LOCUS HE600949 870552 bp DNA linear CON 17-SEP-2015 DEFINITION Caenorhabditis briggsae AF16 supercontig from assembly CB4, cb25.fpc4044a. ACCESSION HE600949 CAAC03000000 CAAC02000534 VERSION HE600949.1 DBLINK BioProject:PRJNA10731 BioSample:SAMEA3138181 KEYWORDS . SOURCE Caenorhabditis briggsae ORGANISM Caenorhabditis briggsae Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 870552) AUTHORS Howe K.L. CONSRTM WormBase Consortium JOURNAL Submitted (03-OCT-2011) to the INSDC. WormBase group, European Bioinformatics Institute, Cambridge, CB10 1SA, UNITED KINGDOM. REFERENCE 2 (bases 1 to 870552) AUTHORS Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K., Durbin R., Waterston R.H. TITLE The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics JOURNAL PLoS Biol. 1(2), E45-E45(2003). PUBMED 14624247 REFERENCE 3 (bases 1 to 870552) AUTHORS Ross J.A., Koboldt D.C., Staisch J.E., Chamberlin H.M., Gupta B.P., Miller R.D., Baird S.E., Haag E.S. TITLE Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination JOURNAL PloS Genet. 7(7), E1002174-E1002174(2011). COMMENT Details of C.briggsae assembly version CB4: To improve upon the C. briggsae nuclear genome assembly CB3, 167 AF16/HK104 advanced-intercross recombinant inbred lines were successfully genotyped at 1,032 single nucleotide polymorphism (SNP) markers. The resulting data were used to estimate high-density genetic maps. Sequences were assembled by combining the physical and genetic positions of the SNPs to inform the process of ordering and orienting the cb25 supercontigs into chromosome assemblies. 37 of the cb25 fingerprint contigs were split into 100 supercontigs to resolve discrepancies between the physical and genetic orders of SNPs. 638 sequence supercontigs comprise the CB4 assembly. The total nuclear genome content decreased from cb25 to cb4 because of the removal of three supercontigs containing mitochondrial genome sequence (totaling 20.1 kbp). Assembly_name: CB4 Assembly_program: Phusion Seq_technoloy: capillary (whole-genome-shotgun) Seq_coverage: 10x Annotation details: Coding seqences below are the result of integration and manual review of the following data : computer analysis using the programs Genefinder (version 980506; P. Green, unpublished data), FGENESH (Salamov and Solovyev 2000), TWINSCAN (Korf et al. 2001), and the Ensembl annotation pipeline (Clamp et al. 2003); similarity to other proteins from BlastX analyses (http://blast.wustl.edu); sequence conservation with C. elegans using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000); individual C. briggsae GenBank submissions; and personal communications with C. briggsae researchers. tRNAs are predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964). FEATURES Location/Qualifiers source 1..870552 /organism="Caenorhabditis briggsae" /strain="AF16" /mol_type="genomic DNA" /note="supercontig cb25.fpc4044a" /db_xref="taxon:6238" CDS complement(1408..>2307) /codon_start=1 /gene="CBG16473" /locus_tag="CBG_16473" /standard_name="CBG16473" /product="Protein CBG16473" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XP50" /protein_id="CAP34426.1" /translation="IRIPHSGFRIPDSYSVFRIPIPYSVFRILYSVFRIPYSVFRILY SVFRIPYSVFRIPYSVFPIPYSVFRIPYSLFRIPYSVFRIPYSVFRIPYSLFRIPHSG FRIPHSGFRIPDSYSVFRIPYPVFRIPYSVSCIPHSVFRIPYSVFRIPYSVFRIPYSV FRIPYSIFRIPHSGFRIPHSGFRIPDSYSVFRIPYPVFRIPYSVSCIPHSGFRIPDSY SVFRIPYSVFRIPYSVFRIPYSVFRIPYSVFRIPYSVFRIPYSVFRIPYSVFRIPYSV FRIPYSVFRIPYSVFRIEMIPRE" CDS complement(join(3686..3758,3838..3935,4544..4633)) /gene="CBG16474" /locus_tag="CBG_16474" /standard_name="CBG16474" /product="Protein CBG16474" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XP51" /protein_id="CAP34427.2" /translation="MNRLIVSMIALFAVLCAVSTATPLLYRAPQMYDDVQFVKRSNAE LINGLIGMDLGKLSAVGKRSNAELINGLLSMNLNKLSGAGRR" assembly_gap 8002..8644 /estimated_length=643 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(13675..13779,13824..13928,13974..14053, 14309..14429,14476..14581,15621..15697,15740..15913, 15958..16047,16091..16147,16423..16539,16627..16713)) /gene="Cbr-flap-1" /locus_tag="CBG_16477" /standard_name="CBG16477" /product="Protein CBR-FLAP-1" /note="C. briggsae CBR-FLAP-1 protein; contains similarity to Pfam domain PF09738 Double stranded RNA binding protein (DUF2051) contains similarity to Interpro domain IPR019139 (Leucine-rich repeat flightless-interacting protein)" /note="Predicted" /db_xref="GOA:A8XP53" /db_xref="InterPro:IPR019139" /db_xref="UniProtKB/TrEMBL:A8XP53" /protein_id="CAP34429.2" /translation="MSSYPSSGRRRPITRTEAEERALDKISREAEARMKLKRETREQA RQGRYQLLEKKVEEDAEAFRHDTASTSNTNGVSSSNQTQEQLHDKVIELQDRVQQVMF LYSQLDNEKSTLLYEVDLLKDELEEKDASLNLSSRECRDLTSEVKALKRTIDALHTTQ QQLKHEISQRDQLIQENGLCLVEEDPEEEGSESSNNASGEIRSGPYLFKRETIRLVDR VVPGAASLDEKIQKLIDTNKKMRKDYEELEQTIYTQRHARNQRDSTNVMPNQGVDDVN KDAAKQLAEMKLKMQDLERENTNQQGNVIRMEGQMKRYKSNADAAEKELDELKTQMRQ VKKELRDKENALDEQKEMNKHLQSRLEKMRMQRTGRPL" assembly_gap 17260..17744 /estimated_length=485 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(19311..19373,19440..19712,19761..20180,20227..20478, 20547..20747) /gene="Cbr-inf-1" /locus_tag="CBG_16478" /standard_name="CBG16478" /product="Protein CBR-INF-1" /note="C. briggsae CBR-INF-1 protein; contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase) , PF00271 (Helicase conserved C-terminal domain) contains similarity to Interpro domains IPR011545 (DNA/RNA helicase, DEAD/DEAH box type, N-terminal), IPR000629 (RNA helicase, ATP-dependent, DEAD-box, conserved site), IPR014001 (DEAD-like helicase), IPR001650 (Helicase, C-terminal)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XP54" /db_xref="InterPro:IPR000629" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014014" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8XP54" /protein_id="CAP34430.1" /translation="MTDAKNDVNGSSMVDADGLIEGNYDQVVESFDDMELKEELLRGI YGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHSDPHVQALV MAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLENGIHVVVGTPGRVGD MINRNALDTSRIKMFVLDEADEMLSRGFKDQIYDVFRSMPQDVQVVLLSATMPAEVLD VTDRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCN TRRKVDQLTEQMTSKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDV QQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIETYYTTQIE EMPESIADLI" CDS join(21189..21338,21389..21498,21575..21671,21721..21876, 21926..22059,22102..22191,22239..22383,22433..22528, 22584..22817,25140..25265) /gene="Cbr-byn-1" /locus_tag="CBG_16479" /standard_name="CBG16479" /product="Protein CBR-BYN-1" /note="C. briggsae CBR-BYN-1 protein; contains similarity to Pfam domain PF05291 Bystin contains similarity to Interpro domain IPR007955 (Bystin)" /note="Predicted" /db_xref="GOA:A8XP55" /db_xref="InterPro:IPR007955" /db_xref="UniProtKB/TrEMBL:A8XP55" /protein_id="CAP34431.1" /translation="MVKKNLKGRGDKLSANAPLDNQLEAGNVAKQREELREKQKRKRA ESETDEFVPDSLSSKILNEARKQLLEEAIDEQGAADTSRVSKRQRGSWLGDDDEKSND EDDDEEEDDNGFEDQIIELDPQDEADLARFLKKDAAQISTLYDIIQAKIEAKQNDAEL ALSQVDPNEFNMRDMDPEVVEMYEQIGQYMSKYRSGKVPKAFKIIPKMINWEQILFLT KPETWTAAAMYQATRLFASNMNPKMCQRFYTLVLLPRLRDDIDEFKKLNYHLYQALCK AIYKPAAFFKGLILPLLESGTCTLREAVIFSSVLTKVPIPIFHSAAAMLRIAEMEYTG ANSVFLRALIDKKYALPYRAVDGVVNHFIRLKNDERDMPVLWHQCLLALCQRYKNDLN AEQKAAIHELIRFHGHYLISPEVRRELESKETEDGHVITSVVVEGRKMDSMEF" CDS complement(join(22919..23236,23282..23566,23609..23880, 23995..24127,24170..24391,24437..24670)) /gene="CBG16480" /locus_tag="CBG_16480" /standard_name="CBG16480" /product="Protein CBG16480" /note="contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR000980 (SH2 motif), IPR008266 (Tyrosine-protein kinase, active site), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8XP56" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR000980" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR020635" /db_xref="InterPro:IPR035849" /db_xref="InterPro:IPR036860" /db_xref="UniProtKB/TrEMBL:A8XP56" /protein_id="CAP34432.1" /translation="MKKPNVNQNQQKKKKVPSHGGETDVITSLKKSSSTLFSQIRHVY NKKGPQEQQGSKTDSMETNEQPWFHGLLPREEVQLLLLKNGDFLVRMSEPSSGQARHL ILSVMQNESSQEAMHYVIRNADGKFSITGKENFDSLIELINHHKQNKLHEDNPKSVLI NAIGRQPWELNHSDVTMTKTLGEGAFGEVKLGTLKMEITTEARLMRGFNHKNVVRCYG VAAVDEPLLVVMELVKGGGLDGYLQKNSVPWPEKLDILTQVASGISYIHSKNIMHRDI AARNVLYGGGVAKVSDFGMSRVGTEYQMNPNKKVPIRWLSPETLITFVYTQKTDVFAF SVLCWEVIENGTQPYPEFKVVEVHQKVAKDDYRMPISDKAPSLIADVIKKCWVRNALQ RPSMAQVVQMMTSITGKKELSKSGGTVSAERAKIFGGVGNGPLSDPCREKTIIKTGRR NVKKRPTCQLSAGNSGAQLSSPSSSKEKKKKGGKSKR" CDS join(25567..25679,25724..25830,25872..26038,26084..26205, 26248..26333,26823..27067,27303..27605,27651..27725) /gene="Cbr-coq-2" /locus_tag="CBG_16481" /standard_name="CBG16481" /product="Protein CBR-COQ-2" /note="C. briggsae CBR-COQ-2 protein; contains similarity to Pfam domain PF01040 UbiA prenyltransferase family contains similarity to Interpro domain IPR000537 (UbiA prenyltransferase family)" /note="Predicted" /db_xref="GOA:A8XP57" /db_xref="InterPro:IPR000537" /db_xref="InterPro:IPR006370" /db_xref="InterPro:IPR030470" /db_xref="InterPro:IPR039653" /db_xref="UniProtKB/TrEMBL:A8XP57" /protein_id="CAP34433.2" /translation="MIIRSIGVRRIPQCASVLVNYASSSEMYYNQKRYISTSIRQPMS LIPTASSLVAASPSNIKPYLQLMRVDKPIGTWLLYWPCTWSIAMATPAGQLPSLYMLS LFGTGAFLMRSAGCVINDLWDKDFDKQVERTKLRPLACGLLSEKQAVGLLAGLLSSSL AILLQLNWFSVAVGASSMALVVGYPLAKRYTYWPQFMLGWYLHLLENSSLTQLLSLFH SRFFLIILPNPLFSHSTGLTFNWGALLGWAALKGDLSSSAPFWMYAAALQWTLVYDTI YAHQDKADDIMIGVKSTALRLGADTKKWLSAFGVGTVASLTACGMASDQTWPYYVALA ATTAQLGWQIGSVDIDNGADCWDKFKSNSWMGIILFTGIVMSTLLKEKEDPKQSKNAA TLEVEDIDDVVVS" CDS complement(join(27964..28186,28231..28423,28471..28525, 28593..28703,28753..29055,29650..29788,30262..30692)) /gene="Cbr-abu-13" /locus_tag="CBG_16482" /standard_name="CBG16482" /product="Protein CBR-ABU-13" /note="C. briggsae CBR-ABU-13 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XP58" /protein_id="CAP34434.2" /translation="MLLLLALLPTVAIAQNTFQNTIFDLPAQLGGEPVGVAAQAQGAP LLLQTADQKPPAPVGAQLPNAVPVPAAPQAVTVAPFTFPTLPTVAPFALPSHPTIAPF TLPTHAPFTFPTHPPLVFPPPSTPAPFVPPRYVLFIIASKCIPYAFVPQQGYQQQNNF QPYNGYPQQQQQQQQQGNQYYNYNNGNYNQQQQYNGYNNNNQQQQQYNNYNQQQQIVQ QPQQPQVPQQPQPQPQVPHQSVQPVQPQQPPVPSPQNGGPQQVQSFESNTQIVQPVRA VQANAQVVQPVLKPAAKAVATAVVDTDSSAKKASEFNKANAIEPPKPAHAEKVDANVD RHLWFAADYDVKQCRKSLNGIGVRFQKKFPSYLQKGGKDRELAELVEQRLLECERKSS ASHWDKVDTLLQKISLTKSEEGECRAGLIQERISCVNLLKYTCQFVDSSYHFKLVPAR ITIQEARQAESGAEKCRQVIRIVKQRLESGAVTL" CDS join(32693..32786,33153..33280,33331..33477,33624..33782, 35062..35176,35259..35422,35468..35759,35802..35883, 35940..36591,36668..37105,37929..38246,38298..38486, 38589..39266,39863..41350,41418..43034,43080..43995, 44045..44312,44441..44579) /gene="Cbr-let-711" /locus_tag="CBG_16483" /standard_name="CBG16483" /product="Protein CBR-LET-711" /note="C. briggsae CBR-LET-711 protein; contains similarity to Pfam domains PF12842 (Domain of unknown function (DUF3819)) , PF04054 (CCR4-Not complex component, Not1) contains similarity to Interpro domains IPR007196 (CCR4-Not complex component, Not1, C-terminal), IPR024557 (CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819), IPR018087 (Glycoside hydrolase, family 5, conserved site)" /note="Predicted" /db_xref="GOA:A8XP59" /db_xref="InterPro:IPR007196" /db_xref="InterPro:IPR016021" /db_xref="InterPro:IPR024557" /db_xref="InterPro:IPR032191" /db_xref="InterPro:IPR032193" /db_xref="InterPro:IPR032194" /db_xref="InterPro:IPR038535" /db_xref="InterPro:IPR040398" /db_xref="UniProtKB/TrEMBL:A8XP59" /protein_id="CAP34435.2" /translation="MMFSRSAPTEELKPTNMIRNRDNIERPISKRGVVSLLPKMSLGF VLNSCSCAYIDNLLAHDNVHRVKPHTFIIQRLVVICGRSTPAVANHAANIILSAFSFC QLDAPTKEFLGEEAALGLFHTILEYSTVNQQARTVMEIRGAQRLTAALCDLIEAYEKS MEYSAANKAISHLCKKLAGLYDPPVILPFLNKLVKIRRLREYLQPLFIAHCEYSVLSP ESAEVYNHIARGNFTSETLIDIIETFLDKEVKASVVSRNADPTKIVQYLITCSNANNA EIIQALAFMMYSNSRLNPSKEPGALDMDAQSVDTITTSRLGDPKLTQPVKDAIMDSSR EALQRRLEIYGPRILDSVDDFVKELKQAPVQRKMVTNSSIANALLFINQCNYDVTLAK PFDLQQYWPGANFVHGVIRYIKEKQIETDGHDESYDWFPNINWVEVVKELDDPKLYVS RDTFVLFSEIFPIMFKDDPQNFPISFFYSPWKHWDRQLHLYDHMLEYADIWNFSNYFH TKVLTPELNLKTIPDDTPPIVQLWNCQEFSNILLTLLNTQPQSPHRDFFKIGYTQTGD VCILALILSPTQWTTTRQDLVREYLPDWISKSPNVIPILNMSWNDPAISKHMRQHIIW SLTSIYSSDNTQLAKILDVAHDIKPTGLSELLNQSAKHLPFMVDLACLASKRDYLNLE KWIEDKEKAHGEAMTVALLQYIHKKYQKQQLVAALAPQGKTTSSSAPSDPLHVLIKFV RKRARKPHRQQYPLLFQVMKENSGRSSSVSSGGHQTVQAGGSQQQYGSGTGHPPSGAV PQQQSQPPLLQQQISQQSLVTSAAPPQPQMHSQQAIPGPIQRPAQFPPQPMFQPQPQA QQHPHMMNQPPPNTSQNSQPGMNLLMNMNQFNANNRDLLKVVQPAPPPSSSMSPSSQM MRSLIPPLAQRQNSNPSWNTTPAPPQQRPSGPPTPQQPMDFRGQIPDFVSQGSHQLQR SGSVSGRSATSGVTRTTTNSGFSVGAPIAGSAAAVAAAAQQPGMEDFASMTFAEDIQE EANSYFEKIYSVNNAMSVDTLIDLLKKFKTGNDRRERHVLACVVKNLFEEYRFFHEYP ERELRTTAAVYGGIIREDIISNVQFATAVRKVIESLSADSNTMLWTFGIVALQHCRSK LCAYPKVCTMIANSENFTKFPQTLKDYVIAGVKGELPPEGGRHTPVGTNPSSASSTPT PASAPTNWGAVARASSTDPKNALPANRTGNVLSYTNVDTLVQATNKDGAEIAQPAEAV VDKISFLFNNLSATNLAQKKDEVLEMIVEHGDGFTRWLAQYIVMKRVSIEQNFQPLYN QFVTAIDNAYLDQCIKRETFRNIRILLRTDKKTTVASNYSDRQLLKNLGSWLGSITIA RNKPILLNDLDLKSLLLEAYYKGQAELLFVVPFISKILTACSKTSLFTPTCAWIRSIL KVLAELHNEPDLKINLKFEIEVLCKELNVDLGVLPMDGILKDTEKLVRVPQQLCEVKV LGRPEAASPVQSQIRLSGSAEQLSGMSPAIPDQQKPATPQPTEAELQAGGGAGSQTEP QVTPNVTHFAYHDINVLTYDGLVPHVKIVANLPLFQLHPHAKHLVRPAMIHAIKELIG PVTERALKIAMTVTESLVRKDFALDPEEQNLKTASFHMMRAMTAGMAMITCRDPLAST MHANLAQAFSSSLRSSNGTPELKQMIEEASSTITQDNVELSTNFIVKTACEKATQEIE KRLEADYQKRINAKTEGGAYRDEAAVAVHSQLPKVIATEPGPTSSALMNIYTQFSSRI CGFKANSGEDLLGSEPNSANPPVQTHSKDMDVICQQLQIIIKEVDQTTQAQPHLNNPA FQTVCWIRDWMQQITVSKDANKLMALVSRCTEHLLHAYRLEGQPTKNLLDVEWARRLR DLFIGLMRLLQAYYPLVDLSRRITSAIMQIRSDYKWNLEGIEILFKQNLLQSTLWDQY LADSMDNGGNMEAVCFAQKFVRSIGGGDMSRLQYLKERFPMTCDQLTKLHQLQSATRT DGLNNGINNGSHHHPGIQHQQQQQQPQVTLPMDAAPMPQASAEAMAQRGYDDQEMTAK VEVIMREWISLCYSPTGQRSPQESLAQMIQLMHEHGVLATDDKITQFFRLCVENCVDI SVRVMKSEQIANGLPTNLIRHRCYYTLDAFVKLMALMIRHSDNGQSQNKINLLKKLLN IIVGVLHMDHEVRKTDFNAMPYHRILISLFNEITGPDPLKLLEPIAWSILEAFGQTFF ALQPRRMPGFAFAWLDIVGHRNVIGRLLANTGIAETVDSVKTAATYTQLIISHLKFLA PFLRNIQLPKSIAILYKGTLRVLLVILHDFPELLCEFHYVICDTIPPNCVQLRNLILS AFPHEMRLPDPFALNFKQVDTIPEMAVEPKSNLNMATIIPDNIRVPLDEYLANRTPVD FLPRLPTLLQTPNQSGTKYNTTVMNALVLYVGIRAIENLHLRRQRISTLSIAHTSFMD IFQNLAIQLDTEGRYLLFNGIANQLRYPNAHTHYFSCVFLYLFKNSTNDTIQEQITRI LFERLVALRPHPWGLLITFIELIKNPTYNFWRYEFTSCAPEIQRLFQNVANTCVPAQG SQYAQNQDGSSGMLGNDAGGLNQQQQHPSSN" CDS complement(join(49404..49568,49618..49744,49788..49916, 49971..50081,50136..50185)) /gene="CBG16485" /locus_tag="CBG_16485" /standard_name="CBG16485" /product="Protein CBG16485" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPB5" /protein_id="CAP34436.2" /translation="MKKEFGVEKTAHALERSIQRRLEKVENLVGLSTMEKVKLLVLFS RRLTPVFAKVSPDGIILQSPPVRNVSDTQVTAKDLPIEVTRAEDWILDKKSELPQDIS LRKLTDQIEAFAYNYDMEEWFKQKARRAVWLYKDKDQTIPLQEFNNLFDAVARSLTRE SVQKTDVNTMQLMNFFNILGENLNRSFGGDAMK" assembly_gap 54357..54366 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 55323..55978 /estimated_length=656 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 56524..56960 /estimated_length=437 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(57372..57560,57610..57885,57956..58284, 58331..58460,58516..58739,58794..58860)) /gene="Cbr-rpn-6.1" /locus_tag="CBG_16487" /standard_name="CBG16487" /product="Protein CBR-RPN-6.1" /note="C. briggsae CBR-RPN-6.1 protein; contains similarity to Pfam domain PF01399 PCI domain contains similarity to Interpro domains IPR013143 (PCI/PINT associated module), IPR000717 (Proteasome component (PCI) domain)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XPB6" /db_xref="InterPro:IPR000717" /db_xref="InterPro:IPR036390" /db_xref="InterPro:IPR040773" /db_xref="InterPro:IPR040780" /db_xref="UniProtKB/TrEMBL:A8XPB6" /protein_id="CAP34437.2" /translation="MDTMTSLPHQNDQNVIRHLTNLVKSPASGDDDIKKKEDSIMELG NILAQNKQTEELRKMIEQTRPFLVSLGKAKAAKLVRDLVDLCLKIDDQDGDIKVGLVK ECIQWATEQNRTFLRQTLTARLVRLYNDLQRHTQALPLAADLIRELKKVDDKDVLVEV ELEESKAYYNLANIGRARASLTGARTTANAIYVNPRMQSALDLQSGILHAADEKDFKT AFSYFYEAFEGYDSVDEKSAALTALKYMLLCKQSSVRKTCLKVQWIYLEAMKAIAAAA QKRSLKDFQAAFGAFPQELQMDPVVRKHFHSLSERMLEKDLCRIIEPYSFVQIDHVAQ QIGIDRSKVEKKLSQMILDQKLSGSLDQGEGMLIVFDIATPDEAYQTALDTIHAMGEV VDALYSNASKIN" CDS join(58884..58903,59097..59112) /gene="CBG25919" /locus_tag="CBG_25919" /standard_name="CBG25919" /product="Protein CBG25919" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK51" /protein_id="CAS00281.1" /translation="MLKICILTAKR" assembly_gap 59898..59929 /estimated_length=32 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(60858..60945,60992..61157,61201..61354,61403..61531, 61578..61781) /gene="CBG16488" /locus_tag="CBG_16488" /standard_name="CBG16488" /product="Protein CBG16488" /note="contains similarity to Pfam domains PF01243 (Pyridoxamine 5'-phosphate oxidase) , PF12766 (Pyridoxamine 5'-phosphate oxidase) contains similarity to Interpro domains IPR019740 (Pyridoxamine 5'-phosphate oxidase, conserved site), IPR011576 (Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain), IPR024624 (Pyridoxamine 5'-phosphate oxidase, Alr4036 family, FMN-binding domain), IPR000659 (Pyridoxamine 5'-phosphate oxidase)" /note="Predicted" /db_xref="GOA:A8XPB7" /db_xref="InterPro:IPR000659" /db_xref="InterPro:IPR011576" /db_xref="InterPro:IPR012349" /db_xref="InterPro:IPR019576" /db_xref="InterPro:IPR019740" /db_xref="UniProtKB/TrEMBL:A8XPB7" /protein_id="CAP34438.2" /translation="MFIQFILVPVCRILSRRTLAMDTPSIDIQNIRAKYNNSQEPYLL EEKLPTTDPFSLFDIWFRDVASQSDLTFEEINAVSLSTVGKDLRPSSRMVLLKAYTPT GFSFFTNYTSRKGNQLKENPNAAMLFYWPKVNRQVRVEGVVEKLPNEMAVAYWNSRPL ASRIGSKSSLQSEVVPNRQFLESKKTELTELAAREGGDAITKPNSWGGFHLVPQYFEF WQGQSDRLHDRIVFEQDREAWLIKRLSP" CDS join(62535..62614,62659..62847,62892..63102) /gene="CBG16489" /locus_tag="CBG_16489" /standard_name="CBG16489" /product="Protein CBG16489" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPB8" /protein_id="CAP34439.2" /translation="MIISEMIMTLDSKFNTRTKASVVCIHLISVGAHLSQGKVKKFYY QLERNISELSRKAITKARNDGRVSRRFLGRKYTAFSHDNTSRTIRRFVSARDSSPINQ NSVLARRSMSLSPIPFSPSPECSVDLSKNTTGLLLDLSAAMNVSSDSKSNANVTQED" CDS complement(join(63871..64109,64611..64704,64748..65053, 65096..65666,65711..65919,65966..66177,66225..67040, 67087..67573,67623..67827,67881..68053,68095..68199, 68241..68273)) /gene="CBG16490" /locus_tag="CBG_16490" /standard_name="CBG16490" /product="Protein CBG16490" /note="contains similarity to Pfam domain PF00929 Exonuclease contains similarity to Interpro domains IPR013520 (Exonuclease, RNase T/DNA polymerase III), IPR006055 (Exonuclease)" /note="Predicted" /db_xref="GOA:A8XPB9" /db_xref="InterPro:IPR012337" /db_xref="InterPro:IPR013520" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR028881" /db_xref="InterPro:IPR028889" /db_xref="InterPro:IPR036322" /db_xref="InterPro:IPR036397" /db_xref="InterPro:IPR038765" /db_xref="UniProtKB/TrEMBL:A8XPB9" /protein_id="CAP34440.2" /translation="MANAGTSQGNDWRYIPPLNINTVIQNPVSSIKFDPYEELFWTGS ATGKVASWLPTNHFSRYTAFAISRHSGVHHIEPTENAIFTLTSTNLRATSRQGVPLGT YSPKTMQNMVSLHRLPGSSTFVLGGFDHKLIIYDFAKEKEIRTTDLESDETGIIIRYN GTNTFTADSLGRIHVKNPKNFETVRIITCHSDKVLDFDVQGHHLVTCGLSLSVSFSFT VIYFHFRQSKHSEKFIKVFDLRMYKHVSPISMNHCPQFVRFMPSYCDRLAVVYQTCFN RDQIDVQPNAWTNYPAGVRMLDMMSPVTSSIEFSMDTTIITSFDYSSTKNFLAIGNSM GMVNLFTDRDQPLVNENSKDTIFALPPVQPPVSFVIDDVSHSVGSIPIPFPQEDLVSN WPSELTQIVHRPRKPPSEMKNAKSIHYALQITNPRIHTNLKLFNIVPYFLDHEFIEIP SDQKVMESPIPVSIEKVKVSKLYKKRAPPVIQGANRRRKTTDDTVECYKWNVIRHVTM QSTHAMNLFANAVVQVVYYMTSLRNIVLQHICLNDSCVTCELHFLFTAFPSKIGLEEE IVTMNLAWALARNGVSLKTGGVLSAIQQVTRTILNDMTDKDSVDSTVVTKFDRHLRCV RCQKVQNVEQGTVSFLTLNYASIQQASFCQLVEKSLHLGPDSGERQCEDCKEKTRMEC KRKIRELSPVLLIDTNTSSVEYLDFWQRQLAADESRPVSFGEFGRVPESPLEKKQCRY GEACRDQRSCKYGHGLIDWAAEQTKLLDDIDGFGWKHYLPSRISAKVCDGIVRLSDIS DVPNYDEPGAVIYELDAIISLIGNGQQDVVWTHPVTLLRESPVASTAWTLINEQLVSR LHDHEARHLDARWKLPAFIGYRQKGYEVAITERNVSDELFFAENNVALCLNDSAAVKT IDELPKKGDLVGLDAEFIRIKACTNLLEFNGKSVQTKALGRASCLDVTGEKIIFDDHI KLDEDVEVVDYLTKFSGIVESDLSPQTSDKYLTTHKRLMLRMHVLIQRGVVFVGHAVH NDFAVINVHIAEPQIIDTVNLWRLGAQRMLSLQFLVREVLGESIQEFSHDSVVDARYT LKLYHKYLEMKENGIFGPEMRRMYAIMPPLACSPNPSGSPLTVNTLRLPQNETAGPAP NSV" assembly_gap 68850..69544 /estimated_length=695 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(70719..70976,71023..71843,71890..72058, 72106..72249)) /gene="Cbr-eft-3.1" /locus_tag="CBG_16491" /standard_name="CBG16491" /product="Protein CBR-EFT-3.1" /note="C. briggsae CBR-EFT-3.1 protein; contains similarity to Pfam domains PF03143 (Elongation factor Tu C-terminal domain) , PF03144 (Elongation factor Tu domain 2) , PF00009 (Elongation factor Tu GTP binding domain) contains similarity to Interpro domains IPR000795 (Protein synthesis factor, GTP-binding), IPR004160 (Translation elongation factor EFTu/EF1A, C-terminal), IPR004161 (Translation elongation factor EFTu/EF1A, domain 2), IPR004539 (Translation elongation factor EF1A, eukaryotic/archaeal)" /note="Predicted" /db_xref="GOA:G2J6X0" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004160" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR004539" /db_xref="InterPro:IPR009000" /db_xref="InterPro:IPR009001" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR031157" /db_xref="UniProtKB/TrEMBL:G2J6X0" /protein_id="CAP34441.1" /translation="MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK EAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNM ITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEP PFSEARFTEITNEVSGFIKKIGYNPKAVAFVPISGFNGDNMLEASANMPWFKGWAVER KEGNASGKTLLEALDAIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGM VVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPA KEARTFHAQVIIMNHPGQIAAGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPK FLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGSSGK VTKSAQKAAPKKK" CDS join(72713..72777,72921..72999,73044..73138,73181..73241, 73288..73544,73589..73736,73778..74008,74881..74967) /gene="Cbr-rfc-4.1" /locus_tag="CBG_16492" /standard_name="CBG16492" /product="Protein CBR-RFC-4.1" /note="C. briggsae CBR-RFC-4.1 protein; contains similarity to Pfam domains PF00004 (ATPase family associated with various cellular activities (AAA)) , PF05496 (Holliday junction DNA helicase ruvB N-terminus) , PF03215 (Rad17 cell cycle checkpoint protein) contains similarity to Interpro domains IPR003959 (ATPase, AAA-type, core), IPR003593 (ATPase, AAA+ type, core), IPR008824 (DNA helicase, Holliday junction RuvB type, N-terminal)" /note="Predicted" /db_xref="GOA:A8XPC1" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8XPC1" /protein_id="CAP34442.2" /translation="MSEAREVDSSKKQKVLTWTEKYRPKTLDDIAHQEEVVTMLKGAL QGKDLPHLLFYGPPGTGKTSTALAFCRQLFPSSIFRDRVLDLNASDERGISVVRQKIQ AFSKTTLGSSNKEDVLRLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVS RLIPPVVSRCAKFRFKSLPAEVQVQRLRTICDAEGTPMSEDELKQVMEYSEGDLRRAV CTLQSLAPILKNVSYIPGDESARNCYLRGSSDALLISDLCKTLPSADVPQIISMTKSI TKSCTGVAFIRCCFHQMLDDNLINDENISVMGKLVAVCEKRILDGCDLENNLLDFLLT LRETIH" CDS join(75789..75925,76271..76283,76353..76431,76872..76931, 76978..77234,77279..77757,77805..77865,77907..78104, 78153..78188) /gene="CBG16493" /locus_tag="CBG_16493" /standard_name="CBG16493" /product="Protein CBG16493" /note="contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8XPC2" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="UniProtKB/TrEMBL:A8XPC2" /protein_id="CAP34443.2" /translation="MGNVATRKRPGCHHTARSDENEEEEDGPARKRLGLQKIIQKMNI RSKHHKLAFKSRLQKLKNCRPHLKRRTYKVEEADPRPPLPRFIVDDYDNYEKPETANR KEFAIPWFEHLFLPEFPTRSVINEKSFILERQLGRGSFGVVYCASAIHDSERKFAIKM QEKREIISKRAVLQVKREASIQRLLPAHPFIARTYSTWQTRTHLYSLLQYPTGSTGDL FSIWRQRGSLSEAAIRLIGAELASAIDFLHRNDVIYRDVKLENVVLDQWGHALLIDFG LAKKLKPGCSTGTICGTLQYMSPDVASGHTYSHYVDWWSLGVLLHILLTGIYPYPNSE ATHHANLKFIDYSTPIGCSREFANLMDRMLAVSQTHRLCSFTVLHAHPFFRSINFSKL EQKDYTPASEIGNAEYDTYQQNDETLDDALFKENYDFDRFDYFNDRF" CDS join(80094..80185,80230..80512,80566..81153,81232..81285) /gene="Cbr-ceh-20" /locus_tag="CBG_16494" /standard_name="CBG16494" /product="Protein CBR-CEH-20" /note="C. briggsae CBR-CEH-20 protein; contains similarity to Pfam domains PF00046 (Homeobox domain) , PF05920 (Homeobox KN domain) contains similarity to Interpro domains IPR008422 (Homeobox KN domain), IPR017970 (Homeobox, conserved site), IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:A8XPC3" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR005542" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="UniProtKB/TrEMBL:A8XPC3" /protein_id="CAP34444.1" /translation="MVGTNPNNLTELLDAVLKINEQALDDNDSTKKNELQCHPMRQAL FDVLCETKEKTVLSVRNPVDEAPEDPQLMRLDNMLVAEGVAGPDKGGSLGSDASGGDQ ADYRQKLHQIRVVYNEELRKYEEACNEFTQHVRSLLKDQSQLRPIAQKEIERMVYIIQ RKFSGIQVQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEVLNEYFYGHLSNPYPSE EAKEDLARQCNITVSQVSNWFGNKRIRYKKNMAKAQEEASLYAAKKNAHVALGGMAGN PYGMLPGAAAAAGLLNPYGPMNIPGQDALHMGMPPFDLSVYNPQLMAAAQYQQQMDNT DAKP" CDS complement(join(85274..85553,85805..85836)) /gene="CBG25920" /locus_tag="CBG_25920" /standard_name="CBG25920" /product="Protein CBG25920" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK52" /protein_id="CAS00282.1" /translation="MVYRNEREMRKNNRQKRQNVASSEYSLYFYIKEFLRSFHFSRKM EVSPSGVGAAACKMGGAIGERECLRLSSLNTIQPVYDHTVRWMDEKNEKKTEKCLCEK T" CDS join(90722..90791,90842..90999,91055..91146,91196..91310, 91360..91843,91895..92098,92147..92306,92355..92493, 92539..92817) /gene="Cbr-prk-1" /locus_tag="CBG_16496" /standard_name="CBG16496" /product="Protein CBR-PRK-1" /note="C. briggsae CBR-PRK-1 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8XPC4" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="UniProtKB/TrEMBL:A8XPC4" /protein_id="CAP34445.1" /translation="MIKRKLQDLAVCCSYQVDFLHEKKHSVKEFKRKYEVLDEIGRGG FGIVYEATSRQEGQQPVAVKFVQHKHVRSWTMTCRQLIPSEVCHLETCEDIPGVIKIL DWFANSKGFLIVMERPENCMDLFDMISVHGPLNEDMAKFIFKQVITTVFDMYSKHGLL HRDIKDENLIVNMNTGEVKLVDFGATAYAEKATKKEFQGTRSYCPPEWFRDQLYLPLE ATSWSLGVLLFILLTGKLPFKNEIQICLGNVRFPPELSKEVCQLVKSCLTTSTSARAS LSQIAAHPWLETDRQFYNADLTFEEALMEIKNPVPVIEDKEAEDEDNELNDVVILTRS RDSRTDMDMESICTMVTAVEDRYEPSIAVKEFVAEEIVGTGETTNLMRSESRYDNISS SSFCDYVSLVSSSYDDQFTSTSDIYQSACEVFPHTSSSTSLSRSIGAVKSASAYNLVR MRKKSSIFKSFDTELDPVSEIDNQPLIPETSSAMGQSTYSNDEDVTISEEVITAATSP PLSSSPRKGSLQCSESTPRSRDSVIRMSRHRPLQFVMDSSSPPPALAIFQVNPTASVG " assembly_gap 94675..98247 /estimated_length=3573 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS 98988..99869 /gene="Cbr-col-8" /locus_tag="CBG_16497" /standard_name="CBG16497" /product="Protein CBR-COL-8" /note="C. briggsae CBR-COL-8 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)" /note="Predicted" /db_xref="GOA:A8XPC5" /db_xref="InterPro:IPR002486" /db_xref="InterPro:IPR008160" /db_xref="UniProtKB/TrEMBL:A8XPC5" /protein_id="CAP34446.1" /translation="MSNTLIWAGSASMLVCVVVALYTMMGLLSDIQQLQSDFDDEMFE