H5" /db_xref="InterPro:IPR001627" /db_xref="InterPro:IPR002909" /db_xref="InterPro:IPR008936" /db_xref="InterPro:IPR013548" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR014756" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR016201" /db_xref="InterPro:IPR031148" /db_xref="InterPro:IPR036352" /db_xref="UniProtKB/Swiss-Prot:Q626H5" /protein_id="CAP22274.4" /translation="MLFIESAFLVLTSLSAAEAATPFEGGVKQKVFHSAGHIDDFIVS RDQQTIYIASINRITSLHSSNLSIQNEVSIGPVQDSPWCSADGKSCLKDNRPFSTDVH TKILQILPSGQLLQCGSVKLGSCSTFNSKLSLITEASTPVAANSPDASTVSQIIDNRL VVAASPTKESPGCNPNLPGLNVENAGDLEGEAAVYLRAAYRSSFRFVTTFSHQHFIFV VATVTPRETRLPVTTRLIRFCKNDTKFVSYSEIELQCRGEDNTNYPFLTAVVQTGDKL IASFSASPTSSKNSICVFSMQKVKLTFWYNVDRCRSGTDSIKLSHIGRDTKCVNKAHI PLDEDSCELGVGGSIELVEMSTIDVLAKVTSLMAVDQKALFAGTSSSQIVMLKWDEQN SNKLEEYGRKEIGDGRTGSEVVKMTRFGDFILVQMPYGIVMEELSTCAHHESCTDCQV SVDPLCQWCHPTQSCTTSSRCSGPLTTQCPIVDGDPIPSMVSVNSSTSISFNIHHLPP PVGFVYKCYFGSKSHSKSTKATWTASGISCPSEMFGSPKTFEISLMTSISKNPISRHN FTVFDCAGYSTCSTCMSSEFGCQWCSHKCSSSCGSASAKACVKIQPMKVPIAIGSQQE IVLEALNLDTLDRKTEHFCKVNGQVAPAKIASDSIRCGKIQLAGSNETNANMVVPLSL MANDVVVDIANVSLYSCSNLAADCSSCLALSPSLSCGWCNRKCSHECHESKATAVCDP PKIDRFEPSSGPVEGGTVIKVYGNDLGMSVEDVRGKIYVAGSRCNIVEYQVSNMIACQ VDKGVSSGPIKISVGRATMAVAESSDLFSFVRVSIFSAYPLYGPISGGTRITLYGQNL SSGSRISVTVGGLPCPIERINSSTVLTCLTPSGSSIGKSAKVVVHVDHSQIQLDQPFE YRSDPSVNSIFPLSSFKAGGRIVSVQGSSFNTVQSARMFLISSPTPPFEIISDLAPCH IINSTLMTCMTPKILETITRRVEYTRQPVGFLMDNVTAVANLGRRIQMSVYPNPSLSP FKGIRYHQGEQSLILEGHNLNLAAEPNDFKIFVGSERCYVTLVDVRQLVCSGPLKQPK PTDERGVPINGDNPLVTVIVGSLRMELGLIEYSDHALPSRLSFLILGLLLFTVITLIV MCLIFKRRRQEREKEYRKIQLQMENLENNVRKECKQAFAELQTNLVLSPKSTGTITSP ELIHFPHFVENLLWADQNLTSAPSLARTLPVTLAQFHALLSFKGFIFTIVEAAESDVS ISTSEKSTLASLLISVLLRNFSYCTEIVVDLLKAHIARSVQAKRAELLFRNSDSVVEK MFSKWMSICLYSHLTPQMNSYFYLYKALQYQTDKGPVDAVTGDARYTINEAKLLRESV ETKTLKIHIVPFEKCDETTHLEVHACDAICQLKQKVASAVYKETPYSQRPRITQFELK LKCAKRGDIKLTDVSAVETLSQKKLPVKLLTLADYGIQDGATLEMTSAVYTAESYRNS LADSGQSSWSSLDRCSPIYSSSKYYHLTNPSSGTMTFKKRTSPSEIPKSIPEVYLTRL LTSKGTVETYVEDFLESVLYMHDSSYPPILKFFFDILDREASINGVSENICQQWKANG YVLRMWTNFVKNPQLVFDVPHSVSMDANLSTVAQTMMDCFSFSEPVLGAHSPSSRLLF AKDVARLRPLSVDLFKRVKNSPPLGMEELRTELVNMANDVSTCKGSSLALSELLSWVR GNGIRISQLLSSNQETSQQRLPQKLSQVLHVCLETDNHIYSTISDYD" CDS join(374907..374974,375029..375350,375948..376256, 376528..376919,377232..377754,378535..378746, 378798..378975) /gene="CBG00978" /locus_tag="CBG_00978" /standard_name="CBG00978" /product="Protein CBG00978" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP69" /protein_id="CAP22275.1" /translation="MDSDSKDNVKKTDSDRQNQAKREDNKLNRNSNRRRTKDSARERK KNELPPVLMPKFPSQRLVRKKKSNDKIDQKWTDREDEEGIPQCPTDKFLEDEEELGAE QWNVDRCQEPEEEVDETQDQQPPDQLIVEDNLKQPVPEKPSLVLEKPIRPEKSQANPK GKENQSARSEHRKRGTESDRNKKVDTKRRISKRSSAENIFSEEGGGGGRQSLRKSRKV TTKKIQIKTNNNNVVKSIQQPTPSQDPPNISSSPDNKPDRLINNCGGPEKSTDEKVRK PPVPPTPPVVPPTPPTTGTPIAQTPPLQVSITMKRDQGSAGMKPKTASSAQTSQRFDT QKKKRKNGFLKSVYRKTKFWGRKSDCVADPTTEMLAKSYVPPEYDKRNELDFKPDIKK WFSSYPVNDYVTRVKTNLATSKDDIFVNNRPFWLTRQPGDESIPKVRIQLHKPLKQMY LKCPTEILPKQNRQIPFNDPKTQNWKLLKMVDKSIGIEDDDSARVPEKDRAAKDKAKE NELKRVTANTFHATMMFEVEKLIWDEQQKKFQEDPDPKRRQLKKDVEPKSSLEDEPPS GKRVTWSFPQKPAVEKVQKLLKKPDISIVPECVYEYQLQTYNRKLRPHSDKSKNRDFA TFDYIVGISKIPRKATAIPASSSSATSVSSKSVTKSSSTEGKK" tRNA join(376370..376408,376442..376488) /gene="CBG28850" /locus_tag="CBG_28850" /standard_name="CBG28850" /product="RNA transcript CBG28850" /note="C. briggsae predicted tRNA" CDS join(381461..381470,382422..382810,382900..383205) /gene="CBG00977" /locus_tag="CBG_00977" /standard_name="CBG00977" /product="Protein CBG00977" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP70" /protein_id="CAP22276.2" /translation="MSVSWTMSGYACNQPQLYSQCNCPSFCSSYMQQPQYSPCGYSNG CSGGGGYYPRRRRPHRKHHKKPRRKFRFDSDEDGDIPPPPPTRKSKVSRLESEEQGFI EEKETTRVTSSGGAGAGSRGSTGGDDGWENEDLWEKKFVTDRTNTKAEEKLDSEEFPE ITSEEIAEAHRRRTSTMPPPRVVQPQPQPVQPAGGGLGGLGLGNGGLFGISSGVGVGV PGVGPIGISSGLGIGK" CDS join(383382..383551,384119..384315,384363..384682) /gene="CBG00976" /locus_tag="CBG_00976" /standard_name="CBG00976" /product="Protein CBG00976" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP71" /protein_id="CAP22277.2" /translation="MLKIIVLTAIVLEVSSSEFSFFEDFKNEFLAFYGSMTGYACNQP SLYQGCNCQSLCQPYTEPYNIYYQHGYGCQGLCPGGCEEEDSHGSECGMKKRRKNKKK SKKKKKKFHFSEEDTSVVDNESLHHHKKKKPSDDDDEFPLPPSSEEVDAAKSSKTEDK DWEDDEKWESKFVSRTTTVRPAPAPATGSGLGGLGLGNGGLFGISSGVGVGVPGVGPI GVSSGLGIGK" CDS complement(join(385539..385765,385814..386130, 386202..386413,386842..386941,386990..387135, 387189..387277,387329..387511,388095..388257)) /gene="CBG00975" /locus_tag="CBG_00975" /standard_name="CBG00975" /product="Protein CBG00975" /note="contains similarity to Pfam domain PF07491 Protein phosphatase inhibitor contains similarity to Interpro domain IPR011107 (Protein phosphatase inhibitor)" /note="Predicted" /db_xref="GOA:A8WP72" /db_xref="InterPro:IPR011107" /db_xref="UniProtKB/TrEMBL:A8WP72" /protein_id="CAP22278.1" /translation="MKLLVSLFPYFLFVLIIEIFAEENQKLIDAVAGFCTSHDGYDSG FCLDYAKLRRERALPNATVTSPQEIANKTASAEKPPPFKQEPGEILFQEGNKTTVVDP TDTTDPDEEISGLTPQQIQAELRKIIQEELAKKNIQKTSPDDPACKNLRDEYDEVCFA TPPLAAFQETREFCLAFVKNCQNSLLTNIFTNVKNFKIDFTAYCKKHRERFRYVCPDP LRFQSFAENAVDFCVRYQDRCPKEPVPAEPVKFHRKDEGHIYTREIEFWCTRTKRTAY NYCTEPDLLKVYKYAMFCGMYNSDCKSLKFSFEKVVSSAGSITFERSSFFASHVLPHG FSSQSDQSLESRLIPVFTMTTITVTATDEDQETPAPQEQLVLRLRAQPAQPAQRAPPS PPHVTWAADVVDNEHMGRLKSNCCCIYVAPRRWDDPSTWEPDEHETEHCRGHTLPEKK KPRKEDEDGDEDKENKAVENHGCGCDHC" CDS complement(join(391105..391248,391294..391558, 391817..391912,392388..393010,395643..395800, 396942..397065,397138..397299)) /gene="CBG00973" /locus_tag="CBG_00973" /standard_name="CBG00973" /product="Protein CBG00973" /note="contains similarity to Pfam domains PF01507 (Phosphoadenosine phosphosulfate reductase family) (2), PF00994 (Probable molybdopterin binding domain) contains similarity to Interpro domains IPR012183 (FAD synthetase, molybdopterin binding), IPR002500 (Phosphoadenosine phosphosulphate reductase), IPR001453 (Molybdopterin binding)" /note="Predicted" /db_xref="GOA:Q626I0" /db_xref="InterPro:IPR001453" /db_xref="InterPro:IPR002500" /db_xref="InterPro:IPR012183" /db_xref="InterPro:IPR014729" /db_xref="InterPro:IPR036425" /db_xref="UniProtKB/Swiss-Prot:Q626I0" /protein_id="CAP22279.1" /translation="MRAIFRATKRMPPGQRKTAAIVVIGDEILKGTTRDTNSHFLCKR LHKLGVNIKKIAVVGDEISEISREVQSASSAYDYVITSGGVGPTHDDKTYLGLAHAFT DQLHFSDEIRQAVNRFLPTYIDKKKSEGVEEGIEEVVRVVTEKLCTIPKMSQLLWGTQ KVDGRVSTFPVVRVANVVALPGVPKFCERAFDELQDQLFPVEERQSMFFDTIYTDLDE FDFSRRLADVAARFEEQNVQIGSYPELKNKFFKTKLTIETESSESMEAVRIALKELLV GHIVYYDSHAWTDTVAKWRAFKKRELVEAKNVDFVRKLEEAEKIVEDIVERYPLDQIA LSFNGGKDCTVLLHLLRLKVDEKYGASKAIQGFHIMVEDQFPEATQFIIDAAQFYNIQ VLEFPGPLKIGLAGLKKQRPSIIPVLMGSRATDPNGKYMKTPVEWTDSDWPKVLRVCP ILNWTYSDVWHMLRGLCVPYCKLYDQGYTSLGGRDNTVKHPALRIVASDGKEHYLPAY KLHNDAEERSNRSNL" CDS complement(join(397606..398451,398501..399853, 399898..400013,400061..400373,400429..400491)) /gene="Cbr-ufd-3" /locus_tag="CBG_00972" /standard_name="CBG00972" /product="Protein CBR-UFD-3" /note="C. briggsae CBR-UFD-3 protein; contains similarity to Pfam domains PF08324 (PUL domain) , PF09070 (PFU (PLAA family ubiquitin binding)) (2), PF00400 (WD domain, G-beta repeat) (5)contains similarity to Interpro domains IPR013535 (PUL), IPR015155 (PLAA family ubiquitin binding, PFU), IPR001680 (WD40 repeat)" /note="Predicted" /db_xref="GOA:A8WP74" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR011989" /db_xref="InterPro:IPR013535" /db_xref="InterPro:IPR015155" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR016024" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR033510" /db_xref="InterPro:IPR036322" /db_xref="InterPro:IPR038122" /db_xref="UniProtKB/TrEMBL:A8WP74" /protein_id="CAP22280.2" /translation="MADSAVVDEAMDTSPPVGIQNIKNYAIGQVLEAHKSDAKSLALT DTGVLISGGRDETVQWWGPRAGKYSKILSFAQPKNIAVNSIAYADLADGWRLFVGRKD GSIAVYASGNSEPITIFNEHTQNVCCLHINQKATHMLSGSWDANVMIFPIAELNKPSF TVREVHKCVGHSLSVWALASFPENPDTYLTASADKTIRMWHNTNTINVFKGHTDVVRA LAVLSNAHFLSAGNDGHIIHWDVASASVLGKFSTNAHDFIYSMTLSDSHILTTGEDGT LEFWAMDADKNGQLAVRSEEVVQLPSSATWDAKVLPNSDIAVAGSDGRIYIMSNEPER QAATEIREAFDAEVVAKITQKMDRMQEEASDVVTIKVDIDDRPTQLELRYRKGTDPAL CAQEFIQDNQLSIHHLDEIISFIKVSVKQELKLKTVIFQQRIPEARAFDIKSGKKVLV DGEEYDYALSVTLGRGAAEMKMPFNINESPEFAAQRFVEKNKLPINTIPVLAGMISTE MDKLSRGQSASQAGYEDPFTGPGRYVPGGSSNNVQSAADPFTGSGRYVPGSSNAGGMD GFSGDPLTGDGGYRAAKENNGKHAVPLSSLPQDKKKPRGPLVPVPEYMIMGLAGKGDK AIAKLKELNENQDAFRLNSDQINCLEELFLLPSSSNYSSDLAQSAFDTALQWSVDNLV PVLDFFRIALTHESLNSYFCARDKGRDLVERLIAILVSDPTDLSLRVMVCRCIANAFA HPAGRKLFAATELSTLAPLVVHQFLSDKPVLQLSAATALANWSLALLQQSEKVQELGP KEDLLRAIVDVSVFRGLMEFYLFIFQKIETVSSFGYISEDSLTRLLQSIVTVMWGDSA VIRLAKNRGLAAIAARLKDAAQGDPCKNIARDIVEMTYAV" CDS join(401211..401260,401309..401638,401681..401942) /gene="CBG00971" /locus_tag="CBG_00971" /standard_name="CBG00971" /product="Protein CBG00971" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP75" /protein_id="CAP22281.1" /translation="MSDIDDSDTEFDDLRLVSSTPYIPDLEFQEDERTFEARFTGSFL EANLFGASKNGGFGDRNSSDDDESKENEERFVGLDWDASRIFKNLACPESKNENNVCV LRLHDILTKSEMGIQLITRQMMNGGLRINSYTSENRRDMGFEDSRNVENLHRMIRSIR ANMKILLLETEDLEELICPKVHRKDDGCSKNLKFWIPAVVTIPIACYVYSRYI" CDS join(403058..403540,403609..403787,404465..404840, 404893..405090,405214..405534) /gene="CBG00970" /locus_tag="CBG_00970" /standard_name="CBG00970" /product="Protein CBG00970" /note="contains similarity to Pfam domain PF01144 Coenzyme A transferase contains similarity to Interpro domains IPR012791 (3-oxoacid CoA-transferase, subunit B), IPR014388 (3-oxoacid CoA-transferase), IPR012792 (3-oxoacid CoA-transferase, subunit A), IPR004164 (Coenzyme A transferase active site), IPR004165 (Coenzyme A transferase)" /note="Predicted" /db_xref="GOA:A8WP76" /db_xref="InterPro:IPR004164" /db_xref="InterPro:IPR004165" /db_xref="InterPro:IPR012791" /db_xref="InterPro:IPR012792" /db_xref="InterPro:IPR014388" /db_xref="InterPro:IPR037171" /db_xref="UniProtKB/TrEMBL:A8WP76" /protein_id="CAP22282.1" /translation="MTILSKIWAPSNSVLLPRAATRHIRFLSTTSSLKAKIYESPEEA VKDIPSGAKLLVGGFGLCGIPENLIQALTKTGQTGLTCVSNNAGVDKWGLGLLLQTRQ IKKMISSYVGENGEFARQYLSGELELEFTPQGTLAERIRAAGAGVPAFYTPTGYGTQI QEGGAPIKYSKTEKMKIEIASKPKETRQFNGVNYVLEEAIWGDYALIKAWRADTLGNI QFRHAAGNFNNPMCKASKCTIVEVEEIVEPGVIAPNDVHIPSIYCHRLVLGKDYKKPI ERPMFAQEGPVKPATSSAGRSREIIAARAALEFTDGMYANLGIGIPTLAPNYIPDGIT VHLQSENGIIGVGPYPKKGTEDADLINAGKEPITLLKGASIVGSDESFAMIRGSHMDI TVLGALQCSQYGDLANWMIPGKLVKGMGGAMDLVSAPGARVIVVMEHTSKNGDPKILK SCELPLTGKGVISRIITDMAVFDVDVKSGLTLLEVREDLTVDDIKKATACEFTVSENL KPMGQAPLNQ" CDS join(406520..406705,406755..406886,406934..407153, 407201..407322) /gene="CBG00969" /locus_tag="CBG_00969" /standard_name="CBG00969" /product="Protein CBG00969" /note="Predicted" /db_xref="GOA:A8WP77" /db_xref="InterPro:IPR032801" /db_xref="InterPro:IPR036249" /db_xref="UniProtKB/TrEMBL:A8WP77" /protein_id="CAP22283.1" /translation="MAFLGYGAVAALGGAFIYANLPTYLTIGAVAPKFAHLATAKLIP IKGGPREIETIDKSEQFTANELFQKGPIMVMAVRRPGCMLCRREAAELHTLLPLLKEK GIGLAAVVHESRGANEFKSYFSGGDVYLDTERTFYGPNERWLPHWVGFLRFGTYSNVY KAKKAKVEGNMEGEGRLLGGVYLIANNDIVYTHLEKEWGDAANIDEVRAAIETFNVKT K" CDS join(408401..408655,408962..409129,409174..409302, 409648..409980) /gene="CBG00968" /locus_tag="CBG_00968" /standard_name="CBG00968" /product="Protein CBG00968" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP78" /protein_id="CAP22284.1" /translation="MDFNTMDYLDQFPALIPLHITDISLDDTTIFINDDKVVVGIIND KIEVRSQGKVIGHLEFSEENLNLLTTLFIKSGQKVETFIAMKPNLLKHLPPIEVTMSL VIRDVEDEESWDFLRKCSGKPVFLNYRCAISEKLWEVPIIANSLGITLYGPVPFDVLR SLKNVYVYLKCYTPPVADLKRLYEHWKATSHEQRAIGFEINLKTFEDYKTNIKTWAPH SYHKPQFGFPPSKVFCVDFHSDKQIVFTEENVKANGDALVIMCIDDKTMMDTVVEMFG KLQGFVANLRGDKKTLSK" CDS join(410778..411035,413286..413624) /gene="CBG00967" /locus_tag="CBG_00967" /standard_name="CBG00967" /product="Protein CBG00967" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP79" /protein_id="CAP22285.2" /translation="MDPLVQHPELRPIKAHIPLRLKKVSIEGAKILINKDQLIVEIKD ENIEVQALGKIVSTFAFSEETFQALASVLISSGQKVTEFVAWLWKSAKREQGVVTFEI YSKTFKEYKSNIRTWALTSYYKLQFGFPPRKVLCVDFHSKKQIAFTEHVGSSGNVRVS MCIEEKTRVDALFEMFGRLQGLVARWRRSGRPRERESK" CDS complement(join(415605..415802,416757..416880, 418594..418674,421695..421816,422523..422693, 422744..422809,422925..423089,423259..423354, 423404..423529)) /gene="Cbr-dnj-20" /locus_tag="CBG_00965" /standard_name="CBG00965" /product="Protein CBR-DNJ-20" /note="C. briggsae CBR-DNJ-20 protein; contains similarity to Pfam domains PF01556 (DnaJ C terminal domain) , PF00226 (DnaJ domain) contains similarity to Interpro domains IPR003095 (Heat shock protein DnaJ), IPR002939 (Chaperone DnaJ, C-terminal), IPR001623 (Heat shock protein DnaJ, N-terminal), IPR018253 (Heat shock protein DnaJ, conserved site)" /note="Predicted" /db_xref="GOA:Q626I7" /db_xref="InterPro:IPR001623" /db_xref="InterPro:IPR002939" /db_xref="InterPro:IPR008971" /db_xref="InterPro:IPR018253" /db_xref="InterPro:IPR036869" /db_xref="UniProtKB/Swiss-Prot:Q626I7" /protein_id="CAP22286.1" /translation="MRILNVSLLVLTAFLVDFVECGRDFYKILGVSKNANANQIKKAY RKQAKELHPDRNPDDEMANEKFQDLSAAYEVLSDKEKRAMYDRHGEEGVAKMGGGGGG GHDPFSSFFGDFFGGGGGNGGDEGTPKGADVTIDLFVTLEEAYNGHFVEIKRKKAVYK QTSGTRQCNCRHEMRTEQMGQGRFQMFQVKVCDECPNVKLVQENKVLEVEVEVGADEG HTQIFHGEGEPHIEGDPGDLKFKIRIQKHPRFLISVTGIEIIELKVDELVELLLEGIR FERKGDDLYTNVTISLQDALNGFEMEILHLDGHMVKVQRDKVTWPGARLRKKDEGMPS MENNNKKGMLIVTFDVEFPKTELTDEQKAQIIEILQQQGIKPRAYNGL" assembly_gap 420284..420452 /estimated_length=169 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(423982..424078,424124..425412,425777..425911) /gene="CBG00964" /locus_tag="CBG_00964" /standard_name="CBG00964" /product="Protein CBG00964" /note="contains similarity to Pfam domains PF12999 (Glucosidase II beta subunit-like) , PF07915 (Glucosidase II beta subunit-like protein) contains similarity to Interpro domains IPR018247 (EF-Hand 1, calcium-binding site), IPR012913 (Glucosidase II beta subunit-like)" /note="Predicted" /db_xref="GOA:A8WP81" /db_xref="InterPro:IPR002048" /db_xref="InterPro:IPR009011" /db_xref="InterPro:IPR011992" /db_xref="InterPro:IPR018247" /db_xref="InterPro:IPR026874" /db_xref="InterPro:IPR028146" /db_xref="InterPro:IPR036055" /db_xref="InterPro:IPR036607" /db_xref="InterPro:IPR039794" /db_xref="UniProtKB/TrEMBL:A8WP81" /protein_id="CAP22287.1" /translation="MLLQLLVLLVPAALGEDVTQRQLKPVKGVPHSRLHLYQSSTTDT FRCLDGSQTILYSQLNDDYCDCKDGSDEPGTSACGNAFFYCSNVGHKGNFIPTNRVND KLCDCCDGSDEYDSGVECPNICDELGRAARIEREKIASVARKGFQKRQELAKEGQALR DSKLKDVEPLRQERANIEPERARLETEKKAVEEVEKKLQDEHRNQWEAVRIEKKKLRA TDWFDELDLDKSGKIDREELRQNLFLDNDHDGFVSEDEVKSYLTIDEADFEHFQSSMY DRLKEARHQHREEMKYKEEQEKEKAKALENAPDDDDLLAEEDRHEEEEEDPEDVRAQE DDKMPAYPPEINEASEKAREARRLFDEVNEKVQDLDAKIREAEDFTNSDYGENYEWAA LKDKCFDRNVQQYTYQFCPFGQNTQKDVGAYGGTSLGNFKNWSGGETNKYSKMHFGDG QQCWNGPKRSTDISIECGEENELVEVTEPAKCEYLFTFRTPLACTDPDKEIVHDEF" assembly_gap 427024..428023 /estimated_length=1000 /gap_type="between scaffolds" CDS complement(join(435754..436059,436109..436456, 436938..437255,437316..437456,437831..437899)) /gene="CBG00962" /locus_tag="CBG_00962" /standard_name="CBG00962" /product="Protein CBG00962" /note="contains similarity to Pfam domain PF01926 50S ribosome-binding GTPase contains similarity to Interpro domain IPR006073 (GTP binding