LOCUS HE600913 614983 bp DNA linear CON 17-SEP-2015 DEFINITION Caenorhabditis briggsae AF16 supercontig from assembly CB4, cb25.fpc2887d2. ACCESSION HE600913 CAAC02000510 VERSION HE600913.1 DBLINK BioProject:PRJNA10731 BioSample:SAMEA3138181 KEYWORDS . SOURCE Caenorhabditis briggsae ORGANISM Caenorhabditis briggsae Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 614983) AUTHORS Howe K.L. CONSRTM WormBase Consortium JOURNAL Submitted (03-OCT-2011) to the INSDC. WormBase group, European Bioinformatics Institute, Cambridge, CB10 1SA, UNITED KINGDOM. REFERENCE 2 (bases 1 to 614983) AUTHORS Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K., Durbin R., Waterston R.H. TITLE The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics JOURNAL PLoS Biol. 1(2), E45-E45(2003). PUBMED 14624247 REFERENCE 3 (bases 1 to 614983) AUTHORS Ross J.A., Koboldt D.C., Staisch J.E., Chamberlin H.M., Gupta B.P., Miller R.D., Baird S.E., Haag E.S. TITLE Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination JOURNAL PloS Genet. 7(7), E1002174-E1002174(2011). COMMENT Details of C.briggsae assembly version CB4: To improve upon the C. briggsae nuclear genome assembly CB3, 167 AF16/HK104 advanced-intercross recombinant inbred lines were successfully genotyped at 1,032 single nucleotide polymorphism (SNP) markers. The resulting data were used to estimate high-density genetic maps. Sequences were assembled by combining the physical and genetic positions of the SNPs to inform the process of ordering and orienting the cb25 supercontigs into chromosome assemblies. 37 of the cb25 fingerprint contigs were split into 100 supercontigs to resolve discrepancies between the physical and genetic orders of SNPs. 638 sequence supercontigs comprise the CB4 assembly. The total nuclear genome content decreased from cb25 to cb4 because of the removal of three supercontigs containing mitochondrial genome sequence (totaling 20.1 kbp). Assembly_name: CB4 Assembly_program: Phusion Seq_technoloy: capillary (whole-genome-shotgun) Seq_coverage: 10x Annotation details: Coding seqences below are the result of integration and manual review of the following data : computer analysis using the programs Genefinder (version 980506; P. Green, unpublished data), FGENESH (Salamov and Solovyev 2000), TWINSCAN (Korf et al. 2001), and the Ensembl annotation pipeline (Clamp et al. 2003); similarity to other proteins from BlastX analyses (http://blast.wustl.edu); sequence conservation with C. elegans using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000); individual C. briggsae GenBank submissions; and personal communications with C. briggsae researchers. tRNAs are predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964). FEATURES Location/Qualifiers source 1..614983 /organism="Caenorhabditis briggsae" /strain="AF16" /mol_type="genomic DNA" /note="supercontig cb25.fpc2887d2" /db_xref="taxon:6238" CDS complement(join(289..401,455..671,760..887,974..1247, 1294..1335)) /gene="CBG12308" /locus_tag="CBG_12308" /standard_name="CBG12308" /product="Protein CBG12308" /note="contains similarity to Pfam domain PF04145 Ctr copper transporter family contains similarity to Interpro domain IPR007274 (Ctr copper transporter)" /note="Predicted" /db_xref="GOA:A8XFI7" /db_xref="InterPro:IPR007274" /db_xref="UniProtKB/TrEMBL:A8XFI7" /protein_id="CAP31304.2" /translation="MLLVACVVAVAENKSAYAQAADNFLDELSGKEVEALSLTQEAQK HDGHDHGNHGGHEGHADHGSHGSHGVHGAHGGHEGHMMKMWFHGGFEEVILFDFWRTD SLFGMLLSCAAIFIMGATYEGVKWFRVFLQMNQSQSQVLVNKSCVETTRSSGGTCHQS