FRAITKDTWQRIVNKHMHPQGVDTDSIPTPPTFETLFGVRKARQAFPEQCNCGPKSEG CPAGPPGPPGEAGQRGEPGNNGDDGKPGAPGVIVAITHDIPGGCIKCPPGRPGPRGPP GLVGPAGPAGGQGRHGPPGPLGGQGGPGEQGDAGRPGSAGRPGPQGPRGEPGTEYRPG QPGRIGPPGPRGPPGPEGNPGGAGSDGNQGPQGHPGVPGRPGIPGKSGTCGEHGSPGE PGPDAGYCPCPGRSYKA" CDS complement(join(100097..100180,100228..100368, 101616..101683,102222..102317,102365..102566, 102608..102811,102876..102914,103069..103332, 103383..103450,104022..104116,108510..108571, 108798..108860)) /gene="Cbr-lgc-38" /locus_tag="CBG_16500" /standard_name="CBG16500" /product="Protein CBR-LGC-38" /note="C. briggsae CBR-LGC-38 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR001390 (Gamma-aminobutyric-acid A receptor, alpha subunit), IPR018000 (Neurotransmitter-gated ion-channel, conserved site), IPR006028 (Gamma-aminobutyric acid A receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain)" /note="Predicted" /db_xref="GOA:A8XPC7" /db_xref="InterPro:IPR001390" /db_xref="InterPro:IPR006028" /db_xref="InterPro:IPR006029" /db_xref="InterPro:IPR006201" /db_xref="InterPro:IPR006202" /db_xref="InterPro:IPR018000" /db_xref="InterPro:IPR036719" /db_xref="InterPro:IPR036734" /db_xref="UniProtKB/TrEMBL:A8XPC7" /protein_id="CAP34448.2" /translation="MTTWILLSLFLIGVVITEHPPLIKSDKLIEYAPQASTEPTLGDQ SNENLENNVTRLLDKLIASHDRRIRPNYGGPPIEVNITAHVTTISAVSEVSMDYTLDL YLRQIWKDPRLAWESDVEDSLTIGIDMVKTIWTPDTFFPNEKKSFFHEATSHNSFLRI DSHGNVLRSIRLTVTANCPMSLHTFPLDRQECALEVESYGYSTKDIIYHWHGANAVTI DENVHLAHFTIGEHYHIERTISLSTGNYSRLTAYFMFKRNIGFYLIQIYFPSSLIVVI SWVSFWLNREAVQARVAIGVTTVLTMTTLMTSTNASLPKVSYVKSLDVFLGVCFFIVF ASLLEYAAIGYLMKRNRSVPAASPVQYYETGDGVLKREASRKKSRNRRDSSMKNYQNN NIHHRPSDGHVDQRIPLLSMVPMPPIPFKPQNGAWGKVRPAQVDLFSRFAFPIFFVIF HIIYWTYYINQ" CDS complement(join(111083..111241,111293..111488, 111536..112084,112136..112240,112296..112504, 112555..112866)) /gene="CBG16501" /locus_tag="CBG_16501" /standard_name="CBG16501" /product="Protein CBG16501" /note="contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8XPC8" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/TrEMBL:A8XPC8" /protein_id="CAP34449.1" /translation="MLGQIKANVNKKVNKVVASKSTTAPPAPPPNTPIRHRRRKGKNG KKEKGAERSPEKPGIGMKKEDSSSVSEDEASSKKMKKKSVIGWIGGSVDKVVNLFDRD KHPPGQIVDNKPDPKYSAQKILQSERPDLFVGNNTADLSHDEVQLLDEHLLRKGELRT DSSFKLGKVVDIDSKIKVGSGDEMDVMCLYAYGRFGAVYMVLKETDSEQERRGISNCF ALKTSRRMYASSRINHEIRIVNSIYSNAKKYGNPTHITPIFFHGQSGGTPYLMMPMLD SSLEKIRQEIGYKLPWSDAFFIGQEALVGIKECHMHSIVHRDIKPMNLLLGVQNNKIW WLCDFGDACHIGTNQCLSPPDSLTLPFLSRDAHRGIGQKIPASIRMDFESWFYMLLDL FIALPWKLYIEEADTLAAKNAFWASIDSFFAKNEEKIPDQLIGIAKLVAGNLNESSHS TISAFLKEGFHKSLEDSPWKPSWTTKRKPRQLIPNKKIKKKDGASKKSKRGKKAKKGL F" CDS join(115374..115391,115479..115568,115617..116003, 116049..116129,116177..116373,116419..116554, 116601..117030,117074..117228,117279..117524) /gene="CBG16502" /locus_tag="CBG_16502" /standard_name="CBG16502" /product="Protein CBG16502" /note="contains similarity to Pfam domain PF02886 LBP / BPI / CETP family, C-terminal domain contains similarity to Interpro domains IPR017942 (Lipid-binding serum glycoprotein, N-terminal), IPR001124 (Lipid-binding serum glycoprotein, C-terminal)" /note="Predicted" /db_xref="GOA:A8XPC9" /db_xref="InterPro:IPR001124" /db_xref="InterPro:IPR017942" /db_xref="InterPro:IPR017943" /db_xref="InterPro:IPR032942" /db_xref="UniProtKB/TrEMBL:A8XPC9" /protein_id="CAP34450.2" /translation="MRNALLISICATLASCQIPSKDLADMNPLLFNDRTLKGPGVIAR VTPTGTQYVASVVAAAFSSHFADIKPPKERKDHQLSSVPTVTLRRLMLETLQLEKQLV STTTNDGLVRITVRNISVSTSAILSGELRGIKLQDNVTFRTPSLRLDVAIRIMKNSGG NPALKMESCKINNQGIKLVTKPMDPRNGKSIADGIANDANAIFSDLICAKIEHIVTNR VNQRFALLSSRISLENSKNFDIVKIIMQAEERMKRLVRQNMMRSNKTLRRNVHAHNAR RVSRDPVRGKRQFDEEKFHLFLNSFNFSRADSLMLDYSMITSPSLTSRGIELQTSGEV FQSGHTTPFGAGPIFLPRVPNPSQMLQIVVSDFVPNSLMFHGHRIGLFDTRIDWTTPQ FGPVMRTTCDLSTGSLFCIGDLFPALREMLPDRNIAFAFTTLKAPAVIVQPEEKGGIH FSLLGLIRLISDRNEPIGEMEIRIEALMKMKLTPKSVKGKVTIEEIQFTSRSPRILLQ EELDDAGFLSREILQRMVNDILRQGIPIPIHPLFKLVKPKLTLFSRSMLLETNFLLNE HIIAQLTAETLVA" CDS join(119018..119200,119262..119344,119405..119485, 119531..119639,119686..119773,119821..120196, 121641..121722,121783..121877,121929..122041, 122087..122169) /gene="Cbr-rfl-1" /locus_tag="CBG_16503" /standard_name="CBG16503" /product="Protein CBR-RFL-1" /note="C. briggsae CBR-RFL-1 protein; contains similarity to Pfam domains PF10585 (Ubiquitin-activating enzyme active site) , PF00899 (ThiF family) , PF02134 (Repeat in ubiquitin-activating (UBA) protein) contains similarity to Interpro domains IPR018074 (Ubiquitin-activating enzyme, E1, active site), IPR000594 (UBA/THIF-type NAD/FAD binding fold), IPR000127 (Ubiquitin-activating enzyme repeat), IPR019572 (Ubiquitin-activating enzyme)" /note="Predicted" /db_xref="GOA:A8XPD0" /db_xref="InterPro:IPR000594" /db_xref="InterPro:IPR014929" /db_xref="InterPro:IPR023318" /db_xref="InterPro:IPR030468" /db_xref="InterPro:IPR033127" /db_xref="InterPro:IPR035985" /db_xref="UniProtKB/TrEMBL:A8XPD0" /protein_id="CAP34451.1" /translation="MVSVDPLATERWRSVRRLTDRDTAYKVPWFNPGPKNFEAVQNVK VLVIGAGGLGCELLKNLALSGFRSIDVIDMDTIDVSNLNRQFLFREADVGKSKAEVAA AFVEQRVSGCHVTAHNCRIEDKDPDFYRRFSMVICGLDSIPARRWINGMLCDLVLEHA DGTPDMSTIIPMIDGGTEGFKGNARVIYPKMSACIDCTIDLYPPQVNFPLCTIAHTPR LPEHCVEYIKVVVWPEQKPFEGAALDADDPEHVEWVLQGALLRAEKYNIRGVDRRLTS GVLKRIIPAVASTNAVIAASCALEALKLATNIAKPIDNYLNFTQIHGAYTSVVSMSKD ESCHVCNGGRLPIEVSSTYTLEELINSLMERYHLKNPTLETAQRKLFCISLLFPQLEE ESKANLHLFLKDIVADGDEILVSDEVLARAITLRINFV" CDS complement(join(122436..122606,122653..123583, 123635..124821,124872..125414,125461..125743, 125793..125995,126065..126241,126284..126639, 126938..127037,127143..127625)) /gene="Cbr-cyk-1" /locus_tag="CBG_16504" /standard_name="CBG16504" /product="Protein CBR-CYK-1" /note="C. briggsae CBR-CYK-1 protein; contains similarity to Pfam domains PF02181 (Formin Homology 2 Domain) , PF06367 (Diaphanous FH3 Domain) contains similarity to Interpro domains IPR010472 (Diaphanous FH3), IPR015425 (Actin-binding FH2), IPR003104 (Actin-binding FH2/DRF autoregulatory)" /note="Predicted" /db_xref="GOA:A8XPD1" /db_xref="InterPro:IPR010472" /db_xref="InterPro:IPR010473" /db_xref="InterPro:IPR011989" /db_xref="InterPro:IPR014768" /db_xref="InterPro:IPR015425" /db_xref="InterPro:IPR016024" /db_xref="InterPro:IPR042201" /db_xref="UniProtKB/TrEMBL:A8XPD1" /protein_id="CAP34452.2" /translation="MSSDDYESIDTPRVASLSDLTRLPTQRHSHYSTDEEEADVTPTP SSSNSATKNVLLAPLESMFLPHNSENSDDLEEPQIQLREKKKKAPRAQDATLSHFMGD DAPGQKFKRRSAERHSMLAGAADFASRRSPFHFSGAGSGRWTELFSSNRFKRKTRQKL NNGPSSSTNSNNEDYGTYGGTRSIGGMSVISNSSVPGESYFQSCTEEQLRAEFRQIMV IFPKVIITIISFQLDKNCPESRIDEIVATTPTEQMKSLIANARKTDDVAAKQQPPEWN LRVLENILKSQNILECKQDIVTVSIQLKCQSVSFLYQFADSLRSESGRTGADLICHLF SLVLKRLRNADVGSKLEFDLIDLLQEVVRCIRTIVNTHLGLELVLRRKSPVCSLLIQT MCILNRRKFSDDEPNEIRMLRENVVMICGSLMFVSHETLESRAIEMTGQQKMFMELTT IAKAESKRLGETVSRFRPLVSCIQFVESRDKKLTMRVLLMLNMLINGVDRNTSDDQMW TEDTMWQARMRLRSEAAKDGLSKYIEKFTSSDSSDSQVREVAQNMLTEHNGDIETLVG KLDNVKGEYDTLDGCFELLAANSEATGTETILLSILQLLTLTNEDMATKRAYMKLIEA SILEIIFHRTPIDPESEEKFVFEIPIAEIIGKRNCESFSFYGIISERFQDDEMAKKLR QATSAKQEAVAMQGEYWKKLLEFQNEAEVLRKHISDPKTPLPPPTKNTLSAPSTSSGT SGLLPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPVRGGPPPP PPPPGSGPPPPPPPPPPGGFKGGLPPPPPPGMFAPMAPVLPDYLPPKKVPKVDGPMRK FPWGAHTINPRDIPRDSFWVGTNEEQLTNGRMYDRLRTKFATKPAAGGAILGGKIETK KKLKTAQVIQDDKLLQKLGILQGSIKITHSELKLALLEVNEKVLTVGFLEQLRAAMPV EKELIDKLRAVDKAQFEEMPEGEQFLTRLLQIQGLPLRLDLILFKMRFQETLNELKPA MSSVMEACEEVRKSYGFQTFLKLVLATGNFMGGATKNYSSAYAFHMKMLTRLVDTKDV DNRHTLLQHLIEEMKRVAKDEARFALTDFHHCIESSRVNADEIRKTVQLTENNIKKLE NCLKVYKLQGDRDKFEEKMHPFLEKARKEFATVSTMSAKMKNDWESVVKFYAFNATKY PMEEFFADIRTFSEQYATAWKELDAEAEAATAEAKRKEAVVETQKRKLQQQEQKQRIP LQERPAINRMPRTPAMIRVSTAADKVGVLDELERATGNDAFLQTLMSATNSRTPRAGI PSRTRGGGRLIGGLDRQRSRHQNQARQALNFGEDEPVLSGQFPRARNTSQHDQKRIVG SSESEKPTTPLERAKAFGVGLPIGQNELKIRVRRKGQPAVPATNISIPSQVSPTHKEN DPSASTSSGPISTSSTVTSNSSSSNTIVPSTDDLLARLHDF" assembly_gap 133967..136224 /estimated_length=2258 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(137669..137731,137885..138041, 138127..138241,138290..138414,142895..143022)) /gene="CBG16506" /locus_tag="CBG_16506" /standard_name="CBG16506" /product="Protein CBG16506" /note="Predicted" /db_xref="GOA:A8XPD3" /db_xref="UniProtKB/TrEMBL:A8XPD3" /protein_id="CAP34454.2" /translation="MTMLDPDDLSPGEIVFSADDSAGERSFLAEFFGKKQSFALGSNL TGLIILCIVLTAVVVIFFGCYLMMRFMHKALARDDSKDMLRSNNPYNNVVMHSKRVYE IQAEEGCFNGPPDPLDPSEIDDEHLGDSQNTSVYIEDEEPQKVRKPESGDLRAPRNTE QFDDDPRAMLRKKQKVHKDSVCAFMFKPHIEPKMV" CDS complement(join(153463..153531,155281..155367)) /gene="CBG25921" /locus_tag="CBG_25921" /standard_name="CBG25921" /product="Protein CBG25921" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK53" /protein_id="CAS00283.1" /translation="MPGPHRANFHNYTMLYQHIFSNKTGFSGNRMKDVFCFVRHSIFA TLANDII" CDS 156855..157196 /gene="CBG25922" /locus_tag="CBG_25922" /standard_name="CBG25922" /product="Protein CBG25922" /note="contains similarity to Interpro domain IPR016160 (Aldehyde dehydrogenase, conserved site)" /note="Predicted" /db_xref="GOA:B6IK54" /db_xref="UniProtKB/TrEMBL:B6IK54" /protein_id="CAS00284.1" /translation="MSSNSTASTRSPPETTMAEFIEKHMSLIIAAVIGTIIIGLLAVT GYMYMTKKVEKKKNSTYSRPKSYHDPSPSRSPTAPSQKSSPSIETSGNSVISGTGSLQ TATSETTQSIV" tRNA 157653..157724 /gene="CBG28351" /locus_tag="CBG_28351" /standard_name="CBG28351" /product="RNA transcript CBG28351" /note="C. briggsae predicted tRNA" CDS complement(join(158691..159205,159250..159309, 159495..159519,159567..159623)) /gene="CBG25923" /locus_tag="CBG_25923" /standard_name="CBG25923" /product="Protein CBG25923" /note="Predicted" /db_xref="GOA:B6IK55" /db_xref="UniProtKB/TrEMBL:B6IK55" /protein_id="CAS00285.1" /translation="MTTQHYIEGYRRDLENEFTNSDTSGENQAEDDYYNKAREYFCAK HTGFSSFLFCLQQVTPTPANQQIVPPVPQAPPPPQGPPPLTPEQQQQQAIIAQQQAIM AQLTYTTPSGFIAENPGIIIGGAVLLLSALCFMAACAMSFLTAKSQKPAVPVKRGNQI RKPARHVHKKRKRASSSMDKMEKGQKKKEDGGRKEEKPSNSSYSKSKGKSAKSVDSTS " CDS complement(join(160036..160296,160347..160560, 160608..160825,160876..160984,161033..161121, 161733..161789)) /gene="Cbr-ger-1" /locus_tag="CBG_16511" /standard_name="CBG16511" /product="Protein CBR-GER-1" /note="C. briggsae CBR-GER-1 protein; contains similarity to Pfam domain PF01370 NAD dependent epimerase/dehydratase family contains similarity to Interpro domain IPR001509 (NAD-dependent epimerase/dehydratase)" /note="Predicted" /db_xref="GOA:A8XPD4" /db_xref="InterPro:IPR001509" /db_xref="InterPro:IPR028614" /db_xref="InterPro:IPR036291" /db_xref="UniProtKB/TrEMBL:A8XPD4" /protein_id="CAP34455.1" /translation="MKTILVTGGTGLVGSAIRQVVESTEKRDDEKWVFIGSKDCDLEN VEETRKLFESVKPTHVIHLAAMVGGLFHNLAHNLKFFRKNMAINDNVLALCHEFDVVK CVSCLSTCIFPDKTTYPIDETMVHLGPPHDSNFGYSYAKRMIDVLNKGYAQEHGRKYT SVIPCNVFGPHDNYNLQAGHVLPALIHKAFVAKRDNTSLEVFGSGKPLRQFIYSMDLA RLFVRVVREYEDVEPLILSVGESDEVSIRDAVSAVVKAMEFTGNVEYDTSKADGQFKK TASNEKLLKLFPDFKFTPFEQAIQESVQWFVENYETARK" CDS complement(join(162187..162338,162413..162599, 162660..162755,162801..162827)) /gene="Cbr-ubc-18" /locus_tag="CBG_16512" /standard_name="CBG16512" /product="Protein CBR-UBC-18" /note="C. briggsae CBR-UBC-18 protein; contains similarity to Pfam domain PF00179 Ubiquitin-conjugating enzyme contains similarity to Interpro domain IPR000608 (Ubiquitin-conjugating enzyme, E2)" /note="Predicted" /db_xref="GOA:A8XPD5" /db_xref="InterPro:IPR000608" /db_xref="InterPro:IPR016135" /db_xref="UniProtKB/TrEMBL:A8XPD5" /protein_id="CAP34456.1" /translation="MSATRRLQKELGDLKGCGVRAYENVECEETNLLKWTVLLLPDKE PYNKGAFKVGITFPVDYPFKPPKVAFETKIYHPNVDEEGKFCLPIVTTENWKPATKTE QVMMALLSLINEPEPNHPIRADVAEEFQKDHKKFMKTAEEHTRKNAEKRPE" CDS join(164406..164439,164498..164595,164642..164755, 164803..164946,164990..165160) /gene="CBG16514" /locus_tag="CBG_16514" /standard_name="CBG16514" /product="Protein CBG16514" /note="contains similarity to Pfam domain PF09799 Predicted membrane protein contains similarity to Interpro domain IPR019184 (Uncharacterised protein family, transmembrane-17)" /note="Predicted" /db_xref="GOA:A8XPD6" /db_xref="InterPro:IPR019184" /db_xref="UniProtKB/TrEMBL:A8XPD6" /protein_id="CAP34457.2" /translation="MDNIPQEPFKLEIISSFPLQMSIYFNLCMYPMHLINLCLSLYFK HKLLSLTYQVIAFSASLVHVGSEGVRLGLGFYGNLAENMSALFGFLITTIIIQLPLTV FLAVNGAFLNLPLEYVFYTLIVIFSAFQTVFAIQALMKTAEREVAKYINKIQLETVTA EIEATTASAMKSPKSAKKLVKLQDEK" CDS complement(join(165271..165558,165609..165888, 165934..166068,166114..166235)) /gene="Cbr-lin-37" /locus_tag="CBG_16515" /standard_name="CBG16515" /product="Protein CBR-LIN-37" /note="C. briggsae CBR-LIN-37 protein ;" /note="Predicted" /db_xref="GOA:A8XPD7" /db_xref="InterPro:IPR028226" /db_xref="UniProtKB/TrEMBL:A8XPD7" /protein_id="CAP34458.1" /translation="MSEIDPLAEFLMPESSERNIRNDPLISGGPIPMESPSRKLTSLL SYDPTIPESPDMKFARKRLGNLLTTIKHHPSEIIGVLPEDYSRGDEEASRQGRPPGRP RKMMRHESATSLMDSPRKTMTRDSKIMFELRGKPFEMVAGRYEEEYSLGRAWVKGNMN SEYDPINPTRTDFAPNLAVEYLACREIHRMPRPDRTVPEQPICPTELDQFNDSVDPRY LSELKTEYIRHWKQVKKGWCAHQRLREAPYAKSIALIEKIYQPPEMRTLDHSLGIM" CDS complement(join(167622..167757,167802..167938, 167982..168179,168227..168360,168406..168478)) /gene="CBG16516" /locus_tag="CBG_16516" /standard_name="CBG16516" /product="Protein CBG16516" /note="contains similarity to Pfam domain PF09767 Predicted membrane protein (DUF2053) contains similarity to Interpro domain IPR019164 (Protein of unknown function DUF2053, membrane)" /note="Predicted" /db_xref="GOA:A8XPD8" /db_xref="InterPro:IPR019164" /db_xref="UniProtKB/TrEMBL:A8XPD8" /protein_id="CAP34459.1" /translation="MSFFHFINCIALSFAPYFIIYKYSGINEYSSIWKCATASGGYLL TQLIKMLLLATFFPALDGEGFSILPEFLKSSADIVDVIGLHMLMTNFLAGKGEVRFVV GSLGWGFAHSVSHRLVLLWVGARGSAFTWRWIQTSLDSSADLMVIVSMACLTWMITRS QNKTIITPVLAMCVYSTFVYQSIQHGFSLYGWSLLAFRFVYSIATAVLTIIVYSANRT SVARKNE" CDS 168841..168939 /gene="CBG25924" /locus_tag="CBG_25924" /standard_name="CBG25924" /product="Protein CBG25924" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK56" /protein_id="CAS00286.1" /translation="MSIGSEDDSSKRNSNYRKVERFILNTKYQSFV" CDS complement(join(169141..169352,169400..169616, 169664..169794,169932..170095,170143..170276, 170330..170419,170464..170526)) /gene="CBG16517" /locus_tag="CBG_16517" /standard_name="CBG16517" /product="Protein CBG16517" /note="contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domain IPR000276 (GPCR, rhodopsin-like, 7TM)" /note="Predicted" /db_xref="GOA:A8XPD9" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR017452" /db_xref="InterPro:IPR040435" /db_xref="UniProtKB/TrEMBL:A8XPD9" /protein_id="CAP34460.2" /translation="MYGEQCSSIDGVSDEIPPIFVNCSKYFITGKDEIYADCPIKNGT DPCYLLKELHRSDSFSDYFLAILPIIFSIVAFIFNICYLIAQIKCFRFETMGFKKREA FLMSRSLSIIVANLLFYVVIIVWKVNGFNYTSAMIFILVGSSTFMSVTGTYITLTIVL YLAVAHHISYMTTVTLKHCWLLIALIWFLSTVSSVFVALFGATLFYPDSAPISCSFES CQRPLAISIVVTLSICYGTVIGLYIAMMTRLHRLVRKSSLVQARSNSNSMIAMRRLSL NMITFAVGSIPILVVCIVALANLRELSSLGEGCKSPCKAFLYSYLFIDVEMLASIAAI VW" CDS complement(join(170769..170913,171321..171745, 171793..171923,171970..172133,172180..172403, 172857..172929,172984..172994)) /gene="CBG16518" /locus_tag="CBG_16518" /standard_name="CBG16518" /product="Protein CBG16518" /note="contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domain IPR000276 (GPCR, rhodopsin-like, 7TM)" /note="Predicted" /db_xref="GOA:A8XPE0" /db_xref="InterPro:IPR017452" /db_xref="InterPro:IPR040435" /db_xref="UniProtKB/TrEMBL:A8XPE0" /protein_id="CAP34461.2" /translation="MEKLFHFAVHFLFGNGTMSGEPVPLIFLNCSSIFIFGKDEKYAA CPIENGTDPCYLLREVHRAKEFRTYFLAILPIILSVIACLLNIGYLIAQLKCFSQEKT SFKKRQVFLISRSLSIILANLLFYVVVIVWKANGFMYTSAMIFILIGGINFLSVTGTY IGLTILLYTAIAHQFWYMTKLTLTHCWLIIGLIWILSTASSVCIGLWGATLFYPESAP ISCSFEKCQQPLAIIIVVGLSICYGTVIGLYIAMMARLHRLVRKSSLVQSRSKSNSMT AMKRLGLNMITFAVGSVPILVVCIVALANLRELSSLGEGCKSPCKTFLHSSLFVEVEI LASVAAIVWIIAMIIDPVINILADKKLRGLFSKQITRVSQRLRRASTKSTISTDDQ" CDS complement(join(175835..176130,176175..176398, 176444..176502,176547..176647,176696..176772, 178278..178409,179340..179407)) /gene="CBG16519" /locus_tag="CBG_16519" /standard_name="CBG16519" /product="Protein CBG16519" /note="contains similarity to Pfam domain PF00013 KH domain contains similarity to Interpro domains IPR018111 (K Homology, type 1, subgroup), IPR004087 (K Homology)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XPE1" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR004088" /db_xref="InterPro:IPR036612" /db_xref="UniProtKB/TrEMBL:A8XPE1" /protein_id="CAP34462.2" /translation="MGKLTSCVLIAMVASPFVIKYLRQISQICDSWSLSFSLDRWLTQ QMSISYSEIMEQQTLKILSNHLQYRRLSAFVRMKPELEESKTEEEETTELPQENFIRI PAFAVPAVIGKRGMTLRKLMYDSQADCVLRSYTPEELDIVVDGINPDTEWTEKFETDD WFAEASEAAHNKITYLLVRTSDPRKLQMIRLRIAEIIEVVQKPWKTSEFLVDSHMVGY LVGKGGRNIKSLHDKFTVQIQISDPIPGNPSKCTVTVRGRDLTALKEVEIVMKETVLP KNYNRVPRYDEDTLIENGIYENVEDELKDLRRAADMLAQGFV" assembly_gap 178453..178843 /estimated_length=391 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS 179527..179700 /gene="CBG25925" /locus_tag="CBG_25925" /standard_name="CBG25925" /product="Protein CBG25925" /note="Confirmed by transcript evidence" /db_xref="UniProtKB/TrEMBL:B6IK57" /protein_id="CAS00287.1" /translation="MKRLKSNRHLHKVKKPILKQITEREKRSSRFTENRFKGERGQVQ KQFGKEKRKENSE" CDS complement(join(179816..179936,179983..180506, 180555..181151,181202..181369,181415..181572, 181619..181726,181969..182125,182197..182226)) /gene="CBG16520" /locus_tag="CBG_16520" /standard_name="CBG16520" /product="Protein CBG16520" /note="contains similarity to Pfam domains PF00013 (KH domain) (4), PF09005 (Domain of unknown function (DUF1897)) contains similarity to Interpro domains IPR018111 (K Homology, type 1, subgroup), IPR004087 (K Homology), IPR015096 (Domain of unknown function DUF1897)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:E3CU55" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR004088" /db_xref="InterPro:IPR015096" /db_xref="InterPro:IPR036612" /db_xref="UniProtKB/TrEMBL:E3CU55" /protein_id="CBX33073.1" /translation="MNGVDSNTIQIVGADGGVGILKRPLELDFLDGKWWLWRANSFLI VECNEKCARSENALGRIRRDLIPAKKPSEVADLKMGDSGKVTDIYPVPEKVVGLVIGK GGSEIRLIQQTSGCRVQMDPDHASMNGIRNCTIEGLPDQVAIARQMITQVINRNQSDA PSGAVVGEISEEMMIPTDKIGLVIGKGGETIRTVQEQSGLRTCTVVQDSTSATGQPKP LRMVGTQAAIDTAKALVHNIMNNTQGTTPMHQRSGNQPSGGQYGGYGGQDTQAKGEVI VPRLSAGMIIGKGGEMIKRLAMETGTKIQFKPDGMFLTLNSVFVLRTQCVSVNPNSED RVAVIMGTRDQIYQATERITEIVNRAMKNNGAPGSGTGSVASVMPGQTVFYLHVPSGK CGLVIGKGGENIKQIERETGATCGLAPAAEQKNEEEKVFEIKGTPFQVHHASHLVKIK VGEIAPNTPVPPLQGSGGGYQLQQQQQSMYGAQSGGYQGAAAQSGYIQPQQMQHQPQV QQYGLQQPQQWAPRNGGSAPQQIPGNLYQNAIPQPHAAPAAVMVSQAPADPAPAVNPA TGAPDYSAQWAAYYRSIGLMDQAAMVESQMRRNQSGPGGDVSGAPQGHQQYYPQ" CDS complement(join(183140..183256,183307..183876, 183924..184821,184874..185092,185250..185344, 185560..185835,185890..185988,186196..186528)) /gene="CBG16521" /locus_tag="CBG_16521" /standard_name="CBG16521" /product="Protein CBG16521" /note="contains similarity to Interpro domain IPR006569 (RNA polymerase II, large subunit, CTD)" /note="Predicted" /db_xref="GOA:A8XPE3" /db_xref="InterPro:IPR006569" /db_xref="InterPro:IPR008942" /db_xref="UniProtKB/TrEMBL:A8XPE3" /protein_id="CAP34464.2" /translation="MDPADIEGAARDYRESLAELKNNNKTQINFLTILADDFKGAAKE IVDVIETHLTTCAPSQKLPVMYVCDSILKNVAKPNDYHALFARKIINMFEHVFRQVNF ILESGFLFLGEEGTRSSLYRLRVTWATTGAFMPSKLYALDMKINRLDQAWPISNPNTG RALRTDPQVMVNAPSTSRPSVAPTSSGAPIPPARTVAPVAPPTRVFVNPRFIEAAGAS AIAAQQTTSTTKKTSEKTRCKTVMLFQKASSSVKEKPIKKEPKERKQDPLDKLLPSTA SGSSKSAAPPGSKRKSIPAEHPSAPIRKKNPQPDLDEDLRSINLSNKNNVSQHARDQD FRPKALAPTSVIGSHAFAPAVSRTVVPPTVPPTHFIPLPPQPAHPMPPFSLATQPSTP QTIVSNGMNGGPYHHHSPPQDPAPMATMAQVAPMAPPVQMASSQQSKNVYSSEQTKLD VPANNRIFVDGKAYEVMFVDDTAVIERGGAPHRIYFAGPKRDLLIDGIAHTLEFDKAT PVEILGSTHIVKFGAPSRELYIGGHPFKGQFGGPPIVATINGRRHEIRLTGSAPEVRI EPEPSYHLTHFLHKMREEKKIEIASEKPEKKEDWLSYLKSLQKSGILPPVKNPSPRQQ VSPPPATSNHNYSNGARGGRQNQRGPGGQSRWGAPEQKKPILATPPTPTGNGIEKRNS PPTTITDYNIRVLQVRYDSVVDALITKRSDSCTICGMRLDDSQGKSKEWQDHMDWHVK QNLARHGSNSSAAAIPYRQWYPSTSTWLTPRASEQPSDQNAEKQGSPLPGVDSAGVKT KECSVCGEKFDEYYDDDEEMWRLRDTVSHNGRIVHAACASDADTHFFDNSTYFADAEI KKEEPYEDGVYA" CDS complement(join(188343..188549,188593..188655, 188702..188848)) /gene="CBG16522" /locus_tag="CBG_16522" /standard_name="CBG16522" /product="Protein CBG16522" /note="contains similarity to Pfam domain PF03364 Polyketide cyclase / dehydrase and lipid transport contains similarity to Interpro domain IPR005031 (Streptomyces cyclase/dehydrase)" /note="Predicted" /db_xref="GOA:A8XPE4" /db_xref="InterPro:IPR005031" /db_xref="InterPro:IPR023393" /db_xref="UniProtKB/TrEMBL:A8XPE4" /protein_id="CAP34465.2" /translation="MNMRAHRLQTQSKSQNTVKFEIATLEIGFPPFMEKYTSRVIYIK PSVVHSVVIENDNLFKTLDTTFRFGKGNPSVERSCTLHYDLVFEFESAFHSRIAHLFF DKVVKTMVSAFLHRAEKLYGAPEFPHTPPQVLQYKS" CDS complement(join(189280..189361,189406..189551, 189580..189657)) /gene="CBG16523" /locus_tag="CBG_16523" /standard_name="CBG16523" /product="Protein CBG16523" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPE5" /protein_id="CAP34466.2" /translation="MTATADDLTCLLCGRKWMTVRVIDLLRKINHLSLAHREVGEEHN SQCMLQVDSVIAPNAPKAQRLEKARLIYGDRLTDQFHEADTFLNPEDDLDDEYSYSG" CDS complement(join(190510..190953,190999..191136)) /gene="Cbr-mdt-11" /locus_tag="CBG_16524" /standard_name="CBG16524" /product="Protein CBR-MDT-11" /note="C. briggsae CBR-MDT-11 protein; contains similarity to Pfam domain PF10280 Mediator complex protein contains similarity to Interpro domain IPR019404 (Mediator complex, subunit Med11)" /note="Predicted" /db_xref="GOA:Q612X6" /db_xref="InterPro:IPR019404" /db_xref="UniProtKB/Swiss-Prot:Q612X6" /protein_id="CAP34467.2" /translation="MELNPVDSILSDRIQAIVATEKNIDDMMKCAREIMQDLGKEKQI SKNKMDDNANSFKKLITQVENELSAQMQYLSHVCVGSSHQGSTFGVLQNSLLAQSGLS SLHSELAQILKNIEPPTQEVDEDNEDEEDSGDADMLEETPEDVVAPRTTSSSATTSDG GSGGADDAASSSAPRSQEERRSTEEEEGEQMEN" CDS complement(join(191604..191607,191608..191829, 191907..192055,192156..192245,192664..192800, 193555..193783,193893..194003)) /gene="Cbr-wip-1" /locus_tag="CBG_16525" /standard_name="CBG16525" /product="Protein CBR-WIP-1" /note="C. briggsae CBR-WIP-1 protein; contains similarity to Pfam domain PF02205 WH2 motif contains similarity to Interpro domain IPR003124 (Actin-binding WH2)" /note="Predicted" /db_xref="GOA:A8XPE7" /db_xref="InterPro:IPR003124" /db_xref="UniProtKB/TrEMBL:A8XPE7" /protein_id="CAP34468.1" /translation="MPPPPPPPPPPPPPPPVSSAAPPPASSARNALLGDIQKGMKLKK TVTNDRSAPSVGKVVGSGGAAGSSNGTSGNGNGPAVKPPPVSGGLGGLFANGLPSKPS ENKIRRATTNIGKKPSIVSSSSFSHSSAPPPPPPPPISVPSSKPTPPPPPPAQQKPSS DREQFRTMRPIRPVNDAKPTMIRRSGSSEDIQQTAMTNRMARPSAPPPARPAAPPPPV PTSTPSIAQFSMRQQSPAVSRSNEDAPPPPPRIASKTSTTPASSRAPLPPSSSSVPSM TPAPAPPPPLPQASSPYPGMMSTATVSANVPFHPLNR" CDS join(194857..195247,195336..195640,195852..195873, 196066..196088,196445..196613,197003..197057, 197962..198012,199438..199633,199682..200253, 200302..200907,200985..201183,201324..201500, 201650..202095,202167..202325,202374..202455, 202510..202536) /gene="Cbr-larp-1" /locus_tag="CBG_16526" /standard_name="CBG16526" /product="Protein CBR-LARP-1" /note="C. briggsae CBR-LARP-1 protein; contains similarity to Pfam domain PF05383 La domain contains similarity to Interpro domains IPR006607 (Protein of unknown function DM15), IPR006630 (RNA-binding protein Lupus La)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XPE8" /db_xref="InterPro:IPR006607" /db_xref="InterPro:IPR006630" /db_xref="InterPro:IPR036388" /db_xref="InterPro:IPR036390" /db_xref="UniProtKB/TrEMBL:A8XPE8" /protein_id="CAP34469.2" /translation="MAEKQPMLSFAKVVSGQAEEGLSQSQQPPQKQSNTSPSTQNEQI PTEKQGNSQSTRRDKENSSGRQSDRPRGEGKGKRRNNKKGERKPRGEAKTEKSVEKVV TEEAKPVEVPVVLEPAPLPAINAWFKNKEEAAAAADREGQNVDPAALPVASPIQKAQK SVAPVPEKKKAIESVPAIKEKPKNREAKKEPWKTSDAGTDSSNTETVTVAAPQEWPSL AKSELNGHVSPSNSSEIKNFCSFRDITVNDDNNEGGSSSQHKTTGKTTKNSWKKVEIS VDYGSKGKGASRGNGEKGTRRTANDETARRRSGEEDSASGDEQQYWSRNKDNKSPVNE MSNDRVVDSGSNGIYYQQGGTHGWKKKVNNKSGSDLPTPPNSTSPQHSEESSPEHVSK DKSSLNMNGNARNAPPVNRTGNSTVAPKTGDYWHKNGGERKDDKSQPKAYYQRNDRYQ ARANPHAPPKLTPAQRKERGPLPRWEDIEAGEDNFDYMTLMEAQYSQYYGAPQQFEHQ LDPHQASILIQQAQQHMASFAPFRPPMPMISPNLMSPPMDRDGGIPSPMSNGEPINTS IPFAPIYHPPAPPRPVTDDTLKEYVRKQIEYYFSEDNLQKDFFLRRKMSPEGYLPVAL IASFPRVRALTEDFSLIGEALKDSTKVEVSSDNVQIRARENPTAWPLMPPVSGAADSL PGPSTQAPNQFKQNGPLAQSAQTSVPTEHQTQNQASSSQTQQPQQQEQWEEVKSRKGK GKGRLASGSQSANDSKRQSQKSSQQSASDQPDLDFQFDNEISQTPKRVEKSKKTLLSA MDSEEIGDDVISKLIIMTPSRRTLDRTGDFSTRSQNQVEFNEEVEIGLRRYEEELWTV PLEKEAPTSKVSTISAEQFHQMRGDTDSKQNPEEPPEIPLPTGTQPTPDSVWTKKAKE RAAASVTVPKSPMQRRESQEQKMNRFYPVSKPAATLDAKSPRKKKTRHSEKPPVEMPV AWVLGREEALPAAPIGIAASSSQVPANHPSVSLLQEDRFVQNVYSTWRLSCLKQRKSL GYDCAEMNTLYRFWSFFLRDNFNRNMYEEFRKLALEDAEIGSRYGIEALFRFYSYGLE KKFRPEIYKNFMKDCTTDVQKGELYGLEKLFAFLQRSKIAKQLVVDDFLTNELNKYKS TDDFRNLPLSTKK" CDS join(203754..203835,203879..203997,204070..204230, 204278..204394,205270..205340,205388..205788) /gene="CBG16527" /locus_tag="CBG_16527" /standard_name="CBG16527" /product="Protein CBG16527" /note="Predicted" /db_xref="GOA:A8XPE9" /db_xref="InterPro:IPR026620" /db_xref="UniProtKB/TrEMBL:A8XPE9" /protein_id="CAP34470.2" /translation="MTSRFGRLKQIYMGFIPIYPLGYVILHGFRGDQIWAKPYLDRSS MEPSGHLKELVEQEIDKMEKLKKFQVVLTDEMEPKVYGALFLSSGAELQFPLRMTLDD VETARRIGANLEVDLGLSKHRRKVEVNSETGDELIARLMLSDAAKHFIVQRQLQIANS GEYFCAPILAWLGLSTMGYGVLNTTAMIVGPYIATATAVVFTIAAFSEFSRRFESFKI TQADQDTISRGDEYTIGAIDYLESTMKLNRLYRKVSYNDFRIIRPSFQVLGEEGERKI ARNGDLVDDLVKHSTRIKEIRKLRKQMKQKQSIHSEELDD" assembly_gap 204457..204927 /estimated_length=471 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(205964..206127,206176..206418,206468..206573, 206614..206739,206789..206892,207018..207222, 207272..207302,207790..207797,207802..208018, 208068..208167,208211..208291,208339..208615, 208664..208768,208815..208993,209040..209130) /gene="CBG16528" /locus_tag="CBG_16528" /standard_name="CBG16528" /product="Protein CBG16528" /note="contains similarity to Pfam domain PF07857 CEO family (DUF1632) contains similarity to Interpro domain IPR012435 (Protein of unknown function DUF1632, TMEM144)" /note="Predicted" /db_xref="GOA:A8XPF0" /db_xref="InterPro:IPR010651" /db_xref="InterPro:IPR012435" /db_xref="UniProtKB/TrEMBL:A8XPF0" /protein_id="CAP34471.1" /translation="MGSTYAEWNQKATLWLQTKMGRRARIGLLAATVVGYPIGSILIN GPFVNLTFPRRYSVEPLPGHLPSIADEEYGRFLERESRVPKDAVVSVHIQNNLATSDE TVASGSLGVRTGLNLAVPMYSKFSNANEALEFFKNQYQDGFDFMGERVPIRWDSEIAE EFADCYALSDNARRFVFLRDLYAYDGYASLAQRSISWATWTTFSSIFTYWIHNSSRLL SGSAVSFVVAYPLLLGAAWYANKQWHLLYRFMTDIHADAEAARASFEHAEGGKEYYWK MLKRNRIMRDINPSLWDRVTATGDIRGIATPIITRYDHLKDVNEEDDELKGFIMSVVV GLSACALSSILFGSMFVPVKKCQSGNGIFVQWLMSAAILLVGVAVYATQGFPEFEPLA MLGGMFWALGNLTAVPIMNTIGIGMGMLVWGTTNCVAGWAAGRFGLFGINATIPTFPI LNYFGLVMVIVGGFLFSQIRPNESQSSSERSPLMVAPDDDLADDLVGGADDSDVVVPR