domain)" /note="Predicted" /db_xref="GOA:A8WP82" /db_xref="InterPro:IPR006073" /db_xref="InterPro:IPR009019" /db_xref="InterPro:IPR015946" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR030388" /db_xref="UniProtKB/TrEMBL:A8WP82" /protein_id="CAP22288.1" /translation="MLIQRIHVACRLFSTASTSASFEKTPTQPLTKCLQLAVIGAPNV GKSLLTNSLVRCPLSAVSSKMDTTTRNISASICTDSTQLVFTDSPGAVSTSHVRQTMK GTSATSGDRVLQDPERALQRAQHILVVQDSTAPGAYIHHRVLHMLHRYSHVPSTLVMN KIDLVMRRTDLLPLVEILTNGQLANNQQITTKPAQIGRLGTSLSSSSPNSSHQPTDDK WKAQFRELIQKPTWKCSYNDTRALFRTICGWSGFERVFFVSSLSGEGIDELRTHLMNI SPDGEWKMDQGMPTGESAQQLCIDSIRAAVLDTTPSNVAYSVQVRISEWEEQGEVLQI VGEIRCQKPRDGSLVIGKGGKRISEIGRRVNEHLHSLFQRQLYARLIVTCNGKLITQE K" CDS complement(join(438081..438233,438513..438641, 438929..439145,439264..439407,439513..439735, 439783..439843)) /gene="CBG00961" /locus_tag="CBG_00961" /standard_name="CBG00961" /product="Protein CBG00961" /note="contains similarity to Pfam domain PF00398 Ribosomal RNA adenine dimethylase contains similarity to Interpro domains IPR011530 (Ribosomal RNA adenine dimethylase), IPR020596 (Ribosomal RNA adenine methylase transferase, conserved site), IPR001737 (Ribosomal RNA adenine methylase transferase), IPR020598 (Ribosomal RNA adenine methylase transferase, N-terminal)" /note="Predicted" /db_xref="GOA:A8WP83" /db_xref="InterPro:IPR001737" /db_xref="InterPro:IPR011530" /db_xref="InterPro:IPR020596" /db_xref="InterPro:IPR020598" /db_xref="InterPro:IPR029063" /db_xref="UniProtKB/TrEMBL:A8WP83" /protein_id="CAP22289.1" /translation="MGKTSKVKKTKAGTSTGNVQSLPFNTDKGQHILKNPGVVNAIVE KSALKSTDTVLEVGPGTGNLTVKMLEVAKTVIACEIDPRMIAEVKKRVMGTPLQTKLQ VNGGDVMKQEWPFFDVCVANLPYQISSPFVQKLLLHRPLPRYAVLMFQKEFADRLVAR PGDKDYSRLSVNVQLLAKVEMLMKVKRTEFRPPPKVDSAVVRIAPKNPPPPVNFVEWE GLLRLCFMRKNKTLLAIFRLSNVIEVIEDNYRKVCSMKNKPLPKDFNMKKLIEETLTA SGYAENRARKMRVEDFLALLLAFNKADIHFLS" CDS join(440017..440062,440105..440232,440282..440406, 440451..440688,440734..440884,441470..441681, 441831..442136) /gene="Cbr-tag-124" /locus_tag="CBG_00960" /standard_name="CBG00960" /product="Protein CBR-TAG-124" /note="C. briggsae CBR-TAG-124 protein; contains similarity to Pfam domain PF01416 tRNA pseudouridine synthase contains similarity to Interpro domains IPR020097 (Pseudouridine synthase I, TruA, alpha/beta domain), IPR001406 (Pseudouridine synthase I, TruA)" /note="Predicted" /db_xref="GOA:A8WP84" /db_xref="InterPro:IPR001406" /db_xref="InterPro:IPR020095" /db_xref="InterPro:IPR020097" /db_xref="InterPro:IPR020103" /db_xref="InterPro:IPR041707" /db_xref="UniProtKB/TrEMBL:A8WP84" /protein_id="CAP22290.1" /translation="MGTKRAGYEIKNNKEAKKPRIFDFSAHPRRKIAIQFFYLGWEHD GLVQQPNTQNTVEHHLMEALIKTHIIEDSIKCDFSRCGRTDKGVSAFKQTAAFLARST CPDHPNVFWSDSTAEDVKNSYKSKDEELPYIKMLNGVLPKTIRVFAWAPVAPTFNARF DCNRRTYKYSFPKAGLDLEKMREAAKLLIGEHDYSNFCQIDMNKMRLEQSYTRKIYDV TVEQVSTHSENDIYSMVELTVSGSGFLWHMIRYIVTVLQEVARGNEQPSLVSDLLDLS KYPSRPHYTLSSDTPLCLFDCGYKQEDVQWHIHDATLKTTVSGLQKSWATYQTRCRMM ENMIGELAGMTELSSEDVRKGLHEFVQDRPISQNYVKFEKRNKCESLDAKKAKIQMKK EAKIEENGV" CDS join(442710..442843,443544..444001,444361..444438, 444738..445375,445556..445680,446761..446923) /gene="Cbr-pme-2" /locus_tag="CBG_00959" /standard_name="CBG00959" /product="Protein CBR-PME-2" /note="C. briggsae CBR-PME-2 protein; contains similarity to Pfam domains PF02877 (Poly(ADP-ribose) polymerase, regulatory domain) , PF05406 (WGR domain) , PF00644 (Poly(ADP-ribose) polymerase catalytic domain) contains similarity to Interpro domains IPR004102 (Poly(ADP-ribose) polymerase, regulatory domain), IPR012317 (Poly(ADP-ribose) polymerase, catalytic domain), IPR008893 (WGR domain)" /note="Predicted" /db_xref="GOA:A8WP85" /db_xref="InterPro:IPR004102" /db_xref="InterPro:IPR008893" /db_xref="InterPro:IPR012317" /db_xref="InterPro:IPR036616" /db_xref="InterPro:IPR036930" /db_xref="UniProtKB/TrEMBL:A8WP85" /protein_id="CAP22291.1" /translation="MSIINDENGKPYKVHLCKTNIAQNNNKFYDMEMLDNGGSGAHRF SVKLINGRIGYRGVTHLKDFGDLVKAKSFFEAKFFEKTHLHWEERQDEPVPNKYVVVD LMDNNSMKKEEEEEEDVKKEEEEEEEEKKPQTKKTRGRKKKAEEEVEVKKEESEEEEA EDVDQKVKDLMRCICDEDVHLGLLKQLKFNEAYGKPIDCLSLAQLQTGYDILATIETS IGGKKAARSGTRSRAAPTPSKNPGASTHDTNKYYSLIPHSFGFQVPPKIDTLAKVEAE RELLDALKGSIEASMEVKDVKKEKSNKDIYQRLYERLPCHLEPVSEDVAGKIGECLKM RGPTHFFKLSYLDAFELKNPEEAPKPAKRARKSAPSTTKRLLWHGTRVTNVFSILMNG LQMPEGDRCGLMFGNGVYFANVPTKSANYCCPEVSKRVFMLLCEVETSNPLVLYQSEP DADDMMAKKKKLSVYAAGKHRPTETVEINEIPAFKSGLEQIEEESQLLYDEYVMFDQD RFKIKYVVEVKVEKITAAEMRGQ" CDS join(447295..447352,447607..447831,448035..448133, 448228..448397,448810..448932,449901..449987) /gene="CBG00958" /locus_tag="CBG_00958" /standard_name="CBG00958" /product="Protein CBG00958" /note="contains similarity to Interpro domain IPR019265 (Protein of unknown function UPF0568)" /note="Predicted" /db_xref="InterPro:IPR019265" /db_xref="UniProtKB/TrEMBL:A8WP86" /protein_id="CAP22292.1" /translation="MSRRKLRGVEYDRDYVNFDDDTEIRRLIATVEEVHLKRRGENWA AQMLDESDVQKWTAELEQYFRDFGAPDGCSRAAAVDYVLSAAVEKIYEQKGGDDELSS ARLKSEVEKVLEAHKDSQNPLNRLDYTSPKFAENARALCSILGISAHHPDPKILMKAA CLYISENLSEDVIAEETEEVLKKKKLLDIKDFPIGMVAPKNGAVHFSARLLRLISLKQ LRDVSKMINETLVEIQNLTMDMSKKANYEQVQYGH" CDS join(450220..450336,450964..451130,451535..451684, 451966..452101) /gene="CBG00957" /locus_tag="CBG_00957" /standard_name="CBG00957" /product="Protein CBG00957" /note="contains similarity to Pfam domains PF01202 (Shikimate kinase) , PF00004 (ATPase family associated with various cellular activities (AAA)) , PF07728 (AAA domain (dynein-related subfamily)) contains similarity to Interpro domains IPR003959 (ATPase, AAA-type, core), IPR000623 (Shikimate kinase), IPR011704 (ATPase, dynein-related, AAA domain)" /note="Predicted" /db_xref="GOA:A8WP87" /db_xref="InterPro:IPR020618" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8WP87" /protein_id="CAP22293.2" /translation="MATPETRHKPNILITGSPGTGKSTLSQQVAEKLGFEFIEISKEV RENNLQGEFDEQYSCHVLDEDKLLDHISDRMDSDDGGIVVDYHGCDLFPERWFDVVVV LRCATEKLYDRLQSRGYSKFKIKENVECEIFGTLLEEAKESYKEEIVHELQSETPDQM EENLDRICEWAAAFKNSGGQGPQSDEMDQ" CDS join(452349..452441,452801..452969,453034..453161) /gene="Cbr-mrpl-53" /locus_tag="CBG_00956" /standard_name="CBG00956" /product="Protein CBR-MRPL-53" /note="C. briggsae CBR-MRPL-53 protein ;" /note="Predicted" /db_xref="InterPro:IPR036249" /db_xref="UniProtKB/TrEMBL:A8WP88" /protein_id="CAP22294.1" /translation="MSQVWSKIRYGVRWNPAERLALATRALNLQKVKSIDISMDPLHH DNLSIRTFWHSIMAPKVRLTNPNVRVKTEIRNDRRGPFFVTTLDDGSKLHISTENMTA MDVIMNFNRLTGQPELGKAGTRPRAKI" CDS join(453558..453617,453669..453955,454004..454234, 455413..455508,455557..455717,455829..455976, 456262..456351,456403..456495,456548..456857) /gene="CBG00955" /locus_tag="CBG_00955" /standard_name="CBG00955" /product="Protein CBG00955" /note="contains similarity to Pfam domain PF01909 Nucleotidyltransferase domain contains similarity to Interpro domain IPR002934 (Nucleotidyl transferase domain)" /note="Predicted" /db_xref="GOA:A8WP89" /db_xref="InterPro:IPR002934" /db_xref="UniProtKB/TrEMBL:A8WP89" /protein_id="CAP22295.1" /translation="MTPHQLNTAAIGLLLHLENTVPSKNEHLQELHWDLQKFHKDHMQ SSVMRARKNRYIDLIRDFLKSEDLKKNFPPGIFVDRLVVFGSFATHCASKFSDLDLCV CMRYNGFCDPNRKPPPIWALRSIHYHLIHHRRTLSEKFDGAKIEDVEFISNAKVPILR FKIDGVPVDLSASFSDRPPKSCLAAKLINAYCQLDDRFAILVTFLKMWLKSEGDPVDH LKDFPNSYSFILLLIHVLQWYRIVPNLYQTHAYLFNHHKATSWDDVNLESDEFWMPLD QKTIICHQQRPSKHLTVVQLLYLFGTQYTTKNRLDEYSFNMKTGALQLKKSREYSLSI IDIYDENNPGRSARDTEYLVEALRLLTRTITDPRHGMLQSILEITSQQLYEDPERPSI LAPDPTETTQKTCIKMIREVINTTISEDIKTDYFVDILTWEPAENILEISAKIRCDTR RVVELFNGPKSTEIQKLAEESLQKLFELELDLKLIVCFQDD" assembly_gap 459079..459088 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(460561..460731,460783..460893,461602..461723, 461773..461837,462625..462839,463400..464010, 466111..466426) /gene="Cbr-ugt-58" /locus_tag="CBG_00954" /standard_name="CBG00954" /product="Protein CBR-UGT-58" /note="C. briggsae CBR-UGT-58 protein; contains similarity to Pfam domains PF04101 (Glycosyltransferase family 28 C-terminal domain) , PF00201 (UDP-glucoronosyl and UDP-glucosyl transferase) contains similarity to Interpro domains IPR002213 (UDP-glucuronosyl/UDP- glucosyltransferase), IPR007235 (Glycosyl transferase, family 28, C-terminal)" /note="Predicted" /db_xref="GOA:A8WP90" /db_xref="InterPro:IPR002213" /db_xref="UniProtKB/TrEMBL:A8WP90" /protein_id="CAP22296.2" /translation="MLKCWLLLSIIGWVTAGDVLFIPSTLYPVHGQTMAVLAKELVDR GHQVTWLEIGTKQSDLVLPSEVTREFWPAQFGDSTLQDIYQYRNHSSHSQLWNPEHLN ENEQTTGWLASIRLCDSVLTRSRSKFDRLVEKKFSTVIVDDLYNPCGVLIAGLKKSVY IYWSITGLRTESAWANQSPSPPSYLPVAGTGLTDDLTFSERVYNVASYLKQLYLHQHI VQPRVDAVFQKHYPGVSTMFDIERNASINFVNTPPIFDFSRPYMPRVNFVGAIQCRKA KELPKEFATKISEHPEGFVVLSTGFSAQWTKSPESTRQAYLKAFKSFPKLLFIWQFNG KLPEGSKAPSNLITKPWLQLQDLLGHEQCRCHVSHGGLNSVIESVYHGVPVVGVPLTA RGYDNLLRITARDSGVMIEKSEFNGDTLTAAIREVTKNEKYKKEMLIFQDMVIDVPYT ELYHAAFWVEFIERHQEVPHARSGADHLNFLQYFLVDVIAFFFFVIFCTLSVIFYAIH TVIRTIGSVINGIRGVPRVKVSKGKKTN" assembly_gap 464355..465145 /estimated_length=791 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(466781..466853,466902..467143,468128..468712, 468817..468989,469328..469329,469437..469588) /gene="CBG00953" /locus_tag="CBG_00953" /standard_name="CBG00953" /product="Protein CBG00953" /note="contains similarity to Pfam domains PF08028 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02770 (Acyl-CoA dehydrogenase, middle domain) , PF00441 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02771 (Acyl-CoA dehydrogenase, N-terminal domain) contains similarity to Interpro domains IPR013107 (Acyl-CoA dehydrogenase, type 2, C-terminal), IPR006090 (Acyl-CoA oxidase/dehydrogenase, type 1), IPR006091 (Acyl-CoA oxidase/dehydrogenase, central domain), IPR006089 (Acyl-CoA dehydrogenase, conserved site), IPR006092 (Acyl-CoA dehydrogenase, N-terminal)" /note="Predicted" /db_xref="GOA:A8WP91" /db_xref="InterPro:IPR006089" /db_xref="InterPro:IPR006091" /db_xref="InterPro:IPR009075" /db_xref="InterPro:IPR009100" /db_xref="InterPro:IPR013786" /db_xref="InterPro:IPR036250" /db_xref="InterPro:IPR037069" /db_xref="UniProtKB/Swiss-Prot:A8WP91" /protein_id="CAP22297.2" /translation="MLSRLARTQISRSALLSQTRQLSFDLNETQKEIQAAALKFSKEV LVPNAAKFDESGEFPWEIIRQAHSLGLMNPQIPEKYGGPGMTTLETTLIVEALSYGCT GLQLGIMGPSLAIAPVYIAGNEEQKKKYLGALAAEPIIASYCVTEPGAGSDVNGVKTK CEKKGNEYIINGSKAWITGGGHAKWFFVLARSDPNPKTPAGKAFTAFIVDGDTSGITR GKKEKNMGQRCSDTRTITFEDVRVPEENVLGPPGAGFKVAMSAFDMTRPGVAAGALGL SWRCLDESAKYALQRKAFGTEIANHQAVQFMLSDMAINLELARLITYKSATDVDNGVR SSYNASKSASQRIPRIRRLLMLFRCNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRIVI SRMLLGHVAQNGTSRM" CDS join(472819..472922,472965..473096,473774..473870, 474744..474890,475121..475200,475250..475308, 476163..476385,476992..477163) /gene="CBG00952" /locus_tag="CBG_00952" /standard_name="CBG00952" /product="Protein CBG00952" /note="contains similarity to Pfam domain PF02485 Core-2/I-Branching enzyme contains similarity to Interpro domain IPR003406 (Glycosyl transferase, family 14)" /note="Predicted" /db_xref="GOA:A8WP92" /db_xref="InterPro:IPR003406" /db_xref="UniProtKB/TrEMBL:A8WP92" /protein_id="CAP22298.2" /translation="MANHDICTKTMWALSVPLAVLLVLFIALTAYATYSFHIFVPLAP DNDIDCAEMFNKSSENYLSYIENRTVLVPTRNDKNCFQIRRRRYLPSDMPKSMAGNHN MFFIRVVKKMFRLGDCMVNVLVPRELFNTSTAHGTLSAHRRCLKEIDEFDWKHAVITA EHDIPLHSTKFLSRRSRRLRDMVEINGVHFKEETLLSADPNDTSSQLYQVSRNWIQHL CSMATISHSQHKTLYNYLMKTPDFNLPSDEHREIHVLEKGCDTNQYDVDGSCLYAMQD FPAIRNTTRLFIRADPNYDFGFIQCVHEVVFERTFFDPISNKNAMNYLYGSHKNLIND YRN" CDS join(477504..477573,477621..477708,477776..477909, 478004..478284,478824..479072,480064..480344, 480529..480697) /gene="Cbr-zfp-2" /locus_tag="CBG_00951" /standard_name="CBG00951" /product="Protein CBR-ZFP-2" /note="C. briggsae CBR-ZFP-2 protein; contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:A8WP93" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR036236" /db_xref="UniProtKB/TrEMBL:A8WP93" /protein_id="CAP22299.1" /translation="MEELMLEDPNATVLYEEEVTTATDISTDIPSTSRAWSNEKPLGY ELTDTKCFKTPSGVQKTATIPRETLSKEPLITEQVVEMDGEYSMEGLDMHYVPNTSTS QAPPPTVAPTVPAQPQPLRRLGIRIGERILRFKVINASDAPEAPIDPSVDGWIADPKP VTTPKSLAGLYHCTQCKTYFGNKEVYQRHVLDSHGDPRPFRCFNCGMRFASKTSMTHH LKDHSLLKPMYSCDYCPRIFSKLQSKLQHHKMHFTRSTCRQCMRFFTTEEALTNHVNT AHPPTFDQQPPTEELLPNGKTARFNCTFCNLRFHFKKDMLVHERVHTGEKPYSCGYCN KSFAQSQALTAHIRTHTKEMPFGCGKCSKRFRDNSSLRKHELAVHTDHPIVRPITGLY SEEIQKQVEIQREQRRKQEMMISQRAPLFRM" assembly_gap 481625..481634 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" tRNA 490198..490270 /gene="CBG28695" /locus_tag="CBG_28695" /standard_name="CBG28695" /product="RNA transcript CBG28695" /note="C. briggsae predicted tRNA" CDS join(505982..506050,509233..509410,511206..511309, 511681..511834,512991..513282,513602..514016, 516651..516895,517215..517629,523171..523329) /gene="Cbr-exc-7" /locus_tag="CBG_00948" /standard_name="CBG00948" /product="Protein CBR-EXC-7" /note="C. briggsae CBR-EXC-7 protein; contains similarity to Pfam domain PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) contains similarity to Interpro domains IPR000504 (RNA recognition motif domain), IPR006548 (Splicing factor ELAV/HuD), IPR002343 (Paraneoplastic encephalomyelitis antigen)" /note="Predicted" /db_xref="GOA:A8WP94" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR002343" /db_xref="InterPro:IPR006548" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR034775" /db_xref="InterPro:IPR035979" /db_xref="UniProtKB/TrEMBL:A8WP94" /protein_id="CAP22300.2" /translation="MTMEALLTPKTPNMPTGPVQTTQNSYSGTQRYCTAPNVDIGESK TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRA VSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELEGIFRPFGQIITS RILSDNVTGLSKGVGFVRFDKKDEADTAIKTLNGSIPTGCSEQITVKFANNPASNNPK GLLGELEGLQQAATTLVPLSTILGAPTLRAAAGGIGPMHHTPITSKYRYSPMGAITAV SQPTATLPADYLTTSALLQMSQLNALAGLTPFTATAVPDFTASLLAHQQQQQAAAQQQ VAQTASPPAANGAGIAAHAQLSALSASVAATLPPSDTAGYCLFVYNLAADTDDTLLWQ LFSQFGAILNVKADTAIKTLNGSIPTGCSEQITVKFANNPASNNPKGLLGELEGLQQA ATTLVPLSTILGAPTLRAAAGGIGPMHHTPITSKYRYSPMGAITAVSQPTATLPADYL TTSALLQMSQLNALAGLTPFTATAVPDFTASLLAHQQQQQAAAQQQVAQTASPPAANG AGIAAHAQLSALSASVAATLPPSDTAGYCLFVYNLAADTDDTLLWQLFSQFGAILNVK ILRDISQKCKGYAFVSMSTYTEAYNAMVSLNGTNLAGKPLQVVFKSSTPYRA" assembly_gap 515591..515672 /estimated_length=82 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(522093..523034) /gene="CBG00949" /locus_tag="CBG_00949" /standard_name="CBG00949" /product="Protein CBG00949" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP95" /protein_id="CAP22301.1" /translation="MVVTIIKHKPRNKRKALSALKDENGGKKSKLSEYSSKQAVDDII EFVDDMSNPLYELLSNDFKSKKEFTVNDIAMIFKSLAETILKLQSQNTMLKNQNCILN ANLSNLTEKVDGLEENLKLLPSQPKESPKPPTTLIKTFASAVASTISAPESQITFMRA ASLANSEDARKSNVIIKNIDLSEEAIEKAEFAFKIAKNCGTSTPSVFRIPHPAKGPPI VRLAFKFKEEARTVLTKFNSIKASIQGCLNASPRPDLSKPELEKYRQSWKTVIQKNNE AGQTIYTVRNLEVVKVVYRENQEPWPWAKKHSIPENF" CDS complement(join(526520..527279,527429..527637)) /gene="CBG00947" /locus_tag="CBG_00947" /standard_name="CBG00947" /product="Protein CBG00947" /note="contains similarity to Pfam domain PF02389 Cornifin (SPRR) family contains similarity to Interpro domain IPR003302 (Cornifin (SPRR))" /note="Predicted" /db_xref="InterPro:IPR011042" /db_xref="UniProtKB/TrEMBL:A8WP97" /protein_id="CAP22303.1" /translation="MTESQKLRIAESPNRRISEWQNLRISESQNLRISKSQNLRISDS QNLRISEFQNLSISESQNLRISGFQKISESQNIRISESQNLRIPESQNRRISESQNRR IAESQNRRISESQNLRIAESQNTRISESQNLRIAESQNSRISESQNRRIAESQNRRIS ESQNLRIAESQNTRISESQNLRIAESQNSRISECQNLRIAESQNLRISKSQNLRIAES QNTRISESQNLRIAESQNSRISECQNLRIAESQNLRISKSQNLRIAESQNTRISEYQN LRIAESQNSRISESQNFRMPESQNRRISESQDLKISESFSQKFQKS" CDS join(527773..527796,527841..528064,528798..529151, 529200..529314,530739..531001,531353..531647, 532332..532475,532535..532642) /gene="CBG00946" /locus_tag="CBG_00946" /standard_name="CBG00946" /product="Protein CBG00946" /note="contains similarity to Pfam domains PF00782 (Dual specificity phosphatase, catalytic domain) , PF00102 (Protein-tyrosine phosphatase) contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000340 (Dual specificity phosphatase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WP96" /db_xref="InterPro:IPR000242" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="InterPro:IPR016130" /db_xref="InterPro:IPR029021" /db_xref="UniProtKB/TrEMBL:A8WP96" /protein_id="CAP22302.2" /translation="MKQLISNQEDVPQANSLKLDKTQFVEVNSDEKLSEKSQNCVTWS QKTLKAAKISKITQEFRDCKEYKPDVKTSVSEKMSEKNRYNHIVCANENRVVLKDRDS SNDYIHASWMEMPDGVQFISTQGPIKNTITDFWHMIYTEKCSVIVMLCQYVEDEQEKC QKYFLENGGEKEYGDYKVKIVEKTVEIFSPVKVTVLQVQKKNSSTKHLVHHYWYHDWH DQVAPLDPAPMIKMYKAVIKKAGSKPIVVHCSAGVGRTATFVGIHLGYVMVRENASVE MVDILKRLRKMRLGAIQSQLQYVYLIILIIHLFIENKIVKRDELFETLLKKYADVTRK VTKAIMDEEERKQRQRKKEEAKEAKEREKEAQWEKFRDRERETKKENDKEKDKEKDTK KEKEVEAPALREDKKKVPEPKTLESPSKPNWKRDPPFRPSRRPSAILVEEKTSREGAS KYEGSIAEERSRNPKQKSVYMKWPTSSKEKRSKHETNKTKMGKKNTMRKGAKKNRPTY " assembly_gap 529973..530287 /estimated_length=315 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(534071..534140,535406..535578,536353..536523) /gene="CBG00945" /locus_tag="CBG_00945" /standard_name="CBG00945" /product="Protein CBG00945" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WP98" /protein_id="CAP22304.1" /translation="MWSTFGFVFFYTFVISVDSGSVGLCRTECVEQNSRKIVRVHLKD DLVMAGLCSNKTDLSQGSIVTPYVCHRNIGLWTLDELDQEGIVNFEKLCPTPDQYPYE LRATCPRLNENRDETPMALDVDEYPNSSGDTPLSI" CDS complement(join(536903..536993,538587..538712, 538827..539017,539758..540293,544242..544402, 546218..546475,547669..547871,548035..548313, 549452..549502)) /gene="CBG00943" /locus_tag="CBG_00943" /standard_name="CBG00943" /product="Protein CBG00943" /note="contains similarity to Pfam domain PF13000 Acetyl-coenzyme A transporter 1 contains similarity to Interpro domain IPR024371 (Acetyl-coenzyme A transporter 1)" /note="Predicted" /db_xref="GOA:A8WP99" /db_xref="InterPro:IPR004752" /db_xref="InterPro:IPR024371" /db_xref="InterPro:IPR036259" /db_xref="UniProtKB/TrEMBL:A8WP99" /protein_id="CAP22305.2" /translation="MEDEKWIRREEKKKNQKNFLENPFFASFAPNFVNSRNYHRTTLP AMTERVRSRHKRRLPHTSEDVMAFEPDVDFSTAGGHFPRVFLRQDDDGESSDGYGDED LQHLLPDPNVDPNANWFKRTHATLKGDISSILLLLFLYLLQGVPLGLIGAIPLLLSSK HASYSSQAIFSFAYWPFSMKLLWAPIVDSVYSKRLGRRKSWMVPCQYLIGAFMLYLSF KVNDIMGENGGSPNVVFLMLIFLPLNFLAATQDIAVDGWALTMLSKKNVGYASTCNAV GQTAGYFLGNVVFLALESAPFCNEFLRSKDNQQDTGMVDLAGYVFFWGWVFIVTTTLV LILKREVDMSISSNNTTASGDPAPEDEELELGVVESYTVLYKIMKLKPVHYMIAILLT GKLAFAATDGMTSLKLIAMGIPKDRLASIAVFLTPMQILLPWMIGKWTAGPRPLNIFL LAFPYRIFIGGVFAALIWWTPHFQLPDGKFEYSVYFVWISGYMFHQLATYSMFVSMMA FIAQISDPRIGGTYMTMLNTLNNLGGNWPVTVVLAVTDWFTYKDCVVKGSKDVLYACN TKVLADQCAAGGDVCEVAIDGYFISVAACSVIGVIWYKVFFNKLKYLQKIPRAQWRVF PSRAVAN" CDS join(542321..542399,542610..542700,542819..542984) /gene="CBG00944" /locus_tag="CBG_00944" /standard_name="CBG00944" /product="Protein CBG00944" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPA0" /protein_id="CAP22306.1" /translation="MGMTGRLLLFVVVVVMVFVMASEAMRAKRDNCKSEKLRELVLET VGIYPHQYSYQAKYLKQQAEERFGFWWSAVIVSERGGYGMSAVYDQYKNTSCEMMLFD TYYWIGRTC" assembly_gap 545322..545919 /estimated_length=598 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(559121..559157,559212..559251, 559791..560229,560532..560662,560923..561702, 562718..562847,562890..563008,563056..563116)) /gene="CBG00939" /locus_tag="CBG_00939" /standard_name="CBG00939" /product="Protein CBG00939" /note="contains similarity to Pfam domain PF00024 PAN domain contains similarity to Interpro domains IPR003609 (Apple-like), IPR003014 (PAN-1 domain)" /note="Predicted" /db_xref="InterPro:IPR003609" /db_xref="UniProtKB/TrEMBL:A8WPA1" /protein_id="CAP22307.2" /translation="MRPLVLVAISLLGSCFADSSVLRPCFERYANHRLVNLRPYHSEW RMRTEDMCLLFCAQSASRCRSVVYDTVQHICHYFSDEGVDQAILSAKMTYLRVVSQSC LQSNAEVASDPNISPSDAPPVLLPTSGFPQNNDIIQQELSIPQPPMETPETVTFESPE TTTVVTTPMSNDDDVLEVSTTQKTVEEDVKIDESELDAELKSVMEPSQFTGSFSDSES QIDNNGVYRDKTSSERRWMDSMEKMDSKPSEIKKSIDQKLEALKIEDSEKYEKLMGTS AEKSEEKSAEKEVQELKQNLRYGAKVIKFDEEAAFRKQSELRRKPVGRPNLRPVTISS TSYIQKAKSFLDELNETNDEIEGGNVITTECQSDDVDVWIAFENSEQADEHEDSETDS NVPSRKECQKICQEKNCRSFTYFEKTHTCHLSSKSDGVTLQAPSSGDFTASTSTKFCY PRTFSVFDGCSNFVAFRDYSVRIEAVEEFDGLPRGYEGMQLCVELCVLSTRYTCRSST FNPITGKCRLLTEDSLSSPDEFKYDEFQKDVYFENGCTNAGNDHAVVAIKPKPKKMKK RVRKAKKLRRRH" CDS join(574257..574442,574872..575744,576250..576455, 576939..577188) /gene="Cbr-rhy-1" /locus_tag="CBG_00938" /standard_name="CBG00938" /product="Protein CBR-RHY-1" /note="C. briggsae CBR-RHY-1 protein; contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)" /note="Predicted" /db_xref="GOA:A8WPA2" /db_xref="InterPro:IPR002656" /db_xref="UniProtKB/TrEMBL:A8WPA2" /protein_id="CAP22308.2" /translation="MSSSPLLPPESSLLIMERLGEVRLYPSTSILDTNMTACLLTSAF LPDTVQMAAWPLLAWISLVIFGSISQYSIFTGLSLFRSVKELRSERSSKLDVLDIFRF IAILWVMLNHTGSEGRIDILERLPSADAFKSAMHDHPIFGALMGNSALGVEIFLVLSG LLAARSWLRNADQPFLNHWRSFITRRLLRLAPSMFIFVYIAAGPIMEALLPRYSSSMV SACGFWGILSHVTFTSNWQSTPTCMGYLWYLGLDMQLYMVAPIFLNLLHKSPKRGMIL TTVTIIASMFIRAGYCTAYGTCNKSDVDIPFISYPGQDAETLKSIYAGLWDMYSRPYT KCGPFLIGLLLGYVTFSSQHIMSAATSKALLRGSLFVAIVTIYAILPEYWNPDAGNTV YNTIYTAVFRSVFALAIAGMIAALYFRQEYRPTHPIFAILAKLTYNAYLLHMPVVYIF NWLPFLQTATSPIHLLLVLPFVATLSFLAALIFYLFVEAPIGHLTSQYATRLGL" CDS complement(join(577477..577579,578656..578858)) /gene="CBG00937" /locus_tag="CBG_00937" /standard_name="CBG00937" /product="Protein CBG00937" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPA3" /protein_id="CAP22309.2" /translation="MVGNVYIGANVKQRAQLGENYLDGVEVLAVNGRKNIGMIAQILK DHGANVVEFRWSLENIGEISRRIRRGSILLNVRSGSNLNGSRRPGTFWTRSTSNCFG" assembly_gap 579266..579275 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 580997..586032 /estimated_length=5036 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(586468..586725,587240..587522, 588070..588375,589288..589370)) /gene="CBG00936" /locus_tag="CBG_00936" /standard_name="CBG00936" /product="Protein CBG00936" /note="contains similarity to Pfam domains PF12656 (DExH-box splicing factor binding site) , PF01585 (G-patch domain) contains similarity to Interpro domain IPR000467 (D111/G-patch)" /note="Predicted" /db_xref="GOA:A8WPA4" /db_xref="InterPro:IPR000467" /db_xref="UniProtKB/TrEMBL:A8WPA4" /protein_id="CAP22310.2" /translation="MSILAEPKRKQKISVDPQNLTWKNDDQKFSKKLMEKMGWSEGDG LGRNRQGNQDAVKLRANTSGRGLGADKMADYDSTWISHHDDFADLLAALNKNKEEKTE DQTEEEREKAAEKISIELKSKSIRRRIHYQKFTRAKDTTNYSDSHKKGILGYGRLKSD ATSTTTEDVVENAAPQVQTEKSTDSENEKKEGNNTVSTLSVGDYFAAKMAALKAKREA AAKEIKTEIIEEIEIKTEIKEEISEESDEEKAKRKAEKKERKRLRREQRQREEEEEAE NMVEIKQEIKEEPIDEEIDEAERKRLKKVQIAN" CDS complement(join(<589792..590004,591166..591352, 591635..591754,592351..592635,592732..592925, 592979..593071,598241..598342,598400..598465, 599034..599129)) /gene="CBG00934" /locus_tag="CBG_00934" /standard_name="CBG00934" /product="Protein CBG00934" /note="contains similarity to Pfam domains PF00149 (Calcineurin-like phosphoesterase) , PF12850 (Calcineurin-like phosphoesterase superfamily domain) contains similarity to Interpro domains IPR024654 (Calcineurin-like phosphoesterase superfamily domain), IPR004843 (Metallophosphoesterase domain)" /note="Predicted" /db_xref="GOA:A8WPA5" /db_xref="InterPro:IPR004843" /db_xref="InterPro:IPR029052" /db_xref="UniProtKB/TrEMBL:A8WPA5" /protein_id="CAP22311.1" /translation="MSSELFQMSIERFLVFGSVIAWCVLSYCTAFWVESVDGYLVGNR RRVIAMWRIQCILTVLNVFAYGQLMRWFDDDAAREKVQDRRQMQFFRKRCSDFLLVFL FLGQAVYFMYYAPGFLQWLLFDLTSICAGIWTNMIAFVCGFGLVNLFAGKMKLFPYTA RILDLIGKVPYLHDLMWKRRSQIKFTLIITLILSVSMYLSRDWIVVKHKTIKIKNFTA DGNRLKLAVISDLHAGASVYSEQIHHVVEKVLENPVDAILIVGDMVDAPVEEIADRVT PILQLPVHAPTYFVTGNHEYYYGDVHEWLRFYEHGHITVLENESAMVKGICLAGVNDI SSPKSGILNHDMDLPKATQRCPKNTSQILMAHNPASIREFLVDHPQELSKVDLILSGH THAGQFYVVLPVVWFSLPYLWGLYEIPFGGQLMVTAGSLYQGPPMKMVGFSEVWILDL VG" CDS join(593573..593581,593634..593946,593998..594262, 594925..594993,595037..595296,595353..595526, 595901..596097,596426..596605,596771..597020, 597810..597904) /gene="Cbr-dpl-1" /locus_tag="CBG_00935" /standard_name="CBG00935" /product="Protein CBR-DPL-1" /note="C. briggsae CBR-DPL-1 protein; contains similarity to Pfam domains PF08781 (Transcription factor DP) , PF02319 (E2F/DP family winged-helix DNA-binding domain) contains similarity to Interpro domains IPR014889 (Transcription factor DP, C-terminal), IPR003316 (Transcription factor E2F/dimerisation partner (TDP)), IPR015648 (Transcription factor DP)" /note="Predicted" /db_xref="GOA:A8WPA6" /db_xref="InterPro:IPR003316" /db_xref="InterPro:IPR014889" /db_xref="InterPro:IPR015648" /db_xref="InterPro:IPR036388" /db_xref="InterPro:IPR036390" /db_xref="InterPro:IPR037241" /db_xref="InterPro:IPR038168" /db_xref="UniProtKB/TrEMBL:A8WPA6" /protein_id="CAP22312.2" /translation="MNQYQYDSRRPHTSSSGPKRYMATGLPRGNLFQDDGYGDQQWDD MPSAPSGGGGGGSTEKPTGLRHFSTKVCEKVKEKGLTNYNEVADELVADYFHSNVLKH VDVVVKTRIRHENIRRRVYDALNVLLAMNIITKNKKDIRWIGLPASASQEIARLEEEK TRREASIRAKKDALQEMVMQIVSYKNLVERNRRNEHRNGRPEQDTLLHLPFLIINTDK ETNVECSVSSDKSEFLFSFDKKFEIHDDFEVLKSEFHLEFAAKKSDFPLEMKLACGLD TGNPTDEELITAKSFLPSLHQAYVDEIVTTYKEREAEREEKEKQMLLLAQRQQQIAQM QYYDPETGSMGNRYNRQLQEHLIADEDRNAAAGIMERDEDLVVPMERNAVRGGPMYNS SGYSPQKTTAMRVIQQQPSATRRYYVQKGTGAPGPMGREMSPAIRTMSRPYTSTIPQQ RMAAGGGTVGAGGGPVKYYVPQPSGVGPGPSSSSMAPRYKIRTPSQSTPGQRVTYSAG AGGLSSAHLQPGQRIVTQRIVQSGGPHPPRTVVRKVIRKIVVNPGGGAKQSPAQQVIQ KKMMEQEMQDRKPDMPMTSAQAAAMIQHEPPSDYDYF" CDS complement(join(599620..599734,600303..600597, 601477..601600,603581..603919,607075..607172, 607336..607630,636571..636992,638472..638706, 639669..639864,640779..640927,641774..641993, 642123..642228,642284..642350)) /gene="Cbr-sec-5" /locus_tag="CBG_00928" /standard_name="CBG00928" /product="Protein CBR-SEC-5" /note="C. briggsae CBR-SEC-5 protein; contains similarity to Pfam domain PF01833 IPT/TIG domain contains similarity to Interpro domain IPR002909 (Cell surface receptor IPT/TIG)" /note="Predicted" /db_xref="GOA:A8WPA7" /db_xref="InterPro:IPR002909" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR014756" /db_xref="InterPro:IPR029175" /db_xref="InterPro:IPR039481" /db_xref="UniProtKB/TrEMBL:A8WPA7" /protein_id="CAP22313.1" /translation="MEENSNFGERLPPTVTGLSPTEGVPGTQITIRGENLGCDQSDVI MLFICGIDSLWSMKWKSPSKIIARVGAASRGPGEVRIVTKSGGKGTSNVKFRVFITQI GPLEESAVWVDETRTVPGREAIRSVPQIQDERDALGLVPSQKRIDQVMLSRDFPDCSG NLRMENFSPQWYLLENHADATIEDLRTAIKNMELAKQNDAKRSEEMHKANLYSLINCV DTLANLHQALEKGQNADHFAALGNISKLIKDSKLKAESVFADVLKRKDDADATRNALG VIVRFKFIFFLSSKIEESMKKGEYITILNDYTRAKSLYADTDVPLFRELMTEIDAKME VFKEEMKRKLIDTPLSYEEQSKLIKYLKILDPESDPTWDCITSYYVWLEKNLWELQEK FLEKAKIEDVESQQRFHQNPASSHFTKSNELQNFVTTLVELLLSKLPSFWKLANTYHA SSGSPNAIQRLEDINEMLTKLINVSSWLVLNALITKALPDSVLNQYSNQFAKWPPVSA DISRSNLQQSLKTTRSLIASLLENQFNLSHIAPLVELCMTVRLKLVSDFVECGIERIA LLAHRINWKQDILDRAQQTKTILPDYYENEICECLSRTRDALSTTGYPGEACLFSRDR FRDTIIDLFVHLITSIKICFDRLFTRQRPQALVLDEKPKKGGQEITTKKLLIAVGDIE FIIAKTLNNVGKKMQECGVKHVDQIQEKSRAKLSAFRTKMINDCIAMMGSAFQPLIAS ATYEYLPDDDDISDYAKEMILCSVLQQAELELYAPQLAVECLQHTVSTALDALLTHFS RLNQDTSPLIVTQIVIDLTGLEEALSSYATLAIRVQINSYRAGLVGRFDNLRLQQCLK NMRTTMRMALQSLEQHADTIDDDANNTSAI" assembly_gap 606128..606283 /estimated_length=156 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 608363..609362 /estimated_length=1000 /gap_type="between scaffolds" CDS 609714..610133 /gene="CBG00933" /locus_tag="CBG_00933" /standard_name="CBG00933" /product="Protein CBG00933" /note="Predicted" /db_xref="GOA:A8WPA8" /db_xref="UniProtKB/TrEMBL:A8WPA8" /protein_id="CAP22314.1" /translation="MSEIQKFRNSEIQKFRNSEIQKFMVIMGTIGTMGTMSTMGTLGA MGTMVIMGSTGAMGTMGISLIGESWDHGDNGYYRSYGYHGYYEYYGYYGYYRSLGYYG YYGFYGYYGFSKFIFFFLPNPNYFRKMGNFRSKNRLF" CDS join(610631..610715,610796..611318,611372..611426) /gene="CBG00932" /locus_tag="CBG_00932" /standard_name="CBG00932" /product="Protein CBG00932" /note="Predicted" /db_xref="UniProtKB/TrEMBL:G2J6B7" /protein_id="CAP22315.1" /translation="MGIMGSMGTMSTMGSMGSMGTMDTMDTMGFYGFYGYYGLYGYYG YFGYYGYFGYYGYYKDYGYHRDHGFYGFYGQCGYYRYYGYYVFYGYYGYYGYHGYYGY YGYHGYYGYFGYYGYYGYYGYYGYYGYCGFYGYYGSLSGYYEYYGFYGFYGYYGFYGY YGYYGYYKDYGYYGYYSNYFRKNGQFSIEKSTFLQFVVKFNVCIFSLKIVEFRPKMAQ NI" CDS complement(join(611435..611606,611712..611944, 612518..612581,613379..614070,615375..615854, 616058..616109,616351..616418,616967..617215, 617269..617529,617813..617861,618035..618066, 620109..620660,621173..621378,621380..621395)) /gene="CBG00931" /locus_tag="CBG_00931" /standard_name="CBG00931" /product="Protein CBG00931" /note="contains similarity to Pfam domains PF04161 (Arv1-like family) , PF02389 (Cornifin (SPRR) family) contains similarity to Interpro domains IPR007290 (Arv1 protein), IPR003302 (Cornifin (SPRR)), IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:A8WPB0" /db_xref="InterPro:IPR007290" /db_xref="UniProtKB/TrEMBL:A8WPB0" /protein_id="CAP22316.1" /translation="MYTNYIPSSSSDRAANVEFINSCSFLDTNQVCCGLCGEIVDYDK LLTEHLPHAHPEYQSQEMQLEEIPYTSWLKDRLKRESKFLENGFRNYDDPHQHQIGSS AGFGGAPRLYTRNLRQMRKVSQIRVNVNEMSMSQLETALKRKLIEKMGRKVPVSLVDR LHARCDICQAVVSLNKKFEVIHLVRHFNAWHPAEHRCSQEWKEVAALPNPGARHPLSL HDFAVVSTETDQNNLQCIWCGMFMDRAALGMHFSEIHTQQHFFSGFLTSFRFLAHLEA EIWSFEVLEIIVPNCSLCLQEMVMTARFMEKYGKDFGISLPDEFHLQSSKLGAKYSSE KAMDKAIEKHLKRIAMKGGADQSDGGGGGIDDDDDDQTISITNSQQSFGRRNRLKRKF VKPCFRQVCPPNSEFFEPKSACEWRCRLCNRFVYAAVISAGAIKHFKEFHPAEIDKMQ YELVKYVSVQKRANLDYVEPRYSYKLARLFQLFSTKLYTFLSEFQARLERIGDGSMEF VHPQLVECLICNLTYALHKPFNICRAIRHLRLKHPEVMPETSGKSISGAEIAETVNLK APVMTNPSTASTAAAAKKRPNIRFGDCITDPIELEKFRKENWDQQFDKVQVVYGIKKN DEPAFILLMDNEQMDEKTAMEMAEKEQENGKNLRISESQRLRISEVPESQESQNLRGS EAQNLRISESQNLRISESQNLRISESQNLRISESQNLRISESQNLRISESQNLRISES QNLRISESQNLRISESQNPRISESQNLRISESQNLRISESQNLRISESQNLRISESQN LRISESQNLRIPESQNLRVSESQNIINSESQNLRISDSQNLRISESQNLRISEFQNFR NSEFQNFRNSEFQNFRNSESPEFFEFRIFRCNSTPQTLGNSLWRQHTHNSTDKCDKTV DKYIEQDVVLVVIDLMLQYVQAYRHLLLNVRIQRPERLFVMFWLSHAAEVWIRERENR EEQTTMLADQEWMFYRCLLLSAVEISSFVFVILLFWKLKKDETVHTWRQMISLTMLGY YGEQWMGILKF" assembly_gap 612019..612159 /estimated_length=141 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 614190..615189 /estimated_length=1000 /gap_type="between scaffolds" assembly_gap 616801..616810 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 618200..618805 /estimated_length=606 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 619793..619972 /estimated_length=180 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 621876..622875 /estimated_length=1000 /gap_type="between scaffolds" assembly_gap 625781..626780 /estimated_length=1000 /gap_type="between scaffolds" CDS 626989..627252 /gene="CBG00930" /locus_tag="CBG_00930" /standard_name="CBG00930" /product="Protein CBG00930" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPB1" /protein_id="CAP22317.1" /translation="MSKSQNLRISESQNLRISESQNLRISEVSETQNFGISESQNLRI SESQNLSISESQNLRICESQNLRISEFQNLRISESQNFGISES" assembly_gap 628649..629648 /estimated_length=1000 /gap_type="between scaffolds" CDS join(<630197..630324,631033..631355,631551..631654, 631702..631776,632179..632354,633682..