GGAVPTLLGAHRNQKRILAITVSLVAGVFYGVTFVPVIYIQDHPELYPLAPKTGLGLV FSHYMGIFCTASAFMIGYVIVSRNNPFASSRLIGPSLTAGSMWGIAQSSWFVANDNLS QAVSFPIISMVPGVIAALWSVFYFRDISGLRNLRLLSIAVAITLLGAICVGVSK" CDS complement(join(209414..209681,209729..209791, 209835..209921,209967..210127,210177..210398, 210447..210559,210605..210751,210801..210963, 211005..211156,211202..211361)) /gene="CBG16529" /locus_tag="CBG_16529" /standard_name="CBG16529" /product="Protein CBG16529" /note="contains similarity to Pfam domain PF11704 Vesicle coat protein involved in Golgi to plasma membrane transport contains similarity to Interpro domain IPR021713 (Folliculin)" /note="Predicted" /db_xref="GOA:A8XPF1" /db_xref="InterPro:IPR037520" /db_xref="InterPro:IPR037521" /db_xref="UniProtKB/TrEMBL:A8XPF1" /protein_id="CAP34472.1" /translation="MISFEDFLLRPSKVVDPFNRFVAKIDPFLTLVEFCQVIGPRPLA VVSQQPNDKIRGVDINEMAIWLMSSDTVPGTMIVLENNQTGIHAAAYYFNLYDMRARA FQRNLCIAYLCSEKPTKELLNHFSTTMKTLVSPVLICNRRLFIRHVTDIVKFSDSVDE TTLKQYYTLNGDSQKLTDASRFNIVFEQTRLLKSKFLTKRFQEMAFEDDICCGHNTEN MGEAEDIICSFRVPSIPLSPIDTLTPCAYESIIPKLRQLCSELNQANSLSSTGALFCG LRPIATVAPITTSSHSWDLDSEHLNSNEKGEETLKAITGHLGDVLFPLLCGEDMVICG AEQRRSTVEDMLVKIGKVIPKERANLVEQDVQMEKDPNKIGKGLGGLLCNRSETGKLA RWRTVLDMNRCILKTFSYDGVLLSGLNKKRKFPSDRSLVMFIIAYLTNICQLAYICRY LFIRSPNSIDMVMGDQQKISFDDERILICLLMGIDFEKFNRLKQSSNKDGRGAKPSRT INL" CDS complement(join(212615..212660,213117..213288, 213343..213394)) /gene="CBG25926" /locus_tag="CBG_25926" /standard_name="CBG25926" /product="Protein CBG25926" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK58" /protein_id="CAS00288.1" /translation="MEHEEKQKSVPRGDKRRRDPGSEHLGRKGYCRIETQRREELIDS EEEKGEDEEHVITPLGGKKKEKKRGEENLVSRVLLLLHLFHIIMQ" CDS join(213911..214027,214114..214578,214622..214735, 214782..214913,216060..216842,216891..217136, 217190..217567,217615..217989,218039..218412, 218459..218709,218753..218942,218999..219187, 219234..220530,220585..221068,221112..221254) /gene="CBG16531" /locus_tag="CBG_16531" /standard_name="CBG16531" /product="Protein CBG16531" /note="contains similarity to Pfam domain PF12371 Protein of unknown function (DUF3651) contains similarity to Interpro domain IPR022113 (Protein of unknown function DUF3651, TMEM131)" /note="Predicted" /db_xref="InterPro:IPR022113" /db_xref="InterPro:IPR039877" /db_xref="UniProtKB/TrEMBL:A8XPF2" /protein_id="CAP34473.2" /translation="MLPSLRRVSSRFKTSISSVCVSILLIFSLLVTSTLADQQAWPLP EEVSASLLHEIPVLHTAFVQIGEELHYLNQPIRPENVHHLPVFDFVSDGGSGDASTLK NKKKKKKTNTYNVMKMAGKGKLPMELDPPMMDFGQKLVFSFQKQKLFKNVFSSVGTAQ KRKIYIRNMKAEPIFLDAIVVSSIEFQASYFEEYKLEPHGITSLEVVFLPREIGKRST VVHFYTSVGLFTYKMQGNCVSNPYRISPFTGYRLPMNSSVSKPISIFNPYAYTMRITE VSSSGGNGHIELPHEVDSILAGEPPQYWDIRPYQTKQIATLVLVGGTSENSTVFVRVA SEIIYHSEDRRPLTDIYLTVPIEVLKRRGVYATDEILDFGIIRQGVKSEAKVFSVAQY QIGGRLEFETLYVEKGDHTAIYMEFASHPPIVVHPPNKGSITLGPKSDLVKVYLEGNR VQMSNQQYMKHISGHIIAVSRGGNYNVSIPYRADVFRGNLVSIGNDLSIQEDLRPPHQ RIIRLENHLPFDVSIYNISLSPDLVSHFSIRLIDRTALIRSGHISPVFVLKYNKKLPP PFDNSTIFVHTNVSTFNLSLSTYAGKMAVEMTSVDKNSFDFGFVERNDTRTIRFVVWN HNRAEMRLKNLVVPDRNAYRLYEVGVKSIGNFSDVRNDERLEYVEMADVDIPPMKGKI FDLELKVPYAGEVRNGNIIFETDLESKVFAVTYQVSSGSLQSIPDEVSFGQTFPSKLV YRTLQVFNSFDEDMTVTRMTTLNEDPRFFFEGFDPHNPPVLRSGRLTNLGRVMFSPSA PCEHEYCYLGLPLGSTDGAWFTHGLGLPSNLPEIDSYLYKQLRRKYDALVKSRKHHVN TTIILDTDKAKNIKIKTSAELVWPRLLTRNSIHFPLTALGNFTIVNLTLANPTNVPVA IQVIPLVIYPDAESLVELMRPHLASDLTDHVEMNETLMFSLRDTELFTLKPDSPVPKL REAFEHHLNHEMPRYNNEINIPRFTLSMILKPHMKVRLRLGFLPSDYTLRSSLLLIRN NLTALEPVVMYGKGARIGVKVEGAEARSKKPLLFEIRHDHLTDCNNPKRLMHKLHSTL TVRRPFQVMNTGEVQFTVTNMSINGVPCENRGFRILNCYPFRLQPNETYALDIAYTPD FLTTTNEADLQLYMHMNGSAWLFPLAATVPGDMLAKCHQALPRPPFENIMYYSCVTAL IFCLVCVLACAYLEGDRAIACAIRQQFAIPRHVFDLNNLNKTSSSAQPTPTSSTSPTS PETQTTKKTSENSTPSALRASSDAWLVKKWGYNLANWVVKCVHKVWRWSLFWRKDKAV GDKSLKTTKPTKKKNPVTMQKVEEFRQMLEYVGQQKKKNAAGINTEFDEVEEEALAEM WAQRKDSGVSSVSQKATPPPVEEPVLSKSQKKKKRAAQQKDNNNLEPVAPAAQNESSS RAESTKTTPGPSPKPKGSNQKKKNVSTPQTKSQPVHEPVVSSSVKPIPAETPKTPSPP KRAPSKTPSRAQPSPAPSTTTMQRPIAPSPELLYNEQSNPASPDLFYRQFLSSMGMPL EETFWDSPAAQAAMPYLNMWNYGGPLSVEQMEDLIRQASGQAPTDTSNTTTTTPSEEA MEWNQGQIEEEEEESVAGEDEPDWINENLNVDDAEADFSSMAAASKDLFHDEDVDELH LRRQRSPSQASSTLSRKVSWFSERILHYVFYFQLENSPQKMGGRRLTIGSEKKNNPPT SEFTRTPGNPNRFTSTIQNPPPYSSGSIWGDSSSSNLWGSSSSQLPSTSSASSQPSNV VHDPLSLSHLGINEAESSVPFGNTMFSGPEFNLWSSSSLFYQHPSQQQQQNDDNYKNK KNE" CDS complement(join(221379..221552,221603..221699, 221746..221861,221910..222114,222406..222534, 222579..222687,222742..222814,222864..222936, 222981..223122,223172..223292,223340..223611, 223656..223752,226022..226144,226194..226428, 226476..226510)) /gene="CBG16532" /locus_tag="CBG_16532" /standard_name="CBG16532" /product="Protein CBG16532" /note="Predicted" /db_xref="GOA:A8XPF3" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:A8XPF3" /protein_id="CAP34474.1" /translation="MSSKSRSSSKEKKSSSKKEKKEKSSKKESSKKEKKVKKPKTPEP EYEDDFEQYEEDFEDFNDDRSKEKETPTAEEAAREEKPLIIIETDETPFEGNLLQRLA TSHMRRTEIAPQKQIPKASSHTQISFQSTIENKPYSYHNEEERQTQEQRAFGRLNKLR GLISIEVTKSQVFTDISSNIFEPLSSTPSNKAHALTQTGKECNTEEVQTEKGEMEDEE TQCPHSESTRIENGLEKERTSSDRARLKKFFFAATQTIREILISDDKSAEEDETSEKS ISKFSRGYNPFRLYQVVTKCKATCIKKGESDSVLIAYEIFESPAPDLINKSLIAEFYV HKRRPPKRLFVVESVVSAMELSQASQTLYVCLMDGTFCAFDLSITDAFFEDTLPWVDS DTDIALRRPTFDSSFLATTITDATPLVGITVSKSNIGEDITTIDSSGTISYWVANRIE TNELRVLLTAVIRPHPVLKRHSSSFAVSAFCHTTNPLRFFIGTDTGMMYSVYKSDTSQ AIPKIFKTEKEKYGEVAVIAANPTDNTVLLIGFSNGSISVYRTSQTSAIVNLPTADLS TRVTMISWSLTNPSGFYTIHNGNSISFWDLGFKLSSITTDSRNDSNQVLACDTWLSES AKIGYMAFGLSNGDSEVHVLEDPARKNQNETILDVLRRIKNL" CDS complement(join(226883..226987,227029..227551, 227768..228051,228098..228826,228872..229144, 229186..229353,229403..229583,229625..230039, 230083..232240,232285..232485,232533..233195, 233241..233633,233676..233971,234016..234168, 234214..234313)) /gene="Cbr-rod-1" /locus_tag="CBG_16533" /standard_name="CBG16533" /product="Protein CBR-ROD-1" /note="C. briggsae CBR-ROD-1 protein ;" /note="Predicted" /db_xref="InterPro:IPR019527" /db_xref="UniProtKB/TrEMBL:A8XPF4" /protein_id="CAP34475.2" /translation="MGRLGKTNQTDNIDANTSTVGLYDVCTVARIAPLLDENNADKSS PNWKLKPKSNERFLALASSSDLAVFTLGEKTEYSFHTGLEGAVTEFEILGSSAFFVGV IEKRRVVILSLEKQELYFNEAAPHDIDFVFCNPTPSVCYLTFGSRSGDWSTVLLQGDV AFPKENNRVENWNTDQIQEYFQQAMQKTTHMSIGIENVLGDITAISNGPLQSYASVHN SQGLHWCGLAESQFSVIGREKKFIRVRDGGRFSLHLDTEGWIHTFDQLTFSFWDEFDL KMSEKDRILDFVVIDKNEVEVPKLFAIIAVLEKNGSPQMIIYDRTKRENCFSLSSAIS TTLFAYGGSDRVLMAVEEVENEDPAKLEQSRIVVRQVSQSRPEMRFESLLKNNRFEEA EKFAITFKLDVQKVYKGHVTYLMDSCDQDEESFDVLMKTMGQILDHNMVAETYFTLVG MSRRCDRIRTYLTHAKKRRISDMDVLKMIESLCYIWGTYRIITGPGESDNAQSNETIW ELFVEALHGGNPWVEMYNEFITGAKFTQARVIFSRHGKMIIDYLCSEENDVGSRLEAL FRMFTDAISANIKNWSNVVEHVTMDIFPTCLLIAEHLVPCLENLILTIIPLLEYRDSS NWPDNAIKAASSYDTMTKLLVSNGNTPSNQCVLMLYGSKLSSSVDVGSSSIVRVKKMY YDLIELKRLKEVYECSISFTILQNLTSEGICHKILQNALTNPNTTHAKIEKFVVPFMI ERHLDQEQTIVNYIQMMSGASVSKANMFGWEKQCVQLCASLRDETRRCCSIISIASNA KIPWPTELNEAVEKILASRTLLRAEIEEMQMVCKRTELYKMLSSYGYSRHDIDLLTSN DSNMDVIMTIRCMLAQREKTSRFVDIIKLLDLLRAMQGCKNINSAKIEYIQAFAVIHM ICHEDVTTSIINYIDSLGDRERLKTIRLVFSFIESVANTPAIGENVHEREKTLGVGEE LLSYYVCRDNEFNDPERKLKDDLVLLREVQQNETKAVLLSDFHDEDWQRQFLEKLIQL DTTMSVVTTMNVKFQNVFKLFQKLNKCNYMGIPTEYLLELILTKAIAESDTDRVMDSL ISYVEFISPWTDATRDMLEPIVQALSWITFRIPELLPHETEVARADYVSPVFRQDLNY FISIQIAFVVKRLGRVVRETIRRFPFDIISDDLDYLLQLEAFFNLGEHIIKQSLRGQE NENDKQELFRAGETATLPIGTSESSTDISSQSKIRLFEFKKPLGTYDFSCEPALFEGV QGVIALSQVAPSVARPYESDITPEDANDFRGNWEQLNMFLAMHSQDLLDVSARVFAGS LNCWAGEYSQSVLDIEQPVLSIVERMLQQKKFDFWHAVTLLGGIPADRLDKAVLELQR KPGLRSSTKALLQYLQLAFVISILSRNMEKIPQIISFYEQKFLVKKLAEEGIRVSINT DFVDKVLQQAVDLRQPLSPLRLHDYVKKYVEILSRNAKIKVGEYMVRYATLLIRKASA AGRLTDEEIRKEEIEKFIELARLSLRIAVEENASCICNYLHCLLYIVCPYNYEVIQFI VSSFGQYASEGSEITFEKNLKSVIIMDFLWTYRRTNHISNEESIWFTKREGILVKDEK EYEKSGRFLEPFGHSQRLVYEDDGSQMNDFSGSDSSYQPDAMVYERNSVIISDMPKTA MLHLPFHAFLLRKREDADETVRKIVIAELSIFNVPIWQAFLREVSWLTKHFSRSQLLS CAIFAHANKYAIFGKSLPEGERKTIHHLLNSASQRGTVVSTIALLFKKIILSDVKIEL LQMGVDISERWTADLTGEEREDMEEQSARLKDGIAKFFTELELKKNGIYNERTADNIE NVRELCSLIYDHMISWDNSTDVAKKCRVVERIAKANDLNLVSLHEQLVFAWIEDTEST APLCHVDMNESIGGTSFTDQKEEQDAPNEVRIPIFDPALDKIVVLCQRLDKKRLMRRL GNIILKGGRKAVGGFTAVTRAACIILRSFTDKDVSDFAADLDLMRICGILETQLNERL FDKAEMKCDEKTDKMQLIKTLLQCPSRTQPMTALIACLIIDHEFKDPKSIDQVMARLQ ITKQWDTLRGLLNYVSSNQMDSLIRSFPLLWFRVYENALFEINGGPIMNPNWSYEQCV MLRKWTLWAMSSNVEGGRLPNIARYLRELNCPVSASIMSVLSSWTIEKMDDVDNTKLD ESRDLGLGWNLEGDVASANCSNA" CDS join(237419..237460,237484..238100,238150..238621, 238671..240551,240562..240750,240788..241368, 241418..241673) /gene="Cbr-hcp-2" /locus_tag="CBG_16534" /standard_name="CBG16534" /product="Protein CBR-HCP-2" /note="C. briggsae CBR-HCP-2 protein ;" /note="Predicted" /db_xref="GOA:A8XPF5" /db_xref="UniProtKB/TrEMBL:A8XPF5" /protein_id="CAP34476.2" /translation="MEQSFNDENKQQGTKYNFFFQKRQQIESPFSAATPKSRLGKEPK RLFSLSNANLADANLEQTCIESRPSSAAPTDSSFSTTVASNLSYLDNAADPNLEQTEI YAAGTSANSTNLSMVQEGDETDADITLANSFNEKVFVQKGIASPVLQTTPTGPSASAS IVKEPRIPISPIPMGDLTPTAPTALASSRIDRGLETIDTHSIESMMSPVGHLKSQIDY SLHEFEILEQKVEHEEDIKKLQEKIEKMRERHREELKQLNESRVFEEQMLMQQMDAAA KKAKSDKDAAKEREKELENLVQELKSKMTEPSELKQQLEELSGRVEYLTEKLQQTATA SEHRTRELESNNVEIHLQLTNAKSEVEELKQKLIEVSVRAEEEAGRVSNNEPSSTEII DELKKEHEEIRSMLMEEIRRLESENSNFQLRNPTENIENQRLLSEKLSLEQQLEAKIN YINEELKKSEMFNAHIQELTAALEVSQTNSETLKQSLEEKEAKIQALIDEMSSLQKST DGVAQLRIDLESANSKTQELTDSLKNSQDVIEENTEVILKLKNTAEASQTEVSQLTVS LQTVTSQLEEARQRLEFSEFKISSLQTELEEVRQECLLDGESAEAKIKILEESAEDSQ SIRIQLKEAETRIKELEAAKQALEEIGQDSVTKNDDIRDQYQEKLEEAERQIQELQTA LDTVKEETDSVSQREEVAQNKINELEASIEVLGKAAETNEMLRSEIDSASKKIQDLEL QLDSAQKSSELSGSELEKKLESSQGAIHELKSNIETLHAELEAAKQNSHELEILKESM KALQEENVISQETLRSQLDVAIQEKQTNQDNVNLLEVKVQELEGSLMSLKQSCAEQVD ELTTELEATRQKTADLESKCQELVSVHETEISEFVARIGANGQKESELSSLQSKISEL NAQLDSARDELDKTRIVNEKNVEELKTQFNDYQKETDQQKQQMEGIMAAMNVKEAEVI LSDISIFILVFSARSSICAVRRKSWTIVVDGRTSQKSDSEAKIEELNARIEELQAGVN FAQKTLEEAEEMKKEKDCKLQQSQEEMEKLRQLVEQEKLQKAVFQQEIQQINEKLDVA EQALSQKENLVVTLESHIETISHQFEERLKESNERIKEMTEWKSQAMQVGTMAESLSL LQQQIKELSASLQESNRRVIEVEENAHHDITIMQDEKNEQSAALEEAKAQIAMLEDQL KSARKEIELLGKECDQFDDEEKVYKETISELQAEIKQLKGVKTPPKALGLIQQARLGV KPLSRESSRIEQPVIEEGYEDAQDSFQSPAQQNHQKSFNQTTRQTGSLSFTAGATMLH PDDQAVGRSAIETPSKKNRSNCQQQ" CDS complement(join(241951..242127,242172..242284, 242334..242424,242493..242594,246022..246177)) /gene="CBG16535" /locus_tag="CBG_16535" /standard_name="CBG16535" /product="Protein CBG16535" /note="Predicted" /db_xref="GOA:A8XPF6" /db_xref="UniProtKB/TrEMBL:A8XPF6" /protein_id="CAP34477.1" /translation="MLRWFHVEDENTFLFGIRFRNRKLVTFFAFLQLIVASVSFAQHI YSVAHFNKIFYCSFNETRSNTGHFLSHDVIIFDFGLFHELINVQECIANYLDGGYMRC LWCFTQMIALALTIWTTLCIPKPHPLLLWPMLIIQNAYCFGLVILTIATADKLLVALF HPVNAHLNLMILYFGVGTCINHFFDYILWHYYWYEEFQYIGRTGKHVIPFWV" CDS complement(join(255898..256001,256050..256194)) /gene="CBG16537" /locus_tag="CBG_16537" /standard_name="CBG16537" /product="Protein CBG16537" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPF7" /protein_id="CAP34478.1" /translation="MATQSAVSATSVQQGVPSASVAASKVPTQGGLWNSACQLFSLTP KAGKDSFQFLTSPQRSKPAATVNADNFYMYACGSINMP" CDS complement(join(258423..258509,258561..258696, 258753..258766)) /gene="CBG16538" /locus_tag="CBG_16538" /standard_name="CBG16538" /product="Protein CBG16538" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPF8" /protein_id="CAP34479.2" /translation="MKIARVGADECPDLTSVVANVFLADMKSFTETVDLRINTDAIIC NEKIDLIVLKAGASITVNRIIQTSGSATSTTANS" CDS complement(join(259450..259608,259654..259799, 259844..259916)) /gene="Cbr-kbp-1" /locus_tag="CBG_16539" /standard_name="CBG16539" /product="Protein CBR-KBP-1" /note="C. briggsae CBR-KBP-1 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPF9" /protein_id="CAP34480.2" /translation="METKSPHNMSTNSWSSLPKAERIKTILKLQETNNQMKLDIDNDQ KTLAELRQTIPDECLGLFEKEKKNLLNHYLTAELLPHLSEQGLNADEIQRMGNTITAR ANAQVADREETKNIIQETEEAST" CDS join(260211..260262,260315..260529,260579..260782, 260797..261125,261178..261273,261319..261559, 261610..261708,261755..261877,261927..262164, 262211..262380,262427..262522,262570..262687, 262732..262841,262890..263244,263292..263734, 263784..263891) /gene="CBG16540" /locus_tag="CBG_16540" /standard_name="CBG16540" /product="Protein CBG16540" /note="contains similarity to Pfam domain PF09797 N-acetyltransferase B complex (NatB) non catalytic subunit contains similarity to Interpro domain IPR019183 (N-acetyltransferase B complex, non-catalytic subunit)" /note="Predicted" /db_xref="GOA:A8XPG0" /db_xref="InterPro:IPR011990" /db_xref="InterPro:IPR019183" /db_xref="UniProtKB/TrEMBL:A8XPG0" /protein_id="CAP34481.2" /translation="MSKAELAVLERRLRPIYDSLDSHNYKKALTECDKVLKKHPATVA AKVLKALGLIRLDRLAEAMDILDVLDVKGARHDELTLQAFVHCYRDSNQHKRVIYLYE RAIEVDPSEQNMTQLFMAYSREKMYKEQQKIAMRLFKDVGSTTYYYWSVMSLFLQLKT SFNQILQAREDKELGKKMLLPLAEKMCKTQIEKTNYTEGSSAELELELLILDGQEKWK ECAEFVDKPRAIGLPVAPHNLVEKGMEYYMKDGQYNLAYELAVGVVETMPDNWNLWRI LVASTIRIIEKMALSQNKEYQEGALLLVEKLSELIEKVQQKSEFKIRGPYLASFLTLK VFGESAAKVPGLEDLTPHFGDIVERMLVYVRNFYKKPICFTDLHMYFGELNEEQKQQF LKGLTSWMNDISSEEQVEGDESKVWAILLTERCRRALGDYEKKTSEDHRSLFQQFIAQ IAAKGRSEHAQGVLCNFAISHLWDAYRKESELLCLFIDIRTLAFSDDLEKFYEMILLL EFVATSNKTDPLCKLALVRAYSSLCITGRITALWKVLDIKSVQNDTLGYLTFPVYETS GRFNLAIINCSQLSIMYDQSEKEIQDSIAQAYRQGKFTAIPPMTAASLKLRLSVQKTA AEVMNRYLSSLFVLEDLDQTTVTLWGDDDPIGETRIDWSKLVDNRDFSVLPYTETPEY EKLLDDMKKRTFQELIDISELRSTMCRALGAVGRVTMDNMDPRLARVQLKMTVIEFKK HLEYCCKEYPSFLIPSKLAQSPAPQHLSQWVHSGGPQMVLEYLEAAVKLVEILDSGEH PDVELVGTRTEMAKKLIKLIEIQPKRNENEPLPPFWIVDPIIKSSRALQTIAAIQIVL QFIEKLVMKLVKNVPTTAPGFGKPKGKKEKKVAEEVFILEILKSRASSFQAVAKALEE CKAVIFLEHIRSKHVELRYAGNFLHTHFRQMMAYEDKNVPEKVGEGLGKAQVVLQEMA PTIESRLQVSFLNAFEDMHTTIKSRF" CDS complement(264811..264858) /gene="CBG25927" /locus_tag="CBG_25927" /standard_name="CBG25927" /product="Protein CBG25927" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK59" /protein_id="CAS00289.1" /translation="MKNNNLIPICLHFQN" CDS join(265095..265233,265774..265865,265986..266060, 266107..266195,266242..266309,266353..266432, 266480..266575,266622..266680,266729..266981, 270641..270721,270918..270983) /gene="Cbr-sma-3" /locus_tag="CBG_16541" /standard_name="CBG16541" /product="Protein CBR-SMA-3" /note="C. briggsae CBR-SMA-3 protein; contains similarity to Pfam domains PF03165 (MH1 domain) , PF03166 (MH2 domain) (2)contains similarity to Interpro domains IPR001132 (SMAD domain, Dwarfin-type), IPR013790 (Dwarfin), IPR003619 (MAD homology 1, Dwarfin-type)" /note="Predicted" /db_xref="GOA:A8XPG1" /db_xref="InterPro:IPR001132" /db_xref="InterPro:IPR003619" /db_xref="InterPro:IPR008984" /db_xref="InterPro:IPR013019" /db_xref="InterPro:IPR013790" /db_xref="InterPro:IPR017855" /db_xref="InterPro:IPR036578" /db_xref="UniProtKB/TrEMBL:A8XPG1" /protein_id="CAP34482.2" /translation="MNGLLHMHGPAVKKLLGWKIGEDEEKWCEKAVEALVKKLKKKNN GCGTLEDLECVLANPTPNSRCITIPKSLDGRLQVSHKKGLPHVIYCRVWRWPDINTQH ELRSIETCSYPYESSSKTMYICINPYHYQRLTIPKGLNSSMPSPQPAPSPSNTIWQSG SSTASCASSPSPSVFSEDGELQAHQRPPPFRHPKSWAQITYFELNSRVGEVFKLVNQS ITVDGYTDPSNSDTRICLGQLTNVNRNTTVENTRMHIGKGIQLDNKEGQMHIMITNNS DMPVFVQSKNTNLMMNMPLGKVNRIPPHSQLCAFEFNLFFQGWGEDYPRQDVTSTPCW LELRLNVPLAYIDQKMKQTPRVNLVEPNSVT" CDS join(271993..272038,272083..272174,272226..272560, 272610..272772) /gene="Cbr-clec-158" /locus_tag="CBG_16543" /standard_name="CBG16543" /product="Protein CBR-CLEC-158" /note="C. briggsae CBR-CLEC-158 protein ;" /note="Predicted" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="UniProtKB/TrEMBL:A8XPG2" /protein_id="CAP34483.1" /translation="MQKLLISAFIVAVVAGQCSLKCPDGYLSFKRTPTPQNSMTSLWC VKTIFPESTINVTSAKALCAQENSVLTTFENDDERHQLSSALSAGLAAKKMSLGQMFV DGHRLPQCQTQDRTILRASPCLDPTTGFTTDDKHTDNTFMFQNWADTEPSASFWQTDV ESCIALGIFQFEKRNKKLNDIQCDYDKSPANAKALDMWNVGVACGRLPEFQ" CDS join(274822..275235,275317..275501,275548..275739, 275784..275955,276390..276579,276629..276855, 276908..277273,277285..277539,277584..277787, 277837..277941) /gene="Cbr-zak-1" /locus_tag="CBG_16544" /standard_name="CBG16544" /product="Protein CBR-ZAK-1" /note="C. briggsae CBR-ZAK-1 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF07647 (SAM domain (Sterile alpha motif)) , PF09235 (Ste50p, sterile alpha motif) , PF00536 (SAM domain (Sterile alpha motif)) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR021129 (Sterile alpha motif, type 1), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR015316 (Sterile alpha motif, Ste50p), IPR001660 (Sterile alpha motif domain), IPR011510 (Sterile alpha motif, type 2), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8XPG3" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR001660" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR013761" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR032938" /db_xref="UniProtKB/TrEMBL:A8XPG3" /protein_id="CAP34484.2" /translation="MSLPTSEESTSSSSGYEQRALFPDIQRDDIQVGDHIGVGSFGAV FSGTWTLPDASQRIIALKKVFVLEKEAEILSKIRHKNIIQFYGICKATGNDYFIVTEY AERGSLYDFIHSEESHNLATASGLNCFDVVVKWASQIANGIQYLHYDAVDTIIHRDLK SKNVVLDKNLVCKICDFGTSKDLTHSCTAPSWGGTAAWMSPEMILQSEGLTTATDVWS YGVVLWEILSREVPYKDYSEFRIFTLITQSGITLAIPPTCPAPLKQLMNNCWKMTPKD RANMRQIQGELNRLQGNQKVMDECEKFMELEDWKTEIAKQEKNVENIQKMRKDLEKRR EQLEIREKALKNRMKVEQAVLDSARHPPEDVHQWSEHHTSHWVETVLARVANDKKFLD RVNAAVFRNRITGARLLEMTQNDLEHLGVQKVGSRIELMKMIRKLKDTQKVLHAFPTL EQAKQIEMSLKTEKESAGHLANGVDIVIIVGMYVRKMSPTLRKFKFYADSDWIDETDI PAKSKSKHASALIKTVCFSVLDDNTKVVLNDVSISILQIRFQKPINEPACSISSGMTT NPDWITVDTEDDIKIKRLFCGYCGENHFNNFFSKFIFQTQPRNTEIVELVTSLEESKI LEERHVHLRLRRSSSSASVSTPSPSVVPPVYQPFGHLTNGFHHTTSSPQLRGFWHRKQ AGMNRHGLTETELSSLQEHLRTPSPDKNGDENVVLAVPKIPRRRRTTTTNSEEKDPKE PDPRTRRVHVHGGKDKWNWKKGKSKPKFN" CDS complement(join(278187..278264,278309..278540, 278991..279073,279231..279371,279414..279690, 279743..279855)) /gene="Cbr-srv-1" /locus_tag="CBG_16545" /standard_name="CBG16545" /product="Protein CBR-SRV-1" /note="C. briggsae CBR-SRV-1 protein; contains similarity to Pfam domains PF00001 (7 transmembrane receptor (rhodopsin family)) , PF10328 (Serpentine type 7TM GPCR chemoreceptor Srx) , PF10323 (Serpentine type 7TM GPCR chemoreceptor Srv) , PF02118 (Srg family chemoreceptor) contains similarity to Interpro domains IPR019426 (7TM GPCR, serpentine receptor class v (Srv)), IPR019430 (7TM GPCR, serpentine receptor class x (Srx)), IPR000276 (GPCR, rhodopsin-like, 7TM), IPR000609 (7TM GPCR, serpentine receptor class g (Srg))" /note="Predicted" /db_xref="GOA:A8XPG4" /db_xref="InterPro:IPR017452" /db_xref="InterPro:IPR019426" /db_xref="UniProtKB/TrEMBL:A8XPG4" /protein_id="CAP34485.1" /translation="MTIAFLDVAITIEYVSTAISLVCLPINILFVYILIIERNRPPYN TPFFRLCIHLSIADILMEVFSTLFFKFPSFGVFPDTFYKENWSVVPIAGMQYLGHAQA FGIIFIAVNRFTAVHYPIKHRQQWWTPKVTKTLLLIQWITPIFFMAPLFFTDFKFLFS RNSGSVIFAASDARFHKNYFLAMAIVDGILINSIVLLLYGAIFVRVHTHVVVRKPGEL ALRLALSAFIIFICYLALGVCSLLSALTPPPDAWVYRTMWFVVNDVLCNSSALVLLAL NRPIRKAFTRHLGIFSYQGVSTKNNSLLQAV" CDS complement(join(283588..283699,283750..283877, 283927..286419,286673..287029,287079..288193, 288250..290058,290107..291368,291414..291824, 291871..291966,293469..293678,294295..294405, 295083..295137,297384..297513,297564..297658, 297939..298072,298115..298193,298840..298972)) /gene="Cbr-ten-1" /locus_tag="CBG_16546" /standard_name="CBG16546" /product="Protein CBR-TEN-1" /note="C. briggsae CBR-TEN-1 protein; contains similarity to Pfam domains PF12661 (Human growth factor-like EGF) (2), PF07974 (EGF-like domain) (2)contains similarity to Interpro domains IPR013032 (EGF-like region, conserved site), IPR013111 (EGF, extracellular)" /note="Predicted" /db_xref="GOA:A8XPG5" /db_xref="InterPro:IPR000742" /db_xref="InterPro:IPR011042" /db_xref="InterPro:IPR013017" /db_xref="InterPro:IPR013032" /db_xref="InterPro:IPR028916" /db_xref="UniProtKB/TrEMBL:A8XPG5" /protein_id="CAP34486.2" /translation="MNRCLLAFPLSSSSTCRGDLERVEEVSFLVQTVFFFLSRCVCLA KPTQPLPHPEECGQPCVSGQSQMFQHRTTNAQGPPPNRPMPRPPAGMMMPSHEHDYTN DYEDPEELARSRGDGFTNHLLIKTTPPPQSHPTNFNSYEMSMSQQRRSQQNQQQPMAP PLSDCWGSGMHDGGVLHKNADGAYYIPSGSLRTTSSTLSPASGQRCLDQIPGGGQNVS IPSVILNFRYLILIVFPVCKNYRETDHIVLIEIRVCGGSHTFAVLYAAQLASFRGALV YSEDAEEKKKKIITFVPCIHARLRRRQSVCNYSNARKAVEPHSSGAPNTTYSDASTTL LKYPPPVGTYQNRRRQQVGTMNNGDPGVGGPPISATKKKKKFDEEGNSCSKWPSKWNL LLVAALLVALFIICILLCKFEFFFFFLQFYSYFSVRAPNYVYTQPAPSSDSMSSASSA AVSRYQDLGLRALPPAISLGERVDVEFFPKSMATTELTISKPSRIQFNATVGSGAQLV LLMSAGVHPSLSLHDALFPIRSDRIRDPKGPTHIVEEFGSRSRRSIGSGSSRHRSVEI LSPRSAIFEQFLLEGRHYLTFINERSRVEPISFVAEEIQRLTTPPKTSPGVSGSKEHP LASVLLCEANCNQRGECVNGKCHCAPGYTGRACEEAVCPVVCSGNGVFSGGSCVCKSG FKGKECEMRHNWCEVADCNGRGRCDTDGKCRCNPGWTGEACELRACPHASCNDRGVCV NGTCYCMDGWRGNDCSVFADAVVPPPQAQSPVKKSSEDSTRTRKNPTKSTVSTEKKKE SRELQTSTISPAVQVSQSQHICSSHGTLVDGICQCEPGWNTFDCSQRSCSCVNGDCLD EGSCQCWRGWRGANCTEKKCAVGCEDHGKCKSDGTCQCSAGWNGDNCYLDGCPNQCSG KGECVMDRRSSEWSCRCQAGSTGVDCSVPVEMHCDDGLDNDSDGLIDCDDPECCSSPS CSSESVCSTAATPTEVLMRMPPIFNANFAQRVGFLIMEKSVQSYTDASQFSESLISVI RGRVTWSGFTGNSEDLSTHANKSTVSLVGVRISDSAHPLYGFTLTREDGYFDLTVNGA RSVTLQFLRTQFQSVKKTVYVPPRQIIHIDDIILHRQSGSFAPVLTTPPARAKCSPTT RRLPEVVLISNWQYTSDGVETEKSTDSSRLVVDSRSIVESLPIQGTDVRLVYDSARSL AAPSTMLIGLLDDRVDKELRKIHLNIRFAGRRFDHTLAPRTNLTHVFAWDKKNAYRQS ESGLIPVTVQVGYEYQGCERSSERVWQTRKSHMLGATSRKMLGGMWTIDAHHHLDIVN SEFSKVVHEISIHTISDIVEMGNGGYRLISEGEPRVSTLAGIDGIKRDVECSKCDGRI ESISLFRPSTVVHGHDGSLIIGDHNLIRRVSPDGQVTTILTLGLADTSHSYYIAVSPV DGSIAISLPLHKQVWKISSVDPQDSRNNYDVLAGDGTVCGSAVDSCGDGALAQNAQLI FPKGIAFDKNGNLYLADSRRIRVVDTTGHIRSIGETTPDQHPIRTCAQITKLVDLQME WPTSLSIDPITDSVFVLDTNVVYEIDIEHDVITIALGSPTTCDLANATSMASASSHAA FTLDHRRHLIQNARDISVGSDGSIYVVESDGRRLNQVRKLSSDRTTFSILIGGKSPCS CDVAACGCDDSVTLREVPASQAHLNSPYAVCVAPSGDVIIADTGNSKIKKVSARLAKY DGRSRSYEVPDVERQEKYTFNRHGQHTSTVSLITGRTLFNFSYQVDSPTAMMSEIRSA SGVVLRVLKRNDSVYDLETTLGERTTCTMSTYDGTLEQVSKRDSATSRDATKLSYVKG LLFSRIDVATAVGFEYDQYGRANGLKRDGEHWSLGEEFISMGRVNTEVLLNNHRYQQV RLGDGDLAVHGTNGASTLISLLRNEGYSLTSPHGTSSLFVKSSTIPDGGGEPVISRRR TTVPAIGNPQRRALTTQWDWKHVARRGDDSDSSLGRRRVAEINGVNMFSMDYDVKSNR DTLRLGSTTEDAQSLLFIDYTSSGQVKRISAPEDSQMAEMNVTWDSTGRKSEVTWGSW KIRFAFDNSNRLTEHSVDGARVPIKMSYAGASRRPNEIQHDGAKWTIQYDNYDRIKEV LSKSQESTTFSAIALGGDEWVLKRRTSLNSKPSLVRIARDGRVLESTTPDEMHHWLER RDSATGRTTEILNDEETTVVTCWSSEGQPMCSRSPDFHENVTLQGHLVARRTVTIITP TSSEPSISSSFTYEYDDMLRVTTIQPVIEQSVLESIQLTYDDRRGHVASVNGLTWARD TTTSRCQGHGIMYETSKADEHHQVVERKLIFGSARASLKIGRDKAGRAFESLLEIVSS GSEQIQKITRTFDAAGRVASVEKTDQESTRIQYNSDARVEKINDRIVEWNRGGALKTF QEVPYQVDSIGWVVRRGNDTTFGYDGKGRLVSATILKPTQMKIKIVYDREDRVVRIDN GRDSTNLYYGYVDHPRLVSHFSKNGKISTILYDDDSIPFVMKSDDGTHYALLTDETST VRAIIGDSNVVKIVDRSVFGASLSTSASQVFLPIGYLGGVEIPEISVSILNNGRPLDL HSGRYMSISPDAIVRLDLNDQCSNSIDLMALETDRQPFKVENIPEGLLLFSIFFFLSL WFSDFSTWFSLAGLSSNLLPSAHLGLPASSPIVHRLLSSFPRKLRPLTHLTTVLPTSL ASDIPVKSTETSWSIDDVGFSNLLILNENVATEEIQIETLPDLKPEEREVITKLFDGV KSLNFASWGLVPTRHLWRSPNSKLELSSTSFPHFTMAVNKESVELRNGKSKIVVHFAD NKQQIIKRIVDELKTREKIAVWRAERKRAESGEKTWRQWSDRETRELISKGSVSGYDI QMKPSHQSGLLASVHSWKFQKSG" CDS complement(join(302488..302672,304313..304476, 304518..304677,305130..305154)) /gene="CBG25928" /locus_tag="CBG_25928" /standard_name="CBG25928" /product="Protein CBG25928" /note="Predicted" /db_xref="GOA:B6IK60" /db_xref="UniProtKB/TrEMBL:B6IK60" /protein_id="CAS00290.1" /translation="MGEEKKGKFTSKVPEPPIELTVCSLNNPSSNEVTTSSAKAENTH LADNSAETSSTDTGTISRMDNGGSKVPVLAVGTYHRKEAAPILAAAARLDLSATPTTS STQPISTLTKDKNKVVFAILAACLVVVVVQVVCRCTSVSNYERIIAVGTEVADDAIVI GVVQKLPFGLVLDAAVL" CDS join(307873..308024,308678..308774,309454..309603) /gene="CBG16552" /locus_tag="CBG_16552" /standard_name="CBG16552" /product="Protein CBG16552" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPG7" /protein_id="CAP34488.1" /translation="MSTLLALFRRLLFRRRATTDKASDESGKSQKTRTKSLNIPATNN SIREKTRIQVKRGSQVVIRNRSQSVTVERKHVSRSTDNKHSPSTRRQSHFTIHKSGNN LPTSLAPTLTSSYRMRSSSASKPTIIYIHS" CDS 309906..310124 /gene="CBG25929" /locus_tag="CBG_25929" /standard_name="CBG25929" /product="Protein CBG25929" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK61" /protein_id="CAS00291.1" /translation="MLPFGFLLRRILGGRRRRRNQSYSSDVTYRTVYVMPGAQQQASG FNEPPPAYYPQDPSQQTAFYPPQKGCGR" CDS complement(join(311533..311630,311679..311765, 311812..312137,312187..312287,312763..313323, 313647..313709,314809..314895,314947..315118, 315167..315491,315541..315664,315712..316032, 316081..316320,316367..316602,317144..317315, 319863..319985)) /gene="Cbr-lim-8" /locus_tag="CBG_16554" /standard_name="CBG16554" /product="Protein CBR-LIM-8" /note="C. briggsae CBR-LIM-8 protein; contains similarity to Pfam domains PF00595 (PDZ domain (Also known as DHR or GLGF)) , PF00412 (LIM domain) contains similarity to Interpro domains IPR001478 (PDZ/DHR/GLGF), IPR001781 (Zinc finger, LIM-type)" /note="Predicted" /db_xref="GOA:A8XPG8" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR001781" /db_xref="InterPro:IPR029980" /db_xref="InterPro:IPR036034" /db_xref="InterPro:IPR041489" /db_xref="UniProtKB/TrEMBL:A8XPG8" /protein_id="CAP34489.1" /translation="MPTVSVEKPLSVIPPEFCANANCPFSPKEISVLRIKVRGGVTKE EILEVNSASRPALPRQHSASTVSPLQSSSDELNNDSGIDNRTVGSPSTSEFSPRSTDL FVSPKSLIDEEPPHHPPPPPPVEEKLDQVLIPLKLSRSQDYAPIYRSLEKDTYYDQCP SESDKDEELTTNSRSYVESSRLLEKNQYMPVTNARVEATFKQPPPREGVKPFVSRAAQ ENNDFESRTENIDLTVELNREQKATVTATKYPRSDFIMEDHHRPQAQTHAPPPMKSSS TTRIYHAVDIPFDESPAAYYPKQNNDYPRQRRYSASSISKQDGMFTLNVVMGSQPVHK GMGFSTFKRENRVIVESVIVGSPADKAGLLVGDTILSINGEDMSDKYQSGVTRILHEA ARVGEADILILRAPAPAPMLTKQMSTSSSNSSNFDKARSVFTENKSFDSYAEFKRKHS RASRDSNSSGATRSSRDFNSLPRGTTAQSSLDRKRDTSLSSYRTAKDNFDSNRSSARS EYGDYRVTSYQEKNAPGRLTDFVPEVDRRLSRREQSEEIYSKTQREEEPRTIRNYHLS NENIARTNLNFDGRRGSEEESTTTTLKRSTLPRSGTTQWKNEYSDGEEVVEKLPVTSR DPSPLRSALKKSSHNYYHQESDPSPRPPPPRRFYSTESLIPNQKTSYQRYSEEEDEEI EESYTSMRRHRQQQPRYSDEFHTVGSYGVFPQRSRSQQPTSRLPRYDDVPDDVDFDDV SGVSHRFYDRSGNHVRAPRERTYDIQIQRDYGGSRSTPRDLDFVRNTYKWEEQQEDTK VTTTTKIYEKESRDWRDVINQQRQAAPGNSVDRRGIATTSASLSNLPTYINRRMEKER EREREYLRDREYSMPPVEPPIITEKYERDEYSRVEERTYPVPVARNNMRREETQMQSQ SQSQSQTSQSQSQSQSQDAVVAVSGKHRCAHCNEELGRGAAMIVESLNLFYHLACFKC YVCKTSLGSGATGADVRVRDGRLHCQTCYSNDRVQLSKV" CDS complement(join(319181..319213,320531..320683, 320732..320903,322867..322919,323756..323782)) /gene="CBG16555" /locus_tag="CBG_16555" /standard_name="CBG16555" /product="Protein CBG16555" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPG9" /protein_id="CAP34490.1" /translation="MIENDYAVKVAKYPPNLGSDYPEDEFGPGAKMLRGPGQKSSDPF QFVAVTKGGDEMAESAKNTLQMAQQQKAQREKMLQGQRQMQKFDDDSEPWRANLDTWR KKRKEKFGDRAVSENTVVTPKRQEEYASYQPRKMTTFQYLLQK" tRNA complement(320943..321015) /gene="CBG28899" /locus_tag="CBG_28899" /standard_name="CBG28899" /product="RNA transcript CBG28899" /note="C. briggsae predicted tRNA" assembly_gap 326778..326787 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(328003..328098,328415..328546, 328960..329056,329104..329204,331046..331292, 331337..331626,332247..332382,332434..332685, 332732..>332802)) /codon_start=1 /gene="CBG16556" /locus_tag="CBG_16556" /standard_name="CBG16556" /product="Protein CBG16556" /note="contains similarity to Pfam domain PF07735 F-box associated contains similarity to Interpro domain IPR012885 (F-box associated domain, type 2)" /note="Predicted" /db_xref="InterPro:IPR012885" /db_xref="UniProtKB/TrEMBL:A8XPH0" /protein_id="CAP34491.1" /translation="YINILKIPKKGLKILYEHLNPVDCYNLAKASPELKKQVKKHKPL SIRNIYLRFDDEKSCVGVYFDRHRYKYTACVFYMWKKGDGNYRFWNNLYYLKPAKFQS YLYTKLTHPKEVKAMQGTMFPIDFLMGMLETQKDLCSIFDATKATRYVGVNLINASNV TLDDPEWLTREHVLSLNCATADIGHNNLTADDLNAFLMQWMFLDTNQIRTERFEITLS PQAFQNKKAITNGLVLLDWDPKQREGEYFDVDQYLMKSTIRDPHSFYDCKFSKDILRE DGQLATVLFHGKRLHFLVWKNRFPYKILKEAREKEKNSQMRVMWGRCVIEALRLMNDT FHYHPYRQRKNSSTSTYSDCSSLSASPSSSTMTSTPPPQNCSANIYDRLKDYISEVPK DPIVCQILLNSLAHIIELERQLADLEQKTENLKMHQCPPPPYYASTKLHHEKVPEDLV TVDVSEFKHLVYSAPLVYDTISY" assembly_gap 333274..333431 /estimated_length=158 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(335625..335823,335869..336007, 336058..336285,336360..336570,336625..336862, 336908..337150,337192..337293,337344..338257, 338302..338494,338541..341359,341646..345476, 345708..347228,347275..347442,347547..349775, 351847..352281,352790..353224,353280..353798, 354027..355274,355352..355912,356538..357407, 357466..359461,359518..361466,361513..361947, 362082..362483,362535..363839,363897..366138, 366183..367786,367831..369135,369317..370666, 370765..371199,371223..373394,373457..373891, 373927..375863,375923..376197,376233..377314, 377368..377837,377880..378963,379013..379113, 379161..379490,379538..380577,380625..381200, 381245..381476,381528..382035,382341..382393, 382803..382901,384435..384657)) /gene="Cbr-dig-1" /locus_tag="CBG_16558" /standard_name="CBG16558" /product="Protein CBR-DIG-1" /note="C. briggsae CBR-DIG-1 protein; contains similarity to Pfam domains PF07645 (Calcium-binding EGF domain) , PF00092 (von Willebrand factor type A domain) (2), PF00041 (Fibronectin type III domain) (9)contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR003961 (Fibronectin, type III), IPR018097 (EGF-like calcium-binding, conserved site), IPR000152 (EGF-type aspartate/asparagine hydroxylation site), IPR006210 (Epidermal growth factor-like), IPR003599 (Immunoglobulin subtype), IPR001881 (EGF-like calcium-binding), IPR013032 (EGF-like region, conserved site), IPR018483 (Carbohydrate kinase, FGGY, conserved site), IPR002035 (von Willebrand factor, type A), IPR000923 (Blue (type 1) copper domain)" /note="Predicted" /db_xref="GOA:A8XPH1" /db_xref="InterPro:IPR000742" /db_xref="InterPro:IPR001881" /db_xref="InterPro:IPR002035" /db_xref="InterPro:IPR003598" /db_xref="InterPro:IPR003599" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR011041" /db_xref="InterPro:IPR013151" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR018097" /db_xref="InterPro:IPR036116" /db_xref="InterPro:IPR036179" /db_xref="InterPro:IPR036465" /db_xref="UniProtKB/TrEMBL:A8XPH1" /protein_id="CAP34492.2" /translation="MGGRNWLIRSAFLVSTFLLCISIAQVGFHLLYSTPNIVKFQELL PSIEVESLAQDLQIQEWMRTLRRVKRAPTRSNRPEPVVVGRNGTGKCVISADRASHFC GMEEEVSAPPIPPPDEGKCIISKASGREICYPSYSQLDTSCTDVIEKSSNGLVVPPVV PHATQVLSKLFLTILINFRVRAMAFVPPDNLRRLIIQYYRQQGKHQPKNATFSPKSFL FVKYHCDYGYEMVDEVDTMFCQDKQWVLTPPMCRGQGLCAADNGGCSHTCISYNDEKI ECKCPRGMTLDVDEKTCIKPVPKSLCRSLSGCTCNGVTETQFACSCGDNKQKCLLLTG PPKIYIEPQGPYEVAPGGNINISCTSVAYPFPDIYWYKNQRVNTNGQGQNILRSSQVL IIKEIYRNEEFTCVADNIHGSANRTVSIVVTGPGSAPNLKSASAGRTSLTVRWEPPSI INRPITTYTLYYTNNPQQPVKNWKKLEVKEPTREVAIPDLRPDTAYYIRVRANDQLGP GKLGNQVQIRTLKPAVRPYVTIVEGDEIRVPPMTPFELDCNVTKADPIPVLVWLHKGR SLNKGSKTQHIKMKNGGVLESTQFSCVAENEAGKSTKKINITVTGPSAPERIRYQIDG DKVTLQWEPPQITNGPMAGYDVYYTDDPSLPRDQWKVHHIDDPNARTTTVPRLNEKTP YNFFIVGRNRLGPGLRSSPFTATTWLASKPPIVLLEPQDEVTKEPSNDEMIIECGAQG VPKPKIIWLWSGTLIEDGKDEFRVYDTTPADAQDRTRSKLIAQSTTRSGVATCQAVNS EGSDEKKVPVKILGPGSAPIGITPTPMHTGFDVAWQPPKIPNGRIKDYVVYYSKDPDA PLSDWESRTVLADTRNLTIHVDDEDTPYVTKVQARTDDGPGIISEAYEVTTGRKQVPL SVRLEVTDPSVDPSSGETVVEPTQPIHFRCIADGRPMPSVSYSWLPSNASESGDEPVP IPIQTDENQPHRYNSIQVYSTTATKRVLLCQARNPDGTVDDRHVFIVNKPGSAPQNVE VIVDPDNRVTITWQPSKYPNGDITKYNVYITGDPSLPVDQWQVFPVDEVTDPKLVLQR GALQPETPYYVKIAAVNPHGEGIHTDAKHFDTVSGAPIDAPTDVLPSVSIDNTVNVTW SPPTQPLGPIKSYTVFFAPEYDDSDYKTWQRISVDAPDGADHGEITLPKEQFNPNTPY KIRVSSTNDLSEGPASEPFRFETGSGEIPPTITLEPSNSTYLVEPLGAVTITCTANGV PQPKVHWIKENGEHVDSATLQLYDVVKDSSATCVAENNAGKTQEAVTVQVTGPGTAPN EIVLLPMPNQEINVEWTSPDEVNGQITNYIIHYGEIAEDGSEPTTWDQITIPRDDVNH KLANLEPKKTYAVRVQAVSDRGPGVISAPQVIKTLPLAPQAITNPIIQVHPNNSVTIE FTPPDDPENPGKKIKDFVIQYTTDEEPDDESEWKELKFSDPDDTDDTTFVNIDGENFN PDTKYNTRIIARGEIDSQPSDTTLFATGDGVIAPSQPTFNVETEDGVIRVPAGTDYTI KCVSDGYPAPDIRWVDSHGNQLSDGPLLRIIDIRKTLNAKCLAENRGGLKETDLIVFV AGPGTAPENIQLTANKPTTISVQYEVPSIPNGNISKYIIYYTPLDDQDPNHQLGQVQT KPINEWLNVHDLNDGVEGPRKVDIKDFVNTDTAYAVVVQAINDDGPGPYSNQYTIRTM SRAREGPPVELRVEPDGQRSAVAQWKEPTTSDVPPIGYEIYYVRGDKSVEEDDSAGLN DWIKISIDDPSKLTHKIQNLLLPDTDYVFKMRAIYPDGPSVFSEPCIMKTLPDGSAPY IQISTGDNGVEGSTTINILPGSQMTIACNATGVPLPQVKWIKAGNYEIDPSRVDADKN HAQFSLQVGNITEDTTFNCVAQNPWVMRTGLSIDDFVTSKSDGGQIVLVFNDELPEYL KPPNEWTIQYTDDAEQPKDQWETIPSGGAPLTRVEVLNMNPGTYYYLVVDNPEKGIQT PTLVVMTPKPPSDIRFGKNNDDEQVVDFKPAITSEPVKEYTISVWPSSDPTNVKKFTT PADVTSGVVVDGLDPDTEYNIQVAAEFFEGEEIASEPITVKTPPRDVSCECEHACTFE LNEDDGTLEPKCYCHDGFHLTSDGKGCERDEEDDATSQAVLQVTPPSITTKVAPEELP TGEPETTSGTISPIVGPDGKPLPVDNKGRPIDSAGKRIEIYENGDPVAPDGTTLEKND KGEWIYPLVDKNGKPLPVDENNKPIITAVDEKGDPLIESEDGAFVTSDGKPVEVDILG RPLDKDGNPYKTNENGQFVVADVDGADMEEEDDEKPPVIPFYIIEVDDDGKYLDEEGN ELPLNEDGEPVDEDGNKLEKNGEGKYVKPKKAEDTPQPTKITIVSPDGTPLPTDANGS PIGLDGHPIPTDSSGRPLAKDGSPLPTDNQGNYVILPASRDEDQAPATDEAGRVIYPI LLPDGTLLATDSSGNYVNRHGDIVEKDDDGTPMGPDGQVLPTDASGNYVYPVTGPNGE VLPTDSNGKPIYPVRGPDGTPLPTDASGAIIGPDGEPIPTDASGKPLSKDGSPLPVDN RGNYVVLSTESDVTKTLPTDEAGMPVHPIVKPDGTLLATDSSNNFITENGDIIEKDEE GRPLGPDGQVIQNLSNILPTDATGNYIYPADGPDGQVLPTDSTGKTVYPVRGPDGTPL PTDASGAVVGPDGEPISTDSSGIPLDKDGSPLPTDASGNYVLIPTDEPVTKSYPTDDS GVTVYPIVKPDGTPFETDSTGVFVTDDGQAIEKDSDGKPLGPDGQVLPTDASGNYIYP SIGPDEQPVPTDSLEKSVHTVRGPDGTPLPTDASGAVIGPDGEAIPTDGEGAPLNKDG SQLPTDNNGNYVLVPIGEDDFKTVPTDESGNVIYPIVKPDGTLLSTDSTGNYLTDAGE VVEKDDNGKPLGPDGSVLPTDASGNYVYPAASESQVFPTDAYGKPIPTIIGPDGTLLP TDGLGSVVGPDGVPIITDQTGTPLDKDGAPLPTDDSGNYVFITTQHPTDEVVTPITKP DGTPLATDSIGNYVNDNGDIIEKDNEGRPLGPDGTVLPTDDSGNYIYPATTIDGELLP TDSAGKTIYPVRGPDGTPLPTDASGIPVRPDGEPIPTDENGTPLAKDGSPLPTDNNGN YIYVPDDVETKELPTEEVDHVVHPIVNPDGTPLGTDSSGNDVTFTGEVIQKDDDGKPL GPDGSVLPTDDSGNYIYAVVGPDGQVLATDDSGKPIYPVRGPDGTPLPTDASGAVIGP DGEPVPTDASGKPLSKDGSPLPTDASGNYVLIPTEEDTTKTLPTDEAGLVIYPIVNPD GTPLATDSTGAFVTQDGSTIDKDEDGKPLGPDGSVLPTDNSGNYIYPVIGPDGQPLPT DSSGNPIYPVRGPDGTPLPTDSKGNVIGPDGEPIPTDASGKPVAKDGSPLPTDNQGNY VLVPTVGEVTKALPTDDAGNVIYPIVMPDGTLLTTDSTGEYVTDNGQIIEKDDEGKPL GPDGQVSETLLNVFFILPTDATGNYIYPADGPDGQVLPTDSTGKTVYPVRGPDGTPLP TDAFGAVVGPDGEPISTDASGIPLDKDGSPLPTDASGNYVLIPTDETVTKSYATDDSG VTVYPIVKPDGTPLATDSTGAFVTDDGKTIEKDSDGKPLGPDGQAIKRIIPKDYKKVT LQNLPTDDIGNYIYPAVGPDGQVLPTDASGKPIYSVRGSDGTPLPTDSEGNVGPDGEP IPTDASGKPLSKDGSTLPTDASGNYVLIPTEEETTKALPTDSVGNVIYPIIKPDGTPL ATDSYGSHVTDEGHVIEKDDEGNPVGPDGSVLPTDESGNYIYPAVGPDGQVLATDSTG KTVYPVRGPDDTPLPTDASGAVIGPDGEPIPTDASGKPLSKDGSPLPTDNQGNYVFVP SDEDTTKVLPTDDSGNTIFPIVKPDGTPLSTDSTGNFITENGEIIERDDNGKPMGPDG QVLATDDSGNYVYPESGTVEQVLPTDVSRKPVHQVIGPDGFPLPTDSAGNVIGLDGEP IPTDSDGVPLSNIGLPLPTNSDGEYITLPSDSGETKAKPMDDEENDVYPITTADGTPL ATDSTGSFVTDDGKIVEKDDDGKPIGPDGQVLPTDDSGNYVYPAVRPDGQVLATDDSG KSIYPILGPDGTPLPTDASGAAIGPDGEVIPTDASGKPLSKDGSSLPTDASGNYVLIP TEEDTTKALPTDEAGLVIYPIVNPDGTPLATDSTGAFVTQDGSTIDKDEDGKPLGPDG SVLPTDNSGNYIYPVIGPDGQPLPTDASGNQIYPVRGPDGTPLPTDSDGNVIGPDGEP ISTDASGKPLAKDGSPLPTDNNGHYILVPTGDDTTKALPTDSEGNVVYPITKPDGTPL GTDSTGKFITEEGQVVEIDEEGKPVGPDGAVLPTDASGNYIYPAVGPDGQVLPTDSTG KTVYPVRGPDGTPLPTDASGVVIGPDGEPIVTDSSGIPLDKDGAPLPTDASGNYVLVP AGEEVTQALPIDVSEVVISPIIMPDGTLLGTDSTGAYVTNDGQIIEKDDEGKPIGPDG KVLPTDASGNFIYPVVGPDGQVLPTDASGKPVHPVRGPDETPLPTDSEGNVIGPNGEP IPTDASGKPLSKDGSPLPTDNNGNYILVPSDEEVTKALPTDDSGNVIYPITKPNGSPL PTDTNGVFVTENGDVIEKDEDGKPLGPDGEVLPTDASGNYIYPENGPDGQPLPTDSEG QNVEPESPSSSPDSQMLPTDASGKTIYPVHGPDGLPLPTDESGAAIRPDGELIPTDES GTPLADDGSPLPTDDAGHFIFVPSPEIATTPEDAGPSYIIRPVVRPDGTPLSTDSTGT YITDDGEVIERDDERKPLGPDGSVLPTDDEGNYIFVTSEQPTEETALVATHTPITKPD GTILGTDSSGHFLTENGDIIANDNQGRPIDIDGQVLPTDASGNYVYAEKTTQGDTVFI PTEVVPIAHEEPNCDKVDGRVETLLLVVESSHTSAPYLDTLKKLIKNLLLTTPREFLP KIGTIIYSGSSEITVDIGDYADFKELYDSTNEIREISGTPDMTNALFTARNVLSGINR GETVVIHFSASPMRTSSKANTDRLRALPKTRLVHLDEQQWANDPNAVDLLRSYLCIPT DGEFSDSKFSMKLLFFSVPSPSMLPTDASGNLIDVSTEAPVTDGPPTDAAGFVIYPIV RPDGTPLATDSTGVFVTDDGTVIEKDDEGKPIGPDGEVLPTDASGNYIYPIIGPDGQP LPTDSNGNPIYPVRGPGGTPLPTDASGAVIGPDGEPIPTDSSGKPLAKDGSPLPVDNQ GNYVLIATEETVRESYATDETGNVIYPIINADGSPVPTDSEGNYITASGEVIERNEEG KPLGPDGSVLPTDASGNFVHPADSEESATETPIITHGPDGQVSFFVMTVSISVFLKVL PTDASGKPIYPVRGPDGTPLPTDASGAVIGPDGEPIVTDSSGIPLDKGGAPLPTDASG NYVLVPTEDTTKTAPTNSEGNVVYPITKPDGTSLGTDSTGSFVTDDGQTIERDEDGKP LGPDGQVLPTDNSGNYIYPSTTPNEQTLPTEGAFTHYEVRGPDGTPLPTDESGNVLDL DGERIPTDSTSGIPLSKDGSPLPPDNDGKYILVPTEETIRKILPTDETKEETVYPVVQ PDGTPMGTDSTGNYVTTTGEIIEKDGEGKPLGPDGSVLPTDGSGNYIYPAIGPDGEPL ATDASGKTVYPVHGSDGSPLPTDASGAVIGPDGEPIPTDASGKPLAKDGSPLPTDASG NYVLIPSDEETTKALPTDDSGNVIYPITRPDGTLLGTDSSGNFVADDGQIVERDESGK PMGPDGQVLPTDDSGNYIYPAVGPDGQTLANVSTIQHVYSVHGSDGSPLPTDASGAVI GPDGEPISTDASGIPLDKDGSPLPTDASGNYILVPAGEDVVKTPPTDGNGVIIYPIVQ PDGTPLKTNSDGNYVTATGDVIERDEEGKPLGPDGSLLPTDDSGNYIYPAVGPDGQPL ATDSTGKTVYPVRGPDGTPLPTDASGAVIGRDGKPIPTDADGKPLGKDGSPLPTDNQG NYVLVPTDEDTIETLPTDESGNVIYPITKPDGTPLGTDSTGKLVTDDGQVVEIDDEGK PVGPDGAVLPTDAAGNYIYPFVGPDGQVLPTDASGKPVYPVRGPDGTPLPTDSEGNVI GPDGEPIPTDASGKPLSKDGSPLPTDDNGNYVLVPTGGDVTESLPTDDSGNVIYPITR PDGTPLATDSSGNFIADDGQIVEKDESGKPMDPDGQVLPTDSSGAYIYPQILTDEAST LKPSYPVHGSDGTPLTTDAYGAVIGPDGEPIPTDASGIPLDRDGSPLPTDDEGNYIYV ATDIPTEETTDSPIVITRPDGTPLGTDSTGNFITENADIIEKDDEGKPIGPDGQVLST DSTGNYIYPVIGPDGQVLPTDSTGKTVYPVRGPDGTTLPTDASGAVIGPDGEPIPTDA SGKPLSQDGFPLPTDNQGNYVLVPTGEDVTKSLPTDDSGNVIYPITRPDGTPLGTDAS GNYVTDEGETIDKNEDGKSIGPDGQILPTDATGNYIYPVVGPDGQVLPTDASGKPMYP VRGSDGTPLPTDSDGNVIGLDGEAIATDSSGKPLSKDGSPLPTDTSGNYVLVPTDEET IKTLPTDDSGNVIHPVTRPDGTPLGTDSTGVFVTDDGQVVEKDEDGKPIGPDGSVLPT DDSGNYIYPAVDPDGQVLPTDASRKPIYPVHGADGTPLPTDSDGNVIGPDGEPIPTDA SGKPLAKDGSSLPTDASGNFVLVPSDEVTTKVLPTDSEGAEVYPVINPDGTPLATDST GKFVTEDGQIIETDEEGKPVGPDGQVLPTDASGNYIYPVVGPDGQVLPTDSNGNPIYP VFGPDGTPLLTDATGAVIGPDGEPIPTDESGKPLSKDGSPLPTDNNGNYVLVPTGEDT TKDLPTDSAGNVVYPITKPDGTSLGTDSTGKFITEEGQVVEIDDEGKPVGPDGAVLPT DASGNYIYPAVGPDGQGLPTDSTGKTVYPVHGPDGTPLPADGSGAVIGPDGEPISTDA SGVPLDKDGSPLPTDNQGNYVILPSDDKKGPTKCDIAHSLSDVIFVLVNDGDGSQNYE QFRKTVVGFSKKVDMSPDVVRLAVLSVGSEIAVPLPLGGYQEKEHLNSILASFQLPPT IGTEILSPVEAANQQFSSFPRTGISKMVVIFADNEERTTQIGGATYVTVKYGTTPKEI IGTLTEACQKGTVDIVPDDTKQVIDNTVHSTSSTPVIVDQSGKPLPTDATGNYLDNNG NPIVIESNEPTGPEDQKLSKNEKGEWIYPLVDKSGKPIATDENDKPVITVIDNDGNEL SKNDDGNWIDLSGNEIDTDELGRPLDSEGKPYEFDNDGRVVIVPEVEEDATPAIPFII VDGEPINEIDGQYTDSDGNVIETNSDGLPIDENGQVLPKNQDGEYVKPKTVGTTQASI VSPDGTPLPTDASGSVIGLDGAPILTDSSGKPLAKDGSPLPTDNQGRYVLVPASKDTF DSTLPTDSAGNVIHPVVNPDGTLLSTDSSGNFITQTGDIIERDDEGKPVGPDGSALPT DASGNYIYPVVGPDGQVLPTDSNGNPIYPVFGPDGTPLTTDASGVVIGPDGEPVPTDS SGKPLAKDGSPLPKDASGNYVLVSTDEDTTKALPTDEAGNLIYPITRPDGSLFGTDST SEHITDDGQLIEKDEDGKPIGPDGSVLPTDASGNYVYPAVGSDGRVLPTDASGKPIYP VRGPDGSPLPTGASGAAIGPDGEPIQTDANGKPLAKDGSPLPTDVSGNFVIVSSDEVL TKSAPTDSEGNVIYPITNLDGTPLGTDSSGAFVTQDGTVIEKNEDGKPVGPDGQVSDY TFSIIEVLPTDDSGNYIYPAIGPDGQVLATDASGKPIYPVRGPDGTPLPTDASGAVIG PDGEPIPTDESGKPLSKDGSPLPTDNNGNYILVPRGDDTTKTLPTDSEGNVVYPITKP DGIPLRTDSTGKFITEEGKVVEIDEEGKPVGPDGQVLPTDASGNYIYPVVGPDGQVLP TDSTGKTVYPVRGSDGTPLPTDASGAVIGSDGEPIPTDASGKPLSQNGSPLPTDNNGN YVLVPTGEDVTKALPTDDSGNVIYPITRPDGTPLGTDASGNFVTDEGESIDKNEEGKP IGPDGQILPTDADGNYIYPAVGPDGQALPTDTFGKTVYPVHGSDGTPLSTDASGAVIG PDGESIPTDASGKPLSKDGSPLPTDASGNYVLIPTEEDTTKTLPTDDSGIVIYPITRP DGTPLGTDSTGAYVTDDDQVIEKNEDGKPFGPDGQVLPTDASGNYIYPVTGSDGQVLP TDSGLPVIVDQSGKPLPTDKLSKNEKGEWVYPLVDKSGKPIATDENDKPVITVIDNDG NELSKNDDGNWIDLSGNEIDTDELGRPLDSEGKPYEFDNDGRVVIVPEVEEDATPAIP FIIVDGEPINEIDGQYTDSDGNVIETNSDGLPIDENGQVLPKNQDGEFVKPKTVGTTQ ASIVSPDGTPLPTDASGSVIGLDGEPIPTNSNGKPLAKDGSPLPTDNQGRYVLVPSDD STTKTLPTDETGNTIFPITRPDGTLLATDSTGEHVTDDGQVIEKDEEGKPIGPDGSVL PTDASGHYIYPAVGPDGQVLPTDASGKPIYPVRGPDGAPLPTDSEGNIIGPDGEPFPT DASGKPLSKDGSPFPTDASGNYILVPAEEETTKTLPTDSEGNLVYPITRPDGTPLGTD STGAFVTQDGSVIEKDEDGKPVGPDGQVIEKFSTAVPKKQESPRQFHSQTITKYLIQV LPTDDSGNYIYPVVGPDGQVLPTDSTGKTVHPVRGPDGTPLPTDASGAVIGPDGEPIP TDASGKPLSQDGSPLPTDNEGNYVLVPTEDDSAKALPTDDSGNVIYPITRPDGTPLGT DASGNFVTDEGESIDKNEDGKPTGPDGQVLPTDADGNYIYPAVGPDGQVLPTDDSGKP VYPVHRSDGAPLPTDASGAVIGPDGEPIPTDASGKPLAKDGSPLLTDASGNYILVPSD EETPKALPTDSEGNVVYPITNPDGTPLGTDSSGAYVSQDGSVIEKIEDGKPVGPDGQV LPTDASGNYIYPVVGPDGQVLPTDATGKTVYPVRGPDGTPLPTDGSGAVIGPDGEPIP TDPSGKPLSKDGSPLPTDASGNYILVPAEEETTKTLPTDSEGNVIYPITNPDGTPLGT DSSGAFVTQDGTVIEKNEDGKPVGPDGQHVYPVRGPDGTPLPTDASGAVIGPDGEPIP TDASGKPLSQDGSPLPTDNQGNYVLVPTGEDVTKYLPTDESGNVIYPITRPDGTPLGT DASGNFVTDDGTVVEKDDEGKPVGPDGAVLPTDADGNYIYPAVGPDGQVLPTDASGKT VYPVHGSDGTPLPTDASGAVIGPDGEPIPTDASGKPLSKDGSPLPTDASGNYVLIPTE EDTTKTLPTDDSGIVIYPITRPDGTPLGTDSTGAYVTDDDQVIEKNEDGKPLGPDGQV LPTDASGNYIYPVTGSDGQVLPTDAGLPVIVDQSGKPLLTDATGNYLDNNGNPIVIES NEPTGPEDQKLSKNEKGEWVYPLVDKSGKPIATDENDKPVITVIDNDGNELSKNDDGN WIDLSGNEIDTDELGRPLDSEGKPYEFDNDGRVVIVPEVEEDATPAIPFIIVDGEPIN EIDGQYTDSDGNVIETNSDGLPIDENGQVLPKNQDGEFVKPKTVGTTQASIVSPDGTP LPTDASGSVIGLDGAPIPTDSSGKPLAKDGSPLPTDNQGRYVLVPSDDSTTKVLPTDE TGNTIFPITRPDGTLLATDSTGEHVTDNGQVIEKDEEGKPIGPDGSVLPTDASGKYIY PAVGPDGQVLPTDASGKRIYPVHGADGTPLSTDSEGNIIAPDGEPIPTDASGKPLAKE GSPLPTDASGNYILVPSDEETTKALPTDSEGNVIFPITNPDGTPLATDSSGVFVTQDG SVIEKNEDGKPVGPDGQVLPTDASGNYIYATDGDKQINPTDASGNLIYPIIAPDGSVI EGPEKPAEPVGPDGKVLPTDDEGYFIDMDGQRLPTDSVGLVVYPVTNPDGSPVGTDSI GAYVTQDGKVIEKNEDGKPVGPDGQVLPTDESGNFIYPVIGPDGQVLATDSTGKTVYP VRDPDGTPIPTDASGAVIGPDGEPIPTDTSGKPLSQDGSPRPTDNQENYVLVPTGDDV TKTLPTDGEGNIIYPITRPDGSLLGTDSTGKFITDDGIRVEVDDEGKPVGPDGSVLPT DASGNYIYPAIGPDGQVVPTDASGKPIYPVRGPDGTPLPTDYKGNVIGPDGEPIPTDT SGKPLSKDGSPLPTDNQGNYVLVPIGEDVTEALPTDEAGNIIYPIVKPDGKLLATDTT GAFVTDDGEIIERDEEGKPVGPDGSVLPTDASGNYIYPAVGPDGQVLPTDGTGKHVYP VRGPDGTPLPTDASGAVIGPDGEPIPTDASGKPLSKDGSPLPTDASGNYILVPAEEET AKALPTDSEGNVIYPITNPDGTPLGTDSSGAFVTQDGSVIEQNEDGKPVGPDGQVGFH VLPTDDSGNYIYPVVGPDGQVLPTDSTGKTVHPVSGPDGSPLSTDASGAVIGPDGEPI PTDPSGKPLSKDGSPLPTDASGNYILVPADESTTKVLPTDGDGNVIYPITKPDGTPLG TDSDELFISENGDVIGRDNEGRPLGPDGQVLPTDASGHYLYSITGPDGQILPTDASGK PIYPVFNEDGTQLPTDSTGFAIGPDGQFVATDSTSGVPLAKDGSPLSTDATGHFVLVP SGTFTKDSLPTGDADVLPSIKKPDGTPLGTDSSGEFVTDDGTVVEKDDEGKPIGPDGA VLPTDDSGNYIYSAIGPDGQVLPTDASGKPIYPVRGPDGTPLSTDASGAVIGPDGEPI PTDTSGKPLSQDGSPLPTDIQGNYVLVPTGEYVTKSLPTDSEGNVVYPITRPDGTPLG TDSTGKFVADDGKIVEVDDEGKPVGPDGSILPTDASGNYIYPVVGPDGQVLPTDASGK PIYPVRGPDGTPLPTDSEGNVIGPDGKLIPTDSSGKPLSKDGSPLPTDNNGNYVLGSS VEDTTKALPTDESGNIIYPIVRPDGTLLPTDSTGAFLTEDGEFIERDDEGKPIGPDGQ ILPTDASGNYIYPAASSDGQVLPTDDEGEVIYPITSPDGTPLATDSTGRFVNEDRQVI ERDDTGKPVGPDGQVSVSFFCSNFFIKRRTMLSDMFKTYISLKLQVLRTDAFGNYIYP AVAPDGQLLATDASGKPIYPVRGPDGTLLPTDSEGNVIGPDGEPIPTDASGKPLSKDW SILPTDNNGNYILVPTGEDVTKTLPTDSEGNVAYPITKPNGTPLGTDSTGKFITEEGQ VVQIDEEGKPVGPDGQVLPTDASGNYIYPAIGPDGQVLPTDSTGKTVYPVRGPDGTPL PTNASGAVIGPDGEPIPTDASGKPLAKDGSPLPTDNDGNYILVSSDESTTKVLPTDSE GNVIYPITMPDGTPLVTDSTGEYLTEDGQAIVRDDTGKPLGPDGQVISETLKKLMSEF KVLPTDASGNYIYPVVGPDGQVLPTDSTGKTVYPVRGPDGTPLSTDASGAVIGPDGEP IPTDASGKPLSEDGSVLPTDNNGNYILVPSDEATSKILPTDEDGNVIYPITRPDGTPL GTDSTGAFITQDGTNIEKDEEGKPVGPDGQVLPTDESGNYIYPVIGPDGQVLPTDATG KTVYPVRGPDGTPLPTDASGAAIGPDGEPIPTDSSGKPLSKDGSPLPTDNNGNYILVP SVEDKTGVYPTDASGYVIYPIVRPDGTLLGTDSTGAHITDDGEMIERNEEGRPVGPDG ETLSADAAGNYIYPAVGPDGQVLSTDASGKPIYPVRGPDGTPLPTDSKGTVIGPNGEP IPTDSSGKPLSKDGSPLPTDNNGNYILVPTGDETTKTYPTDSDGNFIYPITKPDGTPL GTDSSGAFIAQDGSVIEKNKDGKPVGPDGQVLPTDESGNYIYPITGPDGQVLPTDGSG KSIYLVHGPDGTPLPTDEIGSAIGPDGELVPTDSSGKPLSKDGSPLPTDNNGKYIYVV SDESTTKILPTDETGNVLHHVTRADGTLLGTDASGDYVTDNGQVVQKDDEGKPIGPDG QVLPTDDSGSYIYPITGPDGQVLPTDASGKPVYPVFNEDGTQLPTDPTGFAIGPDGEL VTTDSTSGIPLAKDGSPLPTNASGQFVIVPAKDTTKALPTDENGLIIYPITRPNGTLL STDSTGSFLTDDGKLIDKDSEGKPLGPDGSVLPTSSSGNYIYPAVGPDGQILPTDTSG NVIYPIFYPDGTPLGTDSTGSFITEDGEVVGKDSEGKPVGPDNQVLPTDGSGKYIYPA IEPDGEILPTDASGKSIHPVYTPDGTKLPTDASGSAIDPDGQLVPTDASGKPLGKDGS VLPTDNNGRFVLVHGDGVVTKTVPTDESGKTIYPITRPDGSLLSTDSTGIFLTDDGHV IDRDEEGKPLGPDGQILPTDGYGNFVYPAESDIGGAKLLPTDEYGHTIFPVIRPDGSL LSTESSGSFVTDDGKLVSKDGQGKPLGPDGQVLPTDSAGNYIYPSIGPDGSPLPTDVN RKPVYTVIGRYGDVLPTDSEGRSVNIDGSVVPTDESGLPIDQYGMVLPTDTTRKLHTL VPTRRPSEYCYVTSHIDLLLVIDSSNNIKVLDYRVMKELIKNFLTEHFNLRKHQVRVG LVKYGDGSEIPISLGDYDNEDDLVHRISESRRLKGRAQLGAGLREALDELSISGVDGV PQIVLVVKNGKASDDYSSAVKSLKSERNVTIFVVDSGDDESQDQNSELTDADKIVVIP QWRGADSEVLGPIADYICKIVPNVESARTWPTPRTKATTLAGSRRSCSTIDYESDVII VLDSSENFTPDEFDSMKDAVASIVDTGFDLAPDVSKIGFVIYSDKVAVPVALGHYEDK IELLEKIVDAEKINDGVAIALYGLNAARQQFQLHGRENATKIVLLITNGKNRGNAAAA AEDLRDMYGVQLFAVAVGSNPDELATIKRLVGNANPDNAIEVAQSTEIDDNAVGILKA VCGNTAPKNSEMPAHLTTKRDLGSQKYTTAPMLRTTRAVSGGLCNDGIRRPYHINILV DITSRASSEEFERVLDHLVNFFNDRLRDEQHMITINIITVNSEKVQKISNSLRVDQLA DELNTIKQQAEDSVSPKLGAGIDALVELSRENYINGAVKLMIIVSSDGTSSDDALPAS EYANGDFQHNIIAISVRKPATDLLSKVAGLPTRVIHLDQWSAPNELFDSWIAYITCDY ATASTTRKSTTPKMTTLLPFGRDASKEDATNIELIPLSPSSISVSWTCCTNNKSNYTI LYTHDTSIPKKKWLRKEATCRDSFGTHLDNLPSDHTYTICVMTTERVENSTALAIDKN CDRIHIDLNTTAPENYVKPSPTSCNCQCSSEGKAVLRATCEMVIDTNRPIATLPPATV DECPCKVKAHGGRCPKGYIAKDGQCYDIDECATNNGQCSEGCVNTPGAYYCACPHGMM RDPLDPFNCVNTANSFDKIAALLANYLEANTKNKDSEVTSEKSGGRVNYKATIKSADD KTITFEWSHVPEVVRRAFKWLF" CDS complement(387141..387362) /gene="CBG25930" /locus_tag="CBG_25930" /standard_name="CBG25930" /product="Protein CBG25930" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK62" /protein_id="CAS00292.1" /translation="MVGRMVSSSRSPSWKHFVYNTLIIVGHRERKLGEWAHMSSSPHL TVICTRSVLIYIIPGDILVVPNMELCIKV" CDS complement(join(395147..395519,395570..395586)) /gene="CBG25931" /locus_tag="CBG_25931" /standard_name="CBG25931" /product="Protein CBG25931" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK63" /protein_id="CAS00293.1" /translation="MEVSRHCEEKQYHESREQMAARKQKRRELKDKFAKERKERRSEK ERIKLEEGRGRNYETRMKRKKEAEKRLAVPKKTEIWEEKMEQQEENFRQWKMLQQEDS SKIQKKEEDVEEGKKNEEVMKKDNVRT" CDS join(396736..397085,397134..397215) /gene="CBG16562" /locus_tag="CBG_16562" /standard_name="CBG16562" /product="Protein CBG16562" /note="Predicted" /db_xref="InterPro:IPR035126" /db_xref="UniProtKB/TrEMBL:A8XPH2" /protein_id="CAP34493.1" /translation="MSAAFHVFLLFAAFVGMAEMCGNLHSTETPATVDTSSHKPPGDR KRRSAGGSTIVHIELQTTLTSAGEVEFSKIENELTEEYQKLLDKAHRQVTTGFEGASV LKYMFTDADCGIAQLFAQSAKDLSSFVTGATIRCNGQTSHI" CDS complement(join(397419..397618,397664..397866, 397927..398071,398122..398473,398520..398750, 398797..399018)) /gene="Cbr-odr-4" /locus_tag="CBG_16563" /standard_name="CBG16563" /product="Protein CBR-ODR-4" /note="C. briggsae CBR-ODR-4 protein; contains similarity to Interpro domain IPR002085 (Alcohol dehydrogenase superfamily, zinc-type)" /note="Predicted" /db_xref="GOA:A8XPH3" /db_xref="InterPro:IPR029454" /db_xref="UniProtKB/TrEMBL:A8XPH3" /protein_id="CAP34494.2" /translation="MASALAIPVTELMILFDVQLQEWVTKSSKNHEFVQSDKGIPASA YFLLGSFCSDGDIHVAYASKCPVHSSALEENAPEKAKMLDDDWMADHAERLLRMLPGG IHVVGVAWFSDKATFQQRKPHIHKTLGRIQKMNNQITTANIDDSISDHLITVFFETPS TTPVGAVINLANRGIESVQKVQFQKLEWISLVTNASARIVHNVPVEVGKPTDFYSDLM VATKNFVTNLFQCEYTLLDGEIRDDKEPLIKDIKKNKKTTIEATLFLNPLDNREAGAT DDIASNMHEVLFDIEVRAAVPIRSTVKDAIRAIKHHLVRNVTPLRVHGSGRGRKITKG WDHSSSTSKTSNHCSLYTPAILINDFLFEADNVEDAQKNFDDMMDLQTSIEHVDEGWE RALTPEEMESVRTPIEDLHFVDYDGSSDSWCTTKTLLITIAMIIGILASIIYFTVAHS " CDS join(401519..401610,402205..402456,402504..402735) /gene="CBG16564" /locus_tag="CBG_16564" /standard_name="CBG16564" /product="Protein CBG16564" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPH4" /protein_id="CAP34495.1" /translation="MTLSIRNLLLTLVLLFKQLEIVETSSNSLSSQPRKYEYNSKWCK GPIDGDCNPYNCGGGCESKYIRFYDQAFKMDRTIKSCFCQQERLCSILGMHAFSGCKS YYQLSSVAQKFVRYWSMDRRDHKNRHSNSVRHRYSDKARHFQLLNGNSRFCCRATAQK RLALHLKSTSSSIVKFSFVSTFIAFLYYLTH" CDS complement(join(402986..403211,403514..403662, 403712..403918,403984..404355,404400..404492, 404566..404658)) /gene="CBG16565" /locus_tag="CBG_16565" /standard_name="CBG16565" /product="Protein CBG16565" /note="contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domain IPR001680 (WD40 repeat)" /note="Predicted" /db_xref="GOA:A8XPH5" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR028884" /db_xref="UniProtKB/Swiss-Prot:A8XPH5" /protein_id="CAP34496.1" /translation="MSFITAFGDRVFVASGDLIRTFRIGDDEGMTPLISWSELNPERI QKPSFEAEKDLKAVDKRVILCLAHSNMIAAHGRRLVAVGTNEKQIHVFEYFIDNNYKI VKAEHIVTSVVPKAPTAIVFDREDAYVVVGDRSGDVHRFSVLNGSAIEMAGAISMILD VAFSPDGKRLLMADRDEKVRAMRYPSTYVIDAYCLGHTEYVKTLAIQDNDTVWSSGGD KNLHMWSITNCSKPRRTIDLSEWDAPVRKISINVAHKKIAVLFEKKDKMIVVDLETDP AATQSVTILNESECLDVTSTGHYFIVLGRSTITVINLLTMLQATFPIDDELNAVLSAT KDAVDNLFKNVTHNNQLEYEKRKAEKFEQIEQKRRRLNNQEPSTS" CDS complement(join(404917..404953,405001..405440, 405485..405555,405604..405793,405838..406002, 406047..406310,406359..406733)) /gene="CBG16566" /locus_tag="CBG_16566" /standard_name="CBG16566" /product="Protein CBG16566" /note="contains similarity to Pfam domains PF12695 (Alpha/beta hydrolase family) , PF12697 (Alpha/beta hydrolase family) , PF00561 (alpha/beta hydrolase fold) contains similarity to Interpro domain IPR000073 (Alpha/beta hydrolase fold-1)" /note="Predicted" /db_xref="GOA:A8XPH6" /db_xref="InterPro:IPR000073" /db_xref="InterPro:IPR029058" /db_xref="UniProtKB/TrEMBL:A8XPH6" /protein_id="CAP34497.2" /translation="MPSIWGYIFGPRLYGIFAEPDRQESNLETLGNTVISFSSGMNVR EVLFLKILHLGLYYVATSLAFGPLIVIYLYGRDWLTPVGAMTILKYAVWMTMIGFGAR AFGRYFDETYSRFLDIWQNESNKKDDNNHTALKKYDFELLNVTPDYEARSNPELWHLI PDASDAGTFTRGLASWAVHAFGRHLIYPGSVSFLKYIMRSSLNNARKLMVQNKEGKRV WIKTSEGDVIDAMFIRGNANLSQNLVLCFEGNAGFYEIGVMHAPAQLGYTTLGFNIPG FGESTGLPYAKKTLAAADAVMQYSIEVLGYRPENIVLFGWSIGGFPVAWLASNYRNVK AVVLDATFDDLLPLALFRMPGFFASVVEFAIRNHMNLQVDKLVILSQLNNEMNRFFQL TRYKGPIRLIRRLQEEILTTSADDQPESIRRSTNRINWLLKSIIRDRHSELIRNLEPQ VDRWLDMSPAERLMQTGVSLREESQQRKRLFDACSHYLVDFDANHVTPLDPQYFNIPE GRDTF" CDS complement(join(406903..407260,407309..407433, 407479..407508)) /gene="CBG16567" /locus_tag="CBG_16567" /standard_name="CBG16567" /product="Protein CBG16567" /note="contains similarity to Pfam domain PF06658 Protein of unknown function (DUF1168) contains similarity to Interpro domain IPR009548 (Protein of unknown function DUF1168)" /note="Predicted" /db_xref="GOA:A8XPH7" /db_xref="InterPro:IPR009548" /db_xref="UniProtKB/TrEMBL:A8XPH7" /protein_id="CAP34498.2" /translation="MRLERLQQNIEKPAPIPTKKETLRAPKAPLEFVRNVVGSSAAAG SAEFHIYRNNRRKEQNRLDYIDAVAKKEELDEAYRVKVNEQQMKEDSKTAKKRAKRSR QKANAKKRKMAKKTDDSDDSSSSDDSDDDSDSEAEEDTEKKASTEEDSGKRDDAEERT FERSFHPRSW" CDS join(408518..408576,408621..408776,408822..408922, 408970..409121,409164..409359,409399..409693, 409742..409913,409962..410090) /gene="Cbr-bath-41" /locus_tag="CBG_16568" /standard_name="CBG16568" /product="Protein CBR-BATH-41" /note="C. briggsae CBR-BATH-41 protein; contains similarity to Pfam domain PF00651 BTB/POZ domain contains similarity to Interpro domains IPR002083 (MATH), IPR000210 (BTB/POZ-like), IPR013069 (BTB/POZ)" /note="Predicted" /db_xref="GOA:A8XPH8" /db_xref="InterPro:IPR000210" /db_xref="InterPro:IPR002083" /db_xref="InterPro:IPR008974" /db_xref="InterPro:IPR011333" /db_xref="UniProtKB/TrEMBL:A8XPH8" /protein_id="CAP34499.2" /translation="MDGNNPQNQEQNQDIPNTSRSPVQRVPSGRAPSIVSSCSTRMTQ RNFSNYWSVETFTVQLELHQHGEYMLAPKFGDSDYEFVMKLFPNGKDEDTAGYLSLFL LINKCPNPRLRFRVSFTVETADGSRSCHLNKNLVTINRSGIVTASKFFSLDIIKSSPG VYTPNDVLTIGCQLTIFGESLTWTTNQFSPYSRKLNKSMASICGSATPDRSSSRISSS TYEGIGFHDALDTGAFSDFTVVASCGREFPTHMVVLSARSDYFRALLRNENTLEFTSK RVKFEDISAGTLEVVLRHLYKIKTEISPLEEEHLTRELVSAVDRLMIPTMRDEIADMI GRNVTAENVVTRISMADELNLQDTYHCLLELFATHKKEVLQSAPYIEMKEVNPKLALK IVEDAWSSYDDPVGTLDRRIIDRITIN" CDS complement(join(410336..410555,410605..410771, 410820..410975)) /gene="CBG16569" /locus_tag="CBG_16569" /standard_name="CBG16569" /product="Protein CBG16569" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPH9" /protein_id="CAP34500.2" /translation="MILHSRRLPHHAEWYMFAFDNNYFFVERLVKELSKFDSHLPIYT ILRDSSTRIPHKPVLILSRFAMNTFYDLQEENCSDDAESVEEWLTSCISIPPITFSID KKKKSRIFAINRHFQVDEMKSMPIGYHDDKEYIHGHSKSLLSFTNLTIDDMKLLSVFV DKVHGGSRNRIKIEKTKNYL" CDS complement(join(412619..412762,412808..413311, 413359..413459,413507..413743,413790..413907, 413953..414124,414172..415345,415395..416514, 418176..418319,418368..418507,418850..419165, 419211..419311,419358..419582,419629..419743, 421161..421350,421398..423649)) /gene="CBG16570" /locus_tag="CBG_16570" /standard_name="CBG16570" /product="Protein CBG16570" /note="contains similarity to Pfam domains PF02206 (Domain of unknown function) (2), PF00023 (Ankyrin repeat) (2), PF00533 (BRCA1 C Terminus (BRCT) domain) (2)contains similarity to Interpro domains IPR002110 (Ankyrin repeat), IPR003125 (Domain of unknown function WSN), IPR001357 (BRCT)" /note="Predicted" /db_xref="GOA:E3CU56" /db_xref="InterPro:IPR001357" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR003125" /db_xref="InterPro:IPR020683" /db_xref="InterPro:IPR036420" /db_xref="InterPro:IPR036770" /db_xref="UniProtKB/TrEMBL:E3CU56" /protein_id="CBX33074.1" /translation="MLHFPEANSLKLLYDDLSILSRVTNAIALESAALQKSVKVRDVI TELLQVHNGNFSELMKIDPSFLIETLDGLFETRKQIMGSIGQTISIEELNKLKDFAEM LVDLTADKFNYEKDLNSKDIVEKAMANTTTMVTCDKDLLTNLSDFSNFMQGNTKGGTA DLAIIKKIKSSKQEIENCVQTVSGYKETINRTTTDLSSIVGMKEILDLVLELSKPNAV MTLSTRLNKFQKIFLEILSVVKNREKTKVARMIEKTSKALKNSLIHDHTHHSHHYHLT AGFPEKEDMSRVTDDLKSDWFKQKISMGKSTKDLEAALVPFSQFADKMKVVERNWSFF QNGFVKAEKKLSSIAKKLNFVENYDYEKMDPQFFKDTETFFTDCFKRFKGHSYDADIT SFKSGYSTLNSFIESMEAISVLSVEMTDLIFTSSALSIFLDEFEEVETDKKSSSDLRD EINELTNWDTAEQVFKMFQRLKMLQDTYLRFRKESNSVNISIQNIGISSGIYETSSCL RNYKFDANRLNITVVYMEKITDLLENDTYHVLKNVLSEFAELRIALLDTEKFVKGIAS RRQRDVSKQKSPLLKLKDSVKLSNHLGNGMRILKEMIEALKLQDTLLDSTNYGETVNS VIKSKNPAQHVQQFWEGSSSKIRKMINDLKILDSSAAKYQKQDLVEIGKIFDNAAKVQ GIPEVFPYISEQLEHMNTDYQIAFQNSEKLKHLDLEFSSHKGELSAALLSLDPIKEFF DDLFGLSPKNSIVTINQSSSPTLIIIVCISVLLVLVIGALVAYGFTSSGRKSYRRLYI YYFGKQQDYEKRWRYSLFLDRSDGKNVLIDAVREINSVNLLNAVKRGAYVNVCNKFGN TSLHVATRRGYSDLVEILIKNGADRTFLNAQNKTPEQMIPENYQTTEPEKIYRYVKIE QIYNKYRNRKFKQRVPMELPTSSFHIFIDLRTDDRITNEFTACFQSITSDEVMPTTTH CIIKTGENEMLETDDMNILAWIFSGIIIVKDAWMTECIRDKKLISKDSNFLVEKVKYS GTVYDTVIQWSNAMAKGTIPYLYGVHVVIVMKECPNLLTLASIVIIQGGVVLDTFPEK GSYNKGSHPYHHKNHGPIFILHDGNTDLSFYKNDPDKMFSLFTEKEFLMFMLKRETNI DTRSKLLPILVEGDDTLESLHEVLHRQHFFIVLVPTECRNTKLKRYNLKHIVTEKNII LGSINLELIYEDLAILTRITNAISLTSAALQDTIDTINVTSELLKINAGNLTEIMSLD IDKVLPDLEKLNTESKSALQNFHEKDLEKFFPFSAMMTWTIFASIPKLKEMSAEKFLE VAKNLTSHGRACENEVINSTVGFSRAMNNHPMEDSERENMVKNFIKVIPELQDCATSI IKYHEKLFEYEIKKKNIESIWDSKNNLELFRNNSLASPTAIPGYNVVYKLFKSVVKTW SGDKIMGYRKMIKRVQGLVEYMSSSKSIEHPVFTAGFVNMADLSKVSEDVDSKWFKNA IAKGKPVDKIKTALKPFNEFASNMNALESVWKSFEETIQEILIPKVNMIKFSKFYHPQ NTPSNNMSKYLEIEETYKKLNLVIKSVTGMVTWVDETLKETNPNVKQVLEQLKTTKMD YKNEKYIHTIKTLPNYDSFKQFVGRFESLQVLQAAMITNAMMVNSGNTKLDYGVKDLV EEWDVAGKQDCLKNKKELDVQILITLTTALEYAFKFVKESNYSTIQNVLQTILKVRNQ LLSLANFVEQLEKKYDSVESVKTVLQLRNSSSLAHSLGSGMRVIQHMTEVLRLSDNLK RVMEYNDTTTKVIMASDPPMDVLKFFQNRNPSINMLVKEIDSLEKSAEDLKGKDLLRM