>633763) /codon_start=1 /gene="Cbr-srd-2" /locus_tag="CBG_00929" /standard_name="CBG00929" /product="Protein CBR-SRD-2" /note="C. briggsae CBR-SRD-2 protein; contains similarity to Pfam domain PF10326 Serpentine type 7TM GPCR chemoreceptor Str contains similarity to Interpro domain IPR019428 (7TM GPCR, serpentine receptor class r (Str))" /note="Predicted" /db_xref="GOA:A8WPB2" /db_xref="InterPro:IPR017452" /db_xref="InterPro:IPR019421" /db_xref="UniProtKB/TrEMBL:A8WPB2" /protein_id="CAP22318.1" /translation="NAMLIYLILKRTPLLMKSYSVYLMNFAFFDFATCIISFFSCQKV IFSGWSLIYIFHGPCKHVSSWFCYFCHCFECHTLAHSQWILLGSFMYRYDVLKGSTPT VQKMWRNSGAFYSMSLCFLVVYLFDISDSEELLRIMTDLHPEYHYDDGTGNISMFAPI TFISIMYMTTPCVPIYCAILYFRHHTLKILNNPSINLSPAAKISHQKLVRALTVQAGI PIFWLVASGIYSLAQFGFISGPIPENITFRLMDCIPMVSPIVTIAFIQPYRDGLLHLF HKGSSIFIPNTIGSSVVDVS" assembly_gap 633019..633607 /estimated_length=589 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 635101..636100 /estimated_length=1000 /gap_type="between scaffolds" CDS join(642598..642671,642817..643059,643115..643212, 643259..643369,644120..644319) /gene="Cbr-pir-1" /locus_tag="CBG_00927" /standard_name="CBG00927" /product="Protein CBR-PIR-1" /note="C. briggsae CBR-PIR-1 protein; contains similarity to Pfam domain PF00782 Dual specificity phosphatase, catalytic domain contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR020422 (Dual specificity phosphatase, subgroup, catalytic domain), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000340 (Dual specificity phosphatase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WPB3" /db_xref="InterPro:IPR000340" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="InterPro:IPR016130" /db_xref="InterPro:IPR020422" /db_xref="InterPro:IPR029021" /db_xref="UniProtKB/TrEMBL:A8WPB3" /protein_id="CAP22319.1" /translation="MSYHHNNHHRHRDNYRLPGKRFPDRWSIYDNVGRDIDGTRFVPF KTPLDSSFFHGKDMPEELQFSVRSLMELAKRANKQIGLVVDLTNTDRYYKKTEWADHG VKYLKLNCPGHEVNEREDLVQDFIKAVKEFVEDPENEGKLVGVHCTHGLNRTGYLICR YMIDIDGYTAADAISRFEYYRGHPMEREHYKVSLYEAELRKNQRKNEEASGDSEDVVE SKDSEEAATKDPEDVKEEESEEK" CDS join(647043..647049,647500..647577,648054..648764, 649518..650199,650966..651362,652348..652694, 652747..652963) /gene="CBG00925" /locus_tag="CBG_00925" /standard_name="CBG00925" /product="Protein CBG00925" /note="Predicted" /db_xref="GOA:A8WPB4" /db_xref="UniProtKB/TrEMBL:A8WPB4" /protein_id="CAP22320.2" /translation="MKVLILLFLGLLCRLSGSSSTPSNAMSEDSVFLRIAESLDAHSR LTASLNTFAELINPTKPYSALGKYFLLDDSIISELMNLDGTHATRIVEELTDSNNNLT VFNEKSKRFKMFQKLHQLINTTVIPGKREKDEVAAIIEGWDKFKFLDLGLLKYHKSVL ENLSYSDDAGVVEMRIRGAVAALTAIPTILEAITEGIPKLDGRHRVFEIFGDFEFLIS SLKAYKEGGSVGDDDHAGNLGKLFSKSQSYLTGNRVARMLTELAHSSGFPQTLVHLKQ DLDGQFFRKVLNKGEGLKLLKTILNPFFEVELVLSSIWNDLRSDAKPDAFKNSSDTVL RLLNWITSAGYTSEIEFQTSWTHLHRILKSEIPISDDDFLNNFKSLTEAFDEYTGLLK RVKDLKESKEYRAAINGVESIETLNHYSVSRIHIASVEHKNKYEEAMKEVKGVRDNFE KALDALVSMNETISAIKGKISSFSSWKLDETEKWLKQTSENLRKSTDQNLLSRMTPVF KFIDSSPQSPSDFADFARVCSVLAASVKTGMAKVEDLKTKLSNLKDDRYTKYIMEFNK YNVTEKFQSGSILFKLFDRVIKSSTDFETFFKNGDLLEIEIRNLNFSTSMRRGWLEKM KIFQSTKSKFFEMRDQILKRHEFYTPESIENLMSLRWLVENLADIPNPALDVSQWRDF AEEVENSNNSIAVTDFKSSFSKIFDLNYSAHQEKCSMAYTNYRALLRFLKSILAAEKV SQLTFWDYNKNWIKIGGFCFVTILINAVIYAVTIMNLERKAKESEESEELEHFNEMWE EFEKRKKGQFMGTY" assembly_gap 653279..653418 /estimated_length=140 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(656436..656636) /gene="CBG00924" /locus_tag="CBG_00924" /standard_name="CBG00924" /product="Protein CBG00924" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPB5" /protein_id="CAP22321.2" /translation="MPSFQHLLILLLLVIMSTAFILQDLPLERFERSGHHGSEELFAP ERHTRSRDVYRPGGGKFWQRYR" CDS join(674392..674484,675606..675732,676639..677107, 679272..679430,679640..679661) /gene="Cbr-aqp-2" /locus_tag="CBG_00920" /standard_name="CBG00920" /product="Protein CBR-AQP-2" /note="C. briggsae CBR-AQP-2 protein; contains similarity to Pfam domain PF00230 Major intrinsic protein contains similarity to Interpro domains IPR000425 (Major intrinsic protein), IPR022357 (Major intrinsic protein, conserved site), IPR012269 (Aquaporin)" /note="Predicted" /db_xref="GOA:A8WPB6" /db_xref="InterPro:IPR000425" /db_xref="InterPro:IPR022357" /db_xref="InterPro:IPR023271" /db_xref="UniProtKB/TrEMBL:A8WPB6" /protein_id="CAP22322.1" /translation="MVLDKLRAKFHIRKELVRAALAEFTGTFLLCLIGLSVVAQKVLP RPEVNEFIGVNVGFGIAIVFGVAVSAKLSGGHINPAVSLAFLTVGQITVVQFIAYFFA QFLGAFFGAAVVYAVYNDAINVFDGGVRTVGGVKDTAGIFASYPAPHLGLLNGFVDQF VATAVFVFLIAHIVDKRNSYPTWLQPILVGTGFVAIGAAFGYNCGYPVNPARDLAPRL FTAIFYGGAVFTKWFWVPIVGPFVGAVVGIWFYYFLIGFHTPQDAEEKYVVLTGNQEL KPLTSKDATEETA" CDS join(683477..684061,684347..684469,685273..685722) /gene="CBG00919" /locus_tag="CBG_00919" /standard_name="CBG00919" /product="Protein CBG00919" /note="Partially confirmed by transcript evidence" /db_xref="UniProtKB/TrEMBL:A8WPB7" /protein_id="CAP22323.1" /translation="MRLLATLLLLATTTHASVLDAFRANGIEFEVYGEGRLIPEKQNC VPYTLDLNEFINSFNTNNMNEYSRDLLQKRIFTSFDAICRKFHIQVTSKPPVYNLTED RTQMRYLDYFDYNWNSLRFERDLKSLFLEHKINNPFLDTVSQEAIKRAGATDVLDFSQ KTTVFPKMCNVKQMTVDTMICFNISDIPQSGTIYALAHGGEFLHNEEVYAYYDIPHFA LITQQAVIPIELEKCKVLFGTYIYCFEEFDTQCDVRTLSDCPIYAYKTDDDFVFRRNF GIGYIYATTESEVDLYQNGTRQVVPGRVFVLRTNYETPENGVPVIIPEMTPHQESEKS LFAELLPESQKILKSGTPTRLYTTQRRGVNFLSHKHFDQGAWETVRDFFGF" CDS complement(join(685941..686021,686601..686914, 687360..687585)) /gene="Cbr-gst-13" /locus_tag="CBG_00918" /standard_name="CBG00918" /product="Protein CBR-GST-13" /note="C. briggsae CBR-GST-13 protein; contains similarity to Pfam domains PF00043 (Glutathione S-transferase, C-terminal domain) , PF02798 (Glutathione S-transferase, N-terminal domain) contains similarity to Interpro domains IPR004046 (Glutathione S-transferase, C-terminal), IPR004045 (Glutathione S-transferase, N-terminal)" /note="Predicted" /db_xref="GOA:A8WPB8" /db_xref="InterPro:IPR004045" /db_xref="InterPro:IPR004046" /db_xref="InterPro:IPR010987" /db_xref="InterPro:IPR036249" /db_xref="InterPro:IPR036282" /db_xref="UniProtKB/TrEMBL:A8WPB8" /protein_id="CAP22324.1" /translation="MVHYKLTYFLSRGLADVSRQLFHLAGVEFEDERLNRDQFLERKD TFPFKQVPVLTVDGLEIPQSMAIARYLARKFGFSGATPEEQAMVDAFVDQFKDFYSEI HDYFYAKLGINQLDGDEQKTKVLIPARDKFLALLVSFLKKSKSGFLVDSGLTFADLII IDNMTTLINWQPEYADGYPEILAWRDRVMNYPKLKEWIEKRPVTMA" CDS join(688220..688244,688688..688774,688872..689506, 690013..690157,690371..690582) /gene="CBG00917" /locus_tag="CBG_00917" /standard_name="CBG00917" /product="Protein CBG00917" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPB9" /protein_id="CAP22325.1" /translation="MTDYMVGTESQNLRISESQNFIISESQNLRISEPQNLEPQNLRI SESQKLRISESHNLRMPESQNLGISESQNFKISELQNLRISESQNLRISESQNLRISE SQNLRISELQNLRISESQNLRISESQNLRISESQNLRNSESQNLRISESQKLRISESQ NLIISESQNLRISESQKLRISESQNLRISESQNLRISELQNLRISESQNLRISESQYL RISEYQNFRISKSQNLKISESQNLRISESQNVNFQSLKPKNSNFTPRKTYKTQQESNF TPFCPKTKLLPDCATLTPCAGATANLVDKNHPYHRFVVVIMNLVTTRGGLILLLLLAT LATPAKVVVKDVDTIIYDDYTPGESTDWEIRIC" CDS join(697260..697313,697361..697486,697892..698146, 698266..698418,698760..699068,703558..703701) /gene="CBG00915" /locus_tag="CBG_00915" /standard_name="CBG00915" /product="Protein CBG00915" /note="Predicted" /db_xref="GOA:A8WPC0" /db_xref="UniProtKB/TrEMBL:A8WPC0" /protein_id="CAP22326.2" /translation="MGNTASAKQVADQVAYGIIACVTVGVLIVMVYMCIFGQRLKATG VRWHVLNCSVWGILHLISYCSFAEKAPWPNYITNQNWRDTAKQVECLTRSIFPAGMVF VYLEQIILTLAPKLANSIIFNAVFFVLLVPWLNGLMIFLYYAHYMDVVWWYEPADLFN LATYLLFVTFTFIYFLFCLFGTCLCCATMASKKQSSRTTGTFADMWLLFPYGLVPSIM YGPSFGMTSVSFAMQHLLTWVLESGLLSGGGGSSSGDSMIDMNLLMQVATNAILAMPW FVLLFPLVQSVLALVCLRMFREQFFFMVSCGRFFEGKHHKIGMTKDEWNVTSIGPPPL YPISAPSEKQEA" assembly_gap 701989..702281 /estimated_length=293 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(704011..704569,704601..704665)) /gene="CBG00914" /locus_tag="CBG_00914" /standard_name="CBG00914" /product="Protein CBG00914" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPC1" /protein_id="CAP22327.1" /translation="MVFFGNSELQKLRILEFLCFWKISESQNLRILESQNLRISESQN LRILESQNLRISESQDIGISESQNLGISESRNLRISESQNLRISESQNLRILESQNLR ISESQNLRISESQNLRILESQNLRISESQNLRISESQNLGISGYRNLGISESRNLRIS ESQNLIISKSQNLRISKSQNLRISESQNLKMISDEFRLSQNVGPLEI" CDS join(705005..705165,705772..706013,710072..710174, 711108..711342,711759..711996,712814..713066, 713235..713349,713874..713934,713983..714064, 714112..714195,714537..714657) /gene="CBG00912" /locus_tag="CBG_00912" /standard_name="CBG00912" /product="Protein CBG00912" /note="contains similarity to Pfam domains PF00651 (BTB/POZ domain) , PF07707 (BTB And C-terminal Kelch) contains similarity to Interpro domains IPR000210 (BTB/POZ-like), IPR013069 (BTB/POZ), IPR011705 (BTB/Kelch-associated)" /note="Predicted" /db_xref="InterPro:IPR000210" /db_xref="InterPro:IPR011333" /db_xref="InterPro:IPR011705" /db_xref="UniProtKB/TrEMBL:A8WPC2" /protein_id="CAP22328.2" /translation="MPGEEENGDGHVLLEIEQFVENPVGEGADQEDIVEEIEEMMRRM ERMLENGMNREAPDVRRFDPLALAEENHLDVLRIQERIRELERNRWQIVDDLADGGRI LQELEDVAREEEEEEEDVDWVTPLARTYTKPFSTDWFGDDRESLSDLAKFYNSPQFSD VNLKIGEESFPAHRLILSKSSDVFDRMLSQRWNGDRLDLQLTEDPMCQIAFSSFLRFL YCNHVVLHRDNCLPLLVLADKYNVTTLKKVCLDFAQSEILPIIDLKEIFSVWFSYATK AYHPSLIKSCMEVIALDFDALLSEEWEKDWQELHRDQMVEILKCNELQLANEFKLWEA LLKWIQAPSHSERRGNTAGPLMALLLPLIRFPFMTADELSQVEKSNVSELHSKLFQPP LLLAYKFQALPLASRMTVKDFTKKQFLLRKYRDIRWDRRINLSKSLLSQPCRDHAFTF DTRSSTYPNSEWKWTLKLSGLSGLSSNPVKKDVLRVLMIAEGMDQSRSIEYLFQIVNE KNVLFSTSGKKSFTKTRYYSELEMEKKIEFDELLNDESLYSCNREFIFQVLLKPID" CDS complement(join(716619..716779,717401..717514, 717572..717650,717693..718000,718549..719341, 720422..720577,721637..721924,722422..722602, 722861..723085,723293..723422,724202..724618, 725464..725583,726542..726658,727196..727462, 727844..728062,728786..729149,729296..729363, 731594..731726)) /gene="Cbr-let-23" /locus_tag="CBG_00911" /standard_name="CBG00911" /product="Protein CBR-LET-23" /note="C. briggsae CBR-LET-23 protein; contains similarity to Pfam domains PF01030 (Receptor L domain) (2), PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00757 (Furin-like cysteine rich region) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR006212 (Furin-like repeat), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR000494 (EGF receptor, L domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR006211 (Furin-like cysteine-rich domain), IPR008266 (Tyrosine-protein kinase, active site), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WPC3" /db_xref="InterPro:IPR000494" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR006211" /db_xref="InterPro:IPR006212" /db_xref="InterPro:IPR008266" /db_xref="InterPro:IPR009030" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR020635" /db_xref="InterPro:IPR032778" /db_xref="InterPro:IPR036941" /db_xref="UniProtKB/TrEMBL:A8WPC3" /protein_id="CAP22329.2" /translation="MRFLFLFLLFLIFDSSDCKDNNISTSSTSPKVRKRQRPPVVVRE FCSGTTNGISRYGSGNILEDLERMYPGCRRVYGNLEITWIEENEIKKWRKSKNQTVET PEDETSLKSVNFFDHLEEVSNERHRDTRKHRQTFQIRGSLIIYRANIRKISFPKLRVI YGDEVFHDNALYIHKNEKIHEVVMKELRVIRNGSVTIQENPKMCYLADKVDWNELLYD SSRQTVETSKSHEQCYKNGESIVKCHESCNEKCWGTGEGDCQRVYRSVCPKPCSQCFF SNITQSSECCDSSCLGGCTDHGPDSCIACSKFEMDEKCVDACPARKVFNHKLGKLVNN PDGRYQNGNHCVKECPTELLIENDVCVRHCSEGHHYDAFKDVRECEKCRGSNCLKMCT VDNQPLTKEILKGLKGCEQIDGPLIIENGYVFFFCSSEILKYDKSLYVFFFNFFTFPN SRLSHEDLKVLESVKIVSEYITVVRQEFFNMSFLQNLQIIEGRKHQHMRWALAIYQND NLVELNLNSLKLIKTGSVIISDNHRLCYVGTVDWSTIIQSKGENGRPHIKTVGNRDNW MCVQEEEVCDPNCNKRGCWGKRPNDCLECRTWNNMGSCVSKCDTVGFLRNQTSMRCQP CSPECKTCNGIGEFDCLSCRHFTLYNPEFGNRMECVESCPKATYFSTEDDVCEKCHAT CYENGCTGPSSNLGPGGCNKCKYAVKYQNGTVTCLKATGTNSVCFENNLPHFHIHPMD IDGVTDSHCEECHPFCKTCSSFGRNKNGNGCVCKEYEYHVNAVEKICVDVCPTNTFLI ADNTTGYGICKKCHEQCDQNYPCVDALPTGCTLCKSFSVLNEDSRECVAECPDYLPYS NPSNKECLDYDIAGRQKKTRIIIIVCVFMGFAIMFLFIMLIYWRCQKMGHKLKIAEMI EIPELTPIDDNVRPNMNRICLIPSSELQIKHEKKLGSGAFGTVFAGIYYPKRAKNVKI PVAIKIFQVGQSQTDEMTQEATNMFRLRHEHLLKIIGFCIHDDGLKIVTIYRPLGDLH SFLQLHKETLGAREQILYCYQIASGMRYLHEQRVVHRDLAARNVLVKKFNHVEITDFG LSKILKHDADSITVKSGKVAIKWLAIEIFAQHCYTYASDVWAFGVTCWEIITFGQSPY SGMNTDSVHSFLKDGNRLFQPPNCSPDLYQELLRCWMAEPKARPSFDTLYQRFKEFCK VPSLFLENANSISDSDLAADEHFQNEQLREIFDGNIDPQTYFDQASLPSSPTSMATVG FTLPNGDLISRMQSVNSSRYKTEPFDYGGSIPEEDNSYLIPKTKEVQQQSAVVYTAVT MEDGQTEIAPSNGDYVNQPISQPGSSNGYYNQPSIDNNKNPDPVEYENDEQVAQKETC L" assembly_gap 720930..721417 /estimated_length=488 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(737741..737896,741575..741676,742076..742157, 743051..743323,743545..743692,744479..744689, 744912..745145) /gene="Cbr-twk-4" /locus_tag="CBG_00910" /standard_name="CBG00910" /product="Protein CBR-TWK-4" /note="C. briggsae CBR-TWK-4 protein; contains similarity to Pfam domains PF07885 (Ion channel) (2), PF00520 (Ion transport protein) contains similarity to Interpro domains IPR003280 (Two pore domain potassium channel), IPR005821 (Ion transport), IPR013099 (Ion transport 2)" /note="Predicted" /db_xref="GOA:A8WPC4" /db_xref="InterPro:IPR003280" /db_xref="InterPro:IPR013099" /db_xref="UniProtKB/TrEMBL:A8WPC4" /protein_id="CAP22330.2" /translation="MHPRGKFLAGHLSAFYIAPATTAALISRNHNDWAHLQLLRRTPS SDAGTMNQVHFGRTSARRRNAMILENNSGDGDDEDRPKEGEERVGGRSRVFMATPFHP HHKERLFSVSKGFLANLRLALFHLVLIFATVAYIIAGAYLFTKIEHQAELDRYQSYHS IYKNFVQNLIYDSSGNRSVSEVENMIDAFTSINFRAFKDGLKPTDFLVPQETSRWSMI SAIFFTTTVLTSIGYGNLIPISTGGKIFCVGYAIFGIPLTLVTIADLAKFVADMLIMD PTEDPKTGRQLLVLVFLLGYMTISACVYTILEPMWSFLDSFYFCLVSLLTVGFGDLYP SGTVEYMLCSIVFIFIGLILTTLGIFLNLKKIEIDISAVDVSGSVGIAKMHSIGRGFD AMKMLNVLR" CDS join(750486..750510,752492..752914,754354..754424, 758386..758487,760637..760668,761604..761761, 762658..762822,763343..763348,763689..763927, 765068..765538,765622..765639,766238..766432) /gene="Cbr-sym-2" /locus_tag="CBG_00908" /standard_name="CBG00908" /product="Protein CBR-SYM-2" /note="C. briggsae CBR-SYM-2 protein; contains similarity to Pfam domain PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) contains similarity to Interpro domain IPR000504 (RNA recognition motif domain)" /note="Predicted" /db_xref="GOA:A8WPC5" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR035979" /db_xref="UniProtKB/Swiss-Prot:A8WPC5" /protein_id="CAP22331.2" /translation="MNRQTSLPEQRQLLIRVSDSNYDENTKLVVTTFYTSSEDANNNN ATSSYHNISTHFVNITPDDVCKFFDENPTQSIIFAKGAEPIRHVLIPLFVSNERYVPH QIHQYYDIQHLYYKGGVEDENQMEEEDVDVAAEDDVAIARAIMEMSEETQCVSSSGVS SLLIFESLYFGSQIWVQLSKKIRKESFSPPPPPPLACLHGHPSPYIPVALCQPPSMGV KELPLDGMASIFSNYQPRKKIRAKFILSIFRPNFWSVLNKKANGKIRKKPFLCSSAEA MDFVSANAVIVRMRGLPYDCTDTQIRAFFEPLKLTEKILFITRTDGRPTGNCDAFVQF ETEEDAQQGLLKHRQVIGQRYIELFKSTAAEVQQVVKRCNLINSAPVVANAVEVSDEK KKDCVRLRGLPYEATVQHIVNFLGDFANMVKFQGVHMVYNNQGNPSGEAFIQMISEQA AAATASGVHNNFMCVGKKKRYIEVFQSSAEELNLQHLVHQQQQPQAAPQALGFLAHLP PPAPGAQQIWTSYPSPPISPILPGQVTQLIIYGIHLSIGVPELVANFTTPDHTVENSF EVQEVMFTRWPTHLCPGEAILTLRSRAVPTQTAQTSPLSQISQISAYSHHHHPTGLPP NFPLQPILME" assembly_gap 755645..756747 /estimated_length=1103 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 759595..759615 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="unspecified" tRNA complement(768227..768298) /gene="CBG28800" /locus_tag="CBG_28800" /standard_name="CBG28800" /product="RNA transcript CBG28800" /note="C. briggsae predicted tRNA" assembly_gap 771147..771567 /estimated_length=421 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(774005..774192,774429..774665,775115..775217, 776138..776505,777511..777661,777866..778246, 778477..778656) /gene="CBG00907" /locus_tag="CBG_00907" /standard_name="CBG00907" /product="Protein CBG00907" /note="Predicted" /db_xref="GOA:Q626N3" /db_xref="InterPro:IPR026767" /db_xref="UniProtKB/Swiss-Prot:Q626N3" /protein_id="CAP22332.1" /translation="MAGTADCQEHVARPRRPNICRVLRRTGYGKCLICSLLLVLCFFY ATYCHVKHEAYSGSQPLLIYQHGPCAQGYNFVPIVFGLMLYIVYLMECWHSRTKIINM KKVRVEDALDYITALRTSPPIVWWKSVCYHYTRKTRQVTRYRNGDAVSATQVYYERVN SHQAGSMFIYDTCGFRDISKSILEVEKFHVTRIRLTRSFVFANMQAATEFEQQRSRFF NDNETKDDYMEVREGMDLSDVGFVEEILAFNCPTPPWFLHPIVFWFFSILVLSWPLRI YTEWRTAVLSFQVVKLFGTHYLSPNSINYTGPLTRTSTMDTVELEALLRREQHFVVPS YSEVMLMQNTIANSNTNFPNLRFLEPVIQPRPLVNTTNEHIVLRNYGATDTENSEQSS TVIPRPPPLRVSRSMTFAEENNDENLGFLENGNRRNRAIPSRGTVPLRSLSIGGISAW SNGYREIGREDSQFLIEPDEPPPPYEVALRMCAPLYERLRRSISSRLASISHSSSKDL KSLTLKNNNGAANNNNNNNNENPEEQP" CDS join(<783381..783701,783748..783910,784630..785204, 785341..786226,786848..787144,787669..787900, 788207..788537,788612..788917,789877..790325, 791098..791413,791524..791679,791682..791735, 792130..792494,793174..793519,793597..794083, 794573..794826,795244..795735,796317..