GSVFETALKVQGIPNVFGFAYSELKKSGYASEANELKELKDLDLNFASHKGDLNAASL SLSNLRDFFDELFDLEVKPTAGVTRIISDPFNTIIGCVVVVILLGIGFILIYGLTKNG KERYKKLYLYYFGKQEDFEKRWRYSLFLDRVDITKNVICDAVREVNSQNLLAAVKSGA YINVYNKFGNTGLHVATKRGHYQLVDILIRHGADRTLLNAENKTPEQMIKVMNTTIKN EEEKEQVDKYKKVEMIYNKYRKKKFGKRVPNTFPTTSFHIYIDDRTEEKVTYKFMVKF ESITSHEPLPTTTHCIVKTDENGILESDDFNLLSWIFNGVIIVKESWMTDCLQNQNLI SKDIDYLVNTVKYNGVVYDNAILPWSLAMAKGTMPYLYGVQVAVVMKDYPNCKIDLKL NNNFASFPVFTLAAVVSNLGGFMLNQFPEKDQFNKGSHPYLHENLGPIFLLHDGTIDL SIYKNDVDKMYTLFTESEFISFLLKRNINTDQTPNPTPVVKEID" CDS complement(join(424743..425391,425438..425680, 425731..425813)) /gene="CBG16572" /locus_tag="CBG_16572" /standard_name="CBG16572" /product="Protein CBG16572" /note="contains similarity to Pfam domain PF01398 JAB1/Mov34/MPN/PAD-1 ubiquitin protease contains similarity to Interpro domains IPR000555 (Mov34/MPN/PAD-1), IPR006162 (Phosphopantetheine attachment site)" /note="Predicted" /db_xref="GOA:A8XPI1" /db_xref="InterPro:IPR000555" /db_xref="InterPro:IPR037518" /db_xref="UniProtKB/TrEMBL:A8XPI1" /protein_id="CAP34502.2" /translation="MERLLRSLLMNQNKQATDKLDHPDTSETVNISSLALLKMLRHAR SGIPLEVMGLMLGEFVDDYTINVLDVFAMPQSGTSVTVESVDPVYQTKHMDLLKLVGR TENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVKGKVMLDAFRS VNPLNLHIRPLAPTAEPRQTTSNLGHLTKPSLISVVHGLGTKYYSLNVAYKMGSNEQK MLMCLNKKSWYDQLNMRQYSELEKSQDEKFKSINKLIAVVNKEIEEDKNKPKTDSKEK PASETKSKNQEDVKKFGKVNAKHQLQMVKLSLNTNIMFHVSDHIKSSE" CDS complement(join(426152..426419,426492..426559)) /gene="CBG16573" /locus_tag="CBG_16573" /standard_name="CBG16573" /product="Protein CBG16573" /note="contains similarity to Pfam domain PF08524 rRNA processing contains similarity to Interpro domains IPR013730 (rRNA processing), IPR009149 (BR22)" /note="Predicted" /db_xref="InterPro:IPR013730" /db_xref="UniProtKB/TrEMBL:A8XPI2" /protein_id="CAP34503.1" /translation="MVKQSTAETSTNEAKQVPQKVKSKKQKKMSFAQAQDVYLRLKQE KEEEKQRERAEREKRNETIAATNKSRKKMNQALAKRNKKGQPNLNAQMDVLLEKIQKR VDKEKKGTQ" CDS join(426929..427000,427045..427183,427233..427419, 427469..427559,427592..427771,427820..427975, 428029..428405,428454..429354,429411..429602, 431764..431937,431984..432400,432447..432620) /gene="Cbr-isw-1" /locus_tag="CBG_16574" /standard_name="CBG16574" /product="Protein CBR-ISW-1" /note="C. briggsae CBR-ISW-1 protein; contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase) , PF00271 (Helicase conserved C-terminal domain) , PF09110 (HAND) , PF04851 (Type III restriction enzyme, res subunit) , PF09111 (SLIDE) , PF00176 (SNF2 family N-terminal domain) contains similarity to Interpro domains IPR015194 (ATPase, nucleosome remodelling ISWI, HAND domain), IPR011545 (DNA/RNA helicase, DEAD/DEAH box type, N-terminal), IPR006935 (Helicase/UvrB domain), IPR000330 (SNF2-related), IPR001005 (SANT domain, DNA binding), IPR015195 (SLIDE), IPR014001 (DEAD-like helicase), IPR001650 (Helicase, C-terminal)" /note="Predicted" /db_xref="GOA:A8XPI3" /db_xref="InterPro:IPR000330" /db_xref="InterPro:IPR001005" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR015194" /db_xref="InterPro:IPR015195" /db_xref="InterPro:IPR017884" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR029915" /db_xref="InterPro:IPR036306" /db_xref="InterPro:IPR038718" /db_xref="UniProtKB/TrEMBL:A8XPI3" /protein_id="CAP34504.2" /translation="MSDYGESSNEVVQEPMETDPPKVEAEESEVKMEEDNDPATSEAA DSFKRFEKLLQKTENFSHCLSSGDAKLAEAPSTSKKRGRAPKKNGVDGDHRHRKTEQE EDEEMVADADKADELVVFDKSPFYIENGEMRDYQVRGLNWLASLQHNNINGILADEMV FFKGLGKTLQTISLLGYMKHYKNQASPHLVIVPKSTLQNWLNEFNKWCPSINAHILIG DEAARNVTLRDVVLPQKFDVLCTTYEMMLKVKTQLRKLNWKYIIIDEAHRIKNEKSKL SETVRELNSQNRLLITGTPLQNNLHELWALLNFLLPDIFTSSEDFDSWFSSEAMSGNI DLVQRLHKVLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKILLKDIDVIN GAGKVEKARLMNILMHLRKCVNHPYLFDGAEPGPPYTTDQHLVDNCGKMVVLDKLLSR LQEQGSRVLIFSQFSRMLDLLEDYCWWRKYEYCRLDGSTAHVDRTSAIEAYNAPDSKK FIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVKVFRLITE NTVDDRIIEKAEAKLRLDNIVIQQGRMTEASKTLGKNDMISMIRHGAEQVFAAKDSTV SDDDIDTILSKAETRTAEFDEKMGKIDENNLRNMTFEDNTKFTLYQFEGENYKEKQAE QMGHFWIEPPKRERKANYQVDLYYKEAMRAGNPAEKQSKAPRPKLPQVSDFQFYPRRL FELLDKEIYHYRKTIGYVVSLNNKLAERPKDVPAKEAEKRQAEEQKLINNARPLTDAE QEEKAELLTQAVTDWTKREFQQFIRGNEKFGRDDLESIAKEMERPLEEIQAYAKVFWE RLDELQDSEKLVSQIEKGEARIQRKHAVKKALDAKIAKYKAPFQQLRISYGTNKGKTY TEEEDRFLVCETHRLGYDKENVFEDLRQSVRMAPQFRFDWFLKSRTAMELQRRCNTLI TLIEREMGEVAETKPVVAAAADKKKVAVKDPAKSGVPAAKKAKTSAK" CDS complement(join(<429737..430117,430162..430287, 430349..430623,430702..430894,430942..431124)) /gene="CBG16575" /locus_tag="CBG_16575" /standard_name="CBG16575" /product="Protein CBG16575" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPI4" /protein_id="CAP34505.1" /translation="MLRPPMTKLIINRDENREREKILHVGECAIVRSSSGEPWQLLNN GNSETIDYRLLQDILHQGFRLSTLYDPKSHTKSMKRIRRKLSSIFVSTNSLLPLSKGG SSSSSQPHFYLSPSNSSLCDTQKLPKSREAVIKSSLTRKVETRRQSGSFGENKMHLNL SMSTGNLCRTGVVRTPYPKSKQFQFEDDRGDEEDETDEDDSDLVSIKTRSGRRRNILK SPPPPDRVPSSVGGSEVDEKEETSLKPIPDNIKATMFKTPTLDLPVDDDSEIDADAFS IPPPTPITPGSGLFSIPSGRNGENSSRSRIASKRLGSVTSRTSSLDRRMSLSCLEDMS NYQKTQYLVFPLRDSTKKPYLLKFPEDMHEEEEKHGGSVWGSDTSLEEEIKV" CDS complement(join(433036..433151,433201..433297, 433611..434242,435047..435286,435779..436066, 436112..436285,436384..436823,436950..437003, 437208..437536,437838..437939,439165..439300, 439522..439677,439737..439818,440598..440817)) /gene="Cbr-rbf-1" /locus_tag="CBG_16576" /standard_name="CBG16576" /product="Protein CBR-RBF-1" /note="C. briggsae CBR-RBF-1 protein; contains similarity to Pfam domains PF02318 (Rabphilin-3A effector domain N-terminal) , PF00168 (C2 domain) (2)contains similarity to Interpro domains IPR003315 (Rabphilin-3A effector, zinc-binding), IPR001565 (Synaptotagmin), IPR020477 (C2 domain), IPR000008 (C2 calcium-dependent membrane targeting)" /note="Predicted" /db_xref="GOA:A8XPI5" /db_xref="InterPro:IPR000008" /db_xref="InterPro:IPR001565" /db_xref="InterPro:IPR010911" /db_xref="InterPro:IPR011011" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR017455" /db_xref="InterPro:IPR030541" /db_xref="InterPro:IPR035892" /db_xref="InterPro:IPR041282" /db_xref="UniProtKB/TrEMBL:A8XPI5" /protein_id="CAP34506.1" /translation="MFSRRTTPSPSITTASSSTFSISNLTNNNATSTSDLPTSVISNI VPQIPPTPRRVPPKIGLLRHLSGFLESKKDLMNDWEIGGTQNKWVCPSDRHLHLRAQL KSGWSVRTATARSPTNSKAQTGSITAAEQEQIQRVLAKAEESKNKEQQRIGKMVDRLE KMRRRATGNGVTHCLLCHTEFGLLAAKSYAAMCTDCRKYVCQRNCGVETTDVQSGKTE TVFLCKICSEAREVLWKKSGAWFYKEMPEFQRPDERLPYYTPVTANGSIPNAASATTP VSGTPAAGPQPMTMPSTSSCQMTTPKWASPSTSSNPVVPQISNGPASPLPNGNRRNTG NGGIEFPSSSRPSICSVLQAIDPPDRSKSPRPRIQPRWVNEKVMSSMSVDDEEKALSS SDGESFIQSGVPCRQNNQTPTATASTTTSPAPPPVSTTPTHRIESNLERFSRHSQKTP RLYSTDDEDDSSPESRPSSTRSTSPRHSLATPSSYAHDTCHETSLPDPDTRSIDSGVV QSDHSNPQQHGLTCSSSSLTPLQQQASHGDYNSGRGSPRRISNPDSVIPRVAQSASGT SLVTPPPPISSRASPDHRTSSPMNIMEHKTSSASSSSIGGTRRVGSAEPTINNHHSMH NNYNHNETKRLIHQTSRAESPLAAASSYLNSTDEESKQRTRRRDGVGRINSLQLRTSL DDVAPPAPPTSSKMNGHVVSSSEPNHQNHVPVPPTVPVVPEEEEEKTITASTESASEP GSLGSINLTLTYTSSDKKLRIHLIRAKNLKAMDSNGFSDPYVKFHLLPGNTKATKLTS KTIEKTLNPEWNEEMAYYGITEEDKEKKILRVTVLDRDRIGSDFLGETRIALKKLNDN EMKKFNLYLESALPVPVQTKEEESVERGKINVGLQYNIQQGSLFININRCVELIGMDS TGFSDPYCKVTMTPITSKAHRGKTTTKKRTLNPEWNEQLQFVVPFKDLPKKTLRIGVY DHDLGKHDDYIGGILLSTSAKEERGRQWIKCIENPGTLVEAWHRLELDS" tRNA complement(444063..444134) /gene="CBG29044" /locus_tag="CBG_29044" /standard_name="CBG29044" /product="RNA transcript CBG29044" /note="C. briggsae predicted tRNA" tRNA complement(450072..450143) /gene="CBG29103" /locus_tag="CBG_29103" /standard_name="CBG29103" /product="RNA transcript CBG29103" /note="C. briggsae predicted tRNA" CDS complement(join(457973..458376,460932..461193)) /gene="CBG16580" /locus_tag="CBG_16580" /standard_name="CBG16580" /product="Protein CBG16580" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPI6" /protein_id="CAP34507.2" /translation="MTKSTKLRHCKQKKKKPEKAEKSKTPIVITEKPSFEDVAITSST TDGLLGSTDSGGSRSKSRNRKLGGLCCCTAQTATLSPIEPTDYGGIASTNNNGMIGSL CRDSRAPSRNSRSGSSRSQQAKHQPIDPDEPSTSGTTDRRPSTHFMLDLPVVSTRCKS CLEKTSDLVLGWFDDVLMVSDIKSNLVYQSKNSQKRCYSSSKIFHRFPYLVSYLIQHF PFS" assembly_gap 471323..471332 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(476180..476731,476822..476956)) /gene="CBG16582" /locus_tag="CBG_16582" /standard_name="CBG16582" /product="Protein CBG16582" /note="Predicted" /db_xref="GOA:A8XPI7" /db_xref="UniProtKB/TrEMBL:A8XPI7" /protein_id="CAP34508.2" /translation="MLGEFVDDYTINVLDVFAMPQSGTSVTVESVDPVYQTKHIDLLK LDLDVGCLLSTSTLNNLLKLFTHGLWLSSWDPIRSVKGKVMLDAFRSVSPLNLHIHPL APTAEPRQTTSNLGHLTKPSLISVVHGLGTKYYSLNVAYKMGPNEQKMLMCLNKKSWY NQLNMRQYSELEKSQDEKFKSINKLIAVVNKEIEEVKDKPKTDSKEKPTSETKSKNQE DVKKFGKVNA" assembly_gap 476957..477172 /estimated_length=216 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(478654..478782,478832..478936) /gene="CBG25932" /locus_tag="CBG_25932" /standard_name="CBG25932" /product="Protein CBG25932" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK64" /protein_id="CAS00294.1" /translation="MKLLTLLKMMKTALIDLLGADEMGYAQKMLDEEAWKLEGGEDEV SLKTIQKKTGLSDASGHEPMGRVSSIISFLPLI" CDS complement(join(499430..499519,499581..499638, 499684..499799)) /gene="CBG25933" /locus_tag="CBG_25933" /standard_name="CBG25933" /product="Protein CBG25933" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK65" /protein_id="CAS00295.1" /translation="MEQFVKGLPYPYEEACKEIVRRRNSYESADKLVRHAIHVQLLQT YHFDQQNGILVNCKECSIHLAWKLYKSKLGVEDTDNWEAKINL" CDS join(502125..502208,502386..502454,502558..502603, 502647..502769,505335..505489,505771..505874, 506217..506373,506425..506578,506627..506949, 507000..507089,507139..507276,507323..507421, 507554..507633,508308..508335) /gene="CBG16586" /locus_tag="CBG_16586" /standard_name="CBG16586" /product="Protein CBG16586" /note="contains similarity to Pfam domains PF02793 (Hormone receptor domain) , PF00002 (7 transmembrane receptor (Secretin family)) contains similarity to Interpro domains IPR001879 (GPCR, family 2, extracellular hormone receptor domain), IPR000832 (GPCR, family 2, secretin-like), IPR017983 (GPCR, family 2, secretin-like, conserved site)" /note="Predicted" /db_xref="GOA:A8XPI8" /db_xref="InterPro:IPR000832" /db_xref="InterPro:IPR001879" /db_xref="InterPro:IPR017981" /db_xref="InterPro:IPR017983" /db_xref="InterPro:IPR036445" /db_xref="UniProtKB/TrEMBL:A8XPI8" /protein_id="CAP34509.2" /translation="MADATSPFNVSILDNSTAKLSEMVDSGWNVLASTSVQAFNGAMD VLEESYPLCKKMLDHNKLFPERDPNDTRIWCNATYDTVLCWPPTPANSSVTLQCPHMK GLDPNKNITKDCHVSGVWSGRNAAEMGPTLPGWTNFTMCYTDEVIYIMQNLNNESLTI AQEVARNARKLEFVGLGLSLVSLILAISIFSYFRRLRVFRNLLHLHLMIAMLMVVIIR LVLYIDLIFTGDIGPHTNTAEGKTINTMPILCEGMFFFLEYFKTVTFAWMFLEGVYLN NQIAFGFFREPKLLIYCIAGYGWPLLHTGFWLGVVLYKKDFKVERCLGSYYLEPEFWI LDGPRMLQLVVNLLFICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIM QTIPFAPTRDNIMVFAVWTYTASFTYMYQGLMVASIYCFTNKEVNHVLKAFYARYRLL HKSQNELRRGSRSVASHYAAKNGTSNTNAQQANNADENGKLSPFPSRSKKGSDDSTTK LMKDTVMEEEKNANNNGYGSAGEMTPLREGYEESNHATKSP" CDS complement(join(511074..511318,511368..512031, 512080..512133)) /gene="CBG16587" /locus_tag="CBG_16587" /standard_name="CBG16587" /product="Protein CBG16587" /note="contains similarity to Pfam domain PF00104 Ligand-binding domain of nuclear hormone receptor contains similarity to Interpro domain IPR000536 (Nuclear hormone receptor, ligand-binding, core)" /note="Predicted" /db_xref="GOA:A8XPI9" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR035500" /db_xref="UniProtKB/TrEMBL:A8XPI9" /protein_id="CAP34510.2" /translation="MAICQICQKGSNILSRYGILCCNACQLTHRYHCGSSIMIIDRIY NQEPNCRYCRFKRNLEIARINDPIDPVIVMLDDLSARHKHREAVFHKYHIDRLVSIEE ALRGVQTKCFAKSNQDYKLTFDERSTMNQITVIGFLKNLDMVQRLGDEQRDSTKFVRG VRFRYAILATAFRSYETKKGYLAIANGIDIFPDLTKIPDGVFDPKFLDKIRCLLVTKL SELKVTLNEFLILSMILICASEQHIDLSDNGKEFMRSQMNSYGAALSQLCMRNDPKNG PVRFVELLSVCQVVETTYQHIESFAQLFRMAVPVIQSRELIKFE" CDS join(515230..515295,515347..516013,516062..516312) /gene="Cbr-nhr-9" /locus_tag="CBG_16588" /standard_name="CBG16588" /product="Protein CBR-NHR-9" /note="C. briggsae CBR-NHR-9 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)" /note="Predicted" /db_xref="GOA:A8XPJ0" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR013088" /db_xref="InterPro:IPR035500" /db_xref="UniProtKB/TrEMBL:A8XPJ0" /protein_id="CAP34511.2" /translation="MSTPVESACAICSRPSNAFNYGVSSCNACKMFFRRAILGKSEKF CANNGNCDQNEMILACKLCRFQKCLNLGMKLNTNQYVNLSDLIESLSRRNSDRSNKLM GFQCLDDPNLAQVIEKFPALTKKSTDEKLTKSEWGFMEQLTTLEFISKFEFAQLLETN DLHVIFKATCFKTATLIKAIRSYSIKSAFIQYPDGESIVPHQLVPFCTDDFLARVQSR LIGKLVELNIKEEEFLLLTSVLVCNPAVDNLSDEGRSILTIQQKIYTSALFQYCLITY QQKGPSRFTELLSVCHVINKHIEDIGQLCFMFTFRPPTEKYKRLCAELLSS" CDS join(518246..518320,518675..519332,519380..519624) /gene="CBG16589" /locus_tag="CBG_16589" /standard_name="CBG16589" /product="Protein CBG16589" /note="contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)" /note="Predicted" /db_xref="GOA:A8XPJ1" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR013088" /db_xref="InterPro:IPR035500" /db_xref="UniProtKB/TrEMBL:A8XPJ1" /protein_id="CAP34512.1" /translation="MSPRVSLVSRPCSICNNLTDEFNYGVISCNPCKMVFRRVMKFET KFDHCLCGNKKSTSCRCCRFSACIAGGMKISCIQKYKHATLIQNLIKMDHKRNNTFFN YQMCEDLSLDQLMISGVPKIKDQGVRFTSHDWVSMEIYSTIEFMKNLDLVHILTSNDL MIFVKNAHFKCAIFFIAVRSYMAKMEFMTFPDNVDVFPEEISNVPDYSPKLLNRIRTL LISKFREFDVSIEELLLVVTIIICDPSVAGLSEFSMNVISQYQRIYSSALQAICQNKC KASWPTRFTNLLFLSNILTKTIKDLDDVVVLFKYHQPALPLRKLVKDSF" tRNA 519900..519983 /gene="CBG28430" /locus_tag="CBG_28430" /standard_name="CBG28430" /product="RNA transcript CBG28430" /note="C. briggsae predicted tRNA" CDS join(524231..524544,524622..525021) /gene="Cbr-odd-1" /locus_tag="CBG_16590" /standard_name="CBG16590" /product="Protein CBR-ODD-1" /note="C. briggsae CBR-ODD-1 protein; contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:A8XPJ2" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR036236" /db_xref="UniProtKB/TrEMBL:A8XPJ2" /protein_id="CAP34513.1" /translation="MPFPGSNSPGAPVVPSTEEVFRMLMLEQQKMVFQNFLRQQTPAP EENYQSADLVAWLNSLNLSPSSTPSPTPSVSSPSVPLPLTVENMLQFQIQAQLFKQFD TPWFLKPPHRPDHIPRTRPKKEFICKYCNRKFTKSYNLLIHERTHTDERPYPCDICQK AFRRQDHLRDHRYIHFKVKPHTCEICGKGFCQLRTLNVHRDSNHKPTQVMIAGIPFEA LRPIKKVEEEEPFIDVTTV" CDS join(526632..526728,526777..529018,529082..529262, 529313..529427,529656..529993,530038..530541, 530626..530775) /gene="CBG16592" /locus_tag="CBG_16592" /standard_name="CBG16592" /product="Protein CBG16592" /note="contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00023 (Ankyrin repeat) , PF00533 (BRCA1 C Terminus (BRCT) domain) contains similarity to Interpro domains IPR002110 (Ankyrin repeat), IPR003125 (Domain of unknown function WSN), IPR001357 (BRCT)" /note="Predicted" /db_xref="GOA:A8XPJ3" /db_xref="InterPro:IPR001357" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR003125" /db_xref="InterPro:IPR020683" /db_xref="InterPro:IPR036420" /db_xref="InterPro:IPR036770" /db_xref="UniProtKB/TrEMBL:A8XPJ3" /protein_id="CAP34514.2" /translation="MWTQTGIIFVILCIKSKQSLRTELVRDERSSGDSELLIVYNKLA TLSRIVNAIALQSSSIQKTVKIREVITELLQANTESFAIVTKNDLSKFRPELEDLETR LKSIASDYPNGKSTFDDINKIMPMLNKATNFNRFKKGIGSHVQTFLDHINDIHFKNNF IACDSTVVENAKKYYDLSDKKDIVSLYTNEDKQTVKTLKDNSDKLKMCMQNFKNYGRK VREPFDDEYETIGDILLMRQNIDKINNASELENLGNYVNTLMSMATKLESSMKQEKIT TVGKMLKRGIQHLKTIAETKNGPAHSLTAGFLEVDDLIKVSADLKSDWFKKEISRGKS TEELEKSLHGFFEFGERMVKLRERWKNFQAEFSASSDELEITAKMLIVVEDRSQHIDV DALHSLNNTVSSCYANVTLEPGNRNFTNFDIEKLVFEKMNTLVHDVQNWVDKVVLTID PDVINHFLDDLNSHTFSTKDVSEMVQEVAQLHGYKVFRNFISMFDGLEKLQKEFGDVF NTGKADNAKEEFEKVFKNLGTSNYMNFSSCLKDGKFATHSINEAMKYVAPALDTNHFE GTKKLFKQFLEMRKYLTGVEKHIKEIGQNIKPSEDNPVLKFQKSKEVSVSFSRGVSMI HEMAKAYEKKEQLLKSTKYNPVVSNIIRTNNSNDFVRTFWKNPAEKITKLLKDLTTLN EFAATVKDAEIEKMKQIFLKAKKVEGFPEVFGSVYNQLKLIQYSDGEKFGNLENAKEL SDLDLDFSSHRGYFPAASLSVGNIRTYFDDIFDLVDKPRKKRTVNAFGLVFGISIAIF IVVAIIGIVGYGLTASGRERYRKLYFYYFPKPKEFAKRWRYSLFMDRVDGKNALLEGV REIHKEHVLKAVKRGVYINVYANFPPELGNTALHLATKRAYPEIVDILIRYGADRTLL NAQNKTPEQMIPSDYRENQKEKIARFEQVEKIYKKYRKKKFRLHVPDLFPNTSFHIYI DGRTDDELTNAFTDKFQAISSDGFLPTTTHCIVKTDKEGLLETDDLKILLWIFSGVII VKDSWMTECLKNEDLINHDADFLVEKVKYKGVVYDTVTQWTTAMAKGAMPYLYGFYVA VVVPGYENSNRNLDSRKNRFIIFSVALLSNIVMMHGGVMLDKFPDKEEYNIGSRPYLH VNTSPLFVIHDGTVNLDHYKNDPDKMYTLFTEQEFIMFMLKRDVHVNPNPNPPPVAIN GLID" CDS complement(join(530893..531122,531167..531274, 531324..531836,531882..532053)) /gene="CBG16593" /locus_tag="CBG_16593" /standard_name="CBG16593" /product="Protein CBG16593" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPJ4" /protein_id="CAP34515.1" /translation="MKTAILALICLQLADSAAVFDRNYTKPYVLKKTWVQNFIKFQYI FEGNQQKPKIVPLGCSPTNVDSDDYLKPGETSIEHDFLFSCEEGEDGVLNYEATACID AYGQVMHPGEKRSLSNGTVVLHCNIYGGALKKVVERAAGCYFNETIYSEDEKWVELQV NPVDSSIDGRLMQCFRPHYSYYESHVVGCVIGKLGVLIGEFGQLLDGSYVKCVEAELG HVSLKQVSVDELQCNMDDKTFAHASQWTDEKKGANMKCNFGHIVKESCVIGNETLPIG QEVPVSRGCIFLCHPQTNVYICDNYLPEFQVVDTESEDLGPIEGNQVVVEQPDKKKSL KTVFKF" CDS complement(join(532978..533131,533180..533550, 533601..533738,533788..533961,534283..534449, 534501..534580,534726..534838)) /gene="Cbr-nhr-10" /locus_tag="CBG_16594" /standard_name="CBG16594" /product="Protein CBR-NHR-10" /note="C. briggsae CBR-NHR-10 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR001723 (Steroid hormone receptor), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XPJ5" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR001723" /db_xref="InterPro:IPR013088" /db_xref="InterPro:IPR035500" /db_xref="UniProtKB/TrEMBL:A8XPJ5" /protein_id="CAP34516.1" /translation="MTGPASANSNSSQPEECCLVCQDISTGYHYGVPSCNGCKTFFRR TIMKNQTFQCQFQKKCPVDKSVRCACRHCRFEKCLQVGMDRNAIQQNRDPIGYTKRTR RYPPVKKIEASEECSPSMVSETDRNEDTALSFLSLTEAKCCALRLSEYLPSRTLLEAV ISPCLLMDEVFMAEKAVLSPRHTISNTRFATQTDYHYWHERDWFVMIEWAKTLPVFQS LPFPDKLALLRHSAITYPSLVHVFNSPDHGPDTIVFPDGAYFDRTPEPTRPLGFNKKK YQMLDQLLKPMRTMEIDMTEFAAFKAIFFLNPDADDVDANAKKMLSDGRSAITNALYR YMVKKKGPEDAGDRFGRLLLLGTVLATMAVEMKEAVLVADFFDQIQFSTFAKQLLFGI KTESDI" CDS 537646..537690 /gene="CBG25934" /locus_tag="CBG_25934" /standard_name="CBG25934" /product="Protein CBG25934" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK66" /protein_id="CAS00296.1" /translation="MKWCKLIQRGGQPV" CDS complement(join(539161..539500,543864..543996, 544044..544137,544181..544281,544330..544510, 544559..544767,544817..544892,544938..545093)) /gene="CBG16596" /locus_tag="CBG_16596" /standard_name="CBG16596" /product="Protein CBG16596" /note="contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domain IPR001680 (WD40 repeat)" /note="Predicted" /db_xref="GOA:A8XPJ6" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:A8XPJ6" /protein_id="CAP34517.1" /translation="MSKRPVIESEKAAWHDEDDDHLVVSVPKKVKKTLKVELKRTTDE EHGELDSKEYIGRLQAAFKKRHGGTPKWADASAEDDEEGSLLKSAAGYLAKDVKLPKT TIRTTLLKDFNIGHRFNRGITSVKFHRTRPVLIVGDQGGNIQLFEVSSEVKKDHFLQS ATFTKFPIDCMEIAGQGHTVICSSTRQEYLMQYNMDTRQITQLKPPNTVPKQGVRFFA VSHDSQFLAIAGHNSHVYVLHSTSMEHITTISLPANATCIKFFPSHSCEMWIICQAGQ VVIATIGLPGSKPAQHTFTDDGAVHGTTLAISQHGDYFATGSDTGIVNVYSGHSCRDS TTPTPLFNVSNLVTSVSSIAFNSDAQLMAICSKVKENHIRLVHVASQTTFKNFPERNG KVTHASCVDFSPKGGYLAVGNDDGRLHVFNIHHFSEY" assembly_gap 542712..543036 /estimated_length=325 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(545372..545431,547778..547930,547978..548220, 548265..548564) /gene="Cbr-rpia-1" /locus_tag="CBG_16597" /standard_name="CBG16597" /product="Protein CBR-RPIA-1" /note="C. briggsae CBR-RPIA-1 protein; contains similarity to Pfam domain PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) contains similarity to Interpro domain IPR004788 (Ribose 5-phosphate isomerase, type A)" /note="Predicted" /db_xref="GOA:A8XPJ7" /db_xref="InterPro:IPR004788" /db_xref="InterPro:IPR037171" /db_xref="UniProtKB/TrEMBL:A8XPJ7" /protein_id="CAP34518.1" /translation="MVTSTAPEAELAPIEQAKKRAAFACGEKYVQSGCRLGVGSGSTV KYLVEYLKQGYQNGQLKDIICVPTSFLTKQWLIESGLPVSDLDAHPELDVCIDGADEV DGQFTCIKGGGGCLAQEKIVQTAAKHFYVIADYLKDSKHLGDRYPAVPIEVLPPASQP LLRSIPRAEGGSCQLRQATKKCGPVVTDNGNFIIDWQFEKNVSGRDWLAIQQRLANTP GIVETGLFIGCVDAVFFAYSDGSVKEIVNTKKH" CDS complement(join(549036..549263,549315..549416)) /gene="Cbr-msd-3" /locus_tag="CBG_16598" /standard_name="CBG16598" /product="Protein CBR-MSD-3" /note="C. briggsae CBR-MSD-3 protein; contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domain IPR000535 (Major sperm protein)" /note="Predicted" /db_xref="InterPro:IPR000535" /db_xref="InterPro:IPR008962" /db_xref="InterPro:IPR013783" /db_xref="UniProtKB/TrEMBL:A8XPJ8" /protein_id="CAP34519.1" /translation="MSLTADSPACTVPAAGGTSVHKLVNGGAEKMIFKIKSSNNNEYR ITPVFGFVDPSGSKDLTITRTAGAPKEDKLVIHFAVAPADATDAQAAFAAVTPAGTVT IPMSATA" CDS join(549637..549695,549743..550238,550288..550607, 550654..550741,550788..550928) /gene="CBG16599" /locus_tag="CBG_16599" /standard_name="CBG16599" /product="Protein CBG16599" /note="contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8XPJ9" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/TrEMBL:A8XPJ9" /protein_id="CAP34520.1" /translation="MPSEKEEDPMKNVTFAEGKKFGDWKIGQVLDEGGFGKVYIATNI HDPNKVAALKAESNEIEGGSAIKLEAMILNRLNEGGPAPHIPIVYQCAKRKLYCYMVM TLLGKNLRKLKSTNMVVNNGFSRGTWSRIGIQCLYALKFVHDNGFIHRDIKPQNFLLG HEKDLERARIVHILDFGLARPFATFFVREKKWIPRKARGTAEFRGTLRYTSPNVHLRK EQGRGDDVWSLLYVLIELNGGKALPWQTDSQRERVEQMKLNLPSRVVMSNMPQCMDKV MPHLETLDYYQRPDYYLVFKALWQVMENEKVTPSSKYDWETETPDKSIPPAAWENPAG TFFQSDPLGINGPPTPAEAALTTEKSGKKQKKK" CDS join(552011..552091,552138..552230,552281..552372, 552746..552885,552933..553153,553481..553778, 553847..554382,554680..554877) /gene="CBG16600" /locus_tag="CBG_16600" /standard_name="CBG16600" /product="Protein CBG16600" /note="contains similarity to Interpro domains IPR010916 (TonB box, conserved site), IPR000697 (EVH1)" /note="Predicted" /db_xref="GOA:A8XPK0" /db_xref="InterPro:IPR000697" /db_xref="InterPro:IPR011993" /db_xref="UniProtKB/TrEMBL:A8XPK0" /protein_id="CAP34521.2" /translation="MITPDLSDFLEHEEKESILRAISASDKILSSGICQYLTVEKGEW VKPKTGAAVALFVKNSSERYYRIVVIEPSSQRDWEPAVQFDFIIRDKKFETIQVHAKL LVFENDKDNEIGLHFYDSKECENFHNSICRRHSAKTENLGKPSLSEKKEKKKEKKKRT FPLIHSLFHSKVSKKVIEIGEPTDFRHVDGIKLTDGQEDLYMQVMSKLKTETPEEEET VVASSFSSTSATHRSSSSVTVTTSSLKHSQTVTAKSTDWETPRKDTYGVINKREPQNI YRFERSEQGNELEQKVKERPPELPSRSTSRHIDPSSPFIPSHRGSYRWATQPDTIPKS PPPVAQNSHQVDEFAEMKLSTGAPNRTAPPPPPANPPSLKTIQYKTPVTSSTTRREPS PSIKVSTKSAPPPPSPSVKSSSPLPPVSTKAPPPPPPPPLPPIATPSTVPPPPPPPPL SSVMNPSNDDEEDDPGSPPVRLSTVPESSTDRRSLMDQIRSTDRSKVLRKVSETPDSR QSVVSPTSGTIVDQIQSFLDARRAGINPSDSEGSDDDDDEEWSD" CDS complement(join(555117..555236,555281..555379, 555430..555515,555610..555758,555813..555955, 555997..556065,556106..556203,556250..556409, 556563..556688)) /gene="Cbr-pot-1" /locus_tag="CBG_16601" /standard_name="CBG16601" /product="Protein CBR-POT-1" /note="C. briggsae CBR-POT-1 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPK1" /protein_id="CAP34522.2" /translation="MSKAIYEYHKINELIPGPSRWNFYGKIIFMCNIADQLLLLLKDE TSSMYVYMNSKDNKEPIVGLKLRQVIRIHRGNVRRNPTTNTKEGVVQVEMAGCHFVAW PHFGDANNPISKSSKNWTKSDIDQEKINELSELGNDQPITKAEELAIQLVSHREKTRN DDTVRNWWKMSKIESEQSSARKARELSLISIGDPVEMDNEYDIDDSSFLESNAQDFLQ FVINCPGCLKKYKTVWYISDESKEECFKCKQKVQCKVAVRVKLKFETHNIYFTFPIEL VKNKECYSYIEKLIASDGTPEHVDEIHKFQETVKEALQNFCLTKIKGMVVAKSNKLKF VDIYLFNCKLLRLTR" assembly_gap 556799..556808 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(556849..556950,557242..557367,557414..557488, 557535..557763,557859..558134,558181..558356, 559609..559740) /gene="Cbr-ggtb-1" /locus_tag="CBG_16602" /standard_name="CBG16602" /product="Protein CBR-GGTB-1" /note="C. briggsae CBR-GGTB-1 protein; contains similarity to Pfam domain PF00432 Prenyltransferase and squalene oxidase repeat contains similarity to Interpro domain IPR001330 (Prenyltransferase/squalene oxidase)" /note="Predicted" /db_xref="GOA:A8XPK2" /db_xref="InterPro:IPR001330" /db_xref="InterPro:IPR008930" /db_xref="InterPro:IPR026873" /db_xref="UniProtKB/TrEMBL:A8XPK2" /protein_id="CAP34523.2" /translation="MYVYMNSKDNKEPIVGLKLRQVIRIHRGNVRRNPSFAGLLDFAR KDVDLPQSSPKKLLKGLHSNFIQQYEKDKGGYHYIMAEHLRVSGIYWCVNAMDLTKEL HRMSAVEIIDYVLSCRNKDGGYGPAPGHDSHLLHTLCAVQTLIIFDCLQKADAESICE YVKGLQQDDGSFCGDLSGEVDTRFTLCSFATCHLLGRLSALNIDSAVRFLKRCYNTDG GFGTRPGSESHSGQIYCCIGALAIAGRLDDIDRDRTAEWLAFRQCDSGGLNGRPEKLP DVCYSWWVLASLSILGRLDFIDQTSMKKFIYACQDDETGGFADRPGDCVSFFADPFHT VFGIAALSLFGDETLEEVDPIFCMTKKCLGDLRIEMF" CDS complement(join(558443..558675,558721..558818, 558863..559203,559254..559304)) /gene="CBG16603" /locus_tag="CBG_16603" /standard_name="CBG16603" /product="Protein CBG16603" /note="contains similarity to Pfam domain PF00013 KH domain contains similarity to Interpro domains IPR018111 (K Homology, type 1, subgroup), IPR004087 (K Homology)" /note="Predicted" /db_xref="GOA:A8XPK3" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR004088" /db_xref="InterPro:IPR036612" /db_xref="UniProtKB/TrEMBL:A8XPK3" /protein_id="CAP34524.2" /translation="MTNIYESNHNVNFRNAQNLLIREIQRVLDAEHLMKSLGTKTPPR RFVAGRDIEMPTPELSSITNFMKEDASLMTPSPANGSSLRRRQSFSPLTLSLIGATNC IDKEVEEEKKEQGKIQKCDKIFFPKETPTNINPIGRLIGPRGITIRQLETDLGCKLFI RGKGCTRDDSKEERLRGRAGWEHLDEPIHVLITVNADSEDSANDKMQQVKTYLQDFLE NNDSNLKRAQLMQLAVIEGTLK" CDS complement(join(559817..560198,560254..560454, 560502..560596,560794..560894,560942..561039, 561082..561437,561482..561632,562411..562619, 562716..562983,563031..563186,563233..563324, 563372..563486,563537..563649,563693..563772, 564048..564210,564257..564362,564401..564483, 564621..564676,566014..566092)) /gene="Cbr-glr-2" /locus_tag="CBG_16604" /standard_name="CBG16604" /product="Protein CBR-GLR-2" /note="C. briggsae CBR-GLR-2 protein; contains similarity to Pfam domains PF00497 (Bacterial extracellular solute-binding proteins, family 3) , PF10613 (Ligated ion channel L-glutamate- and glycine-binding site) , PF00060 (Ligand-gated ion channel) , PF01094 (Receptor family ligand binding region) contains similarity to Interpro domains IPR019594 (Glutamate receptor, L-glutamate/glycine-binding), IPR001638 (Extracellular solute-binding protein, family 3), IPR001320 (Ionotropic glutamate receptor), IPR001828 (Extracellular ligand-binding receptor), IPR001508 (NMDA receptor)" /note="Predicted" /db_xref="GOA:A8XPK4" /db_xref="InterPro:IPR001320" /db_xref="InterPro:IPR001508" /db_xref="InterPro:IPR019594" /db_xref="InterPro:IPR028082" /db_xref="UniProtKB/TrEMBL:A8XPK4" /protein_id="CAP34525.2" /translation="MNRKQCLLFILLLTTRIGETSKKFPLRAFVASTDIDNDTAHAII EMLISMSFWGQETFRNGNGHFDVEFESNHVLSVCDEMKLGYMLMLAGTNFKNYGIYED IANHMKMPLIDWEPSKSDYIANRSNIPMIFSVAPSAEQLLVDYIQYKCWRDIVYIHDG KNADRTLRTMFSYLHRKSPKYQLFVDNYVAPPDEEMFKEFLNEFHRRISTQHTLRSND SSEEIDEPTPVNVIVDLEGSYRTRAFLRALEESVLVKKEYHYVFSNFEVDESDLTGFH FSLINITIFRIFDKNDKKFLRTRAEFHDVYRGGFSNTDSIPTAAAFAHDAILVAGKAL