>796427) /codon_start=1 /gene="CBG00906" /locus_tag="CBG_00906" /standard_name="CBG00906" /product="Protein CBG00906" /note="contains similarity to Interpro domain IPR000169 (Peptidase, cysteine peptidase active site)" /note="Predicted" /db_xref="GOA:A8WPC7" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR041677" /db_xref="InterPro:IPR041679" /db_xref="UniProtKB/TrEMBL:A8WPC7" /protein_id="CAP22333.1" /translation="SRDLNCQKLMGRLNHPFIHLAHNLDLLHVINYAVSTREKSVLSH SKTIITEIFNREFEQKLHKKWLARPFVTGEWNYQATTLVFEIMMLFFNTARFQNGFML TIESYNECWLNFIESYDTTNLGQMARAGVTEREFDNLKILQIHIDKWINAAKTAARDQ PHSRRPDNQDYAPQRFGEPSGTTSRSFGRQPSPDSRRSEYQDSQSRSCGSPESRRQPS PENRRPPVSQNPPPRSRRMTPSPPISEEEFLRRQAIRFQKRREQDPTYGQPLGLHRVG GADSDYGDLDLTTTDDEAPESVGTSEDVKKEEKEDNLPTIDVDAKPRQPYVQQTEMDG EYQPMWMKSEKTEPPEDFRTLTAVPTLKDYVNASEPYLRRIVELGVYTSADHYLDVQF RLLREDLVSPMRDGLDIYRKNGTCKGRRLEGQNMNSDISITNIERVDGKQVTDKDGWE MRIIHPSSFDISKLLENDREMKESGLVMLSCDRFVDDFHLGHVQTSVLAKGQLHLAVH EETAPFQPDKSYMMAEATSYLPAYEHVLNALKTLSPFKPIPFERYLVHGRKEIYRPNF HRFEKSEEQIAEERRLERIYNEKRSRAAAKRLMADKPIPRGLEEDDDYYIMNRKVPPK EEQDLEYLQLQEPIFRPFIAVDSKGSDNILIDQKWYKVSKLLNDFHPTNMDESQRVAF CNTFKHELSLIQGPPGTGKTHIGVQIVKTMLHNRGHWKITSPILVVCFTNSGLDNLLE RIHQMILDDEDLSRDDGKPKMIRYGMKCESDYLKRQKVLRFDVYDQYRGSVADGHISE LNKTGAQKRKKAEQLAIASYTLFTSRRQFLSFNILQRAMKPSYQDEIHAFAIEHVDSN DKSLNADEALACWLLDRDFGKATRTQSNKAKQNRFQNAGAAEDSEDEDKQFMTVEDDD DDEDGELDDEKMLDKIFKKMNLECSGKQVLNMANACNLDEYHTKEPWIIAPDKTPEVV PLMGVRMKNRNDTVDNTICELLHEVKSMIHGTEPLTYHELNDVKYIFSLTRPKRWALY MHWCEEVRKYVCLNLPEQMREYRAACQRFIKANARIDAEIMKMPMIVGCTTTGCSRLR PQLEQVQPRILIVEEAAEVLEAHILSAMISSVEHCVMIGDHKQLQPNPAVHELAEEYG MKISMFERLVERALPYSQLREQHRMNPLISDVIVKPAFYDNVIDADNVFHYPPVEGMA TNLFMWSHKGKEQSPDGISWYNTQEVAMTVSLVRHLLKQSYTHRDIVVLTTYAAQRNF MTREFPGMFVGPQQQYEQGQIPVHTVDSFQGREGKVVIVSLVRSHRGVPENTGIGFLA VPNRICVALTRAQHGMYVIGNAAYSKAGRLWNNLVNSNLDQQSLVAYEIPIKCVTHGN VALVKDPVDFNRLSPEGGCLELCDLQKPCGHICRRRCHPNVDSEHDLRCEYQCERRCP NPEYQHRCMRACYEDCGQCMHMVVVRLACGHQVETPCSRVATATCDQKCNKHVMSCHH KCSNRCGEPCITSAACQELVLLDLECSHKKPMKCAELTAGEPDFSCNQRCENRMLTCQ HQCAELCGQPCTVECQEPVKVTLSCKHQQDVKCCNYDPNRLDLVVCKQIETKMLSPCG HFELIECNKPPSTVECTRPCPETIAECGHICGNLCGTCFTTKNHLCQQRCPVTLDCGH SCMGKCSEPCAPCKSLCKNRCEHQSCGGGVADFGRECSTICALCVQNCSNRCAHRSCT RRCYEECDVKTCNEPCAEKLACGHACLGLCGEVCPKICGTCTRQLYTKAVAGASPQRV HRLIHVPKCSHVHAVEVLDEHVKALKDQGKYLTCCYPGCGGPLNGVHRYAKYHKKIWL EENMKKVRARASSIHHSTYDTRLIEICTATLDQMTQIQPTNLSNDFYRYMGIFRHHIA KFRGTGDTFRGKADQKWRLAFLCDVASCYGAMARLISTSSKFQTYKRKNIPPNVDQML QRMNNTDSPFSRVVDEMRRGLEHVQENFKSGLVGAVLPKLRLLIARMTLFQMLTTMCY ELISDGRDVSDAESRELSKYIQIFVGCEQHH" CDS join(804545..804628,805597..806394,806616..806885) /gene="Cbr-abu-14" /locus_tag="CBG_00905" /standard_name="CBG00905" /product="Protein CBR-ABU-14" /note="C. briggsae CBR-ABU-14 protein; contains similarity to Interpro domain IPR013032 (EGF-like region, conserved site)" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPC8" /protein_id="CAP22334.2" /translation="MAARRAAFVFVALLAISSVFAEEEAPAKNETGLALSRAKRQCCS SSSNSCCGNNNNVQCVPVCLQQCQSSCQTVQCVQQCQPACNQQCGGGNQVILLPQTSS CNQCQQQCISSCATPICAQSCNNQCSNQCGNSAPQIVVLQPQQNQCGSCQSSCQQTCP TCNCQSACAPACGNNNNNQQIIVVQQDNSCSSNCNNQCSSSCSTPICIQSCQSSCQQA CQPTCQPQCMPSCSSSCTSNQAPIVIVAQQGDSCSNSCSNQCQSACPTPICVQQCNSQ CQNQCSNSCSGNSCNQQQLTSSSKPLRYFQVIVLQQQDNCQNQCQSSCMNTCQSSATV LQCQPICQQTCQNTCQQAAQIVVPCQSTSSGCGCSSGYSQCGGSCCRRR" assembly_gap 808933..809129 /estimated_length=197 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 810453..810764 /estimated_length=312 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(811033..811518,811536..812179,812888..813072, 813281..814205,814251..814531,814585..815518, 816056..816158) /gene="Cbr-ergo-1.1" /locus_tag="CBG_00904" /standard_name="CBG00904" /product="Protein CBR-ERGO-1.1" /note="C. briggsae CBR-ERGO-1.1 protein; contains similarity to Pfam domains PF02170 (PAZ domain) , PF02171 (Piwi domain) contains similarity to Interpro domains IPR003165 (Stem cell self-renewal protein Piwi), IPR003100 (Argonaute/Dicer protein, PAZ)" /note="Predicted" /db_xref="GOA:A8WPC9" /db_xref="InterPro:IPR003100" /db_xref="InterPro:IPR003165" /db_xref="InterPro:IPR012337" /db_xref="InterPro:IPR036085" /db_xref="InterPro:IPR036397" /db_xref="UniProtKB/TrEMBL:A8WPC9" /protein_id="CAP22335.2" /translation="MSNYNDDYNRRGGGGDRGGYNRNNYSNRDDYRDNSRGGNDYREG HNDRNNYRGGGGQDNYNRNDRGYDRGYDRGHDRGDRGHQDYGRGDRGHQDYGRGDRGH QDYGRGDRGHQEYGRGDRGHQDYGRGDRGHHGREDYGRGDSGRGGYGRGGYGKVATVK DLQMDRMSLNGGGRGGGNNMYGSQREGRGGYRAPQRCTAGMSNLGELAGGADHPNMPV AKKDLAHNQQKFYERPDTSAYENPRCGQKIELLTNHALVHMPSTPIVLYEYNIDVFKG RKKLEKREEAGPMFREILQTVPKHIFPPATDFIYNDVNLIWSTMKLPSHERKVEGRNR NSFYYKYTRCVELKFELATNCQDSQLISTLVDAIGTARVTWPKQTGNKFSVFKRSIFL LQDRLDEGAFADAPVFVKLRNGVDARIGVSMAIRLNLRVGITACFDVSHTLFTRPGYP LVRLFWELIQGETLEDDQILDGQWDADMQLARPTKRNIELMSNVLKKMTLIFSPEDGI TIDEKGKYHETDLRRLKTRGREFKFYELGPDSSFQFLDEKAGKKITVAEYFLAAHNYR IRYPNLPCLQKKPSKMNPHRLVLFPMELVSLLVDPIRFTGAVTEKLKGDMVKYTTLSA VQRRLVLQNVIAQKAIGDCPQIVDNEDRYMKNHEIKIEKDMLTVKACLLPPPEVVYGN STFLDTEHRGQWEAVINDPIRTVLEDAVYRRNRNPNAPKLKKRLLGSILKIGSPMNST VGFDIDDSCYHNLMRAIHEAGQPVCWQNPELGQAAIQGSMEYLQKRDQPGTIMDWFNS LKENLDDYKQSEDEVIVPLVFVIFEVRFTTLNLQRQDFQNDYNLFKWLADNHVGIFTQ GMLYKTFNGIGSTPATCKYTSQIVEKVLGKVGTTHRRLERNGEHKSWKKIVVEPTLLL GVDVSHPSTRDLMGEDQVKRLSVATVVGNIDLDCTEYRASSKIQDVGEERIVRFENEI LERISEFVQFTGKRPAHIVIYRDGLSEGDFQRTLYEEKNSVNMACRSIAADFNPTLTY IVVTKRHHTRFFLKNEKEGLAEQGYNVRPGTLVEDTVTTKNYYDFFLTTQVGQMGLAR PTHYYVLHNNWKVPGTFWPTVTHALTYLFCRATTTVNLPAPVLYAHLAAKKAKETMDG ALYANALNGKFLDTSSFADLAQLERCIKNHQELDGMTFV" CDS join(819249..819308,819862..819947,820558..820597) /gene="CBG25453" /locus_tag="CBG_25453" /standard_name="CBG25453" /product="Protein CBG25453" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IES3" /protein_id="CAR98403.1" /translation="MNSFLTFFLVFLALFAMPTDRIRGDVDSVFFSPFRIIGKRAQVL SPAYDDLGEYLVNPDFV" assembly_gap 822463..822576 /estimated_length=114 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(824993..825044,825353..825610,825957..826084, 826399..826664,827442..827608,827674..827977, 829456..830080) /gene="CBG00902" /locus_tag="CBG_00902" /standard_name="CBG00902" /product="Protein CBG00902" /note="contains similarity to Interpro domain IPR003016 (2-oxo acid dehydrogenase, lipoyl-binding site)" /note="Predicted" /db_xref="GOA:A8WPD0" /db_xref="InterPro:IPR001611" /db_xref="InterPro:IPR032675" /db_xref="UniProtKB/TrEMBL:A8WPD0" /protein_id="CAP22336.2" /translation="MDESYLPHSFSAGGPVDVASQFSETTVRIVSNTWNLKNFKYCEF SPKPKNIFSGICAVSGEVISEPNLDEHNCEVLKNRKLEDLALNDLSNEQRFFLTEKID EYTDPYFAIIKFLDAIIDPKADHLLTNLLINGFQVKFQRFWIVQLSFRFQFLQKLHIP HCRIKSLDFDILCTSFPKLRDLDLSYSGLRNLTGISNLENLEKLILRGLDVKRKHHIQ DLWELERLEFLDISGYEKIGRNVKLYLLSRKARISKRMDNLKILDCSFNLMNKRDLKK LLSIHGGLETISVIGTDIHQLPDSKLPYTTQKVQILRTTSLKKCTEALIHYTKHQNMS GLFLGKLVKYMQVQLVDNYEAISRKDLENAFLAMVKYMGSTTDEICFRVLYTVEPMTR QNRSKIFSREIKKEFMEILVSKYSQMCHDEFSTGKSKPRSYKLMTWKIFNHIEMITNC SLPQISQICDLTILEIKKMDQKNIEMSFGAFEFFNKFYGFIPVEQAEKFKNDRDLKFA IFGILGHHETISDVFEMQCLLKTLEILTGNLKMDAEIFLKFLTSFQFALHRFRKHPKI CAMLLTSFKGILERFEKENAGKKLKKEDLEILG" CDS join(830692..830757,830812..830916,830965..831339, 832026..832294,832343..832382) /gene="CBG00901" /locus_tag="CBG_00901" /standard_name="CBG00901" /product="Protein CBG00901" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPD1" /protein_id="CAP22337.1" /translation="MVAEKTQKLGHQLFFGFLLISGGFLKNRRTVRWSRKCKNSAMNV FFQIFCDFLLVSRTTLVHQERLQKIAERNDRPFLVSVFYSNKNEKTDSEKLGAKNQFV KFIMEIISKIENADELCGKKIFEKIRENSDSEDVKSWTNWILENFKNSGNSGELEVTF MIGSREVSGLARSENSENSENDKFMVIMGTIGTMGTMSTMGTLGAMGTMVIMGSTGAM GTMGISLIGESWDHGDNGYYRSYGYHGYYEYYGYYGYYRSLGYYGYYGFYGYYGKMGN FRSKNRLF" CDS complement(join(832522..832745,833716..833855, 833961..834193,834280..834408)) /gene="CBG00899" /locus_tag="CBG_00899" /standard_name="CBG00899" /product="Protein CBG00899" /note="contains similarity to Pfam domain PF04161 Arv1-like family contains similarity to Interpro domain IPR007290 (Arv1 protein)" /note="Predicted" /db_xref="GOA:A8WPD2" /db_xref="InterPro:IPR007290" /db_xref="UniProtKB/TrEMBL:A8WPD2" /protein_id="CAP22338.1" /translation="MWRTRYRGSPVREKEEFACINCQQPATNLYIKYSEEVTTLTDCD KCDKTVDKYIEQDVVLVVIDLMLQYVQAYRHLLLNVRIQRPERLFVMFWLSHAAEVWI RERENREEQTTMLADQEWMFYRCLLLSAVEISSFVFVILLFWKLKKDETVHTWRQMIS LTMLGYYGNVAVVLSFIFRLSHRLSYQIVMQIFLLVSHIQVQRVLFPTVSDSNNIIVV LVAKTFSTITGALFTQAVNDSFM" CDS join(832880..832964,833045..833567,833621..833675) /gene="CBG00900" /locus_tag="CBG_00900" /standard_name="CBG00900" /product="Protein CBG00900" /note="Predicted" /db_xref="UniProtKB/TrEMBL:G2J6B7" /protein_id="CAP22339.1" /translation="MGIMGSMGTMSTMGSMGSMGTMDTMDTMGFYGFYGYYGLYGYYG YFGYYGYFGYYGYYKDYGYHRDHGFYGFYGQCGYYRYYGYYVFYGYYGYYGYHGYYGY YGYHGYYGYFGYYGYYGYYGYYGYYGYCGFYGYYGSLSGYYEYYGFYGFYGYYGFYGY YGYYGYYKDYGYYGYYSNYFRKNGQFSIEKSTFLQFVVKFNVCIFSLKIVEFRPKMAQ NI" CDS complement(join(836950..837261,838084..839149, 841548..841570)) /gene="CBG00898" /locus_tag="CBG_00898" /standard_name="CBG00898" /product="Protein CBG00898" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPD4" /protein_id="CAP22340.1" /translation="MAPRRAKKISESQNLRISESQNPRISESQNLRISESQNLRISES QNLRISESQNLRISESQNLRISESQNLRISETQNLRISESQNLRISETQNLRISESQN LRISESQNLRISESLESQNLRISESQNLRISESQNLRISESQNLRISETQNLRISETQ NLRISESQNLRISESQNLRISESQNLRISESQNLRISESQNLRISESQNLRISESQNL RISESQNLRISESQNLRISESQNLRISESQNLRISESQNLRISESQNLRISESQNLRI SESQNLRISESQNLRISESQNLRISESQNLRISESQNLRISESQNLRISESQNLRISE SQNLRISESQNLRISESQNLRIPESQNLRKLRISECQRLRISESQNLRISESQNLRIA ESQNLRVSESQNLGISESQKRGISESQNLRISEAQNLRISESQNLRVSEAQNLRISES QNLGSSECQTLRISES" assembly_gap 837391..838047 /estimated_length=657 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(842573..842698,842971..843285,843866..843997, 844051..844164,844321..844554,845660..846102, 846299..846412,846751..846931,848306..848328, 850575..850662) /gene="CBG00897" /locus_tag="CBG_00897" /standard_name="CBG00897" /product="Protein CBG00897" /note="Predicted" /db_xref="GOA:A8WPD5" /db_xref="InterPro:IPR006553" /db_xref="InterPro:IPR032675" /db_xref="UniProtKB/TrEMBL:A8WPD5" /protein_id="CAP22341.2" /translation="MVKSLLNLCLSAVCQHELNQELSFIPVECRQKLLEFFCSHDQLS ASDCSNLVCSKYFGCNIPSLTFYLSAELTDDMLGQLTTNNKYVEKITLVDCPNVTDLG TLAVTRGQLLLRQLELRAMHQLTDECLENVYSPYLYSVDLSGCGKITSTGIRNLIMNN KNIRCLYLNTCRSLDDQVLYDIAEHVGERLHVLELDFPTSLADPAAALHYLSSKCPNL SQLSLARFFHESLEDVENNVQFVIDGVNLRDLDLYGNFFQLMPQLPPTVQSIRLSVSG EEDSEQLLATLMDQPFLSCINLIVSVREANIQAVDNANRLLCTIIPLLGPKIIKLQIS VPRLFDEPLRLVTESLPNLTHLSLEINHLNTNILQKYFAGGSKSNASKLKCLKICRMR MTYRVLFAIARGARNLTDLETSHMPSVDDRFLCLLGGNCRQLRCLNINGCRLATDKGL SVLARDADNETRCVSSSLEETQTVETLCAHILAPRRPRKLVFGRCPLREVRIRGTACT DKSIYTLAQFCPELEWISYADYSGRPKFSDAALQCLRDCVFRRSFFQNFWNSQRISAP ILFTFWYTPTGWRSFFIGVDFTL" tRNA 853171..853252 /gene="CBG28666" /locus_tag="CBG_28666" /standard_name="CBG28666" /product="RNA transcript CBG28666" /note="C. briggsae predicted tRNA" CDS join(861069..861211,862538..862990,863693..864224) /gene="Cbr-ref-1" /locus_tag="CBG_00896" /standard_name="CBG00896" /product="Protein CBR-REF-1" /note="C. briggsae CBR-REF-1 protein; contains similarity to Pfam domain PF00010 Helix-loop-helix DNA-binding domain contains similarity to Interpro domain IPR011598 (Helix-loop-helix DNA-binding)" /note="Predicted" /db_xref="GOA:A8WPD6" /db_xref="InterPro:IPR011598" /db_xref="InterPro:IPR036638" /db_xref="UniProtKB/TrEMBL:A8WPD6" /protein_id="CAP22342.2" /translation="MVLLNSPPPPSMFNRKTTQEKKRRDEINAKIKELQELIQSHTDQ EKLTQSEVLNRAVELVNRMETESPGPSTNPNRKGFFDGFATIENLTYTFIKSLGMNSE VCQDFIQKARHRFDRERSGLLMSTVGNRKRKSEERHLPTTSSDSQVSSPSTSESGMCI DRKEVKKNREQDRRDRQGEAFDALKNFIIDNKLMSSHQVEKMQRLNTLDIIINYIRNK KNNFVSRNGQDQSLYTHAIAEGQKTARHVAFQFFKSDRHLIVRCADLEKFLEFSLAPK PPILGFPRLPFPSFPPINPFLAFPPFLGIPPKLGTPETSRTSPSYSLDSPPPSSDTST SSIEPTTPNENNSGVVTSSRQSSGALMPPPSKRAKVFRPWE" CDS complement(join(864986..865291,866168..866509, 866561..866824,866982..867193,869092..869239)) /gene="CBG00895" /locus_tag="CBG_00895" /standard_name="CBG00895" /product="Protein CBG00895" /note="contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR000980 (SH2 motif), IPR008266 (Tyrosine-protein kinase, active site), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WPD7" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR000980" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR008266" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR020635" /db_xref="InterPro:IPR036860" /db_xref="UniProtKB/TrEMBL:A8WPD7" /protein_id="CAP22343.2" /translation="MSKEKVPEEDLNLPYFHGALMNQDADQLLVNDGDFMVTMKLQID INKLVVRLKKGIRRYEIKRLPGSAKLGSRSKETIDKLINSLKTDVLEIKGEKIVLKRA IAKGKFQLMHKDVIFKKKIGAGAYGTVYRGRLVKTNEVIAVKKLDPESADEDGLAEMM KEARVMQLYDHPNIVKFHGFILDDLPYLLVLEFCNGGSVEDRLRDKGSRLTVPTRVHY TYMAACGMDYLHKKGCIHRDIASRNCLIHRGIVKMADFGMCRATTVYKMDMSKPCNVR WLAPEVWDNGETRFNTDVYAFGIMMWEFFEIPYATPYAEMKAGQVKRKTRTGYRLPPP AAMPKEVGDIMKECCQPAADKRPNAEKLKEMLEEVYKKQNPTETTHNSSLAAPVSTEP TAKSNIASKIDNGALKKKAEKEKKKSRDSKG" CDS join(877250..877418,877508..877624,877985..878084, 878330..