QIAMDEHGKGIFDKSFVRHQLFNRGKKGLYCRPHEDQTETRQFESFEHGLKIAEAIKK VVLTEQDGTLTGRIQFDKVTGRRTNFSAEIVEIKPGVNSLNSIWERFQWAQDEGFLLG GEKYVQERKKDSSQTRKGILPSKPWKLRFNVVTVLVKPFVMLKRRNPGEPELKGNDRF EGYCIDLLNLLAKNITGFEYDVFISDGNKYGSRQADGSWDGMIGYLLNETADVAVAPL TITQERERAVDFSKPFMTTGISIMIKKPEKQEFNIFSFMEPLGMTIWIFTLSSYFGVS LTIFLVSWFSPYEKRIEFKRGEFTVTNEFTLYNSLWFTLAAFMQQGTDILPRAVSGRI ASSCWWFFTLIIVSSYTANLAAFLTLERMTPPIESVEDLANQNKILYGVVEGGSTAAF FEDSIVPLYKKMWNFMVSTTQKQMELEKQSISNSTSNRIFVSSYADGIEKVRTSKGKY AFLLEETTNNYESGRRPCDTMKVGQNLNTLGYGIASKIGNPLRVSLNLAILYLSEKGE LKKLENKWWYDRGQCDTGTSDGGTSSSLNLSKVAGIFYILLAGMVLSMCTALVEFLFR KNKENREKERNRMRNSRPQKPGIIASCERAKQKQHQNRRTKSEEVSTPRSTLF" CDS complement(join(567154..567328,567374..567497, 567546..567663,567714..568007,568058..569527, 569718..569918,569937..570200,570254..570566, 570617..570785,570815..570974,571398..571628, 571770..571805)) /gene="Cbr-ogt-1" /locus_tag="CBG_16605" /standard_name="CBG16605" /product="Protein CBR-OGT-1" /note="C. briggsae CBR-OGT-1 protein; contains similarity to Pfam domains PF07719 (Tetratricopeptide repeat) (3), PF00515 (Tetratricopeptide repeat) (9)contains similarity to Interpro domains IPR001440 (Tetratricopeptide TPR-1), IPR013105 (Tetratricopeptide TPR2), IPR019734 (Tetratricopeptide repeat)" /note="Predicted" /db_xref="GOA:A8XPK5" /db_xref="InterPro:IPR001440" /db_xref="InterPro:IPR011990" /db_xref="InterPro:IPR013026" /db_xref="InterPro:IPR019734" /db_xref="InterPro:IPR029489" /db_xref="InterPro:IPR037919" /db_xref="UniProtKB/TrEMBL:A8XPK5" /protein_id="CAP34526.2" /translation="MEKPSYFQSYNKNVLKVSGNRATGEQLAPGAVPAHPVLAPVIAP GGAAPVGISPASLTNGALAGVSAASMANIMQNPGFANLIHQALRNQLETQAVAQQLAA NPQYQLNGTSSAASLLLAPQAAVALPPQPTVVVNGVAETIIFLVAEHITELAHRHFQT ANYADAEKLCNSVFQTDPNNIPILLLLSAINFQVKNLEKSMQFSKLAIKVNSNCAEAY SNLGNYYKEKGHLAEALDNYKTAVKLKPEFIDAYINLAAALVSGGDLEQAVAAYFNAL RINPDLYCVRSDLGNLLKAMGRLEEAKVCYLKAIETQPQFAVAWSNLGCVFNSQGEIW LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVSAYLRALNLSGNHAVVHGNLQ GYVLDEYSTVSIILYGFRLIDLAIDTYKKAIELQPHFPDAYCNLANALKERGSVSEAE TMYLKALELCPTHADSQNNLANIKREQGKIEDATRLYLKALEIYPEFAAAHSNLASIL QQQGKLQDAILHYKEAIRISPAFADAYSNMGNTLKEMGDSSSAIACYNRAIQINPAFA DAHSNLASIHKDAGNMAEAIQSYGTALKLKPDFPDAFCNLAHCLQIICDWTDYDKRVR RLVQLVEDQLGKKRLPSVHPHHSMLYPLSHATRIAIAAKHASLCFDKVHLQMLGKTPL IHADRFSVQNGQRLKIGYVSSDFGNHPTSHLMQSIPGMHNRERVEVFCYALSVNDGTN FRSKLMAESEHFVDLSQITCYGKAAERIAQDGIHILINMNGYTKGARNEIFALRPAPI QVMWLGYPSTSGATFMDYIITDAVTSPLRLSCAFTEKLAYMPHTFFIGDHAQMLRHLT EKVVVKDKDATERDSSLIMNTANMDPILAKSEIKEQILDTEVVSGPKKELVKAEVVLP VLEVPTEPIKQMIMTGQMTMNVMEDVNVQNGLGQSQMHHKAATGEEIPNSVLLTSRAQ YQLPDDAIVFCNFNQLYKIDPPTLDMWIKILENVPKSVLWLLRFPYQGEEHIRKYCVE RGIEPSRIVFSNVAAKEEHVRRGQLADVCLDTPLCNGHTTGMDILWTGTPMVTMPLES LASRVATSQLYALGVPELVAKTRNEYVQIATRLGNDAEHLASMRAKVWMARTTSTLFD VKQYCHDMEDLLELMWKRYENGLPVDHITNNTETPFGL" CDS complement(join(574139..574250,574301..574522, 574570..574676,574725..574868,574951..575075, 575125..575353,575402..575773)) /gene="Cbr-nuo-4" /locus_tag="CBG_16606" /standard_name="CBG16606" /product="Protein CBR-NUO-4" /note="C. briggsae CBR-NUO-4 protein; contains similarity to Pfam domains PF01712 (Deoxynucleoside kinase) , PF02367 (Uncharacterised P-loop hydrolase UPF0079) contains similarity to Interpro domains IPR003442 (Uncharacterised domain UPF0079, ATPase bacteria), IPR015828 (NADH:ubiquinone oxidoreductase, 42kDa subunit), IPR002624 (Deoxynucleoside kinase)" /note="Predicted" /db_xref="GOA:A8XPK6" /db_xref="InterPro:IPR015828" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR031314" /db_xref="UniProtKB/TrEMBL:A8XPK6" /protein_id="CAP34527.1" /translation="MPGSMSKLGGLAVGLLAPARSGALSNQIRGVVHRSVLRLPPDHP DPWDYKHKGFNYIDGLKDDTQAHLHQNSKLIVIEGNIGSGKTTLAKQLADQLGFVHFP EFRMDDILIDRYGNDLRNYYSKFPARYRLPDISMFYKNPSGELSAAMQDRIFNCRFDQ YLNALAHILNTGQGVVLERTPHSDFVFANAMRDKNYIGHEYFKHYYFVRKNALPQLHF WPHLVVYLNTPTSKCLENIKRRGNTDEIATVDERYLKTIEESYKDSLREYRNHSKILA YDWTKPGDTDAVVEDIERLDLDFFEWHSGDVMEEWNTIVDSIGWNGWRQYVTNKYDAR MLAFDGIPKHEVGELYTNPRDTGHFLHVMRKEVLKSPYGYGYIAKNGDHQAGTTAWHT GHNLPEPWYEYYFREAYYDDLTSHETSLDLDSDSYDPDYVHHHH" CDS join(<575117..575312,575416..>575474) /codon_start=1 /gene="CBG16547" /locus_tag="CBG_16547" /standard_name="CBG16547" /product="Protein CBG16547" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPK7" /protein_id="CAP34528.1" /translation="ALTFMTNIVLISHCISEDEVRMWRALKNNSLSSVEDVSQCIEIL IEATVENTVLHGSRELSAWVFVRRSFPYLSIRISSIRNSGK" CDS complement(join(576088..576449,576495..576596, 577288..577366,577417..577479,577525..577707, 577756..577905)) /gene="Cbr-rnp-7" /locus_tag="CBG_16607" /standard_name="CBG16607" /product="Protein CBR-RNP-7" /note="C. briggsae CBR-RNP-7 protein; contains similarity to Pfam domain PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) contains similarity to Interpro domain IPR000504 (RNA recognition motif domain)" /note="Predicted" /db_xref="GOA:A8XPK8" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR022023" /db_xref="InterPro:IPR034143" /db_xref="InterPro:IPR035979" /db_xref="InterPro:IPR040252" /db_xref="UniProtKB/TrEMBL:A8XPK8" /protein_id="CAP34529.1" /translation="MTAFLPPNLLALFEARPPVQYLPPVQELLVDKNAKRAPMTGVAQ YVGLFEDPKDTPPKLPVVTKEQAKEEKRRQKEELLAYKVEQGIATWNPAENSRATEDP YRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHDESGKPRGYAFIEYSDKAEMHTA YKKADGIKVDGKRLVVDYERGRTQKTWLPRRLGGGKGDTRKTRESKAVIEERDMQSGY GGYDDRERDRSGSRDRRQESYRNGGGYDRDRRESSGGYRDSRGGSGGFGGGRDRQGGD RGYDRGGSRYNSGGGGSGGSYRSGGGSSGGRYGDRR" CDS complement(join(578688..578911,578958..579309, 579419..579544)) /gene="CBG16608" /locus_tag="CBG_16608" /standard_name="CBG16608" /product="Protein CBG16608" /note="contains similarity to Pfam domain PF08231 SYF2 splicing factor contains similarity to Interpro domain IPR013260 (mRNA splicing factor SYF2)" /note="Predicted" /db_xref="GOA:Q612R3" /db_xref="InterPro:IPR013260" /db_xref="UniProtKB/Swiss-Prot:Q612R3" /protein_id="CAP34530.2" /translation="MSDSEQTSSGTASSGSKMKDFNQRFRDLHKMRQKARKENHAQVV EEDRRKKLPKNFEAKKERDQWQVKELQDRKEAEDKGLDYERVRSLEMSADVTEKLEQK RKRKKNPDQGFASYEDMTLRQHTRLTAALDPDLESYKKMKECVGGDQFYPTADTLIHG NHYPTTSAMDRLVKDVHGQVKRREQYHRRRLYDPDAPIDYINEKNKKFNKKLDKYYGK YTEDIKDDLERGTAI" CDS join(580307..580396,580467..580594,580638..580868, 580918..581233,581325..581615,581678..581963, 582012..582154,582200..582421) /gene="CBG16609" /locus_tag="CBG_16609" /standard_name="CBG16609" /product="Protein CBG16609" /note="Predicted" /db_xref="InterPro:IPR041588" /db_xref="UniProtKB/TrEMBL:A8XPL0" /protein_id="CAP34531.2" /translation="MMLNSSEIIDGNMVVEGYEEIAVDDMNDMSELVVENDIVNDDED SLQYEEVVHSSDYGGMPIDQYNDIVQYKRTNVVPPSVTSRNDRSAPSHWRSRCKCFSM ADDGETLLYYNPENTSNAMPKVVVKKGEVRKVLERIHELIGHLGQKRTQMVVLRKLYW RSVRQDVKTFIASCDFCTEKKLHGRKITKAPVDITSENFDISVLVRDNATDRLEFHLV GYNEAEVREASYTRMSSYTFKETASEYRSRYSNQPPVPPTFRRQPYVKKLNNQSVGYL LPFHQRSRTMEPEFIEMYGREDYPQEMIYETVPEVDDGLMRNKEEVKQKDYQLPDAHP ITFDGTELTSKNFKTEDETSLNGSVSMSRAGPSSSSSIPSHSKQQHQRYGQKRHIDVD SDRMRGMCGFRSSERQQSPAPTTTAGLLKKRRREFPSIRGMANRFSIAIGDTDRIDNH EVNRSNPHLIEYPDPSSILRGDSLGLPPVIMAPSSNDEVCKLQIEALQRHIHLQKLQE KLIHDQYEASMRIPITRYIQQVEEVQEEQLDVEHDLNHHQVYEEEEEELSHNQTRHIR HQ" assembly_gap 582852..584906 /estimated_length=2055 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(585458..585511,585579..585725,585769..585891) /gene="CBG25148" /locus_tag="CBG_25148" /standard_name="CBG25148" /product="Protein CBG25148" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPL1" /protein_id="CAP34532.1" /translation="MKRKVSVYDSSKDKTLGQVVKGESPIWIRVAMAILRVWFFIYDC LNYLPYQLFNSPTEKLRKSERVKANWVEDRDGPIRNVQGHASETFPGKDTIDKVRQCV HNPIL" assembly_gap 586015..587014 /estimated_length=1000 /gap_type="between scaffolds" CDS join(587774..587803,587881..587942,587990..588060, 588109..588287,589742..589995,590048..590282, 590382..590531) /gene="CBG16611" /locus_tag="CBG_16611" /standard_name="CBG16611" /product="Protein CBG16611" /note="contains similarity to Interpro domain IPR007590 (CWC16 protein)" /note="Predicted" /db_xref="InterPro:IPR007590" /db_xref="UniProtKB/TrEMBL:A8XPL2" /protein_id="CAP34533.2" /translation="MTGTERKVFQKYYPPDFDPSKIPRAKGQRNRQFVQRVMTPFNMQ CNTCHEYIYKGKKFNMKRETAEGESYLGLKIFRFYFRCPNCLAEITFKTDLENCDYQN EHGATRLFEAVKLYQDQQKQADEQEAEDAKDPMKMLEKRTMQSRQEMEEMGNLEDLQE SSRTKECVDTIGFLSSTDPHLAQAQRIKMMEDEDDRMARELMGITSDGRIERRIKDYD DDEDDDKDEEKDVPGPSTWAASMLKPAIPALGMEEATNSRKRFDQKDRFAGIKLIKKV KPTEPTTSSATTSSAPTTSTTPSASKPSTSQPAPSGLSLLAGYGSDSDSE" CDS complement(join(590620..590879,592064..592148)) /gene="CBG16612" /locus_tag="CBG_16612" /standard_name="CBG16612" /product="Protein CBG16612" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XPL3" /protein_id="CAP34534.2" /translation="MHLPSIQCTQREEQILGFNNPSETAIEIVWICPDPNLYFMIESS LQTYRTVDDINKSVQDKVSGYRNAKWLVNTVNYSRTTANTAPGANRASQNLCFVQAPD EGIIVFVAAVVS" CDS complement(join(592689..592817,592866..592953, 593054..593103)) /gene="Cbr-rps-21" /locus_tag="CBG_16614" /standard_name="CBG16614" /product="Protein CBR-RPS-21" /note="C. briggsae CBR-RPS-21 protein; contains similarity to Interpro domains IPR001931 (Ribosomal protein S21e), IPR018279 (Ribosomal protein S21e, conserved site)" /note="Predicted" /db_xref="GOA:Q612Q9" /db_xref="InterPro:IPR001931" /db_xref="InterPro:IPR018279" /db_xref="InterPro:IPR038579" /db_xref="UniProtKB/Swiss-Prot:Q612Q9" /protein_id="CAP34535.1" /translation="MQNDAGQTVELYVPRKCSSSNRIIGPKDHAAVQIDFVDVDPETG RMIPGKSTRYAICGALRRMGESDDAILRLAQKDGLVPRDELKSN" CDS complement(join(594501..594708,594751..594926, 594976..595210,595265..595395,595442..595609, 595655..595719,595772..595849,595896..596007, 597093..597185,597455..597547)) /gene="Cbr-mec-14" /locus_tag="CBG_16615" /standard_name="CBG16615" /product="Protein CBR-MEC-14" /note="C. briggsae CBR-MEC-14 protein; contains similarity to Pfam domain PF00248 Aldo/keto reductase family contains similarity to Interpro domains IPR001395 (Aldo/keto reductase), IPR023210 (NADP-dependent oxidoreductase domain)" /note="Predicted" /db_xref="GOA:A8XPL5" /db_xref="InterPro:IPR023210" /db_xref="InterPro:IPR036812" /db_xref="UniProtKB/TrEMBL:A8XPL5" /protein_id="CAP34536.1" /translation="MQSHTFTRSRGVPIYMNGSVSHQRLYDRLSEPSTSRQLPRSISL APTGHRGGSSRRDRDQADNSLPPTFIPRFHDESAVRRMNYRPIPGTDIRISKIGFGAA AIGGMFGNVEDSITRIVETAIKQGINYIDTGYWYSQSRSESILGKALSKIPRKSYYIS TKVGRFELDYARTFDFRADKILESLTNSLKRLQLTYIDICYVQIHDADFAPNESIVLY ETLQALEMAKASGKIRHIGLTGYPLAKLVQLVDCCTTKIDFVMTYCKGALNNNSLGQF TSWFQTRNIAVINSGALCWGLLTEKGPPPWHPASDEIKEACLAATTYCSSKNISISKL ALDYALNFPNIVCCLVGMDSVQQVLDNLELANFSRITDVEQRVRDRIMRRYLDRLENA GWEGVDVAQYWKKLKKLGLTALATHRHSSVESLASTLNGFSLYSSNSSSELRTPRRRR PL" CDS join(599058..599069,599406..599630) /gene="CBG25935" /locus_tag="CBG_25935" /standard_name="CBG25935" /product="Protein CBG25935" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK67" /protein_id="CAS00297.1" /translation="MNRLVLDDELETLADAELEKADYNAIVMKNPKFEAIRDVDHAAN VTSFMTNPGRTKFACINKQCATTNDPWILVTNIP" CDS complement(601229..602866) /gene="CBG25936" /locus_tag="CBG_25936" /standard_name="CBG25936" /product="Protein CBG25936" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK68" /protein_id="CAS00298.1" /translation="MDSFKRYEETKLPSISSFYDKLNDKECSQKDYLYAKVVWNKMNC KNLEDYTRIYMINDVLLLADVFENFRNLSLDKYGLDPCWYYTSPGLSWDAMLKYTKVR LDTINDTEKFFMIEDGIRGGIVNAIKRYTKANNKYTSKFNPEEISNFLLYLDANNLYG WAMKQLLPHSNFVFEKQIQLSVLNISMNEVSKSQIRKYIENLNSQGKGCILEVDLEYP NELHRKHNEFPLCPEIRDFGNNIKKLCNTLENKNNYVIHYQNLLQALDLGMKLKKIKR ILKFDESNWLASYIDLNTDLRKKAKNDFEKDFFKLMNNSVFGKTMENVRNRVDVKLIF SGETELMKNGETHYISKKDRIAKLAKLPNFNRNIIINKEYFDFSEYPECHPLYNVENK KVVGKFKDELNGLIMEELIALKPKSYAYKISEETRENLKDYYEKRNQEEKENPKLSKV PKPGEENKKSKGIKKCVVKKLKVEDFRESLFNKSIVRKKQCCIRSIKQQLYTQEQEKV VFDNEETEAKLLSFKRIIIPNSYETNAYGFSPQEMIK" assembly_gap 605557..605942 /estimated_length=386 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(606076..606252,606300..606600, 606647..606735,606780..606912,606959..607041, 607087..607251,607299..607390,607436..607539, 607581..607675,607722..607787)) /gene="Cbr-exos-9" /locus_tag="CBG_16619" /standard_name="CBG16619" /product="Protein CBR-EXOS-9" /note="C. briggsae CBR-EXOS-9 protein; contains similarity to Pfam domains PF03725 (3' exoribonuclease family, domain 2) , PF01138 (3' exoribonuclease family, domain 1) contains similarity to Interpro domains IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR001247 (Exoribonuclease, phosphorolytic domain 1)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XPL6" /db_xref="InterPro:IPR001247" /db_xref="InterPro:IPR015847" /db_xref="InterPro:IPR020568" /db_xref="InterPro:IPR027408" /db_xref="InterPro:IPR033100" /db_xref="InterPro:IPR036345" /db_xref="UniProtKB/TrEMBL:A8XPL6" /protein_id="CAP34537.1" /translation="MRVPPLTTCEKEVILEALKSGKRFDFRGLEEFRGVKLVVGSEIG TAICTIGNTKVIAAVSAQIAEPSSMRPHKGVIIIDVDLSPMANVSNEHDRLGSKGMEL IRLLELIIRDSRCIDVESLCIRAGKEIWKVRVDVRILDEDGSLLDCACLAAITALQHF KRPNVTLEPHHTLIYSEYEKAPVPLNIYHMPICTTIGLLDKGQMVVIDPTEKEAACLD GSIVVACNKRREVCALHQSTNLVLSTKQIERCVKLAMSRAEALTAVVSDVIKQDQRER SAFKRPDGFSITTPSLILTSGTAAARQINAPRIQHGREPEEKMLYQPSVIVNENPLSV GSVKQEEVDEDALIAEQLSIIQNSVGGVAVSDPQSSGVSKRKKEKEMVDDLLDGICDS EEEEVKTEILGSSEPMEVVLPVVEQQKDEEDVTSWRKKKKKV" CDS complement(join(608034..608150,608197..608328, 608375..608470,608536..608655)) /gene="Cbr-pfd-5" /locus_tag="CBG_16620" /standard_name="CBG16620" /product="Protein CBR-PFD-5" /note="C. briggsae CBR-PFD-5 protein; contains similarity to Pfam domain PF02996 Prefoldin subunit contains similarity to Interpro domains IPR004127 (Prefoldin subunit), IPR011599 (Prefoldin alpha subunit)" /note="Predicted" /db_xref="GOA:A8XPL7" /db_xref="InterPro:IPR004127" /db_xref="InterPro:IPR009053" /db_xref="InterPro:IPR011599" /db_xref="UniProtKB/Swiss-Prot:A8XPL7" /protein_id="CAP34538.2" /translation="MTEEQRGVPLSELSLQQLGELQKNCEQELTFFQDSFNALKALLS RNEKSISALEDVKVGTAGHTALIPLSESLYIRAELSDPNKHMVEIGTGYFVELDREKA KGIFDRKKEHIAKQVETVEGILKEKRRTRAYISDAFQTKVQAQLANMNTQQS" CDS join(613404..613607,614105..614261,614305..614397, 614676..615143,615978..616401,616446..616676, 616760..616885,616942..617020) /gene="Cbr-dpy-31" /locus_tag="CBG_16621" /standard_name="CBG16621" /product="Protein CBR-DPY-31" /note="C. briggsae CBR-DPY-31 protein; contains similarity to Pfam domains PF00431 (CUB domain) , PF00090 (Thrombospondin type 1 domain) , PF01400 (Astacin (Peptidase family M12A)) contains similarity to Interpro domains IPR000884 (Thrombospondin, type 1 repeat), IPR017050 (Peptidase M12A, astacin, nematode), IPR001506 (Peptidase M12A, astacin), IPR006026 (Peptidase, metallopeptidase), IPR000859 (CUB), IPR013032 (EGF-like region, conserved site)" /note="Predicted" /db_xref="GOA:A8XPL8" /db_xref="InterPro:IPR000859" /db_xref="InterPro:IPR000884" /db_xref="InterPro:IPR001506" /db_xref="InterPro:IPR006026" /db_xref="InterPro:IPR013032" /db_xref="InterPro:IPR017050" /db_xref="InterPro:IPR024079" /db_xref="InterPro:IPR034035" /db_xref="InterPro:IPR035914" /db_xref="InterPro:IPR036383" /db_xref="UniProtKB/TrEMBL:A8XPL8" /protein_id="CAP34539.1" /translation="MRTPIILFGLLSLCIANSLRNLSYQDEEGPPSTAPGVRKRRMMS EEDQKVVDYYMDKLNKLADEKHPEELQQRIESPELKSWNRMRDSVFNPEEQGKFFQGD IVLFPEQAKSLYEQALVEGKSRVKRKFIGSNLRRWDASRPIVYAFDGSHTQREQRIIE LALEHWHNITCLNFERNDQANSGNRIVFTDVDGCASNVGRHPLGEEQLVSLAPECIRL GVIAHEVAHALGFWHEQSRPDRDQYVTVRWENIDKDSKGQFLKEDPDDVDNAGVPYDY GSIMHYRSKAFSKFDDLYTISTFVTDYQKTIGQRDQLSFNDIRLMNKIYCSAVCPTKL PCQRGGYTDPRRCDRCRCPDGFTGQYCEQVMPGYGATCGGRVSLTRATTKISSPGYPR EFKEGQECSWLLVAPPGHIVEFQFIGEFEMYCKVRHSLCMDYVEVRNTTDFANTGMRY CCYGTPPTRIRSATTDMVVLFRSFYRGGKGFEARARAVPEAGSWNAWSPWTACSASCG ACGSRMRTRTCPPGNACSGEPVETQVCNTQACTGMCQQKREEEGQCGGFLSLLRGVRC RQEKTVMAPCENACCPGFTLQRGRCVR" assembly_gap 618172..618898 /estimated_length=727 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 620579..620588 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 621495..621733 /estimated_length=239 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(622375..622503,622729..622912,623113..623300, 623502..623654) /gene="Cbr-rpl-6" /locus_tag="CBG_16622" /standard_name="CBG16622" /product="Protein CBR-RPL-6" /note="C. briggsae CBR-RPL-6 protein; contains similarity to Interpro domain IPR000915 (Ribosomal protein L6E)" /note="Predicted" /db_xref="GOA:A8XP60" /db_xref="InterPro:IPR000915" /db_xref="InterPro:IPR008991" /db_xref="InterPro:IPR014722" /db_xref="InterPro:IPR041997" /db_xref="UniProtKB/TrEMBL:A8XP60" /protein_id="CAP34540.1" /translation="MVGKRNLPVISRNFDLSPGVLRFSASRLRLKKGEKKPKFTVTKN AKLPRLQRDGTKFALGHAKTVPLRKALTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLL VTGPHKINGFPLRRIGQSFVIATSLKVNVSGVKIPDHINDEYFKRKSTSQKTGKNIFA SGKAEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF" CDS join(623985..624078,625923..626066,626815..626972, 627664..628178,628225..628398,628444..628603, 628651..628746) /gene="CBG16623" /locus_tag="CBG_16623" /standard_name="CBG16623" /product="Protein CBG16623" /note="contains similarity to Pfam domain PF00156 Phosphoribosyl transferase domain contains similarity to Interpro domains IPR000842 (Phosphoribosyl pyrophosphate synthetase, conserved site), IPR005946 (Ribose-phosphate diphosphokinase), IPR000836 (Phosphoribosyltransferase)" /note="Predicted" /db_xref="GOA:A8XP61" /db_xref="InterPro:IPR000836" /db_xref="InterPro:IPR000842" /db_xref="InterPro:IPR005946" /db_xref="InterPro:IPR029057" /db_xref="InterPro:IPR029099" /db_xref="InterPro:IPR037515" /db_xref="UniProtKB/TrEMBL:A8XP61" /protein_id="CAP34541.2" /translation="MFGEIRDRLFRFQKHSRNTRNEFFGTHPSLPEDILDPPAAGRSS RPTESLIDPPPTTTPSSRSVVIKPSETANQDISLLEKSVDHSHPHKDHPIHHPTPPRS FFSSSSLAVHPNVETAHSSSEEDLRMPNIKVFSGSSHPDLSTRICERLQLEVSKASLK KFSNKETNVEIGESVRGEDVYIIQSAAGEINDNLMELLIMINACKIASSCRVAAVIPA FPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEP AILKYIKESIPNWQSSVIVSPDAGGAKRVTSIADRLNVDFALIHKERKRANEVEKMTL VGSVEGKVAILVDDMADTCGTICMAADKLVEAGAEKVYAFCVHGIFSGPALTRLNASK FEAVVVTNTIPQDENMKKCPKIQCIDISMILAEAIRRTHNGESVSYLFSHVPIC" CDS join(630700..630877,633339..633440,634009..634103, 634156..634448,634492..634600,634650..634966, 635014..635189,635238..635383,635429..635557, 635602..635800,635854..635927,636306..636439, 636485..636635) /gene="CBG16624" /locus_tag="CBG_16624" /standard_name="CBG16624" /product="Protein CBG16624" /note="contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8XP62" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR020635" /db_xref="UniProtKB/TrEMBL:A8XP62" /protein_id="CAP34542.2" /translation="MRIYLYLLLFYSLTIFINGFEQRSDCVETCSHLDTSQEFGDCLK RCSRKPRRDNLGDSNLFAFPPTDVDIQTKVIMDGGKILETTISWKAEDNDRRREGFYI RYTAVNSSCQKHFPGYFTSSILPDERSLTIPAAFNGHALVIDHSCSYNLQIRAKPYPP GDDKYIIEKRHTVPDCIDKFCSCRPGDVPAIRDVSVDSEYRLNWKFEDVSEKDYQFYV DIYEKIAMPLIKKKGSEADVEEYTFRIANAESYEISAKSSKIFPNTYQYQLPFQFAPF QQYKLSIFAVDDSFCHNEDVFHIFNSTNVTSPSSTSSIEFKTLSVPEPSGSAITKTNQ IMDSSALFIFLIVLACMSPICSVLAWLVLRRRSKEKKKRNNFLRRRSLSMSRHSIIET NILYRPPNEVIGAVSEDWLIRGQDIVVGTVIGEGAFGQVFKGILRAPNGQVVPVAVKQ LKANAIDEEREEFIREIRMMQTVGRHENIVAMYGYCMCNDMQCMIMEYVPYGDLKHYL QNMRKDRETENSIDKKEFLSFASQIACGMAHLESVGTIHRDLAARNILVGTGKVLKIS DFGMSRPGVYIKMSKGVIPLRWLSPEAIKDSTYSSKSDVWAFGVLLWEIATLGGFPYN NIADKDLLVQLTDGMRLEQPSKCSEEMYVMMKSCWNLKPEERPSFLSIHEKLERIAAA ESDPPPSDPATTNNCNQF" assembly_gap 632952..633165 /estimated_length=214 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(636821..636949,637008..637290, 637335..637540,637829..637946,637992..638041)) /gene="CBG16626" /locus_tag="CBG_16626" /standard_name="CBG16626" /product="Protein CBG16626" /note="Partially confirmed by transcript evidence" /db_xref="InterPro:IPR028124" /db_xref="UniProtKB/TrEMBL:A8XP64" /protein_id="CAP34544.2" /translation="MGKHTTFDDSDSGSEEVDRKSRKKEKKAAKKEKADRSRSPHEKR DKSPKKDRHGEKSDTRRREDNDHGRRRDYGRDDRRDDRRDDRREDRREDRRDDRRDDR NNWKRDRNDRNDRRSDFQKREDKNRLSAEEIAAQRKALWGNKKPAAAQSSSVILEINV HILIKTFQTTESASTSSESVPGGKNEKLWSSAIAATGVGSSQANKFMRLMGVKNAPKP AEDVSNLSEEKNRQNKMLNDLEKQYAVARETTHMGRGTGFGFH" CDS join(638295..638403,638453..638582,638631..638729, 638777..638938,639211..639413,639461..639598, 639645..639862,639909..640207,640256..640375, 640424..640558,640611..640835,640886..641005, 641052..641517,641564..641695,641747..641925, 641969..642071) /gene="Cbr-mrps-18A" /locus_tag="CBG_16627" /standard_name="CBG16627" /product="Protein CBR-MRPS-18A" /note="C. briggsae CBR-MRPS-18A protein; contains similarity to Pfam domains PF00560 (Leucine Rich Repeat) , PF01084 (Ribosomal protein S18) contains similarity to Interpro domains IPR001611 (Leucine-rich repeat), IPR001648 (Ribosomal protein S18)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XP65" /db_xref="InterPro:IPR001611" /db_xref="InterPro:IPR001648" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR032675" /db_xref="InterPro:IPR036179" /db_xref="InterPro:IPR036870" /db_xref="UniProtKB/TrEMBL:A8XP65" /protein_id="CAP34545.2" /translation="MLRLYASNCASKIKVAVESAARLQSTAAGSTGHKFQTKEQKKDG TTYVSMERVSDSRGARKDDELCSLCTCNVPVKLSYKDVLILEQFMRDDGTVLPRQLTG LCKKQQLRLERCVMQAFWSGLFGDKYGNEADRAGYKRFNRYWKDDMSMYQLETKERHG TWFYIKRCLDTKTRIMRKLYCFVLILLQAHVILCQRNISASASGLLNLQLEKCPQVLG CRCVGGSKRDIQCFSIDETKLLELETVYGPDIRRLEIHSWKQEQLNFDIISSFKELEV LILKNDELESLNGTLKHPSLRVLSLSNSELSSDSEVCHIITLFPKLENLSLSKNYFEK FECSDVSTKLRALDLSHNEITHLGIPDSVKELNVSNNQLTSFDNISQELISLDISFNS FTSWPSDDGWTFPNLKSLFAAKLSFETGFQLDAPQLETLNIDGATLKYINFHQIKTPK LKKLSARHLLRLQNVAGSLPPTVNSVEITDTMLRTLPADFISSPTSSSNSRVSFEFTS SRLLCHKCLLKWSLPVYAQTNIRKECNLTRQEIASASCNLGVVANDTGIQYGKYEKPT AISCYSYGTPSPKISWWRFRPAEKLGSYDPKTDQISYTNVSDVMRESYSIQAGGSLLI HSPNRSHVERYVCVVENTNGTAYGIYQFRLDYLDWYGLDVFHSVFWGGLATSLIVCLI SFLLNITWILTRKSALWWIQRAERLSRVRKMVEAMEKYRVRQMESLHEKYTKRVQIVR DNYHQQVEALRVSYAAQQEKFQNYKAAQVDAVHSHLDAMRDGYNNQLGRVREYGSKRA EQLWESYERQVNRMRTFSLQHRLKMMRQYKVKQRYVNKLLESFQASSPEVQLENEEKV RAALEIPDDLGTIDGSIDTPSRLSRSSSFHSLPEYVIDEQGHVRPGIIPTTTASIRFS KPTTSSNSNGAGTSSSPSSSGPHRSPDSPPK" CDS complement(join(642770..642997,643047..643079)) /gene="CBG25937" /locus_tag="CBG_25937" /standard_name="CBG25937" /product="Protein CBG25937" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK69" /protein_id="CAS00299.1" /translation="MTHALLKTVLLLLLLIPLSLAASTRGQCLTDRNCDQHHKCVNRH CFHQREYVFKCINDLTCPDFHSCHNGVCLMEKTSSKNQKSNV" CDS complement(join(643310..643711,643986..644000)) /gene="CBG16629" /locus_tag="CBG_16629" /standard_name="CBG16629" /product="Protein CBG16629" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XP67" /protein_id="CAP34547.1" /translation="MAKILIFILLTSSSLSLAEKEINITSSEKSGNLTHPNNEIHIPN SPENDDDEIPLEVILQKTREFDDAPTRPDIPYLPLIQRCSIDADCSSESACFDGKCLN ASRFQLFPYLFQRCQSRLDCPSGNRCILKMCIPFRW" CDS complement(join(644311..644441,644489..644565, 644617..645020)) /gene="CBG16630" /locus_tag="CBG_16630" /standard_name="CBG16630" /product="Protein CBG16630" /note="Predicted" /db_xref="GOA:A8XP68" /db_xref="UniProtKB/TrEMBL:A8XP68" /protein_id="CAP34548.2" /translation="MNLMNILTPEIFYVLDKHFQQPLKNVPKVSLRFLKLFYAWISIA SIWYIVFGAWFLRGAGSWYSCMTVVLAVILSLAFFYESDGRGWKKFATLCVFCAIPRL LVSPIYAVAKVQTSNVNGTQTPDFVEAFHNISLSGFKEKHNDISMIWFVYYYNFMLIF ITIQRVSVRKALDEKKQKVYAETLVVEEAQRADVKQGTGPMHI" CDS join(645868..645905,645966..646131,646184..646376, 646436..646869,647034..647275,647319..647460) /gene="CBG16631" /locus_tag="CBG_16631" /standard_name="CBG16631" /product="Protein CBG16631" /note="contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)" /note="Predicted" /db_xref="GOA:G2J6W8" /db_xref="InterPro:IPR000242" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="InterPro:IPR029021" /db_xref="UniProtKB/TrEMBL:G2J6W8" /protein_id="CAP34549.2" /translation="MMTPTDCMRSFISQSWVEDEIDGSIRQLAGTEPQASGSSGASAA QDADEDNKADITPVEAFNAVHTEGDGLLADMHAAAMTFPYTFDKSLNNMEMNRIPHLY CFDHTRVELKAQKGTGDYYHASWVDGYNRKSAYIFAQAPFDDITEHTFWRMVGEKKPS MILVFGDVDEKQKRKVPYDISEKDFEKAFLHEFDAKKLDETEMKAKLCSTFWPDKGSK KEFDTLMIQTKDEYSETHMKTFSLSVTENKQENQTVLMHFHEWADTAQLPEYMLDMRA SIKVQYIRSSKKPGANNGPILLVCATGITKCSIYATIDIIVSRMTEEHTVGFKETMSA IKVQRYGCFRAPAAYLTAREMLMKFAVSTGVVHDTAIGDKPKPNKSKYSTIGKAQKSG FMRKKKAAQKTK" CDS join(652356..652436,652488..652592,652641..652748, 652799..652915,652967..653023) /gene="CBG25938" /locus_tag="CBG_25938" /standard_name="CBG25938" /product="Protein CBG25938" /note="Predicted" /db_xref="GOA:B6IK70" /db_xref="UniProtKB/TrEMBL:B6IK70" /protein_id="CAS00300.1" /translation="MVTVIPKIITTPYPRTRLPMYLYTLSIIVSCSLLYWNLLYCKNY DCSAEQEIRFGPKKHILQYFPVLAAPIIIFISLSWLIIAVHYSSTACIVTFNFMEMPS AVFCSMLGGVSSVIEIHFSIDVVNVEWTDQWLLSSGSSILLCLLHATIAFTLQ" CDS join(653217..653287,653337..653672,653719..653938, 653984..654049) /gene="CBG16633" /locus_tag="CBG_16633" /standard_name="CBG16633" /product="Protein CBG16633" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XP70" /protein_id="CAP34550.1" /translation="MRPLDKKILSNRNEKKDKKGTEEVGIPTVFTPVPSDECSLVEQQ FHRNLRDLPQLTSEQSSDVVTTEKTNSVPTELKKVAPENQHQYPPFYTRELTRMALIR VYFMQNLYTSFELSTDRTLLILLRFVIKGISKEIRNKFSFYVFASPYDVIWKRPRCEL MKKPPPSSMFRQILTPSQMNRTLGELFKETRTEGLDTMNIYIFIKDMDDTIAADEVSL KHKCWKYQQVVE" CDS complement(join(654884..654988,655375..655521)) /gene="CBG25939" /locus_tag="CBG_25939" /standard_name="CBG25939" /product="Protein CBG25939" /note="Predicted" /db_xref="GOA:B6IK71" /db_xref="InterPro:IPR040279" /db_xref="UniProtKB/TrEMBL:B6IK71" /protein_id="CAS00301.1" /translation="MPKQDFSYQDMLGVVAVWCSFFVIIGIITVTCVNFYCIHDHDDV TVLEKWGRRKRLGVRLGVHNRATIDEQIALKKFKSDLKD" CDS 656301..656576 /gene="CBG25940" /locus_tag="CBG_25940" /standard_name="CBG25940" /product="Protein CBG25940" /note="Predicted" /db_xref="GOA:B6IK72" /db_xref="UniProtKB/TrEMBL:B6IK72" /protein_id="CAS00302.1" /translation="MESSTAESGRKSKKTTTTEEAISAETVIIIFVFIGLFFLCCVGV SLYCFYKRKREQQIEQIANVPPTDPNQVNGGQPVAATGQPQVAIIRI" CDS join(657224..657229,657280..657483) /gene="CBG25941" /locus_tag="CBG_25941" /standard_name="CBG25941" /product="Protein CBG25941" /note="Predicted" /db_xref="GOA:B6IK73" /db_xref="UniProtKB/TrEMBL:B6IK73" /protein_id="CAS00303.1" /translation="MAKSTSTKDNAALGVIFIIVAIVVAICCSCASAIALFFVLRKKK KEPSNAVAPAPQSPAGPQIIVVQDK" assembly_gap 659730..660107 /estimated_length=378 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(660759..660824,660878..661021, 661069..661478,661529..661610,661657..661704, 661752..661824,661876..661934,662310..662827, 662872..663286,663333..663338)) /gene="CBG16636" /locus_tag="CBG_16636" /standard_name="CBG16636" /product="Protein CBG16636" /note="Predicted" /db_xref="GOA:A8XP71" /db_xref="InterPro:IPR013083" /db_xref="UniProtKB/TrEMBL:A8XP71" /protein_id="CAP34551.2" /translation="MAIFMAILGICTVAAMVIPSLIKGPPPPPPPPPTNPPPLTNPPT EKPEQTFPPLPTFAPITPAPTTEMDVTPGIILLVVVFFICISCSGVGVWWYMRKKREQ EMAKNTPGGFDDSYDMESGTMSGTSGTSGTSTFGTTATGTTRRTKTTKSGFTTGSTTG TKAKKDKKKKKKKNKKKDKTKSSHSQKSDPKIPMTMSPVLPNPEIPPGASPAAATPVP