>878492) /gene="CBG00894" /locus_tag="CBG_00894" /standard_name="CBG00894" /product="Protein CBG00894" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPD8" /protein_id="CAP22344.1" /translation="MRSVYHLIRISIFLDSIFCLAPMPHIDWCLYWRYLNKDQFRPEC NGVYRLRFAKHKAHDHRPQSVPWTPARPVPRFQSYVATNAIIPAVTNENGFGECRPHH TNCQQSGQCSSGQLCIDNNGYCCGSTRIITECPAPSSLVAHCSFRRRHVNWCASDAEC APHLAPRQNLFFNNDAIMMDSIQ" CDS join(882280..882336,884100..884318,884911..885012, 885061..885159) /gene="CBG00892" /locus_tag="CBG_00892" /standard_name="CBG00892" /product="Protein CBG00892" /note="Predicted" /db_xref="GOA:A8WPD9" /db_xref="InterPro:IPR002184" /db_xref="UniProtKB/TrEMBL:A8WPD9" /protein_id="CAP22345.1" /translation="MSVSSTINGTFLAGASCTLGHHIVTPWIAKSDCDYLVDTGKLRG MQILGIIGISGPSVFMQGIIFERLIALARAKFYENSMFLVGPIIAFVSCIATGALVIY LFIDETFTEPTFSYVLIPSTSGPKMNYLCWGLLSANLIDLVANLAMEKINTCIRKR" CDS join(887114..887194,887247..887458,888199..888358) /gene="CBG00891" /locus_tag="CBG_00891" /standard_name="CBG00891" /product="Protein CBG00891" /note="contains similarity to Pfam domains PF00085 (Thioredoxin) , PF02630 (SCO1/SenC) , PF08534 (Redoxin) , PF00578 (AhpC/TSA family) contains similarity to Interpro domains IPR013740 (Redoxin), IPR003782 (Copper chaperone SCO1/SenC), IPR000866 (Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant), IPR013766 (Thioredoxin domain)" /note="Predicted" /db_xref="GOA:A8WPE0" /db_xref="InterPro:IPR012336" /db_xref="InterPro:IPR013766" /db_xref="InterPro:IPR036249" /db_xref="UniProtKB/TrEMBL:A8WPE0" /protein_id="CAP22346.1" /translation="MSELFAGVQLFNQEGETVDGAEYLKGKVVGLYFSASWCPPCRQF TPKLKRFYEEIKKKHPEFEVVFVSRDREDEDLREYFNEHMGAWAAIPFGNEKIQELLA KYEVKTIPAMRIVKPNGDVVVQDARTEIQEKGKEDPEALWEEWLAFYD" CDS complement(join(889107..889334,889785..889902, 889952..890082,890936..891100,892103..892160, 892424..892482)) /gene="Cbr-cdc-25.4" /locus_tag="CBG_00890" /standard_name="CBG00890" /product="Protein CBR-CDC-25.4" /note="C. briggsae CBR-CDC-25.4 protein; contains similarity to Pfam domain PF00581 Rhodanese-like domain contains similarity to Interpro domains IPR001763 (Rhodanese-like), IPR000751 (M-phase inducer phosphatase)" /note="Predicted" /db_xref="GOA:A8WPE1" /db_xref="InterPro:IPR000751" /db_xref="InterPro:IPR001763" /db_xref="InterPro:IPR036873" /db_xref="UniProtKB/TrEMBL:A8WPE1" /protein_id="CAP22347.1" /translation="MTLEVNDVCILKSDNLRDNRQSKLSQESKEEAYVRTPVIRYSIP AVDSPQRESSTFRSVSASILASILRDRSRCLQLIIFDCRYPFEYFGGHIKGAINIYSL DELETYLFDELGVKSTMVGLLPIFYCEYSQVRGPAMARRLRKIDTHRNNHRALDFPEI YLLDKGYVNFWTELGNRDLCDPRYYVSMHARPYKHALRQYTQHHRSKSSANGHKKNQM RVFSANSFWKRIKRYKRRRRRRREHDWIFEKKKS" CDS complement(join(893385..893495,894409..894468, 894938..895955,897172..897401)) /gene="CBG00889" /locus_tag="CBG_00889" /standard_name="CBG00889" /product="Protein CBG00889" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPE2" /protein_id="CAP22348.2" /translation="MPTSSSSGAEDVVMDSEEFRQEGEEEGRVEDVDDSEVYFPDDVV DEEVVVAAEDTVEDTVEEEDQDTVDPAQMEKIKRIQHQKMQLVTPMAQKRLRGRPPVP RGDTDDFQDDDDDEEMLMLDDKDPQNPGDVNVEEGPDGPPPAPPHLVNKQNSRGRPAN PIPPHRRPLPKDLVPPGVLKRGATGERGGAKRRALLEEAPPLLHPPRGGPMPSAVPED VPKEDTIIKTEEGVLPAPEAVEEVTVSPSEDVAAQKKGGLDLPAEHFPKNAAGHVATR GIHPIAAEKLTTMFEILEEEDVGEVIVGRGDDSEAQQRVLTLQGGSFIEDRIGRADLM EDEETRMMQKTSAGTTSSEGATASYITVQEEDGRNVVYHVADGENAEEYVLEEGPQMK EELMDEEDDDDLPPELIPEGVADDAENYEMIQDGEYQEIEEDSRTVRYLTEEEIREAQ ARGEILEFEEEVFEEEVDEYQQ" assembly_gap 893925..893934 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 894683..894864 /estimated_length=182 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(899213..899619,900239..900283, 900523..900680,901125..901242,901356..901728)) /gene="CBG00888" /locus_tag="CBG_00888" /standard_name="CBG00888" /product="Protein CBG00888" /note="contains similarity to Pfam domain PF09429 WW domain binding protein 11 contains similarity to Interpro domain IPR019007 (WW domain binding protein 11)" /note="Predicted" /db_xref="GOA:A8WPE3" /db_xref="InterPro:IPR019007" /db_xref="UniProtKB/TrEMBL:A8WPE3" /protein_id="CAP22349.1" /translation="MPSISKTKSGERYRAPTDQARKQERKKENKRNKKDRQQIRQAMA KFCNLDETTSKLLALERQILGLDPQPFHIDVLRKKQKVLQDSINKRRLTLQQGKEEGE LKKFNDKMTAYQNDCAKLAILAHQERLAREADPDMIPLPMGEASMMPAGPGHAPYMAP PPVKRKVEFQLPPRAARASQKPPGPPCGLAPTFSDSEDDNDDGEDQYDDGDLAPVPIP EFDTPYAPPMHRNYGGPPSSYHNQHMPPPQRMPNYHPHSHYNPMGFQQHSHHPHHQES AIISSAPQINNRKDGAPATLSAAPELRNLRRETVKLVPAQLLRRPGDNRSSTVVQHQV PIVTKKRPEAQKQAKNTDEAYNDFMKELDGLI" CDS join(902894..902913,903882..904106,907340..907521, 910793..910912,912022..912153,915189..915264, 919338..919407,919627..919764,922251..922330, 922412..922789,923645..923863,925648..925816, 925882..926517,927376..927498) /gene="Cbr-daf-19" /locus_tag="CBG_00885" /standard_name="CBG00885" /product="Protein CBR-DAF-19" /note="C. briggsae CBR-DAF-19 protein; contains similarity to Pfam domain PF02257 RFX DNA-binding domain contains similarity to Interpro domain IPR003150 (DNA-binding RFX)" /note="Predicted" /db_xref="GOA:B0K060" /db_xref="InterPro:IPR003150" /db_xref="InterPro:IPR036388" /db_xref="InterPro:IPR036390" /db_xref="InterPro:IPR039779" /db_xref="UniProtKB/TrEMBL:B0K060" /protein_id="CAP22350.4" /translation="MTEEKKIAPTQSSKKRKGLDIDALWRKKLKDVENHQSPDDQKTL ESEGTSSKGFTPSKKDPEDVKKELGSPSELEKEKDEKVTTPSPPPKEDTPPVSRSTRS SRKKTEAEKKKMELDDVKPNLKLLKKGLPFTCHNLDDQSEEPESKRFSHPKTENSAIF KKKKFHIFSISRILLFKILEKMEFPKQMTVLNSEENCRLFQEYTLNQIMRHNIVYSDE EEEEDDESEMEVIHQNVDGGDSRDGQYQYSGYNHAVTPNGQNYQLYGADTSYSQYYPY TNNLQQSPQDTSGAYLVPNAAQSPVSIEDQDTQLLPNNQRASPATIGWLFENYEIAEG SSLPRCQLYDHYRKHCEEHRMDPVNAASFGKLIRSVFQNLKTRRLGTRGNSKYHYYGI KMKDNSPLHLAPNTIHPECFVPPLQQMGVQRNGGNLGGGGGGDVYVDTINQVAAVKYV DMNGGHRKRSKRGHSSTSSSDDRDSASPALGVPTHQTIVNRTNELGVSIPPQQIGFQP NATPAVPYIFTDQDRKGMGKAQMPNVQFTDKAGLLSTISFRKLGLNEGHITKLIEEYD RMCYDVLAMVKSLEFSKIEEMWSSFWSGGCGIKHDVLTMVDVLIPNVLLSELSAGMTQ SCRTFGKNIDVYLRKALISGNLNETFIKKKIQAIKYMQQGLKRYTSLNHLAHAARGVL QKDELCQQMYQDYIKVDIMAVHQQAGWICNCDSVMVQHVNNAFKENLQKMKPMSVWAE WLESIVDQVLAKYHDKPSNMVSNVGKQFLLNWSFYTSMIIRELTLRSATSFGSFTLIR LLADDYMYHLIATKIARASNQPLITVTRQDKDWPLAKEAKEYIVPPADDHDDDLNVN" CDS join(930385..930441,931477..931716,932216..932337, 932487..932581,933327..933496,934090..934398) /gene="CBG00884" /locus_tag="CBG_00884" /standard_name="CBG00884" /product="Protein CBG00884" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPE4" /protein_id="CAP22351.2" /translation="MKIQILLLLCYFSVTFSSRPLELEFVCNSYQECSEEKTQLVQIC NQQNRQKWDQKCVQKMKNDFDGISKYEELIKMETRSCIDLDLKEMNISFIGNKDKNRF CASYLFNLPDTNGDCALRIARAQNRCDALRRCCEPAVRCEQQTMYSENGRTLSGLQEE VEIKMAECAQHEELRPHPEPQPSKVDKSIKKQRKIKIIESPPFSLCLKYLQCQKDAHQ MRVNCSKASNPHTLDGLDSDDISDSTWQNCKKSLEEDYYLMNQRRQEAFAYLDKCVPI ANVTREFMITDRICRASTLKDRKPRKEAINCHFEVSRKRKECALLRDCCVQADV" CDS complement(join(935587..935717,936199..936535, 937639..938161,938988..939303,939490..939601, 939711..939917)) /gene="CBG00883" /locus_tag="CBG_00883" /standard_name="CBG00883" /product="Protein CBG00883" /note="contains similarity to Pfam domain PF00501 AMP-binding enzyme contains similarity to Interpro domains IPR020845 (AMP-binding, conserved site), IPR000873 (AMP-dependent synthetase/ligase)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WPE5" /db_xref="InterPro:IPR000873" /db_xref="InterPro:IPR020845" /db_xref="InterPro:IPR025110" /db_xref="InterPro:IPR042099" /db_xref="UniProtKB/TrEMBL:A8WPE5" /protein_id="CAP22352.1" /translation="MIFHGEKLEHHDTPVHDFLMDRFERHEKNDPNCLAFTTAENEQD SISYKNLKKKIIQISEWFLENGYKKGDVVLLAAHNNWRCFAFCMGAWRAGLVVSAASS QFTAYEMNYQIEDSHSQLILADAQTLPVVLEASKNLKFVKNVVSIAPNSPKPVIEFEV LTSRLIRNLKMPKIDPMNDLVLLPYSSGTTGKPKGVMITHLNVSMMMVSCIQFHDAIA KSYGLPPDFIFPHELHFLPLYHVMGLFRALLTSYRGSNQILFTKFDMELMLKSVEKYS IAILAAVPAIIVRMVNFPLLKNYDLSSLGTISVGSAPLPDGALQKLKKLIPDLRIVQG YGMTEFSFATHMQSPDCADGSVGRPVPGTSMKVKKEDGTLCGPHEVGELWIKGPQMMK GYWKKEAATQELKDEDGFMRTGDIVYFNENGDTFICDRIKELIKVNAKQVAPAELESV ILEHDDVADVCVFGVDDKDSGERPVACVVSKQGKRDLETMKAIMRHINQKLARYKHIK EIEFVGEILRTGTGKILRRTMKKAFLDAKKSRL" CDS complement(join(941148..941227,941496..941722, 942388..942483,942877..943186,944878..945058, 945291..945538,945915..946157,947138..947403, 947907..948024,948108..948258,948871..949002)) /gene="Cbr-mtrr-1" /locus_tag="CBG_00882" /standard_name="CBG00882" /product="Protein CBR-MTRR-1" /note="C. briggsae CBR-MTRR-1 protein; contains similarity to Pfam domains PF00175 (Oxidoreductase NAD-binding domain) , PF00258 (Flavodoxin) , PF00667 (FAD binding domain) contains similarity to Interpro domains IPR001094 (Flavodoxin), IPR008254 (Flavodoxin/nitric oxide synthase), IPR001433 (Oxidoreductase FAD/NAD(P)-binding), IPR003097 (FAD-binding, type 1), IPR001709 (Flavoprotein pyridine nucleotide cytochrome reductase)" /note="Predicted" /db_xref="GOA:A8WPE6" /db_xref="InterPro:IPR001094" /db_xref="InterPro:IPR001433" /db_xref="InterPro:IPR001709" /db_xref="InterPro:IPR003097" /db_xref="InterPro:IPR008254" /db_xref="InterPro:IPR017927" /db_xref="InterPro:IPR017938" /db_xref="InterPro:IPR023173" /db_xref="InterPro:IPR029039" /db_xref="InterPro:IPR039261" /db_xref="UniProtKB/TrEMBL:A8WPE6" /protein_id="CAP22353.1" /translation="MGDFLIAYGSQTGQAETIAKSVKEKSELIGLAPRLFTLDENEKK FNLNEEKLCVIIVSSTGDGDAPDNAARFVRRINRRTLPEDFLKSLEFVVLGLGDSNYS SYQLIPRKIDKQLANLGAKRLFEYGEADDQVGLELVVEPWIDRLFKTLGAKFEIAAER MNAITESPNIKLNQVKSEEEKKALLEKRLHDEESDDEGKGGVQGVEMLIPQHFDYPEI SLLKGSATLSADENLRVPIAPQPFIVSSVSHKKLPVALKLEWQNACKMPGVVTKPFEV LVVAAGFVTDPFSKKIKTKRMITVDFGDHAPSLQYEPGDAIYFCVPNPAAEVNFILKR CGVLSIADQQCELSIDPKTEKINAQIPGHVHKTTTLRHMFTTCLDIRRSPGRPLIRVL AESTTDPSEKRRLLELCSAQGMKDFTDFVRTPGVSLADMLFAFPNVKPPVDRLIELLP RLIPRPYSMSSYENRRARLIYSEMEFSATDGRRHPRKGLATDWLNSLKIGDTVEVLGK EPARFRLPPLGMPKNSAGALSLLMIGPGTGVSVFLSFLHFLRKLKIDSPADFKEDVPR ILFFGCRDATVDSIYMNELEQFLAEGILSDLIVCESEQKGERVQDGLRKHLEKVRPFL EPSENAKIFICGDAKGMSKDVWQCFADIVAGDREIADLDAKKKLMDLKKTDQYIEDVW G" assembly_gap 943637..944028 /estimated_length=392 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(<957931..958019,958165..958248,959465..959591, 960267..960555,960814..960863,961648..962772, 963226..963876,964531..964604,970660..970819, 971024..>971221) /codon_start=1 /gene="CBG00879" /locus_tag="CBG_00879" /standard_name="CBG00879" /product="Protein CBG00879" /note="contains similarity to Pfam domain PF00498 FHA domain contains similarity to Interpro domain IPR000253 (Forkhead-associated (FHA) domain)" /note="Predicted" /db_xref="GOA:A8WPE7" /db_xref="InterPro:IPR000253" /db_xref="InterPro:IPR008984" /db_xref="InterPro:IPR011011" /db_xref="InterPro:IPR013083" /db_xref="UniProtKB/TrEMBL:A8WPE7" /protein_id="CAP22354.1" /translation="QLFLRRLARNTGPPRTEPPTDDELLKAIVSLQNKRTNFGRSLSN DVIFFRGESEDEKEDVNISRHHAHIDVTYSNLAKNLIYRIEDHSENGTYINDRRLCKE ERHILEIGQVVKFGHRNSLSHPAGAEIAHPEADFAFIVDMADEDTVLGRKVLNIKDRK VKVLSKESIVRDLGVRDHSEPLPAATQVMEADSTNNVNGSTSNGSLTDSEQMPCTSSS SSSSIILLNAPAKAPHESRFDDPKNLSRHRLTRVSKQFADKLMEQYARLLVQIPALEA HKDAVTELLSVHCCVYTQFLTRDQKLELLRKQCADDAETKELAEFCEPMAEFLAAEDE QEKTVELNDLVEQLAADGSPKKDTMPWVHSETSAFRSTATPPTSGIWKPRARNPLNSE QHYINHLRSLNVAHEKVEPLADAAARNGQLQAFSPTSFSFYHAVQLATFSNYAYGKCH YQHYLTPVRRAVDVVPIAGAGGGHGHIGVIAHAPGRERIDIDEERHSASSGSTTDNNF SRRRTDSEESEIDVVGTEDDDAPQVPQIAAESPEDVVAPAAPENAPESPDAEDAEEEE MEEMEGEETESTPTPSPDDVVKEPEIDLRQSTTPRMEAQSTPSAVVSTGPTPLSSPIP KKTSEDVTPPSESTLKENAEKAADTVEEVVKENVKKIKAIAATMTPSSGAPTSSGATP STSDASASKKKKTSTSSPKERRMKQLDDASSAESDSEDDGGKKKAKTSRRSTRKATSP RKPRKDDEDVANDETSKKETPKTRRKPAARRTDGEGTTSSRRKRAVDDDGSEQEPQPR KQQRRGRKSKIKFSKILQKKNGDDSDDADKEKNPLVAEKSKINFTKILQKKNGDDSDD ADKEKCGVAKLSHCLCVKLERRKDLQWVSCSDCSQWFHVYCLRLNNQSYTEEDVFSCC GPNASPEAVASLAGEVAAQYRELKHTTKIEAYDEA" CDS complement(join(972405..972704,972758..973023, 973748..973852,974285..974405,974458..974924, 975134..975143)) /gene="CBG25455" /locus_tag="CBG_25455" /standard_name="CBG25455" /product="Protein CBG25455" /note="contains similarity to Pfam domain PF02135 TAZ zinc finger contains similarity to Interpro domain IPR000197 (Zinc finger, TAZ-type)" /note="Predicted" /db_xref="GOA:B6IES4" /db_xref="InterPro:IPR000197" /db_xref="InterPro:IPR035898" /db_xref="InterPro:IPR036529" /db_xref="UniProtKB/TrEMBL:B6IES4" /protein_id="CAR98404.1" /translation="MPIGPRMVDPVAQPPPETTTVPPNLCCGFLRFLFCGENSAKVQP IEEASERSQESQNEDSNPPEAPEAAPESTGVLPKLFTAIKEKVIGTSHPAHSEKTHPT RIIPINETTPEPRHEFDDWHLGEARAPEIQITAENAKEHQEKLLKILHGYDCRQKYMA RLQLILQGHLICEPCCSRSHCPDMQKSLIQLIRCRAYCEDAEHFNMLTLIKHWRECTN GDCLVCGPCKNRQGEPAPTSADAPEDPSTPPLVEPLFVDFNGNPFLPMPDIHPLPHWR NFVPDRLREHLQSSIHVAVKEKAMMIEENAFLASATRGEYYARLALEIYEYNLPESEK FHAAPDSWQSQTPLATRHQQIMKLFIVINQDPFPTEPGAHWINMPLDTAIKYEKFWFE KSSSQKVYFKEMRNRAGHHHSQNRVMPLFL" CDS complement(join(976992..977294,977595..977674, 977728..977854,978525..978674)) /gene="CBG25456" /locus_tag="CBG_25456" /standard_name="CBG25456" /product="Protein CBG25456" /note="contains similarity to Pfam domain PF02135 TAZ zinc finger contains similarity to Interpro domain IPR000197 (Zinc finger, TAZ-type)" /note="Predicted" /db_xref="GOA:B6IES5" /db_xref="InterPro:IPR000197" /db_xref="InterPro:IPR035898" /db_xref="InterPro:IPR036529" /db_xref="UniProtKB/TrEMBL:B6IES5" /protein_id="CAR98405.1" /translation="MTRTTYEDPWVPKTTSSVFCCVKVSDGSLEPAYDPKPEDDSVFT VDLDKMDIKSMVSTSVPSCYFTCTNEACLEMKRLLKHQKKCRKGDKCLVQDCTVLRAK AKHFQKCVTLNCQGCGPIDASLRILLGKNRFQLQLWNPMIPNETRNSYVIRIFNALRL PNSVENEQRLGQLLCFARNAERQHFLCCDTEEKYFKAINKQAQRISKDIEMLLELKKK F" assembly_gap 977378..977387 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(984203..984267,984314..984371,985337..985405, 985460..985548,986635..986869) /gene="CBG00875" /locus_tag="CBG_00875" /standard_name="CBG00875" /product="Protein CBG00875" /note="contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR018957 (Zinc finger, C3HC4 RING-type)" /note="Predicted" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR013083" /db_xref="UniProtKB/TrEMBL:A8WPE8" /protein_id="CAP22355.2" /translation="MGNCLPSLFGFSRQHDETPMRRSRSSENAMSFTNPAMMQTSSSY VNQLYQHNVIRQRQAEERGKEIDEAKKNRIRGLLDQIPADVFRGDMASTECAICMIDF EPGERIRFLPCMHSFHQECVDEWLLKSFTCPSCLEPVDSTILSSLTAHNMQSLHQITS SSPSTSSGAKH" CDS join(995140..995222,996019..996209,997608..997699, 999147..999271,1000877..1000973,1001917..1002054, 1002559..1002783,1003077..1003454) /gene="CBG00873" /locus_tag="CBG_00873" /standard_name="CBG00873" /product="Protein CBG00873" /note="contains similarity to Interpro domains IPR017900 (4Fe-4S ferredoxin, iron-sulphur binding, conserved site), IPR004489 (Succinate dehydrogenase/fumarate reductase iron-sulphur protein)" /note="Predicted" /db_xref="GOA:A8WPE9" /db_xref="InterPro:IPR004489" /db_xref="InterPro:IPR009051" /db_xref="InterPro:IPR017900" /db_xref="InterPro:IPR040282" /db_xref="UniProtKB/TrEMBL:A8WPE9" /protein_id="CAP22356.2" /translation="MTQNVLILPIIAILSLTVNADSGAARSRCWTSGNGRPAQWWSEG AEITRGKFFYECRRGQLEPLGCLSNVEQKVRIGSTFQQDGYEFTCQLGSDGYIEFGYS ACVGQDGRTYQKGETWTDAKNTYYYRCRDDGRVVKTTIEGCIAHDKQRRVPLGETDDF NGYTYKCQQKTSGVVQMCSVGCIHNGQKYTIGQQYKDGDYVFYCKLQGGKCTKQCIGC VDANGQNIYDGQRYKRDETTYQCEDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQ AYRWVIDSRDDYAQERLHRMHDSFSAFKCHTIMNCTKTCPKIRPGKRSHRAVGCNIVE NGRDINKVIGCRWYEQNPDWKIEKTCETDGPNKTKVTTVGCIYKYKGFDRIFLEPGKY TIWNLPKQKDASVGLACRKTSDGAELLIFDVAQLERSTAGLSYDLPRGKK" assembly_gap 1002797..1002806 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1003910..1003999,1004232..1004456, 1004684..1004812,1005644..1005877,1006422..1006522, 1006849..1006918)) /gene="Cbr-sdhb-1" /locus_tag="CBG_00872" /standard_name="CBG00872" /product="Protein CBR-SDHB-1" /note="C. briggsae CBR-SDHB-1 protein; contains similarity to Interpro domains IPR017900 (4Fe-4S ferredoxin, iron-sulphur binding, conserved site), IPR004489 (Succinate dehydrogenase/fumarate reductase iron-sulphur protein), IPR006058 (2Fe-2S ferredoxin, iron-sulphur binding site)" /note="Predicted" /db_xref="GOA:A8WPF0" /db_xref="InterPro:IPR001041" /db_xref="InterPro:IPR004489" /db_xref="InterPro:IPR006058" /db_xref="InterPro:IPR009051" /db_xref="InterPro:IPR012675" /db_xref="InterPro:IPR017896" /db_xref="InterPro:IPR017900" /db_xref="InterPro:IPR025192" /db_xref="InterPro:IPR036010" /db_xref="UniProtKB/Swiss-Prot:A8WPF0" /protein_id="CAP22357.2" /translation="MLARSALFVHSAELAANAARAASGAAAAQPKKTGNRIKTFEIYR FNPEAPGAKPTIQKFDVDLDQCGTMILDALIKIKNEVDPTLTFRRSCREGICGSCAMN IGGENTLACICKIDADTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQKKTP LTLGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVI DSRDDYAQERLHRMHDSFSAFKCHTIMNCTKTCPKHLNPAKAIGEIKSLLTGFKSKPA AEPSAF" CDS join(1007169..1007294,1007346..1007474,1007529..1007655, 1008127..1008445,1008929..1009080,1010092..1010213) /gene="CBG00871" /locus_tag="CBG_00871" /standard_name="CBG00871" /product="Protein CBG00871" /note="contains similarity to Pfam domain PF09777 Osteopetrosis-associated transmembrane protein 1 precursor contains similarity to Interpro domain IPR019172 (Osteopetrosis-associated transmembrane protein 1 