APESPAPVPPTEGNALAAAANFSPIPMTMSPVLPNPEIPPGASPAAATPVTAPESPAP VPPTEGNALAAANFPPTAPEPAAPEAPSVPAPACSKRRKHLISKMSKKEKANLSKIQT GLNSVSKLVLSSTSSTMERTEDDVGDEMDISLECDLCKKLIGGLKKLELLECGHFYCV NCTPQQLKEKHTSCFTATSPSSAFTRELSPKQIAEHDGELSQDGVGAERSNIRGSGRQ SKKIQVPKSKSGRKRKIRKKPDQQLWSFLYLAKPIVVNLPKNATYGDLLNTLHLLLGV DKKTHEIHIRTHKSSSEEAEGELSTPGEPNPVEVIDSKSRLRDLRIPRQKMAVLEVEE KKKGSAEDKSEPKKNEKEKRGIHEEMPSLSQSRAEEPKSL" assembly_gap 663762..664554 /estimated_length=793 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(664939..665048,665096..665707, 665804..666155)) /gene="CBG16638" /locus_tag="CBG_16638" /standard_name="CBG16638" /product="Protein CBG16638" /note="Predicted" /db_xref="InterPro:IPR040437" /db_xref="UniProtKB/TrEMBL:A8XP73" /protein_id="CAP34553.1" /translation="MASKTRRSMAIAKAEKEKKAIKEEEEEKEEEEEDEDDDGPPPIL EREESCGENGEDDEKEEDGGATSTRSTGEIAAEPVIGNLMEALAGVFSADSDSLAVKK RKYNVVPKQLGTRGPLPKSFLGYQNARPASVSPMLSSRTTPPTRSMTSVPAKITAAAK ESAGAEKSKYGLPPPIPPSLRGVAASLAQMNGVGSNTSLGPARLLENRKRQLNGELAI PGKRSSLEVYNGGRAGEKFNKKVPSTASSSGASTSSSTSSTTTAFDVHSMLREQSPVR MQVSVGADHQNSSRDTMQEALALAVHQKGSIMNVAKNATNHSLLIGTMVMNGLATLQA TSPEDFKNFSGDLFSLFTKYNIH" CDS complement(join(667716..667941,667985..668098, 668144..668481)) /gene="CBG16639" /locus_tag="CBG_16639" /standard_name="CBG16639" /product="Protein CBG16639" /note="Predicted" /db_xref="GOA:A8XP74" /db_xref="UniProtKB/TrEMBL:A8XP74" /protein_id="CAP34554.2" /translation="MGRKKFIENEDGTNKVIETEEVPKKKEDKEYRLRYLGQNIKAGK KSFKDQFFMSYEDGLKLIKKLRGKGKGGQLVQKKMPRHVSLPYHMSGKSAMDESINWI AQNTVGKYRNEYKGIVVAVGNVETVSAPRVIADQYAFHTDVAINQIVFIPKVGDKYEA NVKYVQEGLIVGVVMGMITIHVKLNDKTSEDQVGIDDKILVKYSNVRVKNSLCHLTGA YVKMIEK" CDS complement(join(668624..668826,668877..668966, 669013..669186,669232..669349)) /gene="CBG25942" /locus_tag="CBG_25942" /standard_name="CBG25942" /product="Protein CBG25942" /note="Predicted" /db_xref="GOA:B6IK74" /db_xref="InterPro:IPR034754" /db_xref="UniProtKB/TrEMBL:B6IK74" /protein_id="CAS00304.1" /translation="MNSFLQNNEWAQDPSFEHFWIHYDMSQRWLQQHIKATRQLCQEN GLPNDDHCQEFQEPEMTERLSRCEIRSEDVEEREEMSEEMKEFFAKTRNHRQELKEKR QAEEKQKHVESKKKGNQEEYVNIEQITVRGRVEKSADYRDASAEFLAKREKAKKDYGE EATKILSMESAIEMKFESEYARNPQLWPNIPFRF" CDS join(669531..669590,669700..669874,669923..670206) /gene="CBG16641" /locus_tag="CBG_16641" /standard_name="CBG16641" /product="Protein CBG16641" /note="contains similarity to Pfam domain PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region contains similarity to Interpro domain IPR002125 (CMP/dCMP deaminase, zinc-binding)" /note="Predicted" /db_xref="GOA:A8XP75" /db_xref="InterPro:IPR002125" /db_xref="InterPro:IPR015517" /db_xref="InterPro:IPR016193" /db_xref="UniProtKB/TrEMBL:A8XP75" /protein_id="CAP34555.2" /translation="MTTIESKSSTTASCSSESYATKSLIPLGPTGKRLDYITWHQHHM YMTRMLSEMSTSQEPNGCYIVDEDNYQIISGYSGEVASKNDSCQCAILSALRKLEKKA ISGDNFIMYITTFPSCTHCLERILHMKISKIWYWNPIDSTVDGQIKNLETNGIKCEKY QSTRTISIDFHE" CDS complement(join(672881..673131,673184..673336, 673383..674195,674244..674328,674380..674550, 675837..676001,676841..677142,682683..682806, 683096..683251)) /gene="Cbr-mig-10" /locus_tag="CBG_16642" /standard_name="CBG16642" /product="Protein CBR-MIG-10" /note="C. briggsae CBR-MIG-10 protein; contains similarity to Pfam domain PF00169 PH domain contains similarity to Interpro domains IPR001849 (Pleckstrin homology domain), IPR000159 (Ras-association)" /note="Predicted" /db_xref="GOA:A8XP76" /db_xref="InterPro:IPR000159" /db_xref="InterPro:IPR001849" /db_xref="InterPro:IPR011993" /db_xref="InterPro:IPR029071" /db_xref="InterPro:IPR039664" /db_xref="InterPro:IPR039665" /db_xref="UniProtKB/TrEMBL:A8XP76" /protein_id="CAP34556.2" /translation="MLSQSTHVLLLLIPTVHFPLIIVFLSSSCHFDLSFSLRIFTFSV RKNSEKQTTSVTMDTYDFPDPYPVQIRARPQVPPKPPIDTVRYSMNNIKESADWQLDE LLEELEALETQLNSSNGGDQLLLGLFDPHNIILFFLVLGVSGIPASSSRDNVKPVSTL PPPPPALSYHATQQQNLHHHHTSHLGGYQNGIHQMNSMTTTTSSCSSPDGDSAFGDSS STESSNNRCRNSAFSSNDSCRDSLNTPSPTQVSPRTGELNAEEAKSLKIRQALEKMKE AKIIKMLVKFFVEDGQPLQMLIDERWTVADTMKQLAEKNHIALMEDHCIVEEYPELYI KRVYEDHEKVVENITMWVQDSPNKLYFMRRPDKYTFISRPELYLLTPKTSDHMEIPPG DQWTIDVKQKFVHDYFNREPVVPPEMEGFLYLKSDGRKSWKKHYFVLRPSGLYYAPKS KKPTTKDLTCLMNLHSNQVYTGIGWEKKYKSPSPWCISIKLTALQMKRSQFIKYICAE DEMTFKKWLVALRIAKNGAELLQNFERACQIRRETLGPVSSMSAASSSTAISETPHPH QRTPSVASSIQLSSHMMNNPNTTRPLSVNVRNQSPASYSVNSSQPSQPSPSVVSQKSE VQYDEQPTGTIKRAPLDVLRRVSRASTSSPTIPQEESDSDEEFPAPPPVAAVIRMPPP VTPPKPCTPLSAKKAPPPPPKRSENTKLQSASPMAPAKNDLEAALARRREKMATMEQ" CDS complement(join(695704..695742,695878..696124, 699205..699278)) /gene="CBG16645" /locus_tag="CBG_16645" /standard_name="CBG16645" /product="Protein CBG16645" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XP78" /protein_id="CAP34558.2" /translation="MDSCEEECDLEVDSDEEEQLLGEKCISLLASLLPPSSSTLLNNA IHLELDEFEPPPPLFNLLEEQQFQEELEEDKDKENEKEFADSEKDIEESNEKELLDNE GANTVPFHCLLLMLNLL" CDS join(704317..704383,704429..704636,704681..704758, 704802..705024,705067..705154,705549..705739, 705788..705949,705992..706188,706241..706879, 707145..707199) /gene="Cbr-clec-160" /locus_tag="CBG_16647" /standard_name="CBG16647" /product="Protein CBR-CLEC-160" /note="C. briggsae CBR-CLEC-160 protein; contains similarity to Pfam domain PF00092 von Willebrand factor type A domain contains similarity to Interpro domains IPR001304 (C-type lectin), IPR002035 (von Willebrand factor, type A)" /note="Predicted" /db_xref="GOA:A8XP79" /db_xref="InterPro:IPR001304" /db_xref="InterPro:IPR002035" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="InterPro:IPR036465" /db_xref="UniProtKB/Swiss-Prot:A8XP79" /protein_id="CAP34559.1" /translation="MSVQAWTIFLAFLLFPVAVCGYECYVTPCTRDVIIVVDGSSSMQ TSTYISQEINVITKLTYSWTLDYSKVRLALVGAYFGNEFNGLDYFTDSSLVEKRLQSF RLAAMQYGLFNGDFNTTVRFLDERYVGQRANFGPRTNVQKRIVIFTSHSGEKDIASTK NTLQKFGQLGYSVTLVGIGVSEDVYKNTYYHKFVTIQWFELGSVAQSIIDTITEEGIC FLDQGWTTPKQEICTTTPTTTRAPTTTTKKSTGTVKPATTPKPVPPTHAPFPVGDYQD CSCTTQSLYIDIVFVVDVSEGMGLGGLMMVKAEINTLVGQMSLDPEIQKHVQVGLIKY SNESEIVFKPSEYTNEDEFTEDLWTDPRLEDVDEKTDEVNLHLALQQAAKMIGSMRKG VKKVVVIYAASYNDEGDDDARQIAANIRESGYEIITVAFVEPESSSLVMKIGELASPR MNFTSFRDELLVDELEDALCQVNCYCPNGWKQLVLEDRKYGECFFPTKIDASWTATKF ECPILSKEHTGNGHLVYVNSALKNTFLNKFYMDHWDPENQEKPNYDIGLSYDKATQKY IWVNGVTNNPYSNWAEGHPNLSKGECVMSKQEAGTTTDFKWNSINCQTDSGRGLCQEA ACDSDFYCPPN" CDS join(707546..707670,707939..708051,708101..708453) /gene="CBG16648" /locus_tag="CBG_16648" /standard_name="CBG16648" /product="Protein CBG16648" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XP80" /protein_id="CAP34560.1" /translation="MYQRRILEMNGKELRALTAIVLPGRKGDELKIGEMQEMCIKWLF SNGLSINHVFEIHEDVDGRVFCVMRNSEACLCCPKASESGTLKVFDNGPIGDNFKRTP SPVRKPKEQEKKKEEKEPKVKFELPSSPDPPTVSFSKPSAPTNKVAPITVQPTIVTIS DKKKKEEEEEEKKNQSSCAYCKRECGLCIVTLCSQF" CDS join(708500..708597,708648..708766,708813..708832) /gene="Cbr-mps-4" /locus_tag="CBG_16649" /standard_name="CBG16649" /product="Protein CBR-MPS-4" /note="C. briggsae CBR-MPS-4 protein; contains similarity to Interpro domain IPR020383 (Potassium channel accessory subunit protein 4, MinK-related)" /note="Predicted" /db_xref="GOA:A8XP81" /db_xref="InterPro:IPR020383" /db_xref="UniProtKB/TrEMBL:A8XP81" /protein_id="CAP34561.1" /translation="MSTPRENDNYASSSPIFKPLLHEFLKRSSSCNRISFSTQYFDFL LIVTISVFSFGAIFLILWADFLLNSVRPGSRKRT" CDS complement(join(708933..709106,709152..709277, 709325..709434,709480..709660,710026..710440, 710514..710611)) /gene="Cbr-crn-7" /locus_tag="CBG_16650" /standard_name="CBG16650" /product="Protein CBR-CRN-7" /note="C. briggsae CBR-CRN-7 protein; contains similarity to Pfam domain PF03265 Deoxyribonuclease II contains similarity to Interpro domain IPR004947 (Deoxyribonuclease II)" /note="Predicted" /db_xref="GOA:A8XP82" /db_xref="InterPro:IPR004947" /db_xref="UniProtKB/TrEMBL:A8XP82" /protein_id="CAP34562.1" /translation="MNRLLVVFIFTVIFSIGDGKFQCKNMRGKSVDWFVVYKLPKLSS GTTGKEFVYIDSESSVWTRENDINDANVAVGATISQAYSSDKTNNFAFMYSDDDPIKE ADSYRGHAKGVSLFDSTTGFWLIHSVPNFPPLTSYSYPKTAEKYGQSFFCASMEVQHL TELAEHWKYIQATPYLINLPDKFATRFPTLRNVQAKQSLPRSATQFWISKPIKTVQGV TLMAYAKHKKFDGDIWNDLISKQNKVTLAVESWLNGSGDDLHTTCTDSSQTHDVTEMR VTGLNFASSKDHSKWAVSNSQTNPIVCFGDMNRQKSQLKRGGGALCIQNRNLWQIYHS SVIQVEPCKSSFHFSFFRTSLVFLVAKFMISFF" CDS join(711079..711180,711252..711452) /gene="CBG16651" /locus_tag="CBG_16651" /standard_name="CBG16651" /product="Protein CBG16651" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XP83" /protein_id="CAP34563.1" /translation="MSKSIKKSKSKYSLDNIHQVPGLIAYMVCKGNAIVHNTFPESDN PRQVAYNAMRMATRTQGTELSDLKIHTIQVQYDDFQVELFQIGGHFCIVKKRLETD" CDS complement(join(711638..711947,711996..712103, 712153..712410,712464..712724,712775..712954, 713003..713064)) /gene="Cbr-mrps-9" /locus_tag="CBG_16652" /standard_name="CBG16652" /product="Protein CBR-MRPS-9" /note="C. briggsae CBR-MRPS-9 protein; contains similarity to Interpro domain IPR000754 (Ribosomal protein S9)" /note="Predicted" /db_xref="GOA:A8XP84" /db_xref="InterPro:IPR000754" /db_xref="InterPro:IPR014721" /db_xref="InterPro:IPR020568" /db_xref="UniProtKB/TrEMBL:A8XP84" /protein_id="CAP34564.2" /translation="MLRIALTRSSRAMSIASPSSVPDNEASVRKIGKALETYLKNSQQ HVAMMEKHRAEFETGRRHLAKMMSLDIHELDQEAIDRAIQYLFPSGLTDPKARPVMRP PDEVLPKFQRFTFDEEGKPEGTRFFTLNPKIYGLMSEIGVKTQSVMKFYDEHVGSRSV NKNDLEPANLSGSQWITADKMKKKLSEKFSNELYAQVIIALQHLASLPGSAIEQKFLS EFREPMTASTGSKLFGPAIPEVQVCAETNRRFAEVTTHCKDTRATVRVIDAGKGKFDI DGLQLHDFRHLQAREILLAPMIISQTLGRFDVEATTSCISNSLPEAPNRDPLKRSGGM SALPRAVRHGTALCVAALNPESTEPLRLSGLLTLDPRKNERSKVNQPGARAKWIWKRR " assembly_gap 713351..713432 /estimated_length=82 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(<713827..714093,714139..714252, 714296..714390,714438..714656,714700..714945, 716788..716971,717015..717125,717176..717424, 717474..717873,717924..718114,718157..718309, 718358..718570,718831..718968,719019..719279, 719327..719529,719577..719703,719750..719911, 719914..>720246)) /codon_start=1 /gene="Cbr-ncr-2" /locus_tag="CBG_16653" /standard_name="CBG16653" /product="Protein CBR-NCR-2" /note="C. briggsae CBR-NCR-2 protein; contains similarity to Pfam domains PF12349 (Sterol-sensing domain of SREBP cleavage-activation) , PF02460 (Patched family) contains similarity to Interpro domain IPR003392 (Patched)" /note="Predicted" /db_xref="GOA:A8XP85" /db_xref="InterPro:IPR000731" /db_xref="InterPro:IPR003392" /db_xref="InterPro:IPR032190" /db_xref="UniProtKB/TrEMBL:A8XP85" /protein_id="CAP34565.3" /translation="SGFQPITVTRSKNPNYIARLEKYCSHLLQEENKAQVCCTQLQLE GMTKRLSYATGILGSCPSCFDNFAKLWCQFTCSPDQSRFMKVLETSGGAKGVVEKIEF KVNRDFAEGYTSCKNTWASQNLALSFLSLGSKVSYENFYGFMGRKDPSVNIPMHTNFE FTRDKKAMNIPTTPCHKPANPQTPACGIIDCPLESYQLLDLSGMETVGVRVFEHQIKY FEWFLRLCGCFTLTMILIFALKYSCHRSPTASENCYVDFGPGSLEVQFEHLCVQYAQV VIHQPLKCVFLGLFVASLCCLGNVWFHSLTHSIDQVSAADGETRRHQKTFIETFGPTH RIEQVFMTFSPSMPENFLNQDDTNFFDEMFQLINRIQNLTVFQGVSKFTLDDICYRPL GKTKGCAIMSPTNYFQNNWNTFVNVEDNEEDFDYNEHNPFTHLKHCIFHPFTVKTPTG LSCFGEFGGPIDPALVFAGWNKNWHGTEKYTKSRTFMITILLSGKNEEKAVSWEAEFI KMMSAYEMKNASFTFMTESSVAHELQAAVETDKLVSVLACASVLLWINAMIGIYHWPE SSLLSAFIHQKLLISTSSVFISVISVWCSIGIYSFGGQHATDNAIVVLFFVITLIGIS RIFLTIRTFQSNGHCYGHPDITDREMNSRITDTMRRCIPIVLTNSLICSTCFFLAGGV LPYISVSMPAVEVFSRHAGLAILIDTAFYLLVVLPLFQYDARREMNGRCEIWPWYQLS ADTRIRLSEDAVGGTLRSPVDWFKIAIAPLILNKLCRIVILIFFSITFVSSIYWSRKL EFGFDQTMAFSKTSYLTKHFQNMNKNLNVGPPVWFVIEGDINWFDPKIQKKFCTVAGC DENSMGNTIRSLAYAENYSGNFLRGDVNIWIDSFLQFMHPRGTCCKTNGQEFCDPSNA THCSSCSANTSPLHAESEFYRYLGNFLNTPPTIHCAHGGFALAKPAINMTKNGKIQSS YFSTFFRKLNISDSNELYDAWRFAKYVAEKVEKQLQLQGVRVFVYSTFFPYYEQYDSL TTTVITLVVVILFVDLVTISLFLRVHLAGSLVSVFVLFSSYIHLMGYMYLQGISMNVV AAINMTMSLGIAVEFFGQILHGFYNSKKLKSEERAVAALVNNGATTLSGIFPAIMLTA GCLLFADSRVLITYFCIQLFGIAFVCILHGVVYMPTLLAIFGSDFYENVNSEEESSSE GSGRDETQRSSSSTSETA" CDS join(715709..715849,715958..716650) /gene="Cbr-col-91" /locus_tag="CBG_16654" /standard_name="CBG16654" /product="Protein CBR-COL-91" /note="C. briggsae CBR-COL-91 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)" /note="Predicted" /db_xref="GOA:A8XP86" /db_xref="InterPro:IPR002486" /db_xref="InterPro:IPR008160" /db_xref="UniProtKB/TrEMBL:A8XP86" /protein_id="CAP34566.1" /translation="MPSASTISVVSAISGVAVLGALLTAVVIFNDINKFYYETMETFD GFKINEKNAWDNMVMSTRSPKEMLLGRAKRQALPDCQALAKNCPPGPPGPPGAPGAAG EPGSDGDAGKPGINGVAIQFAAAAGGACIQCPAGEPGPAGAPGAPGLAGPDGKPGTDG QGGAPGPAGPEGPAGDAGAPGAPGAPGSDGQPGKDGQRSTGTPGAAGAPGPQGTAGTD GQPGAAGAPGAPGPAGAPGPDGQPGSNGQPGPDGEQGHDGQPGADAAYCPCPSRSSVR Q" assembly_gap 721887..722886 /estimated_length=1000 /gap_type="between scaffolds" CDS complement(join(725284..725318,727742..729237, 729284..729357)) /gene="CBG16655" /locus_tag="CBG_16655" /standard_name="CBG16655" /product="Protein CBG16655" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XP87" /protein_id="CAP34567.2" /translation="MLINAQTFQYYNGDFLLDMVSRNIKIPKLHKCNYHRILSSQSEI VQYEVFNPTIMEYISEAKLCKKLVSEVSMYTDFSGYEHLVEKELNNYPITLAECREMI NSKKCGFGSLTKGSSNTWSTNNKIDVDYPNRFTSFFTPKRYYKENCIVIETKVYSHYN QTKPTNIMAEMKNCKYQDGFCEIKKNEIVTWDVNREQKCQYISIGILDGMYSNKLWVN NKNQIALNFQSDKTIQDCNSSLMISDEGFAVRRINRAAAQYSPRQIPVSIPSHSQRQQ LEEDRRKREQEEQRKQQEDNRRREQEDSRKREEQSRRDQEDARRRDQERQKLNEADFE KRKQEKLKREEETEKKKQEKIKKAQDEAERKLIQQRQEEDWTVHDEKPKDNRHPPKSN RTKREITDHRAIFQPLPLPDYNEYLKIKQDCDNLPSYEAFKNSRDGCDSLTSYTNFIN SIANYEKNQQHFNLSQTWRPLPFPGYEEYLSIKEDCNILPTYEEYKTIRDSCHAFPSY TDFIKRIAKYEMFETDCEHRIGHPDD" assembly_gap 725401..725410 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 731288..731582 /estimated_length=295 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(736699..736803,737127..737359,737406..737487) /gene="CBG16657" /locus_tag="CBG_16657" /standard_name="CBG16657" /product="Protein CBG16657" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XP88" /protein_id="CAP34568.2" /translation="MEPNHPMLFICIYLSTLNFFKNTHLYFDHYSNPFKLISATVVLS SFLLTSCTLEHALEDDISDSFAPVIKGNGDVIILNLSNIDHTNGAEIPRNLTEEDTKI IPTNIDFAALKEAYAKENKAERFLPSRLFFKDEKKKK" CDS complement(join(737593..737728,737772..737872, 737922..738035,738085..738439,738491..738625, 738673..739127,739174..739215)) /gene="CBG16658" /locus_tag="CBG_16658" /standard_name="CBG16658" /product="Protein CBG16658" /note="Predicted" /db_xref="GOA:A8XP89" /db_xref="InterPro:IPR026610" /db_xref="InterPro:IPR029063" /db_xref="UniProtKB/TrEMBL:A8XP89" /protein_id="CAP34569.2" /translation="MTDVGDGWGSPYDDQTYVNAYDQLEIALLEPLDRVLPLANLEEF RPKFKNQQNPRQKKKGNSGDAEWKDAIYGFGTTDESDIDDHELRKNYFQPPLQVQRNS FVKNTLMDFKRSTQMDINRLGIMGCGEMSLERGLSEFFGVFGTINVLSVDIDQDSLSV GQQLLQKHLTQHGDILSCETGLPVLMRSYLGDILEPDHRFADLDAIVSLEVVEHIPLA DAKKFVNNVLGILLPRIFIFSTPNHEYNAVFGMKPGEFRHDDHKFEMERKEFANWLEE LSIRFPHYRIDPPHFIGMTPGYKNLSGASQAAVCRLQDDLNTTLPQEITPYESVGHVA CRLGSRMVAYNLVRQAFLEWVEKVDLCPTKLINEGFLPYWNFAISNILHHLHAPISFA STIDEKVAIKYIQGMTSHKVHMDCVNGINGIAITKSQTKTDLIATVRDNAKKI" CDS complement(join(739829..739857,740130..740208, 740262..740762,740809..741010,741058..741447, 741495..741577,741627..741740)) /gene="CBG16659" /locus_tag="CBG_16659" /standard_name="CBG16659" /product="Protein CBG16659" /note="contains similarity to Pfam domains PF12937 (F-box-like) , PF00646 (F-box domain) contains similarity to Interpro domains IPR006553 (Leucine-rich repeat, cysteine-containing subtype), IPR001810 (F-box domain, cyclin-like)" /note="Predicted" /db_xref="GOA:A8XP90" /db_xref="InterPro:IPR001611" /db_xref="InterPro:IPR001810" /db_xref="InterPro:IPR006553" /db_xref="InterPro:IPR032675" /db_xref="UniProtKB/TrEMBL:A8XP90" /protein_id="CAP34570.1" /translation="METAERRSAAAAANSRRAKRLAQQAHKTHPVIQAKQNQMYLITS RSQVQVDNSLINRVLPKEVLLKVFSFLDTKALCRSAQVCRSWNVLALDGSNWQRVDLF TFQRDVKTSVVENLARRCGGFLKELSLKGCENVHDSALRTFTSRCPNLEHLSLYRCKR VTDASCENLGRYCHKLKYLNLENCSSITDRALRYIGDGCPSLTYLNISWCDAVQDRGV QVIITSCVSLDTLILRGCEGLTENVFGPVETQMSSLKKLNMLQCFQVTDTTVRNIANG AKLIEYLCLSNCNQITDRSLIALGVNSEHLKALELSGCILLGDNGFIQLAKGCKHLER LDIEDCSLVSDITINSLANKCDALHELSLSHCELITDESIQNLATKHRDTLNVLELDN CPQLTDATLSNLRHCRALKRIDLYDCQNVSKEAIVRFQHQRANIEIHAYFAPVTPPVD PVVNRGGICRCCVIL" CDS complement(join(743851..743922,743969..744088, 744135..744503,744550..744723)) /gene="Cbr-rfs-1" /locus_tag="CBG_16660" /standard_name="CBG16660" /product="Protein CBR-RFS-1" /note="C. briggsae CBR-RFS-1 protein ;" /note="Predicted" /db_xref="GOA:A8XP91" /db_xref="InterPro:IPR013632" /db_xref="InterPro:IPR020588" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/Swiss-Prot:A8XP91" /protein_id="CAP34571.1" /translation="MDSSKITFEYETAYELLVRLGADGLFLHTSLPTLNKVLELVPGK CYELDGDIGSGKTQLCYSLAAKLLLTKKTAKIGWISAVPLRTDHLSQHISSTDADETS HLLDRIVCKRVEMVSELRDSLNALCETINMQLVIVENIDAILHDTAYDREMGRNVQID ISERLRKLTRSGITVMVTNHITYWRGYPAPALGNFWASQIENRFFVERRSEESNVRSV STMRGGNEKTIRVDFEISDGGLKAVV" CDS complement(join(745317..745628,745674..745760, 745799..745884,746274..746400,746450..746509)) /gene="CBG16661" /locus_tag="CBG_16661" /standard_name="CBG16661" /product="Protein CBG16661" /note="contains similarity to Pfam domain PF03637 Mob1/phocein family contains similarity to Interpro domain IPR005301 (Mob1/phocein)" /note="Partially confirmed by transcript evidence" /db_xref="InterPro:IPR005301" /db_xref="InterPro:IPR036703" /db_xref="UniProtKB/TrEMBL:A8XP92" /protein_id="CAP34572.2" /translation="MTAVAENRVVRRNGPGTKRADWNCWPPLAFEEMDSALNIQQYIQ QTIKANPSDVEAILTPPLDQDEGVWKYEHLRQFCIDLTDWLFCCRYQRECVPETCQQM TATEQWIFLCAAHKNPNECPAIDYTRHTLDGAATLLNSNKYFPSRVNIKEISISKLGS VARRVYRIFSHAFFHHRKLFDEFENETHLCKRFTTYVSKYNLMQQEHLIVPILPNQQQ QQTAQ" CDS join(754888..755039,755096..755453,755498..755772, 755819..755929,755976..756120) /gene="Cbr-unc-86" /locus_tag="CBG_16662" /standard_name="CBG16662" /product="Protein CBR-UNC-86" /note="C. briggsae CBR-UNC-86 protein; contains similarity to Pfam domains PF00157 (Pou domain - N-terminal to homeobox domain) , PF00046 (Homeobox domain) contains similarity to Interpro domains IPR013847 (POU), IPR000327 (POU-specific), IPR017970 (Homeobox, conserved site), IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:A8XP93" /db_xref="InterPro:IPR000327" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR010982" /db_xref="InterPro:IPR013847" /db_xref="InterPro:IPR017970" /db_xref="UniProtKB/TrEMBL:A8XP93" /protein_id="CAP34573.2" /translation="MKIIELQFNNSLFGSFDDPLLNARAAALADIDVKNVPQLTNPLM RPHDMFSYSNYFTGIPDTSAATNIYQGLPSSSEPFDASVVVPTSSEDQMTPLQQVMAM QTYGAPPQFQYNMSHMTQHFTTSSLSTSNNITRYPIAPPTSELETDPRQLETFAEHFK QRRIKLGVTQADVGKALAHLKMPGVGSLSQSTICRFESLTLSHNNMVALKPILHSWLE KAEEAMKQKDTIGDINGILPNTDKKRKRTSIAAPEKRELEQFFKQQPRPSGERIASIA DRLDLKKNVVRVWFCNQRQKQKRDFRSQFRARSAAAVMGPRVMPVVAGNGSNNNLKQG QGPYNGLPGFFD" CDS join(<759686..759928,761431..761546,761599..761706, 761827..761914,761961..762065,762106..>762276) /codon_start=1 /gene="CBG16663" /locus_tag="CBG_16663" /standard_name="CBG16663" /product="Protein CBG16663" /note="Predicted" /db_xref="GOA:A8XP94" /db_xref="InterPro:IPR001828" /db_xref="InterPro:IPR028082" /db_xref="UniProtKB/TrEMBL:A8XP94" /protein_id="CAP34574.1" /translation="INESNLLKEIGADIGAIIVDSCSTDLRSVADLYELLSGTNIQRS DLIAIIRDDSTHMPNTEQIMRQLSLPVINTFFTTHSLTQTSGTLPSMSLPIQSVVSAL RHYQSTCVNIIFDEKYAETVSEFQKVALSEGMCVEVAIHVKNSSSTVAEMVVRRLLLS EARIVVALLSEDTWIQMTKALRSEMVIAGRFVFISMQDQRWTTSRRFIESWPTFEQHL ISIAPKNPINHDEEIKKLTENIPNLSLPNLWLKQFWSSAFKCHVDNEDMGGSNSFSRF V" assembly_gap 760368..761005 /estimated_length=638 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(<762376..762541,762588..762917,763570..763784, 763827..763911,763961..>764226) /codon_start=1 /gene="CBG16664" /locus_tag="CBG_16664" /standard_name="CBG16664" /product="Protein CBG16664" /note="Predicted" /db_xref="GOA:A8XP95" /db_xref="UniProtKB/TrEMBL:A8XP95" /protein_id="CAP34575.1" /translation="ISLAAHSIGLAFRSFVDRVCPGALVISLSDCVNDPFSGFHQSIL DLDFVHHLSDIPVSFNYSTGFRDISLRINRVQFVEDRLQFSEIGVFDPIQNIYKDSSD TATPSARGSFLLMSSTCPKSTCSKELAKSTIKQQLPSIFKALTDVEIMIFTIFSVLSA LTCLMLISTEWLILSSQSATEFVSSLHGTMWRCSPGDSSEELLMLSCCLIALLSLLSF IFSVASLKHSQSLQHLMISVLAIFFETGLYVSLPLIPYKTRDFVMATTILIFAFVSLL LSHTGKTSAKEESECGGTLQKTNDNWLQHVVQSPKDQMALVQNYHTASTHPQSTMHYE KRSEGTLRRNTSLYGTEAYG" CDS complement(join(764503..764604,764649..764695, 764744..764822,764872..764949)) /gene="Cbr-snb-7" /locus_tag="CBG_16665" /standard_name="CBG16665" /product="Protein CBR-SNB-7" /note="C. briggsae CBR-SNB-7 protein; contains similarity to Interpro domain IPR001388 (Synaptobrevin)" /note="Predicted" /db_xref="GOA:A8XP96" /db_xref="InterPro:IPR001388" /db_xref="UniProtKB/TrEMBL:A8XP96" /protein_id="CAP34576.1" /translation="MDPLPPVSRIGWDEQKIMRTRSELNTVKSIMKENVQKIMERQGK LDDLVERAQKLEEASDVYVKCAVKIKREMSWKNRAIRYAIITISSVSAFAGVAYSFL" CDS join(768815..768885,768937..769126,769174..769273, 769330..769491,769546..769797,769841..769935, 770578..770745,771306..771437,771618..771737, 771789..772010,772456..772689,772740..773245, 773754..773957,774002..774698,774748..774862, 775041..775203,775255..775498,775888..775977) /gene="Cbr-unc-36" /locus_tag="CBG_16666" /standard_name="CBG16666" /product="Protein CBR-UNC-36" /note="C. briggsae CBR-UNC-36 protein; contains similarity to Pfam domains PF00092 (von Willebrand factor type A domain) , PF08399 (VWA N-terminal) , PF02743 (Cache domain) contains similarity to Interpro domains IPR004010 (Cache domain), IPR013608 (VWA N-terminal), IPR002035 (von Willebrand factor, type A)" /note="Predicted" /db_xref="GOA:A8XP97" /db_xref="InterPro:IPR002035" /db_xref="InterPro:IPR013608" /db_xref="InterPro:IPR036465" /db_xref="UniProtKB/Swiss-Prot:A8XP97" /protein_id="CAP34577.2" /translation="MRAVHLLLVLAIYITRTRSFNKESIKECAQVLSEHMKETFSKIS HETILKQNYEKLVEEEQFDPRAELKRSKHRIEDYLKVRSQFAYKAKISLEARSVKNDT SVNDPQSKSFIRFMSAKQGNDGTTIYESNHLGKKLKVNETKSFNLTQNANFYTLPTSS VSSAVHIPTPLYDRNEELLRKIDWSDIDAVYRTNREETKDLAFQLFCSEAGYMRYYPA ASWFWDNQDEHLDLFDCRNTEWYINSATNSKNVLIMLDMSGSMLGQRYEVAKQTTEAI LETLSHNDYFNIMTFSKNTFLLDGCNGTNGLLQATMRNKKALRRKMDTYQSEGKAEYE KALPLAFSVLLDLKGSYALYTKEEMSMMSGNATNDYQFHLELPEHVLAATRQYIDSIN NGGGDNNRGACENVIMLITDGAPNAYKKIFDMYNADKKVRVFTFLVGDEAIDFNEVRE MACNNRGYMVHVANMADVDEKIHHYIRRMSRVVGRHYKESGQLSWWTGVYRERLYLPR PEVFAEPVPITNQSFAVMNKMASRRKIRLQKSEARSRMFVTTVSYPVIVNETFMGVAA VNIPLTEIAQKSHPANIGAKSYFFMLDQNGFVMTHPQLRPIDPVTKYHKQNYNNMDLL ELEVGQNQNVRSSQKSQAVSDLVCESGANYAECVDDLRKAVRKMIIDCDNSDVQQLDV LYATELLDRVYPQTNTYYAECINHANFVLGLAVAKGDDYRIIKKQKKYDFGRVKMDWM GDKRWKLHPHWRYCFLNDTDTHMTKEEAFEIYAQQMSDSGKAPLLCEYRRNLVEKLLL DMEATSNLIDSWDTQYSYMKNNLIHLAFFSTPSGMIRYYNLTLQDYDYIDPYWSIFEH IGHLLSFEHAQESYNHFITDLNRKSTDDRYYRRAVRMKDTIMFDVSNNSKIWYKSETQ LTGYGLNENLTMLGQAFKAIYLDKAVLGVSGYEFAFDHVVDTMAEHGCPASDDRKWCL LLDEHAYVFFSNQNDISYEDYLVGKGKHISQYFGGLNRIAQRAMALLVENKFYTKFTY TDNQAVCKAAKQVTLSAGRLRPFYHVFQFLMQTFNFMVRLASQVSGGYLIWLPNIQFT EAYTASFHEGTDVYPCPKQSSFYFSNKDGKNRPTSTHLVTGNRSERPCKMNAKCSVKI EAAFVDGTNLVMVWITQDKASENCYDESECSMDIPSAQVPFGFEEVKNDESCENLEKR KSKANDVCYSIDDDDSEVSVTNERRPCSLSPSSLVSIVPILVGFLHFYMF" CDS complement(join(776376..776528,776574..776702, 777094..777391,777436..777631,777678..777789, 777960..778004)) /gene="CBG16667" /locus_tag="CBG_16667" /standard_name="CBG16667" /product="Protein CBG16667" /note="Predicted" /db_xref="GOA:A8XP98" /db_xref="InterPro:IPR000571" /db_xref="UniProtKB/TrEMBL:A8XP98" /protein_id="CAP34578.1" /translation="MYTIRKRKVPELPKSILRRESKKPDTPRKVGFYDDIGKPLVDYR YLPSRDSEATIDHSLYAHASGKLICHPDNVVNHVKWSLLPVKNAKKPHTGPSEMRKIE EKRLDDNNISRAPLFGTSDIFEPPNLIADANLRAQKPVPNIPLTNDFDDIPQVSEPQH TYEQVFETGPEFVAEVNEPAKPQSSSVFDLLNQLKQRGFLAPAEQQPQPFLDNTNPMP SYRPSPKFSYNGRSRGPCIHYITKPKGCLHGDRCRFEHDDIKRANYQKDLQTGTLRSD TWRYNNPRQRRTPYRNPGERQSRFDRSRSPQTVS" CDS complement(join(778239..778352,778404..778530, 778581..779455,779504..780118,780164..780458, 780506..781639,781684..782575,782622..783384, 783433..784209,784248..785385,785430..785533, 785740..785910)) /gene="CBG16668" /locus_tag="CBG_16668" /standard_name="CBG16668" /product="Protein CBG16668" /note="contains similarity to Pfam domain PF00435 Spectrin repeat contains similarity to Interpro domains IPR002017 (Spectrin repeat), IPR018159 (Spectrin/alpha-actinin)" /note="Partially confirmed by transcript evidence" /db_xref="InterPro:IPR002017" /db_xref="InterPro:IPR011992" /db_xref="InterPro:IPR018159" /db_xref="UniProtKB/TrEMBL:E3CU57" /protein_id="CBX33075.1" /translation="MLIFKSILAINTILKPSADSFSTLLHKYFCFNVVAKCRIFQVSL RSVRFCVKSVAGFGRRVHVLQKFVDFENKAINKRELLLQSCKLQLFLRSSRDFVQIVD SLIETAESIHLRHDPEHLARAQKILGRLRGEVDGKRHSVPSLEREADALLENGHYAAE DIQVSISIVNTLQNVSAVTENFYLPRSLLQKTISDVRSRWEHLLQLLKLKQLQVQTEL ESIDFGRKCSSILDWMTKTKAIEHPSKQIFDEIRKYAFIWNEISATYQQFPEPSSIDT ENFESVRDSWYDFQQYVDAIHRELDDNERLQKFVDNAEHLNIWMRDKEREIHDKYSNL NVEEAMKYRKTIDIEIKSTEQRIKDLKEQATDPNSNENFQNHPELLNQVVQVEKTFKS FQKYIQKWRSDLEFAAELDTLLKEAENIRFWCSEKVENLQVMEQSDSVDCDEIAMWIE TNNFDFKSWDSVVDQFVASAEFQKLLVNGSDEDIEKEVEKIKSLYSQTKEESKACNEL LKIRMETISLEILIYQTHQKASHLVSVLQKNEDINVLKVEDAETELRMLTGVAVRCAS VIEQIETIEYKIDQNRKQLPLLSSNANEQLEELSTMKSILESSPEERTAQLKHFLDAA HIIENCRDIRKHIETIWQSLQEGRKKRDSTQPLKEQVDSLMNEMQVLNLNDDEKIKAE DELTRAKKTLEQVEVEQDRLTKQSNARREAKKTEKFVERVHQWMEDSLKDDDETDFSS HNQNLHSYLANNKHLVSTANAYKDSIEKKRAGLTETDDYEQKCLLDGIQNALENFNEQ VLQKIDDTENRIKSSERLSELHSQNDWIRVKIRSLSVEPIWDSLLIAQKMNRRYEKDS EEIESRRKHINEVYLFFIYCVFSRFQIVTGSVSVEHQPILDEIENNWSRMKAMFDERG GILERMIKLYEYDEESNTTSEWLGEKMMYADAMEPKEDETFNKVMVKKLEALADEVES YKPKIVENHALLEDALVTPKTKDSVSQQVIKLKSALTRKQGEIESDYVALKRMVDKKL ENLRTLLQDADIIREIGDMERWIEEEGNLLNRCLAADSEELPMKIDDVMANVQRRRSN LTDIKCSAMGGGQLQTQKVDDAFDMLDIFSFEVDRIKQKASRSALFKKLKTEAEDVID AIQETQERIDSYPSLSRKNGVFQELPNLDGDLETLRRRVVASLDKAKEVRAANADLAP QVYDLEERIEKEWTDVSKAAENRKKRMERGKLFADLENELLDMEHWVDTFNEKVIVVI GDIHDALGVQVGLESIDTWREELSHRVDQLNDVKNGLASVLNTIPNQDQRNEWLERVS NIESDLVKARQTIDAKQDELSEFSHVLVAERNCERLFNWAVNKREKLELDAATCNAKT VIRKMNEVEKMMISRAGEVDELRDFLEKLKESNKPSTFKSTELGEKFERLDDEWRYLE EELKRKERDLNESMSQLLLDEQFEKIQQWIEERTELLEGEKSTENKPSDIERRQKQYE KLASEINEYLPVYEDFLTNDHIEHDKVHIIREMWSSLIETTTIHQKSLAQEVQKNRLR DLLDDIGNWLTDSETEVHSFVNFTTLYNNVDAEKASRRLKSLNEQAGEKDDLLRRVRQ DGDTKEIVEKLKAGISELKLLIKANYEDLEVWKNMQDIVKSIDDEICWYKEISVIVST TDVGHDSSSLEVIRRKHQRLLLESERRKQKVSKIVDRTTELMSGPRRPSLDSKIDEID EKLAQLTELLENNNQIAKIRTNRLEKWAEYFIVIDEIREKEHVLDQICIMKNGSQDAV LAEVERKCGLLKTIGDQMDTLKQSAEAFTNDEIIRSKAAENAVEKLRVKWLEVVNMME EKYRKLKEAMDSSKFAWKCDTANHCIRDQEEKISNLVRQQKPTSNFEVAAYHATTNFV ETYTNETIEKLTQISGQLPDPVEADRKLATVLDRLSSLKKQLELLAEKIDNDGQRKRR IQSIQDDYSKRACELGNWLEQAEEEVSDVVWFQTKESSEDCRHTLIRILELLRNDKAE LLGELELLEVELAELNEDVSTFTWHSYESLASRMERLDQTITDRVRVVDGEINRHMEN EKICEDAASCLQMCRNVILEVKKEINQLHNMKLDDQRDKLMDLIEKVQGSGMVRELEK WRSLMGSRYIFSNKFSSATPHGVLVEACHCLELMSSMLRSVEQSISERNSSGVTEKQI REFELAFEYFDRVTFFKTTELICYFQEKKGWLDYEHFELCIKSQGYDFSIETATSETM KFLDPTNSGRILKTEYMRWMVKNETTNILDDHSAIEDALKSLDARKISDSMSRKEAEF FMRKIAMHTETFTEHVHLEYKDFVDSFY" CDS complement(785984..786169) /gene="CBG25943" /locus_tag="CBG_25943" /standard_name="CBG25943" /product="Protein