precursor)" /note="Predicted" /db_xref="GOA:A8WPF1" /db_xref="InterPro:IPR019172" /db_xref="UniProtKB/TrEMBL:A8WPF1" /protein_id="CAP22358.2" /translation="MLRHFLIPSFLILSSFSTPELDSAPFTDDPWDLDGPCQKYVEKF AYYQAEMVACATNWSIPPKVCTNCYQNYINFKTYEFETKNLNNVFSLDNRTCSQVIYD NYLLSYSSDISTALTSKIWEKSRCDSCVTITWSLHDNKSAPTFTDRTIQFQQRLYEWR NCVVNYTSGDVLDPKMVPNDPILTPEDLKNSSKICNECKSEFDELYKFYWKIYTTPDV DFCVDVETTMNDTIHLDDVWQCAERQDRNRDLFGIMVTFATLMLLTALFYAASYIQGG GQQRNLVRYSRLSDPRGQRSRLLSSGMSDADLVHRFVSSTVPPIHQMR" CDS join(1019210..1019290,1035608..1035808,1037319..1037676, 1038205..1038401,1038794..1039017,1040699..1041034, 1041911..1042112,1043175..1043311,1044554..1044817, 1045417..1045719,1046937..1047153,1048556..1048738, 1049792..1050022,1052310..1052501,1053506..1053619, 1053763..1053939,1054603..1054689) /gene="Cbr-mel-11" /locus_tag="CBG_00870" /standard_name="CBG00870" /product="Protein CBR-MEL-11" /note="C. briggsae CBR-MEL-11 protein; contains similarity to Pfam domains PF12796 (Ankyrin repeats (3 copies)) (2), PF00023 (Ankyrin repeat) (4)contains similarity to Interpro domains IPR002110 (Ankyrin repeat), IPR000484 (Photosynthetic reaction centre, L/M), IPR020683 (Ankyrin repeat-containing domain)" /note="Predicted" /db_xref="GOA:A8WPF2" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR020683" /db_xref="InterPro:IPR031775" /db_xref="InterPro:IPR036770" /db_xref="UniProtKB/TrEMBL:A8WPF2" /protein_id="CAP22359.2" /translation="MGQDDEDDAQMLQAKQQITFNVVNKRKDQLRRWQSSEMNAEPAR RMKRPKVQFQDSDIFLSACMSGDEEEVEELLLKGADINTCTVDGLTALHQSVIDSKPE MVRFLCEKGADVNAQDNEGWTPLHAAACCGNVSIVRYLCQHGADLSVVNSDKELALDL AVDEQCREYLEDDYKRQMIDLEACREQELATMLKDVKMWISQGEYRDVPHHRTGGTAM HVAAGRGYTQLLELLIKAGGNVRAQDKEGWTPLHAASHWAERDACKILLENGAELSDL TFTGIDVLGVADKECIDYLVELADTVKSQAKRKSPGGGSGSMVPPASVLQEKNQRISH EEHVLSTERKRDLQHKDQYSENEYLHHSSIGSTASSSSTTTSSQNLTNSTSSATTIRI GDNDRESRESTANSEGVEVEEEEEDEEVEDVEAEDEMEADEEEAAEDEQSEDVKKIET SPVRSETGSRSLSMTRSLDGYTDRSSSARESSVETASEAATSSGSGTTASSRFTPSST PSSQRSASVHSQETPRSSLVGFSMVEATSSIGSGDQTVSATVPIAPLSAPPKAVHQSP SSWINRGVPLSSRSSTSSVSRASSTPVSDIISPPASLHSPHSLLHQNPSSSASTTVTP TPSTVPSTPTNSNVMAATISSSAKNTPSPAGSVTITATFTKPSSSRNPSEELYRSPSQ PTNVPWASLWHNVNNASTGQIRTHIEQLRNASSSSLSSYYPRVSAFRPIASSRTPSQS SVGASSPATIAEYPRGFVPQQINPNKMSRWQSKTVTESEAERRNNSRMQRQHRRSTQG VTKEQLEEASRFATDEVARRNSQVLSSQPTTPTSGGASYSNTLLQPPSARLASEEKDL SSYSDDQHAGDVTTSATVSLMNTNSPSSNNNNSLTNSANVRRKSQGLSISRSNRRATG PVNAEDLAPTMGLRLATAQVPYSARSTAAGTLPTMSTTSRLSTSSSEKASSLPPGGGG QTNGITQSTTQSLSSRSAVVAGLSPAPSMRTPIGPLSNTTATSTSSRYMPSSSLSSNG SSANNQPIYGLQSRPTETNLNYKALFEKERTECERLRREMDDMRRSQTIEPWRGSSST QSPAWRTRGASPSATTIQNLSVAKSTSLASFDENERRSMERKIADLELQLKTTQNLRM ENQRLKEENGALVRVISKMTI" assembly_gap 1019664..1020006 /estimated_length=343 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1021157..1032254 /estimated_length=11098 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1039802..1040355 /estimated_length=554 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1047766..1048024 /estimated_length=259 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1059213..1059880 /estimated_length=668 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1061315..1062577 /estimated_length=1263 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1063782..1064028 /estimated_length=247 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(1064084..1064494) /gene="CBG00867" /locus_tag="CBG_00867" /standard_name="CBG00867" /product="Protein CBG00867" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPF3" /protein_id="CAP22360.1" /translation="MKIFELWSRTFEFRLRRATQDPGPRTQDKGPRTQDPGPRTQDPG PRTQDSGPRTQDPGPRTQDPGPRTQDPGPRTQDPGPRTQDPGPRTQDPGPRTQDPGPR TQDPGPRTQDPGPRTQDPGPRTQDPGPRTQDPGF" assembly_gap 1065857..1066544 /estimated_length=688 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(1068000..1068053,1070165..1070979,1071013..1071507, 1071525..1071899,1071917..1072382) /gene="CBG00866" /locus_tag="CBG_00866" /standard_name="CBG00866" /product="Protein CBG00866" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPF4" /protein_id="CAP22361.1" /translation="MTILGLLRAEIQPIEVWEKKFLSESQNLRISEPQNLRISESQNL RISESQNLRISESQNLIISESQNLSTSESQNLRISESQLLRFSESQNLRISESQLLRF SDSQNFRISASQILRFSEFQNLIISESPNLRISESHNLRISESQNLRISESQNLRISE SQNLSFSDSQILRISESQNLRISVSQNLRISESQNLRTSESQNLRISESHNLRISESQ LLRFSDSQNLRISESPNLSISESQNLRISESQNLRISESQNLRISESQNLRISASQIL RFSESQNLRISESQISEPQNLRISESQNLIISESQLLRFSDSQNFRISESPNLSISES QLLRFSDSQNFRISESQNLSISESHNLRISESQNLRISESQNLRISESQNLSFSDSQI LRISESQNLRISVSQNLIISESQNLRTSESQNLRISESHNLRISASQILRFSEFQNLR ISESHFSDSQYLRISESQNLRISEPQNLRISESQNLSFSDSQILRISESHNLRISESQ NLRISESQNLRISESQNLRISESQNLIISESQNLRTSESQNLRISESHNLRISASQIL RFSEXQNLRISESHISDSQYLRISESQNLRISEPQNLRISESQNLSFSDSQILRISES HNLRISESQNLRISESQNLRISESQNLRISESQNLIISESQNLRTSESQNLRISESQN LRISASQILRFSEFQNLRISESQYLRISESQNLRISESQNLRISESQNLRIS" CDS complement(1069757..1069798) /gene="CBG25457" /locus_tag="CBG_25457" /standard_name="CBG25457" /product="Protein CBG25457" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IES6" /protein_id="CAR98406.1" /translation="MCISNKLRKFQIP" assembly_gap 1072844..1074223 /estimated_length=1380 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS 1074278..1074952 /gene="CBG00865" /locus_tag="CBG_00865" /standard_name="CBG00865" /product="Protein CBG00865" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPF5" /protein_id="CAP22362.1" /translation="MLQNFIISESQNLRTSESENLRISESQNLRISASQILRFSEFQN LRISESQYLRISESQNLRISESQNLRISESQLLRFSDSQNLIISESPNLRISESQNLR ISESQNLRISESQNLRISESQNFIISESQNLRTSESQNLRISESQNLSFSDSQILRIS ESQNLRISESQNLRISESQNLKISKSQNLRISESQILRFSEFQNFRISEFRDFKTSGF RYFKTS" CDS join(1076854..1076993,1078806..1079056,1079133..1079278, 1080029..1080169) /gene="Cbr-phg-1" /locus_tag="CBG_00864" /standard_name="CBG00864" /product="Protein CBR-PHG-1" /note="C. briggsae CBR-PHG-1 protein; contains similarity to Pfam domain PF02351 GDNF/GAS1 domain contains similarity to Interpro domain IPR016017 (GDNF/GAS1)" /note="Predicted" /db_xref="GOA:A8WPF6" /db_xref="InterPro:IPR016017" /db_xref="UniProtKB/TrEMBL:A8WPF6" /protein_id="CAP22363.1" /translation="MRRLTIVPLLAVLCYAQDASEACTKALTDCENDLECQNRLAPLM AACSTGTCQPQCRSAVLNVYQNKLGRVLLRSDATCIPGRDELRTCNFLPAESTVHCSL GKLACEGDLQCNSKFGVFMSECEADAARGVCSEKCKTLLNQTIETSVGAIFSNCTCTA RDDQLCTNLKDNLLGVCLKNTPGVTLSPSDNSITDAPGNDLADSSSSSFKILTAVCVY IFTVLYL" CDS join(1082731..1082769,1082816..1082917,1083111..1083215, 1084177..1084576,1084712..1084869,1085613..1085795, 1086004..1086096,1086918..1087037) /gene="CBG00863" /locus_tag="CBG_00863" /standard_name="CBG00863" /product="Protein CBG00863" /note="contains similarity to Pfam domain PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family contains similarity to Interpro domains IPR003199 (Choloylglycine hydrolase), IPR016699 (Acid ceramidase-like)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:E3CTV6" /db_xref="InterPro:IPR016699" /db_xref="InterPro:IPR029130" /db_xref="InterPro:IPR029132" /db_xref="UniProtKB/TrEMBL:E3CTV6" /protein_id="CBX33082.1" /translation="MKPIVVCLLVLATLLPTTFQRKVENPDFPANCLVGGPDIYDPTQ AEKVPWFDVNLDLPPRQRFKQIAVAYKKDIRAVFDVLNYFFTIIPGVNAWELLGNITA KAMDKGMIMNPYKDEVLGIAEVLEVPIGNLVFLNIFYEMSRFCTSIVAQTEDNKDLYH ARNLDFGQLFVWDIAAQSWGLTDALKKVSVNINFFKNGQLLFKGSTLAGHVGVLTAMK PHHFSLSMNAKVQPDLFNVARWYMGAYANTDLQFVMYFERWLFENCMDFQCAREKIAE VKLLTGAYFILGGVNPGEGSVLVRNTTSVQFERKLFDGDNDWFVLQTNYDPDKDPLFI DNRRDPGNACMKKLGRSNVSMKGIYTVLSSKPTLNKTTVHTVIMSVTKGYFETFIQKC PNPCWAF" CDS complement(join(1087191..1087395,1088164..1088711)) /gene="CBG00862" /locus_tag="CBG_00862" /standard_name="CBG00862" /product="Protein CBG00862" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPF8" /protein_id="CAP22365.2" /translation="MRNENRWMYLPKSAQAKAPVKTPLPDDTTPIPTPQIPQIPQKAQ APLPLAQAPPPPPPPHLGSYYDLPPNITAPPKLKPSPLKNQDMGGNSPIIPLDPTDVS SEVTKKDALAPPTSSVPTSSGVSSGTLTSSGTTPTTYTTPPETTPSGNSDSSFTTPLT TSSNARHREKASNRMFNTVRMIFSNRRSRTGSWLFDSTGSNRFDSSGPPSGPSAKTNS TVSSSILKTDSSYYKTASVEQFPHGAFTFQSN" CDS join(1099261..1099302,1099715..1099812,1100149..1100245, 1101380..1101556,1102960..1103020,1106279..1106377, 1109446..1109741,1110125..1110262) /gene="Cbr-pax-3" /locus_tag="CBG_00861" /standard_name="CBG00861" /product="Protein CBR-PAX-3" /note="C. briggsae CBR-PAX-3 protein; contains similarity to Pfam domains PF00046 (Homeobox domain) , PF00292 ('Paired box' domain) , PF05920 (Homeobox KN domain) contains similarity to Interpro domains IPR001523 (Paired box protein, N-terminal), IPR008422 (Homeobox KN domain), IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:A8WPF9" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR001523" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR036388" /db_xref="UniProtKB/TrEMBL:A8WPF9" /protein_id="CAP22366.3" /translation="MTTDSITFNHILGQGRVNQLGGVFINGRPLPIHVRHAIIAMAKK GVKPCHISRQLKVSHGAVSKILNRYAETGSISPGQIGGSPRARLTVHAVEKEIIIAHE ENPHLSAAELRDVLVQKDVCTKGNAPTVPAIKRLIGKKMERKRLSYSIDSILGISIGG SFFHREPFYYGGPFYFSKPLSEGSSIREAFDDDCSKSSSDDEDTNDTSSASSSSARRN RTSFSAEQLDVLETSFRASTYPDAQAKEHIAKETGLSEEKIMTWFSNRRARCRKNMPI YHQYNTAHGFNGPQTYPALLPSPMMFLPGYGTSPQLNPLFFQNILQTSPSSTQSSPPS S" assembly_gap 1110342..1110926 /estimated_length=585 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(1114174..1114242,1116046..1116171,1116784..1116969) /gene="CBG00860" /locus_tag="CBG_00860" /standard_name="CBG00860" /product="Protein CBG00860" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPG0" /protein_id="CAP22367.2" /translation="MRSTCLLIFLALLVVSSSAMPFYTSLIDDNGEDVRIRQFPQQDV LENMVNELMRVQSVDQMNNNQLEYAFYRHGVQRLMSLCVQLSSSPLCMPSGERFLFAR VAQSVAAPHPQSSPSQVQLLEGHL" assembly_gap 1120591..1121590 /estimated_length=1000 /gap_type="between scaffolds" CDS join(1123764..1123839,1124399..1124619,1124915..1125136, 1198161..1198246,1198668..1198795,1198886..1199055, 1204943..1205029) /gene="Cbr-sfxn-1.2" /locus_tag="CBG_00848" /standard_name="CBG00848" /product="Protein CBR-SFXN-1.2" /note="C. briggsae CBR-SFXN-1.2 protein; contains similarity to Interpro domain IPR004686 (Tricarboxylate/iron carrier)" /note="Predicted" /db_xref="GOA:A8WPG1" /db_xref="InterPro:IPR004686" /db_xref="UniProtKB/TrEMBL:A8WPG1" /protein_id="CAP22368.1" /translation="MNDLVINLKTKPDISKPQWDQRTYYGRVRHFFTLTNPLTLFSSE TRQEKCREIVTNYRKGIISDQLTVNELWRAKALYDATYHPDSGEKMFFLGRMSAQMPG NMLINGMLLSLYRTFPGVVFSHWINQSFNAVVNYTNRSGNVKTSNERLLLSYLCATGG AMSAALALNAMVKNNHGLAARLVPFAAIALANAINIPMMRSNEITDGMELKDENDNLV GRSRKMAVLSIAQVTMSRIAMAMPYMVMTPIIMNRITRTAYYRTRLWMQKYSEIPIQT VLAGIGLYFTTPLCCALFPQKSAIEVTKLEPASQNEIFSRADAPEVVFYNKGL" CDS join(<1128734..1128849,1129143..1129385,1130133..1130365, 1130424..1130576,1131528..1131625,1131674..1131799, 1131848..1131986,1132824..1132948,1133001..1133648, 1134565..1134865,1135090..1135176,1135765..1135979, 1218229..1218509,1218560..>1218665) /codon_start=1 /gene="Cbr-gcy-1" /locus_tag="CBG_00847" /standard_name="CBG00847" /product="Protein CBR-GCY-1" /note="C. briggsae CBR-GCY-1 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00211 (Adenylate and Guanylate cyclase catalytic domain) , PF01094 (Receptor family ligand binding region) contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR006118 (Recombinase, conserved site), IPR000719 (Protein kinase, catalytic domain), IPR001054 (Adenylyl cyclase class-3/4/guanylyl cyclase), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR001828 (Extracellular ligand-binding receptor), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WPG2" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001054" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR001828" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR028082" /db_xref="InterPro:IPR029787" /db_xref="UniProtKB/TrEMBL:A8WPG2" /protein_id="CAP22369.1" /translation="AAAETNQTGSVGWSVCGGAVPLAIERLRQFGFVENFDFEYIVEY TECDLGSVVRAGMKFIKEDKVDVIIGPPCAQALRTMSILASNSRKPVLGYGFVSDSDL SDVIRFPYLTTVLPNSQMLGFAVAKVLQQYHWSRVAMLYYQSDIQYCSSVMTDVESTL SDPEADFDVNIVIKAEIYLNDNQTTDIVLQSVKSRARIILWCSQTAFEKRDYLLKMSG HDMISDEYVHIMLSMRNIAFGVQSSLGKSVFSQSGLTPIWESFSEGTDGFESIAKQAA QRMLVLDVNSEVTDKAYLHYMQNNIIRAVREAPMNCSTMACMSANNTVMGAYARHLFD VVYLYGVALTHTNSTDPEVYSNVDVIVPQFITSFQGMTGEVKISTNLTRMSIFQLYGL NEHYDQVAYINFTFLNEKMNVSLFYKDEGPTVWHFYSNHRPLDIPICGFLGKSCPVSF FQQYQLLIIVALVVIILMLITLIIGCCFIMSSRRAEQLRINSEWQIPFLSLMEPENRK NAHHTSKRSLQSAQTGESKTTAVSDFCENYTIMIYEKDMVLTMKYQYMNLTKSDMEKF VKLRKLEHENLNKFIGLSIDGSQFISVTKLCSRGSLQDILSRGNFSMDYFFMFCIIKD VAEGLNYLHKSFLRLHGNLRSATCLVNDSWQVKLAEFGIENLVENEIPPKKRLLWVAP EVLRGSLTVSQMDPSADVYSFAIVASEILTKKEAWDFLDRKEDSEEIVYMVKKGGVFP IRPELITDIPDVNPDLTERLKAGQTVEPEGFDSVTVFFSDVVKFTQLSQKCSPFQVVN LLNDLYSNFDTIIEEHGVYKVESIGDGYLCSLQYSRQVAERLKAGQTVEPEGFDSVTV FFSDVVKFTQLSQKCSPFQVVNLLNDLYSNFDTIIEEHGVYKVESIGDGYLCVSGLPT RNGYAHIKQIVDMSLQFMEYCRKFKIPHLPREQVELRIGVNSG" CDS complement(join(1136862..1136924,1137580..1137819)) /gene="CBG00857" /locus_tag="CBG_00857" /standard_name="CBG00857" /product="Protein CBG00857" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPG3" /protein_id="CAP22370.1" /translation="MVFLLLLIFISTVLSSQELYAPPILVGGSYVLSTNYEGAKNSST GIKRLLNSETEDTWQVFHFCTKDGQNKDKCGAWVDKNGKKIAGANNNVKEVEDVYL" CDS complement(join(1139026..1139403,1139453..1139485)) /gene="CBG00856" /locus_tag="CBG_00856" /standard_name="CBG00856" /product="Protein CBG00856" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPG4" /protein_id="CAP22371.2" /translation="MLENVEDIKILRGGLTYTDEEVDFQIQEVDSASRVNVIQPPAPL QNLSFKTAQALPRTSSKTTTSSSESDDVEPPMRTAKEETENHPKTAISGEIPEKMNTA ISEKSTKTMRLSATVTNTTAGNSAETISLKTGRD" assembly_gap 1139574..1140573 /estimated_length=1000 /gap_type="between scaffolds" assembly_gap 1141809..1142319 /estimated_length=511 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1153489..1154441 /estimated_length=953 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(1154699..1154818,1154865..1154958,1155001..1155063, 1155114..1155238) /gene="CBG00855" /locus_tag="CBG_00855" /standard_name="CBG00855" /product="Protein CBG00855" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPG5" /protein_id="CAP22372.1" /translation="MNVSFCLQKNRENNRKTKVKSKKPKFRKTLEEALLLYFQKGARK YQFSCMSTAHSGKMQLRMRKEKSSGIVDGSVKFADFEKKNVQSITCVRVTSKQQSTSS SAHRHRLRQKWSKREAPMPFQPVRQQRKRII" CDS complement(join(1156074..1156184,1156259..1156357, 1157862..1158049,1158446..1158542,1158594..1158758)) /gene="Cbr-clpp-1" /locus_tag="CBG_00853" /standard_name="CBG00853" /product="Protein CBR-CLPP-1" /note="C. briggsae CBR-CLPP-1 protein; contains similarity to Pfam domain PF00574 Clp protease contains similarity to Interpro domains IPR001907 (Peptidase S14, ClpP), IPR018215 (Peptidase S14, ClpP, active site), IPR023562 (Peptidase S14/S49)" /note="Predicted" /db_xref="GOA:A8WPG6" /db_xref="InterPro:IPR001907" /db_xref="InterPro:IPR018215" /db_xref="InterPro:IPR023562" /db_xref="InterPro:IPR029045" /db_xref="InterPro:IPR033135" /db_xref="UniProtKB/Swiss-Prot:A8WPG6" /protein_id="CAP22373.2" /translation="MLRRILTTSSVRNLTSSTQARVGIPFVIDNEGKGERTYDIYSRL LRDRIVCLMTPVDDFMASALIAQLLFLQSESSKKPIHMYINSPGGSVTAGLAIYDTMQ MISAPVATWVIGQASSMGSLLLAAGEKGMRSALPNARIMVHQPSGGAQGTCSDIVIRA EEITRLKKRLNEIYVHHTGISYDEIERTLDRDRFMSAQEALKFGLVDKIEKHTGSMPT D" CDS join(1156544..1156609,1156659..1156733,1156774..1156869, 1156935..1157029,1157407..1157536) /gene="Cbr-mdt-22" /locus_tag="CBG_00854" /standard_name="CBG00854" /product="Protein CBR-MDT-22" /note="C. briggsae CBR-MDT-22 protein; contains similarity to Pfam domain PF06179 Surfeit locus protein 