CBG25943" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK75" /protein_id="CAS00305.1" /translation="MILLLFYPFYLYLPPCFLYFPRIFSLRFLDPETVFLGEKKNSHV KFIIIINKLTNLFTDIF" CDS complement(join(786350..786598,786639..786644)) /gene="CBG25944" /locus_tag="CBG_25944" /standard_name="CBG25944" /product="Protein CBG25944" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK76" /protein_id="CAS00306.1" /translation="MNTCKTRIRSASLAREIRNCELLREREIARRDNASICERKARQA FMQDKPRRVPKISCKTCKNSRSCRTPLLARGNSSNYLPQD" CDS complement(join(787719..787801,787934..788135)) /gene="CBG25945" /locus_tag="CBG_25945" /standard_name="CBG25945" /product="Protein CBG25945" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK77" /protein_id="CAS00307.1" /translation="MSIRTPPESRDNRARPDGEVEPIQLSMDSLYPGFRTPNEVRLET NKQLTVNSLTDISKRKNFKNTSNFTLETKIPIIAIVTVTIRVSPREKFLA" CDS complement(join(790007..790159,790248..790314, 790373..790569,790666..790848)) /gene="CBG16669" /locus_tag="CBG_16669" /standard_name="CBG16669" /product="Protein CBG16669" /note="contains similarity to Interpro domains IPR002048 (Calcium-binding EF-hand), IPR018247 (EF-Hand 1, calcium-binding site)" /note="Predicted" /db_xref="GOA:A8XPA0" /db_xref="InterPro:IPR002048" /db_xref="InterPro:IPR011992" /db_xref="InterPro:IPR018247" /db_xref="UniProtKB/TrEMBL:A8XPA0" /protein_id="CAP34580.2" /translation="MPVAKDNQFWDALMENKVAKKLIKKHKCKAKCENIDELAKRYEV SKQEVEKVNKSFFMSEEVFKIFQLMDDDGSGTISSSEVAKMLNELGIDVSPKVVQAVM RRAMSVETVKLTLRNFLQRLLLKLSTVKADVELMLSKIDNNPEKVVSITAEELVVAWS ETVSTNITVKEAFALIQQADTQGRGKATIHEFITMCQTV" CDS complement(join(795072..795253,796008..796029)) /gene="CBG25946" /locus_tag="CBG_25946" /standard_name="CBG25946" /product="Protein CBG25946" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK78" /protein_id="CAS00308.1" /translation="MIAITTTYEFKIQTYDLKNRVCNFRLDGRNESVDLFEIDFSLQH RMTQNYPTEKKTSISSYISILKA" CDS complement(join(796334..796581,796913..796979, 797319..797516,798009..798383,798430..800077, 800156..800628,800684..801685,801894..803310, 803359..803772,803838..804102,804149..804368, 804546..804783,804830..805659)) /gene="Cbr-prp-8" /locus_tag="CBG_16670" /standard_name="CBG16670" /product="Protein CBR-PRP-8" /note="C. briggsae CBR-PRP-8 protein; contains similarity to Pfam domains PF10597 (U5-snRNA binding site 2 of PrP8) , PF12134 (PRP8 domain IV core) , PF10598 (RNA recognition motif of the spliceosomal PrP8) , PF10596 (U6-snRNA interacting domain of PrP8) , PF08083 (PROCN (NUC071) domain) (2), PF08082 (PRO8NT (NUC069), PrP8 N-terminal domain) , PF01398 (JAB1/Mov34/MPN/PAD-1 ubiquitin protease) , PF08084 (PROCT (NUC072) domain) contains similarity to Interpro domains IPR000555 (Mov34/MPN/PAD-1), IPR019581 (Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding), IPR012591 (Pre-mRNA-processing-splicing factor 8), IPR019580 (Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding), IPR021983 (PRP8 domain IV core), IPR012984 (PRO, C-terminal), IPR012592 (PROCN), IPR019582 (RNA recognition motif, spliceosomal PrP8)" /note="Predicted" /db_xref="GOA:A8XPA1" /db_xref="InterPro:IPR000555" /db_xref="InterPro:IPR012337" /db_xref="InterPro:IPR012591" /db_xref="InterPro:IPR012592" /db_xref="InterPro:IPR012984" /db_xref="InterPro:IPR019580" /db_xref="InterPro:IPR019581" /db_xref="InterPro:IPR019582" /db_xref="InterPro:IPR021983" /db_xref="InterPro:IPR027652" /db_xref="InterPro:IPR037518" /db_xref="InterPro:IPR042516" /db_xref="UniProtKB/TrEMBL:A8XPA1" /protein_id="CAP34581.2" /translation="MADHGGPPQTEPHAIPDSILEEKSRKWKQLQGKRYSEKKKFGMA DTQKEEMPPEHVRKVIRDHGDMTSRKYRHDKRVYLGALKYMPHAVLKLLENMPMPWEQ IRDVKVLYHITGAITFVNDIPRVIEPVYMAQWGTMWIMMRREKRDRRHFKRMRFPPFD DEEPPLDYADNILDVEPLEPIQMELDPEEDGAVAEWFYDHKPLATTRFVNGPTYRKWA FSIPQMSTLYRLANQLLTDLVDDNYFYLFDMKSFFTAKALNVAIPGGPKFEPLVKDLH TDEDWNEFNDINKVIIRAPIRTEYRIAFPFMYNNLISSLPVQVSWYHTPSVVFIKTED PDLPAFYYDPLINPIVLSNLKATEENLPEGEEDDDWALPEDVRPIFEDVPLYSDNTAN GLALLWAPRPFNLRSGRTRRAVDVPLVKSWYREHCPAGMPVKVRVSYQKLLKVFVLNA LKHRPPKPQKRRYLFRSFKATKFFQTTTLDWVEAGLQVLRQGYNMLNLLIHRKNLNYL HLDYNFNLSQEILRLTKLVVDAHVQYRLNNVDAYQLADGLQYIFAHVGQLTGMYRYKY KLMRQVRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFLRGITPLLERWLGN LLSRQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPDGIKQNKARVILQH LSEAWRCWKANIPWKVPGLPTPVENMILRYVKAKADWWTNSAHYNRERVRRGATVDKT VCKKNLGRLTRLYLKSEQERQHNYLKDGPYISAEEAVAIYTTTVHWLESRRFSPIPFP PLSYKHDTKLLILALERLKESYSVKNRLNQSQREELALIEQAYDNPHEALSRIKRHML TQRAFKEVGIEFMDLYTHLIPVYDIEPLEKVTDAYLDQYLWYEADKRRLFPSWVKPGD TEPPPLLTYKWCQGLNNLQDVWETSEGECNVIMETKLEKIAEKMDLTLLNRLLRLIVD HNIADYMTSKNNVLINYKDMNHTNSFGIIRGLQFASFIVQFYGLVLDLLVLGLRRASE IAGPPQCPNEFLQFQDVATEIGHPIRLYCRYIDRVWIMFRFSADEARDLIQRYLTEHP DPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSITTVEWENSFVS VYSKDNPNMLFDMSGFECRILPKCRTANEEFVHRDGVWNLQNEVTKERTAQCFLKVDE ESLSKFHNRIRQILMSSGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCE NKIQTRIKIGLNSKMPSRFPPVVFYTPKEIGGLGMLSMGHVLIPQSDLRWMQQTEAGG VTHFRSGMSHDEDQLIPNLYRYIQPWEAEFVDSVRVWAEYALKRQEANAQNRRLTLED LDDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTEFKAYQILKQNPFWWTHQRHDGKLW NLNNYRTDMIQALGGVEGILEHTLFRGTYFPTWEGLFWERASGFEESMKFKKLTNAQR SGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHL WQKIHESVVMDLCQVFDQELDALEIQTVQKETIHPRKSYKMNSSCADVLLFAQYKWNV SRPSLMADSKDVMDNTTTQKYWLDVQLRWGDYDSHDVERYARAKFLDYTTDNMSIYPS PTGVLIAIDLAYNLYSAYGNWFPGMKPLIRQAMAKIIKANPAFYVLRERIRKGLQLYS SEPTEPYLTSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPR TGQLFLKIIHTSVWAGQKRLSQLAKWKTAEEVAALIRSLPVEEQPRQIIVTRKAMLDP LEVHLLDFPNIVIKGSELMLPFQAIMKVEKFGDLILKATEPQMVLFNLYDDWLKTISS YTAFSRVVLIMRGMHINPDKTKVILKPDKTTITEPHHIWPTLSDEDWIKVELALKDMI LADYGKKNNVNVASLTQSEVRDIILGMEISAPSQQRQQIADIEKQTKEQSQVTATTTR TVNKHGDEIITATTSNYETASFASRTEWRVRAISSTNLHLRTQHIYVNSDDVKDTGYT YILPKNILKKFITISDLRTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPT QLPDHELLRDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNITWDGEKTVMITCSFT PGSVSLTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNG VWNYNFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKVIINLSVDHQEPRHWKN DDLGQTKRQENEQMSAVVVAEKLRISMRIASSFFLYCKNAFLFRPHAAIPLFFITWKI SRAASRSSFKALPQKHYGKYGSIPTPEISVALSHKLQYPWERETSKLPKPLSFPNSFY FVFVQRIPQNSFFCLTLSSSLPINHVFRQHLSFSTSSASDSF" CDS complement(join(806297..806468,807704..807915)) /gene="CBG25947" /locus_tag="CBG_25947" /standard_name="CBG25947" /product="Protein CBG25947" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK79" /protein_id="CAS00309.1" /translation="MCLFPTWITQSVKSSSSHMFRLLARTTTSGRSSGSSVDTSSSIT GSTEIFDPGGKYSTSQIRKRVPSERSAHSRESPENENEVLNSIAIFEKKTKYMSKKWF RNKKYEKILRKQCFHQQVEVFKRLN" CDS join(807965..808118,808200..808534) /gene="Cbr-bath-42" /locus_tag="CBG_16671" /standard_name="CBG16671" /product="Protein CBR-BATH-42" /note="C. briggsae CBR-BATH-42 protein ;" /note="Predicted" /db_xref="InterPro:IPR000210" /db_xref="InterPro:IPR011333" /db_xref="UniProtKB/TrEMBL:A8XPA2" /protein_id="CAP34582.2" /translation="MFSSPTMLEAQNGEIHMQDAKYDSVRAMVEFMYTGATESLDQGN IDEILAIADKYEVLMLKDQCERLIAQTINLKNVTQVAMFSDTYTADYLKSAVIRFLMT HHRVVIKTQDWINLKKSRHELANELLEAVLTTDQDDDDTSMSASQVSSPPSRKRVRRS AK" CDS join(809041..809325,809379..809590,810778..810875, 810919..811169,811217..811366,811409..811609) /gene="Cbr-cil-1" /locus_tag="CBG_16672" /standard_name="CBG16672" /product="Protein CBR-CIL-1" /note="C. briggsae CBR-CIL-1 protein; contains similarity to Pfam domain PF03372 Endonuclease/Exonuclease/phosphatase family contains similarity to Interpro domains IPR000300 (Inositol polyphosphate-related phosphatase), IPR005135 (Endonuclease/exonuclease/phosphatase)" /note="Predicted" /db_xref="GOA:A8XPA3" /db_xref="InterPro:IPR000300" /db_xref="InterPro:IPR005135" /db_xref="InterPro:IPR036691" /db_xref="InterPro:IPR041611" /db_xref="UniProtKB/TrEMBL:A8XPA3" /protein_id="CAP34583.1" /translation="MDWKITIFTYNLAMRPSYPEAVHNFLNGNVDEHTHLVAIGLQEV AHAETIGGAMITWAQSIAAWMNKNTRMVLLAKTFQATNQVLIFGRKQLIGQIKRIDYR FQRNTMRGLTGHKGSIGIRLQLTSPYSIVFVDSHFVHGPENNSKRIEQYHTNRICSFP EDKSVRAAFWFGDFNFRVEEDLETVIGKIKNGTHLELLDSRDQLKRAIIERDAFIGFH EQPITFEPTYRMTVGTTEPDGKRVPSWTDRVLYKGDGITEISYCNNKRAVASDHLPVI ASFKVAATVAPKPQWEVVFEHLPTWYRSIPLVGRFQVNSQFYKENGSYRDWIGVFPAT IDDCTTAIHWIYAATCFEQIIEGEKFLACEFADIPVGNYRLGYFASHLNCLVGLSKVF QIVDQP" CDS complement(810046..810342) /gene="CBG25948" /locus_tag="CBG_25948" /standard_name="CBG25948" /product="Protein CBG25948" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK80" /protein_id="CAS00310.1" /translation="MKAYVKAPKRRSSSKSTSLRSRSTSRSQKDVPTTSAKPTAAEGR MKKTTVPKRRDSMRGPSTTLILRTKGAVTRSQFKLREELGMNKETKKPGASRSV" CDS join(813133..813207,813260..813625,813674..813822, 813869..814266,814283..814437,814484..814621, 814674..814748) /gene="Cbr-atg-13" /locus_tag="CBG_16674" /standard_name="CBG16674" /product="Protein CBR-ATG-13" /note="C. briggsae CBR-ATG-13 protein; contains similarity to Pfam domain PF10033 Autophagy-related protein 13 contains similarity to Interpro domain IPR018731 (Autophagy-related protein 13)" /note="Predicted" /db_xref="GOA:A8XPA4" /db_xref="InterPro:IPR036570" /db_xref="InterPro:IPR040182" /db_xref="UniProtKB/TrEMBL:A8XPA4" /protein_id="CAP34584.2" /translation="MEADYLSYKKFLKFFSTRMVQTLIQARLGDEIESKCSPYSKNTL DWFNVRVDEVGEISAYIKSNIKNYPPVSKLTLEFFLYTPSGQCLPVEAWTLTVTEGSE DSGRTELYHEMSTLLRSVIVSARMTPMHRLYVKKQNQESFVIMFRVFENDVSSDMGKG KKTRKIGELTSKFGTISLDLHYRTSMHFEEPEIAPIIPPENEEEMEDGEKTVVDETTL QTRPVSEAVPIQDMKKRKASGSVESSGGSSTSRETAPRFILGQSTSSEDSRHSDIGNS MEEDHKPSLADLRNHSFPFVNLLQSAYNPANGTKKNSSSTSLSKDFDPNLLEADSPKP EDVPPPSVEKVAESFRAAKIDEVVLEEDEEEELPIDSMELSEDSFVHFNQISEFGGAP SLGNELGDYLKQLKLAPDMSTPGDIDICNMDLKSELEKVIASSANFDHFLKHVNSFSD E" CDS complement(join(814930..815013,815333..815436, 815484..815625)) /gene="CBG25949" /locus_tag="CBG_25949" /standard_name="CBG25949" /product="Protein CBG25949" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK81" /protein_id="CAS00311.1" /translation="MKIIIAIFLLFILITSVDSVASSNIFSSIFSFGKKKPASTPAPT YSKDSSSRCSLQTSQCSAYECCNSDQTCLRNRCFPRLSNCPVTRDQCGNACCKTSEQC RNGRCTR" CDS complement(join(816737..816741,816872..817028, 817145..817242,817342..817423,818485..818701, 821191..821263,821473..821752)) /gene="CBG16675" /locus_tag="CBG_16675" /standard_name="CBG16675" /product="Protein CBG16675" /note="contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domain IPR000535 (Major sperm protein)" /note="Predicted" /db_xref="InterPro:IPR000535" /db_xref="InterPro:IPR008962" /db_xref="InterPro:IPR013783" /db_xref="UniProtKB/TrEMBL:A8XPA5" /protein_id="CAP34585.2" /translation="MFRIYRVPSSMSIPMISSARMADHAALEDITNCPIHNIDEDNNV FSTTTTRPSRTEHRLRMLAKVSLVFQTSLNISSESLGYCSGSDSNYRKTFRLLCSMKN LQIPYFHSSPYFQEIISAAMRPFGTARLTPGRQTGRQQQTQPQQISTPEPMIGKLGEK NQSVNWFFSNCPIGYGVPDEIGQVEQEFWKIRTSTRMHMLLSYRRRGYCNSPCRSFLD RIAVKITCSDNNMYRVTPVYATVEPGQSLPLHIARITSDLIKRDRLCVNILEADGNKE AREIFKKNANTRAPASINMALEATNDV" CDS complement(join(824156..824305,824391..824625, 824671..824798)) /gene="Cbr-mrpl-18" /locus_tag="CBG_16676" /standard_name="CBG16676" /product="Protein CBR-MRPL-18" /note="C. briggsae CBR-MRPL-18 protein ;" /note="Predicted" /db_xref="GOA:A8XPA6" /db_xref="InterPro:IPR005484" /db_xref="InterPro:IPR036967" /db_xref="UniProtKB/TrEMBL:A8XPA6" /protein_id="CAP34586.1" /translation="MASRFVKNFVNRNPRNNELMGRQAANTGYQFEKDRASRSYIYKV ELVEGKSHREGRLVHYQDGVVVRASTKEPSIANQLYSKTDTSAALNIGRVLALRCLQS GIHFAMPGATKEAIEKSQHQTYFFKALQEEGLTLNEPSHFEHSYETDKSFTWKRYPLK PTRQDKLDEL" CDS join(825163..825283,825334..825457,825505..825799, 825845..826066,826115..826273,826317..826591, 826641..826907,826955..827231,827279..827382, 827436..827587,827639..828077,828122..828314, 828363..829247,830326..830493) /gene="CBG16677" /locus_tag="CBG_16677" /standard_name="CBG16677" /product="Protein CBG16677" /note="contains similarity to Pfam domain PF00723 Glycosyl hydrolases family 15 contains similarity to Interpro domains IPR008734 (Phosphorylase kinase alpha/beta subunit), IPR011613 (Glycoside hydrolase family 15)" /note="Predicted" /db_xref="GOA:A8XPA7" /db_xref="InterPro:IPR008734" /db_xref="InterPro:IPR008928" /db_xref="InterPro:IPR011613" /db_xref="InterPro:IPR012341" /db_xref="UniProtKB/TrEMBL:A8XPA7" /protein_id="CAP34587.1" /translation="MRSRSGSGVRLDRILFMVEQTICSHQNPITALFANQKDFPGHAW VRDNVYIAQALWALYRAYMKCADFDEDLTKAKELGFTCVKMMQSILECLMRQADKLEQ FKKYQRPLDALHSKYAVATKGTVCGDADWGHLQMDAISLYLLTLAQITASGLQVVRNF DEVAFIQNLVYYIETGYRTPDYGVWERGDKTNQGIRELNASSIGMVKAALQALNDVGD LFVDGSRGSVVHVLPDEIEQCSAVLSSMLPRESFSKETDAALLGIISYPAFCVEDPEL VAQTRETITHRLLGKYGCRRFMRDGYKTVLEDGSRLYYNKSELQQFEDIECEWPIFLC YLILDAMYSKDDEAVEAYWQQLESVLVLSDKGFRLVPELYVVLREHVSAEKAHPSTQP RVPGGATPFLWAQSLYVIICLLYEGFLLPAELDPLSRRLSVYEKRPPCEVQVTVLAES ADVQRELRAHDIHVQRVDEIDPVFTILPASALGHLLEKIGESKKLNLSGRPLDRPIGL LSTSRLYQIGNKFVIFTPQFMDSRRSHLMYDIRILTDEWSSELQYIYASWNSVSISGR PLVVLVITQGMLSTEGLSHFSNIHLNRHMKSTVIGAIKKINTGYLSGARVVMKDLSDF FRTTAVSKMEFRDKKAEEMLRSVAAEKVQFTLLTEDATEAKSEKMASPRGPRTLKRGE SVKDRSAYSLIHKASMRHRSIALDSNDADLIQLRLAYKSRPRDLHEMDSPRQSPPLGQ KPLGLVKEHSSGELRQQLLKTTRRGAENETAHRDLKTEQIMEMKADDLLDLLNETTVL EEQISIVHCLWMKFGPDYDTELGCQHITVRMLMEEVHTKACEAREWALVRLTAGLLKK QLEELSKAVTHLLVRQKQITVGMASKKEEVITCPKTNEELEKIMNRAYGDDANSFTLA QEIIVYLGSLVRTEPKLFLEMFRLRIGLIIQVLASELARLRNLSGTEAAETLLTVSPF ELKSMIFSLLSGRLLEEYAEDGFHYGDTIRETRTGIGSFRRQIEERKSLRKSTRSVGG LDIPKEEDEEDEADEDDFQFGIWLRHRRIDGALNRVPNGFYAILWDTVHKMPHGVKIN DTILHWGLTQEMTRKEIKFALEVEEALNRIAEPEYRELVVETLWLLGRLEKLVLLEQP NIPRDRPLDVDHILHVANQIFVNHNKQLETLVLECCASSNPNNTKCDGARSICKHFYD SAPAGEYGTSHYIIRALMQLYS" assembly_gap 829549..830129 /estimated_length=581 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(830745..830753,830864..830961, 831270..831408,831863..831919)) /gene="CBG25950" /locus_tag="CBG_25950" /standard_name="CBG25950" /product="Protein CBG25950" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK82" /protein_id="CAS00312.1" /translation="MSPTNRKRIIHQKYKLLENAPPPTSPTFLRSFFSRNFRGLGSSE GIRKRAPVNFSKILNSLPNFVGKAEKEEGGKGEKRRDPGCSSMVRRRPLGSPSAIV" assembly_gap 831435..831483 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(833443..833683,835799..836460,836932..837543, 837628..838401,838591..838957,839610..839908, 840278..840325) /gene="CBG16678" /locus_tag="CBG_16678" /standard_name="CBG16678" /product="Protein CBG16678" /note="contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase) , PF00271 (Helicase conserved C-terminal domain) contains similarity to Interpro domains IPR011545 (DNA/RNA helicase, DEAD/DEAH box type, N-terminal), IPR000629 (RNA helicase, ATP-dependent, DEAD-box, conserved site), IPR014001 (DEAD-like helicase), IPR001650 (Helicase, C-terminal)" /note="Predicted" /db_xref="GOA:A8XPA8" /db_xref="InterPro:IPR000629" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014014" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8XPA8" /protein_id="CAP34588.2" /translation="MGRDHKEHKRHRSRSKERKRSRSRSPRRDHHERRRRDRSRDRDY DRRDRGKQRDADRQKQKEKEKEASKSAVFEMEESSNAIDPSSILARGTGFLNRTKKGR KLEKISDVNDVIEMKQFDLEKEMERRRRNVELWRAKKKKEELDQASEQQEENDKKSKK KAWNLEDEDDEDEFDLGSNGSKSVENPEETTKKPEKTEKMEVDDDDEDPLEAYMAQIS SQNAKKSKNPVNQISGIVTIIQEEKPEKEKGQVLENEDNMDMVIDDFDIETAAASLCH KGRMLAQTDHSKVYYRKFKKNFYIETAEIQKMTKAEVKAYREELDSITVKGIDCPKPI KTFAQCGLNLKMMNVLKKLDYSKPTSIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLP MFRHILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISE QIADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMK VVNNIRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDVTQNAVICEEH QKLLKLLELLGMYYEQGCSIVFVDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDS SIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGY AYTFVLPEHQEKMAGEICRAFETAGVKPPADLKAMFERFKKEMEAEGKQVHLGGKGFE GHGYKYDEGEAEADANKKKMARLVHGMEAGGEDEDDLDEQLSSMIKTKRRVVHGKPTS EKPTTSGNSKSDREAEKRKDAAKLKAEEISSRLKTAQNTIQPIEKTATQLTAEAVIRG KDVAPVQISTAMLAKEKAQRLNEKLNYLGGEAAPTEKQEEAWEYFEEEWDINDFPQQV RYKICSRESVGHVAELAEVGISVRGVHVPPGKEPKAGERRLHLLLEARSERNLKAAKE EIIRIMKEAFRQLTAQIQRGGTQARYKV" CDS complement(join(840489..840742,840781..840829, 841243..841371,841446..841832,842232..842312, 842370..842388,842427..842527,842892..843131)) /gene="Cbr-col-105" /locus_tag="CBG_16679" /standard_name="CBG16679" /product="Protein CBR-COL-105" /note="C. briggsae CBR-COL-105 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)" /note="Predicted" /db_xref="GOA:A8XPA9" /db_xref="InterPro:IPR002486" /db_xref="InterPro:IPR008160" /db_xref="UniProtKB/TrEMBL:A8XPA9" /protein_id="CAP34589.2" /translation="MRYISHRNQDNSEQGLKLQGSSITGFKVHASRWIAKNLSFFKQS DIPNFLISKKMLNFVFLLYIYIYVIVPFFQKFFIKIMKMQFSGKKKTTKNSKKKIILK FFFHKTSISRSNFVATLSICLSLPMIYSYINSMRSAIQGEIDYCRNSTKSIWSEVQIF KHLPRNRTARQTSYFQDSAPFCDHGCCTPGSPGPTGEPGRPGRPGRPGVPGMPGNPGK PPQQPCDLVTPPPCSPCPTGPPGKPGPQGPPGEIGHPGNPGERGLDGEPGEPGPPGET LFRNQSILKSNHFATRLLELAISKTNFLELNHFATGYSRMSSIVHQGNQVYQDHKDHQ DREPGPPGEAGPPGAPGEPGEIGEDGPPGQPGPKGPPGQSGIPGMDGPVGRRGPSGQP GPPGERGICPKYCAIDGGVFFEDGSRR" CDS complement(join(843621..843788,843883..843996, 844040..844117)) /gene="Cbr-hsp-12.2" /locus_tag="CBG_16680" /standard_name="CBG16680" /product="Protein CBR-HSP-12.2" /note="C. briggsae CBR-HSP-12.2 protein ;" /note="Predicted" /db_xref="InterPro:IPR002068" /db_xref="InterPro:IPR008978" /db_xref="UniProtKB/TrEMBL:A8XPB0" /protein_id="CAP34590.2" /translation="MSAIEVTADAASTWDWPLQHNDGVVKVHNTKEKFEVGLDVQFFT PKEIEVKVSGQELLIHCRHESTITFSSFQTRSDNHGTVAREINRAYKLPDDVDVSTVK SHLATRGVLTITAAKKA" CDS complement(join(846196..846297,846348..847911, 847957..848141)) /gene="CBG16681" /locus_tag="CBG_16681" /standard_name="CBG16681" /product="Protein CBG16681" /note="contains similarity to Pfam domains PF00085 (Thioredoxin) (3), PF01216 (Calsequestrin) contains similarity to Interpro domains IPR001393 (Calsequestrin), IPR005746 (Thioredoxin), IPR017068 (Protein disulphide-isomerase A4), IPR005788 (Disulphide isomerase), IPR013766 (Thioredoxin domain), IPR017937 (Thioredoxin, conserved site), IPR005792 (Protein disulphide isomerase)" /note="Predicted" /db_xref="GOA:A8XPB1" /db_xref="InterPro:IPR005788" /db_xref="InterPro:IPR005792" /db_xref="InterPro:IPR013766" /db_xref="InterPro:IPR017068" /db_xref="InterPro:IPR017937" /db_xref="InterPro:IPR036249" /db_xref="UniProtKB/TrEMBL:A8XPB1" /protein_id="CAP34591.1" /translation="MLFDRRIFALVVVVCLSAIHAEETDEELNYEMDEGVVVLTDKNF DAFLKKNPSTLVKFYAPWCGHCKHLAPEYEKATSRVSIPLAKVDATVETELGKRFEIQ GYPTLKFWKDGKGPTDYDGGRDEAGIVEWVESRVDPNYKPPPEEVVTLTTENFDDFIS NNELVLVEFYAPWCGHCKKLAPEYEKAAQKLKAQGSKVRLGKVDATIEKDLGTKYGVS GYPTMKVIRNGRRFDYNGPREAAGIVKYMTEQSKPAATKLAKLKDIERFMSKDDVTII GFFATEDSSAFEAFSDSAEMLREEFKTMGHTSDPAAFKKWDAKPNDIIIFYPSLFHSK FEPKSRTYNKASATSEDLLAFFREHSAPLVGKMTKKNAATRYTKKPLVVVYYNADFSV QYREGSEYWRQKVLNIAQKYQKDKYRFAVADEEEFTTELSELGLGDSGLEHNVVVFGY DGKKYPMNPDDFDGELDENLEAFMKQISSGKAKAHVKSAPAPKDDKGPVKTVVGSNFD KIVNDESKDVLIEFYAPWCGHCKSFEPKYKELAQALKKSQPNVVLAKMDATINDAPSQ FAVEGFPTIYFAPSGKKTEPIKYSGNRDLEDLKKFMTKHGVKSFQKKDEL" CDS complement(join(849150..849203,849803..849841, 850846..850974)) /gene="CBG25951" /locus_tag="CBG_25951" /standard_name="CBG25951" /product="Protein CBG25951" /note="contains similarity to Pfam domain PF05365 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like contains similarity to Interpro domain IPR008027 (Ubiquinol-cytochrome C reductase, UQCRX/QCR9-like)" /note="Predicted" /db_xref="GOA:B6IK83" /db_xref="InterPro:IPR008027" /db_xref="InterPro:IPR036656" /db_xref="UniProtKB/TrEMBL:B6IK83" /protein_id="CAS00313.1" /translation="MSLGTVVYNTVSRRFSTILLASAFGAYAFNYTLDGLTNFYWDTS VAAPHPQSSPPQKNANKQWKDIKQQLAQE" CDS join(851542..851783,851948..852191) /gene="Cbr-rpl-21" /locus_tag="CBG_16683" /standard_name="CBG16683" /product="Protein CBR-RPL-21" /note="C. briggsae CBR-RPL-21 protein; contains similarity to Pfam domain PF01157 Ribosomal protein L21e contains similarity to Interpro domains IPR018259 (Ribosomal protein L21e, conserved site), IPR001147 (Ribosomal protein L21e)" /note="Predicted" /db_xref="GOA:A8XPB2" /db_xref="InterPro:IPR001147" /db_xref="InterPro:IPR008991" /db_xref="InterPro:IPR018259" /db_xref="InterPro:IPR036948" /db_xref="UniProtKB/TrEMBL:A8XPB2" /protein_id="CAP34592.1" /translation="MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKT NGAFQKGMPFKAYHGRTGRIFNVTKGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCR TDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRAAHTVTTKDNEPELLAPLRFEIV A" CDS complement(join(853902..854009,854555..854674)) /gene="CBG25952" /locus_tag="CBG_25952" /standard_name="CBG25952" /product="Protein CBG25952" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK84" /protein_id="CAS00314.1" /translation="MDDNDFNQAHRSLSKSVTLPPFFSELEKITNSFLFSHLGNRIGK PGEDVNQTVVDEGRTEKTLFKLERHRRRPIE" CDS complement(join(856536..856603,856767..856776, 857133..857327)) /gene="CBG25953" /locus_tag="CBG_25953" /standard_name="CBG25953" /product="Protein CBG25953" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IK85" /protein_id="CAS00315.1" /translation="MEKKTKVQKDLIRRWEKESFAHFHRWKSEGNNHIQVKSHFQKRN EKNMIFRRMSVSVLDKNKPDSAHEKKIQQCRIKIKDERNENFENSE" CDS complement(857489..857506) /gene="CBG25954" /locus_tag="CBG_25954" /standard_name="CBG25954" /product="Protein CBG25954" /note="Predicted" /protein_id="CAS00316.1" /translation="MRNKK" CDS join(858027..858034,858126..858212,858260..858906, 859462..859534,859583..859772,860580..860908, 860961..861312,861363..862283,862329..862395, 862701..863218,863269..863471,863515..863569, 863619..863759,863979..864308,864416..864679, 864730..864798,865030..865716,865765..866107, 866158..866333) /gene="Cbr-gei-8" /locus_tag="CBG_16684" /standard_name="CBG16684" /product="Protein CBR-GEI-8" /note="C. briggsae CBR-GEI-8 protein; contains similarity to Interpro domain IPR001005 (SANT domain, DNA binding)" /note="Predicted" /db_xref="GOA:A8XPB3" /db_xref="InterPro:IPR001005" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017877" /db_xref="InterPro:IPR017884" /db_xref="UniProtKB/TrEMBL:A8XPB3" /protein_id="CAP34593.2" /translation="MESFKQLAREYDENFATFQNEIKEWEETPERMEYVEFHRVQAEQ EFPELKKEREDRERWDRAERIRGDDEKHMRIKHHADEKIRLGVATLPRLLTEQERKLD VFVERPGSIITNMKEVHRDSITRRLHEWTPEERALFKGRQSEHVKIFHGLQEFFVDKT ASDLVTYYYMNKKTENFKKDFKVKKRPTRYKVAPFPSAEELAYCRMMPPLNYRAYPKN SLMCYFCCQTVNGKDLDGTLMPKEAYEIFAISPEEERIVCTRCREEAAKLYKDNRCFG NRCSNQKKRANRVNRNIPLDLADFPVRTRAFLMDKLGSIRVAVKFCTPCKNALTRWIA DINNKEEYIMNELLNYEGQVGWTDEEKTKLVTLINASATLDWDTISLGMNRRPNECKM QYDELNGVKQQPLLEELDDEDPITDEVGDSSSAKPTPTTGNRRSGLARSAKRAPRQPR VPRSTNRRTAGAITRAQAVPKLVEDLGDEIELDDEEGSNGSNEKGSKAPSEMRDASPG ENMEVDSPEGQDDLDIVDEEEEEEVTRDIDSPVKTLLSPKILSHKPEFSLPRIQKPSI SHPVEPMPSSQKDDSEEDEEEEEEDEDEDDEDGDDTQEIDVDEPPAKRPTPTSSSSHL IGSSSLGGGGDGVHELGGRGFIQQQQQPQSAAPPVTVTTASATAHRHVDSTSPSPSVA SQLVPPTETKESVPSLVVPVAQHAPTVAISGMVAPTAASQAVPSPVPIAQPIPLIPPR ENTTPQILTPTPLRPTASSTPSNQVNMQSNLDINMLNMLNQHPNGQQLLAMIIQQQQT QQAQLAQQAQQAQQAQQAQQAQQAQKAQQAQQAQIIQQMQLQAAFQQAQAQSQVQPQG SITSGTPFQAQQQKELNEALLKLAAQAQLPIGANPEMVKNFLNPQHPLFAHQQAALQL QQQQQNAHQQQLLQHLYQQIHQAQTQAHVQAQQAAQAQVQAQAQAQQAAQAQAQAQAQ AAEKAKQAQLQKNREAQLKAVQAQFNLNRSSVQMPIGINIAYHQSLAPSVEPSSSVTP PVHRPRASTTSSVKPMRPNVQEAELKSLREQLVMRLRFIKEAMAEDKKISADSDQLRT LFSQNTQNTQLQNNEVFKILQTRLEQSNARRAEIQKNMNEPLRFVEELMSKYQDLNIF SLDQNDRETVALLGTRFLETKKMQQNAAQQQKAHQTNLTAHRANPIGINREYPAQQSQ SAAIIQQQQHQQLLQQQHALQHQQHQLNVQVSSQKRKLETNSTAQKRNGASHASSAQP SPVIPISSVHTTQSLPLPYPAGLLPQDLAAYQNKSVCVNFPTIPKASERDRQLQEQQQ KILQQQLAMNLHQMQQKQTAQQETKSKRKSGIESITSMQAAAPHRHALAGPSTSRIQG ARGVSPALSVSRIAPQTTSAGRSITAGTSGHPLGSEAVNKNAGDIVKELAKSAQQHFL QAKLQANNSNAVSPANTNNSDDIEVVWEGQSAKPAPKKIQRLEPLCRPTSAKGYLMAK HLGVDYSLRLTKVPEVNTVEEAKECLALILANEASEPAIEKTVTGLVSKGENAAAANG TEVNYMEIYKEAARLDERRYEEFCKLNQDASMQARIQQLNLNPNCIQQYLRQPNIQKM MAEQNLQFSQLSKPAQPGQQPNQSNKQEAYDKKFQLLTFPQEVIRPIPTTANMFANPL PSTSTSTVTSSASAPQLPQTSVPLSTGIPVTATPHAIPSPSVAIQTVPPVPQAAPAIP AKPSSVNSRLSNGFSGDDESRMNHLAANRQPPAPGDRTKYRSIIDFRATGEVDFEHKQ IKFPLADQPQNTLPKITSYTKPLRNLVYEDLSDDE" CDS complement(join(866843..867063,867879..867999, 868046..868146,868197..868336,868387..868616, 868776..868876,868925..869063,869106..869192, 869382..869438)) /gene="CBG16685" /locus_tag="CBG_16685" /standard_name="CBG16685" /product="Protein CBG16685" /note="Predicted" /db_xref="GOA:A8XPB4" /db_xref="InterPro:IPR039545" /db_xref="UniProtKB/TrEMBL:A8XPB4" /protein_id="CAP34594.2" /translation="MGTQIQPILKPSAAVPPHFMAVVASTSDDFYANYAFETSDPKNE NSIRVPRNTTENRRLKYGHTEDDNSDIAYLNFPVIVPSLIFTVISMGCFIGGIITSLT TDYIPDERELIRGYVIEYGSSRFRCNVNWVFWYSYGCVGSNLTSCRNFWFLTLLYFSV YYSIPSCGLPSILNLFELNVIGNVLFRYAVCIPVVIRVFNALTVRNLLRHEYSTKFSS LHKVMADSMPIFTFVEALMMSLFSIVTVHEDFPEANRFFKIVFAMSSVVNMLTTTTVM FAFSSNAESKWDTISMIMKLISVVIYVYFMPQYIQYHQSSITFPICHSYMPQLFALME YVIIAAYAAFHLSFLIDIRNISFICFPRSASGECEPVDPTNFKKGAKYEHCRAFEYNQ RRIMSL" tRNA complement(join(868559..868605,868639..868677)) /gene="CBG28581" /locus_tag="CBG_28581" /standard_name="CBG28581" /product="RNA transcript CBG28581" /note="C. briggsae predicted tRNA" CONTIG join(complement(CAAC03001070.1:1..8001),gap(643),complement (CAAC03001069.1:1..8615),gap(485),complement (CAAC03001068.1:1..36612),gap(10),complement(CAAC03001067.1:1..956) ,gap(656),complement(CAAC03001066.1:1..545),gap(437),complement (CAAC03001065.1:1..2937),gap(32),complement(CAAC03001064.1:1..8920) ,gap(695),complement(CAAC03001063.1:1..25130),gap(3573),complement (CAAC03001062.1:1..35719),gap(2258),complement (CAAC03001061.1:1..42228),gap(391),complement (CAAC03001060.1:1..25613),gap(471),complement (CAAC03001059.1:550..31665),AC084674.1:2979..3505,complement (CAAC03001058.1:440..17909),AC084674.1:20978..22005,complement (CAAC03001057.1:1..71709),gap(10),complement (CAAC03001056.1:1..6486),gap(158),complement (CAAC03001055.1:561..87005),AC084602.1:5460..6505,complement (CAAC03001054.1:880..26344),AC084602.1:31972..33005,complement (CAAC03001053.1:1..23901),gap(10),complement (CAAC03001052.1:1..5624),gap(216),complement (CAAC03001051.1:1..65539),gap(325),complement (CAAC03001050.1:1..13762),gap(10),complement (CAAC03001049.1:1..26043),gap(2055),complement (CAAC03001048.1:1..1108),gap(1000),complement (CAAC03002495.2:1..18542),gap(386),complement (CAAC03002494.1:1..12229),gap(727),complement (CAAC03002493.1:1..1680),gap(10),complement(CAAC03002492.1:1..906), gap(239),complement(CAAC03002491.1:1..11218),gap(214),complement (CAAC03002490.1:1..26564),gap(378),complement (CAAC03002489.1:1..3654),gap(793),complement (CAAC03002488.1:1..48796),gap(82),complement (CAAC03002487.1:1..8454),gap(1000),complement (CAAC03003234.1:1..2514),gap(10),complement(CAAC03003233.1:1..5877) ,gap(295),complement(CAAC03003232.1:1..28785),gap(638),complement (CAAC03003231.1:1..68543),gap(581),complement (CAAC03003230.1:1..1305),gap(49),complement (CAAC03003229.1:1..39069)) //