5 subunit 22 of Mediator complex contains similarity to Interpro domain IPR009332 (Mediator complex, subunit Med22)" /note="Predicted" /db_xref="GOA:Q626S1" /db_xref="InterPro:IPR009332" /db_xref="InterPro:IPR038427" /db_xref="UniProtKB/Swiss-Prot:Q626S1" /protein_id="CAP22374.1" /translation="MSGNAQKKAASRSMATKKLIIDEFKRRLRDNIKSLNDNFYHIIQ AAKVNPDDNAFKNQTGKMTEFYTIKNEMAVRAQLMVRASDELLRLTTDLKEFLILHDF HFLTHNIKQAESQCEDTLRQQSHLHQALDTDVSNMLFALEEEIADNFFLGH" tRNA complement(1158134..1158205) /gene="CBG28452" /locus_tag="CBG_28452" /standard_name="CBG28452" /product="RNA transcript CBG28452" /note="C. briggsae predicted tRNA" CDS complement(join(1159161..1159214,1160396..1160470, 1160795..1160935,1161051..1161146)) /gene="Cbr-vha-9" /locus_tag="CBG_00852" /standard_name="CBG00852" /product="Protein CBR-VHA-9" /note="C. briggsae CBR-VHA-9 protein; contains similarity to Pfam domain PF01990 ATP synthase (F/14-kDa) subunit contains similarity to Interpro domains IPR005772 (ATPase, V1 complex, subunit F, eukaryotic), IPR008218 (ATPase, V1/A1 complex, subunit F)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WPG8" /db_xref="InterPro:IPR005772" /db_xref="InterPro:IPR008218" /db_xref="InterPro:IPR036906" /db_xref="UniProtKB/TrEMBL:A8WPG8" /protein_id="CAP22375.1" /translation="MASAVKGKILAVIGDEDTVVGFLLGGVGELNKARKPNYLIVDKQ TTIQEIEDAFKGFCARDDVAIILINQHIAEMIRYAVDQHTQSIPAVLEIPSKEAPYDP SKDSILNRARGLFNPEDFR" CDS complement(join(1162081..1162499,1162564..1162667, 1163027..1163097,1163143..1163335,1164176..1164494, 1164712..1165039,1166179..1166835,1168042..1168166, 1168208..1168346,1168392..1168517,1168566..1168660, 1168727..1168879,1170540..1170772,1170823..1171065, 1171818..1172020)) /gene="Cbr-gcy-4" /locus_tag="CBG_00851" /standard_name="CBG00851" /product="Protein CBR-GCY-4" /note="C. briggsae CBR-GCY-4 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00211 (Adenylate and Guanylate cyclase catalytic domain) , PF01094 (Receptor family ligand binding region) contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR018297 (Adenylyl cyclase class-3/4/guanylyl cyclase, conserved site), IPR001054 (Adenylyl cyclase class-3/4/guanylyl cyclase), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR001828 (Extracellular ligand-binding receptor), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WPG9" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001054" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR001828" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR018297" /db_xref="InterPro:IPR028082" /db_xref="InterPro:IPR029787" /db_xref="UniProtKB/Swiss-Prot:A8WPG9" /protein_id="CAP22376.2" /translation="MTQLLRFLLILSIFCDFSHSQRPTIRVGIAAALKTQNGSIGWAY AGGAVPLALQYLKSHGFVKDFDFEFHVEYTECDLTETVRAGLDFMKTKNYDVIIGPPC ATPLIAMGTLSTVYKKPVLGWGFVSESEFSDMERFPYLTSVLPSSMTLGTVTSALLEL YGWDRIALVYFKNELNYCSGVIEDVETSLYDENYSQMVQVVIKEEVDQNNTENFVATL QMIKARARIIIFCAQTGAEKRFYMIQAGKQGMNTSEYVHVMLSMRSVGFGVQSAVGKK PLNSGLAPIWEAFQVAPDGLEDLAKSVASKMLVIDLSSDIRDKEFLQYMTKNIVYAIR EPPLSCMAPECLAANATGMGAYARHLFDVFYMYGMALTNLNSTDPNIYGNVDLLVSKF TTPFEGMTGQVQLNSELSRLPLYQVYALNKEYDQISIMNISLINGTAKVSLAYQNESS DVWHFWGSTRPLDTPICGFLGKSCPIPFFDQYRLLIFVFVIVAGLLILAIFTCLTSMV RNQRAEQSRLNSEWQIHAIKLRIPEKKGRRLSTDSENSTVTKSSKGSSSKNFETSEFN ENYEIQFLENDLVLTTAHQVQELSNLDKMRLVKLRKLDHENLNKFIGLSIDGSRYLAV WKMCTRGSIQDIMSRGNFSMDYFFMFCMIRDIAEGLNFLHKSFLRLHGNLRSATCLVN DSWQVKLAEFGLEFLQDDEERPTQKRLLWAAPEVLRGSLTVSQMDPSADVYSFAIVAS EILTKKEAWDLHKRKEGYEGKRGNSKIEIIYNVKKGGPHPFRPTLLTDSDVNKSLLAL VKDCWSENPEARPNTENICKIILDMTPRTKDNLMDHVFSMLEEYTQTLEVEVDERTKE LVLEKKKSDILLGRMLPKQVAERLKAGQAVEPESFDLVTVFFSDLVKFTELANKCSPF QVVNLLNEVFSNFDAIIEKHDVYKVESIGDGFLCVSGLPNRNGVEHIRQIVEMALGFL EFCDKFRIPHLPRERVELRVGVNSGSCVAGVVGLSMPRYCLFGDTVNTASRMESNGKA SLIHMSEIAHAFLVDHFPYQYETNSRGEVIIKGKGVMETFWLLGRISMSNRSTPPVAQ LKQLPQKCSSFTDTGTIRSVSPYIENASDSEDEELRRVMRREMMRVS" tRNA complement(1162736..1162807) /gene="CBG28459" /locus_tag="CBG_28459" /standard_name="CBG28459" /product="RNA transcript CBG28459" /note="C. briggsae predicted tRNA" assembly_gap 1171162..1171194 /estimated_length=33 /gap_type="within scaffold" /linkage_evidence="unspecified" tRNA complement(1172312..1172383) /gene="CBG28943" /locus_tag="CBG_28943" /standard_name="CBG28943" /product="RNA transcript CBG28943" /note="C. briggsae predicted tRNA" CDS complement(join(1172635..1173038,1173089..1173192, 1173243..1173506,1174119..1174262,1174306..1174480, 1174524..1174824,1175849..1176687,1176746..1177010, 1177860..1177954,1178002..1178154,1178372..1178524, 1178572..1178634,1178816..1178850,1179036..1179052, 1179425..1179435,1179516..1179745,1180565..1180807, 1181757..1181887,1181999..1182100)) /gene="Cbr-gcy-5" /locus_tag="CBG_00850" /standard_name="CBG00850" /product="Protein CBR-GCY-5" /note="C. briggsae CBR-GCY-5 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00211 (Adenylate and Guanylate cyclase catalytic domain) , PF01094 (Receptor family ligand binding region) (2)contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR018297 (Adenylyl cyclase class-3/4/guanylyl cyclase, conserved site), IPR001054 (Adenylyl cyclase class-3/4/guanylyl cyclase), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR001828 (Extracellular ligand-binding receptor), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WPH0" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001054" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR001828" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR018297" /db_xref="InterPro:IPR028082" /db_xref="InterPro:IPR029787" /db_xref="UniProtKB/TrEMBL:A8WPH0" /protein_id="CAP22377.2" /translation="MCLANLCIIFGLIFLFHLGNSQFQISNVTTPKITIRVGIAAAQT TQSGSIGWSSCGGAVPIAVQYLQQKGMLKDFDFEYIMEYTECDKASAVKAGLKFMKDL KVDVVIGPPCAKALEVMGTLSVIYQKLVLAWGFVSESQLADTSRFPYVTSVQPTAQTL GQATAKVLELYKWDRIALLYYSDEQNYCQSVVDDVEATLNDPDSFPVNIVWKGQLEYT NAAATRYTLNAVKSRARISSYTLRLSAKYSENKTNQGFTSDKYKNHILSTIFSKVTAF RIILFCAIAGPEKRDYLIKIGQENMISNDYVHVLLTMRSIGYGVQSAVGKKTLILFCA ISGPEKRDYLIKIAQENMTTNEYVHVLLTMRSIGYGVQTSVGKKTFKNGLTPLWESFS ANPDGNESMAKKAAEKMLVIDINSDVQDAEFLQYFTKNAADAVRSPPMNCNSSACVNA SSASMGSYARHLFDVFYLYGQAVDKLNTTDPNIYNDLDYLVPQLMTSFDGMTGRVQIS KTLYRVPFYQLYGLDADYEQIPLINMTFFNASSVIVLFFDPFFSIAHLKYFQTMSLGY SDENKSVWHFWGNQRPLDTPICGFSGRNCPIKFWDQYGVLIFVAGIVILFLVLIIIIC AGWIVRNRKLEQERQNSEWQIPSIKLQIPEKRKTENSKRSINSGPSTVTGDSKMTGEG LYGFHENYTVLIYEKDLVLTTRHHGISLNSMEKEKYAKLRKLDHDNLNKFIGLSIDGP LWISVWKMCSRGSLQDIISRGNFSMDGFFMFCIIRDIAEGLNFLHKSFLRLHGNLRSA TCLVNDSWQVKLAEFGMDDLLEEHTPTKRRLLWAAPEVLRGSLTVSQMDPSADVYSFA IVASEILTKREAWDFANRKEGADEILYMIKKGGARAVRPELIPDAEVSPSLCTLVKDC WSEVPEDRPKSEQICKLLFEMTPKANTNLMDHVFNMLEEYTTTLEVDIEERTKELTLE KKKADILLSRMLPKQVAERLKAGQTVEPEGFDSVTVFFSDVVKFTQLSQKCSPFQVVN LLNDLYSNFDTIIEEHGVYKVESIGDGYLCVSGLPTRNGYAHIKQIVDMSLQFMEYCR KFKIPHLPREQVELRIGVNSGPCVAGVVGLSMPRYCLFGDTVNTASRMESNGKPSQIH MSEAAHSLLTSHYPHQYETSSRGEVIIKGKGVMETFWVHGKSQDMASMSTRTTPPVTD ENWPPHFKDEQSKRAKTPYPERISSASHKNNDTLKVKY" CDS complement(join(1182829..1183277,1185253..1185356, 1185407..1185670,1186075..1186218,1186373..1186550, 1186595..1186895,1187376..1187402,1188117..1188288, 1188348..1188766,1189338..1189476,1190473..1190777, 1190825..1190922,1191228..1191380,1191655..1191884, 1192622..1192864,1194174..1194304,1194904..1194993)) /gene="CBG25458" /locus_tag="CBG_25458" /standard_name="CBG25458" /product="Protein CBG25458" /note="contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00211 (Adenylate and Guanylate cyclase catalytic domain) , PF01094 (Receptor family ligand binding region) contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR018297 (Adenylyl cyclase class-3/4/guanylyl cyclase, conserved site), IPR001054 (Adenylyl cyclase class-3/4/guanylyl cyclase), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR001828 (Extracellular ligand-binding receptor), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:B6IES7" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001054" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR001828" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR018297" /db_xref="InterPro:IPR028082" /db_xref="InterPro:IPR029787" /db_xref="UniProtKB/TrEMBL:B6IES7" /protein_id="CAR98407.1" /translation="MDKFWIFWVFGFWNYGTDAQNLTATTPKTVIKVGIAAAQKTQAT SIGFNICGGALPLAEEYLRKNGFVGNFDFEYHVEYTECDLASTIRAGLYFMQNISVDV IIGPPCSEALRSMATLGTLYKKPVLGWGFVSQSDLADMTRFPYLVTVLPTSQTLGYAT NRLLETYKWDKVALLYYKSDIDYCHGVMNDVEAALNDATLYSVQVVLKAELDVADNET SNAVMNSLKSRVRIVLWCAQLGGEKRDYMIRTAQLGLDNPEYVHVMLSMRSIGFGVQT FVGKTTFKESGLTPVWEAFSNVSDGLEPLAKQGATNMLVVDLSSDVKDKAYLQYMQKN MVSYTRSPPISCATLECTNATASGMGAYARHLFDVFYLYGIGLTRLNSTSSAVYDDMG KFIPNLVTSFDGEMFGNLEILWSKNFSGLTGLVSINANLSRMPLYQVYGLDENYEQIS LMNLTFNNGTTVAYISLNYKNESVDVWHFWNNMRPLATPLCGFLGKNCPIPFWDQYRV LIFVGAGLILLMITMNLICFYCMLKNRRDEQARINSEWQISYVKLRELEKQRKGTSKR SIQSGPSNITGDSRQSTGSEFCENYTVMMYEKDMVLTKLEHENLNKFIGLSIDGSQFI SVTKLCSRGSLQDILSRGNFSMDYFFMFCIIKDIAEEIFQGMNYLGLNFLHKSFLRLH GNLRSATCLVNDSWQVKLAEFGTDNLLEEITPTKKRLMWAAPEVLRGSLTVSQMDPSA DVYSFAIVASEILTKKEAWDLADRKETYDEILYIVKKGGSSPLRPDIITDVPDVNPAL IALVKDCWAEDPEDRPNSENICVQLRDLMPKTKTNLMDHVFNMLEEYTSTLEVEVEER TKELTLEKKKADILLSRMLPRQVAERLKAGQTVEPEGFDSVTVFFSDVVKFTQLSQKC SPFQVVNLLNDLYSNFDTIIEEHGVYKVESIGDGYLCVSGLPTRNGYAHIKQIVDMSL QFMEYCRKFKIPHLPREQVELRIGVNSGPCVAGVVGLSMPRYCLFGDTVNTASRMESN GKASLIHLSAAAHSLLTTHYPHQYETNSRGEVIIKGKGVMETFWVLGAAGDVDVVSMS NRSTPPVTNERWGGGARAPEARSVSPEVRSVSSHGSRPGSQHMNNNDPLYRQYKMDSL KI" assembly_gap 1206681..1216388 /estimated_length=9708 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1219223..1219411,1220130..1220306)) /gene="CBG00846" /locus_tag="CBG_00846" /standard_name="CBG00846" /product="Protein CBG00846" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPH1" /protein_id="CAP22378.2" /translation="MVFLLLLIFISTVLSSQELYAPPILVGGSYVLSTNYEGAKNSST GIKRLLNSETEDTWQNGKKIAGANNNVKEVEDGTEISKMQLSDSGRYSRHPSDPVKEA LEWVVVSVQEGPKPPPHTY" CDS complement(join(1221513..1221890,1222553..1222660, 1223197..1223508,1223602..1223697)) /gene="CBG00845" /locus_tag="CBG_00845" /standard_name="CBG00845" /product="Protein CBG00845" /note="Predicted" /db_xref="GOA:A8WPH2" /db_xref="UniProtKB/TrEMBL:A8WPH2" /protein_id="CAP22379.2" /translation="MQGGRRDNWITIQIINFLIFGISVQAGKPNITLCRDVPSTWSNI STPEVVVLREHNLDDIRMTSALDDVECWIQKKFHVANQEVVRVETKGDNETICYAIST VDVKRGQMIVVISEGQSAQNCTPNIYGPLPNVLNKIMEKMDQTIPWWVILSVMPMVFF GISVSCYLVIQPRGGLTYTDEEVDFQIQEVDSASRVNVIQPPAPLQNLSFKTAQALPR TSSKTTTSSSESDDVEPPMRTAKEETENHPKTAISGEIPEKMNTAISEKSTKTMRLSA TVTNTTAGNSAETISLKTGRD" CDS join(1228399..1228435,1228482..1228630) /gene="CBG00844" /locus_tag="CBG_00844" /standard_name="CBG00844" /product="Protein CBG00844" /note="contains similarity to Pfam domain PF02117 Serpentine type 7TM GPCR chemoreceptor Sra contains similarity to Interpro domain IPR000344 (7TM GPCR, serpentine receptor class a (Sra))" /note="Predicted" /db_xref="GOA:A8WPH3" /db_xref="InterPro:IPR000344" /db_xref="UniProtKB/TrEMBL:A8WPH3" /protein_id="CAP22380.1" /translation="MGAVLFYCHLVIYNSLRRLSLFPILLVYRIRLSHSSRITKIQQV TSTRQTMDEHIKKNVWN" CDS complement(join(1229191..1229274,1229335..1229413, 1229800..1229975,1230920..1230994,1231036..1231151, 1231201..1231300,1232170..1232274,1232321..1232589, 1233821..1233935)) /gene="Cbr-srd-1" /locus_tag="CBG_00843" /standard_name="CBG00843" /product="Protein CBR-SRD-1" /note="C. briggsae CBR-SRD-1 protein; contains similarity to Pfam domains PF10319 (Serpentine type 7TM GPCR chemoreceptor Srj) , PF10318 (Serpentine type 7TM GPCR chemoreceptor Srh) , PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd) , PF10326 (Serpentine type 7TM GPCR chemoreceptor Str) contains similarity to Interpro domains IPR019423 (7TM GPCR, serpentine receptor class j (Srj)), IPR019422 (7TM GPCR, serpentine receptor class h (Srh)), IPR019421 (7TM GPCR, serpentine receptor class d (Srd)), IPR019428 (7TM GPCR, serpentine receptor class r (Str))" /note="Predicted" /db_xref="GOA:A8WPH4" /db_xref="InterPro:IPR017452" /db_xref="InterPro:IPR019421" /db_xref="UniProtKB/TrEMBL:A8WPH4" /protein_id="CAP22381.2" /translation="MATPTEIAYNRAALIESLEFTFLMDEVGKHLSEAICGFGIILNL LLIYVICLRTPVHMKSYAVLLFNFAIFDLLTCIASLLACQKTIFSGFSLTYIFHGPCK YVAPWLCYFCHCFVCHAMAHSQWILLISFIYRYRILVDTAPSVKTMSMIVTGFYSTSF IVFLFYYLDMGDTEALKQIMYDLHPDNHYEDVTIWGNLTVSGNTTIFTIPSLTAIIYM TVTCVPIYFLIHWCRNRTLSILASSACSMSETTKASHAKLILALSIQATIPCFWLLAS AIFTLAEFGVISGPIPENMTFRLMDCIPSSSPLVAFIFIAPYREGLMRLISKTGIYRK STQNQVSSVVEKTQNLGIQPTTQATVQSTNQQRARDLA" assembly_gap 1234406..1234533 /estimated_length=128 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1236381..1236640,1236686..1236734)) /gene="CBG00842" /locus_tag="CBG_00842" /standard_name="CBG00842" /product="Protein CBG00842" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WPH5" /protein_id="CAP22382.2" /translation="MDSGSDVEPPPKVSKTVDELVKKLEGLIGSHQYARQLLLKDDDR IGKKFFNASSGKHAFVIDFRISKGKTTAAVQYEGERKPIHIDFDHFQKSIDDGTFQFS " CONTIG join(CAAC03004212.1:1..20281,gap(113),CAAC03004213.1:1..34409, AC084614.1:10451..11005,CAAC03004214.1:378..14851, AC084614.1:25479..26005,CAAC03004215.1:135..1522,gap(1000), CAAC03002254.1:1..3147,AC084614.1:25470..26005, CAAC03002255.1:135..12099,AC084614.1:37973..39005, CAAC03002256.1:335..182898,AC084486.1:24473..25005, CAAC03002257.1:870..40955,gap(206),CAAC03002258.1:1..42270,gap(704) ,CAAC03002259.1:1..4189,gap(476),CAAC03002260.1:1..59827,gap(169), CAAC03002261.1:1..6571,gap(1000),complement (CAAC03003036.1:1..31055),gap(10),complement (CAAC03003035.1:1..5266),gap(791),complement (CAAC03003034.1:1..16479),gap(10),complement (CAAC03003033.1:1..33956),gap(82),complement (CAAC03003032.1:1..14300),gap(315),complement (CAAC03003031.1:1..15034),gap(598),complement (CAAC03003030.1:1..33346),gap(10),complement (CAAC03003029.1:1..1721),gap(5036),complement (CAAC03003028.1:1..20095),gap(156),complement (CAAC03003027.1:1..2079),gap(1000),CAAC03004524.1:1..2656,gap(141), CAAC03004525.1:1..2030,gap(1000),CAAC03004686.1:1..1611,gap(10), CAAC03004687.1:1..1389,gap(606),CAAC03004688.1:1..987,gap(180), CAAC03004689.1:1..1903,gap(1000),CAAC03004387.1:1..2905,gap(1000), complement(CAAC03004950.1:1..1868),gap(1000),complement (CAAC03004343.1:1..3370),gap(589),complement (CAAC03004342.1:1..1493),gap(1000),CAAC03001780.1:1..17178,gap(140) ,CAAC03001781.1:1..48570,gap(293),CAAC03001782.1:1..18648,gap(488), CAAC03001783.1:1..34227,gap(1103),CAAC03001784.1:1..2847,gap(21), CAAC03001785.1:1..11531,gap(421),CAAC03001786.1:1..37365,gap(197), CAAC03001787.1:1..1323,gap(312),CAAC03001788.1:1..11698,gap(114), CAAC03001789.1:1..14814,gap(657),CAAC03001790.1:1..55877,gap(10), CAAC03001791.1:1..748,gap(182),CAAC03001792.1:1..48772,gap(392), CAAC03001793.1:1..33349,gap(10),CAAC03001794.1:1..25409,gap(10), CAAC03001795.1:1..16857,gap(343),CAAC03001796.1:1..1150,gap(11098), CAAC03001797.1:1..7547,gap(554),CAAC03001798.1:1..7410,gap(259), CAAC03001799.1:1..11188,gap(668),CAAC03001800.1:1..1434,gap(1263), CAAC03001801.1:1..1204,gap(247),CAAC03001802.1:1..1828,gap(688), CAAC03001803.1:1..6299,gap(1380),CAAC03001804.1:1..36118,gap(585), CAAC03001805.1:1..9664,gap(1000),CAAC03003568.1:1..17983,gap(1000), complement(CAAC03002472.1:1..1235),gap(511),complement (CAAC03002471.1:1..11169),gap(953),complement (CAAC03002470.1:1..16720),gap(33),complement (CAAC03002469.1:1..35486),gap(9708),complement (CAAC03002468.1:1..18017),gap(128),complement (CAAC03002467.1:1..3293)) //