ISRSQSNKPQSEPFLASPITRNPSNSPFSPHRLIQMVLYILQLVLAYWLMLIVMTYNT YLTAAVVLGAGFGHWLFAVLQLRSSDGEVTDSFQTDACH" CDS join(2207..2516,2562..2659,2731..2946) /gene="Cbr-atp-3" /locus_tag="CBG_12309" /standard_name="CBG12309" /product="Protein CBR-ATP-3" /note="C. briggsae CBR-ATP-3 protein; contains similarity to Pfam domain PF00213 ATP synthase delta (OSCP) subunit contains similarity to Interpro domain IPR000711 (ATPase, F1 complex, OSCP/delta subunit)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XFI8" /db_xref="InterPro:IPR000711" /db_xref="InterPro:IPR026015" /db_xref="UniProtKB/TrEMBL:A8XFI8" /protein_id="CAP31305.1" /translation="MAQIMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHK QNKLDQISSDLNNVRAVYKDNKKFQEFVLDPTLKALKKKTAIEAVSTKLGLSKETGNF LGLLAENGRLNKLESVVSSFESIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGK SGQKLTVTYAVKPSILGGLVVTIGDKYVDLSIASRVKKYKDALATAI" CDS join(3279..3430,3481..3693,3738..3837,3898..4467, 5552..6325,6371..6517,8447..8497) /gene="CBG12310" /locus_tag="CBG_12310" /standard_name="CBG12310" /product="Protein CBG12310" /note="contains similarity to Pfam domain PF04615 Utp14 protein contains similarity to Interpro domain IPR006709 (Small-subunit processome, Utp14)" /note="Predicted" /db_xref="GOA:A8XFI9" /db_xref="InterPro:IPR006709" /db_xref="UniProtKB/TrEMBL:A8XFI9" /protein_id="CAP31306.2" /translation="MSDDSDIDDVAHKKLLQSIQTPGSVKNNRLKKLTKTKIDASSLL SHITVSRPSTNKAKQSLGIGDLEVTETPTGQKGKKRKSEASGSEKSARKKLKSKTLIP LKDVEARKEIEGKIAFTDLKKEVTQNWTELVQSNRISDQLIFPLTKPDGVMWGDEKTE PVLTEKEMEVMKATDIKMAKERLSQMQRMRAIVGIQEAKNRYMKKIKSKGYHRILKRE KRKQLLKEFDDLVTRDPSAAHEKLAEMDLQRIMERGSLKHRGQNQKFKQMLEKHASRN PEVKKLLDEHLRYLYLAIRYKISISIWKIFRMGRELKAKVISSADADSDAEAPNESVQ KKKKSIHDLLKDAAQEADEESKKQIGAALVDSFLDDSEAQKITLAQMRAKKRQEAAAL KSISAITGTSREENLFDADETWQTDEEKKERNKKKKVLKAKEKARKGTVGKVSYVDKD YNPKLEARKAETFEDKVEKAVQAAGVHAAEERQKEIELDPSKFLELNNNDLTQVSSDF VEKMDQFDEEASKVINEAFKDDDVIADFEAQKEGVKEKERVKDIDLNLAGWGSWVGPG MTEKKRRRNFVVKAKEKKRKDGERNGLIIAESMTAKEGIGKIQPRSLPFPYSRVEDYE AVLKQPLGLEWNMEKMRDELCKPAVVVEAGRAIRPINKKHLLGE" CDS complement(join(4502..4684,4727..5362,5409..5435)) /gene="CBG12311" /locus_tag="CBG_12311" /standard_name="CBG12311" /product="Protein CBG12311" /note="contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domain IPR004296 (Protein of unknown function DUF236)" /note="Predicted" /db_xref="GOA:A8XFJ0" /db_xref="InterPro:IPR004296" /db_xref="UniProtKB/TrEMBL:A8XFJ0" /protein_id="CAP31307.1" /translation="MSGELLGDQSILQMLIPIVQLVTVIFGTVFSMINCGGGSKQKPK KGSAESTGTTGGTTGGGTTGGGDDDDDEEEEKRKKRKKKAAAAAAAKKKAAKAKGKVP PGAPKPPKNRAAIADTHDPNYQTLAGLNDNVFDQKGGGATGAGVARGGPKAPAAGSKP GMAGIHDPNYQTLAGLNDNVFEQKGGGGGGGGGAGGGGAPGAPRAPAQAGGKAATNDP NYQTLAGLNNDVFANKGGGGGGNGAPPAPRAPAQPGGKAATHDPNYQTLAGLNQDVFG ADKKR" CDS complement(6948..7352) /gene="CBG12312" /locus_tag="CBG_12312" /standard_name="CBG12312" /product="Protein CBG12312" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFJ1" /protein_id="CAP31308.1" /translation="MNSIVNGLYNFVTSTVVPTVTEQATNLVGGASAIAGGAAQALTQ ISQTALEWGSGSEDATASSEVFSWEQQKTQSTEQKSEGETSVHREEAGPSSANTSIEW EVVQENPEDTGPIKHNQFEIVQNDYDWMKNSN" CDS join(9130..9223,9277..9426,9473..9557,9700..9802, 10351..10598,10643..10818,10859..10997,11043..11127, 11242..11343) /gene="CBG12313" /locus_tag="CBG_12313" /standard_name="CBG12313" /product="Protein CBG12313" /note="contains similarity to Pfam domains PF00085 (Thioredoxin) , PF01216 (Calsequestrin) contains similarity to Interpro domains IPR001393 (Calsequestrin), IPR013766 (Thioredoxin domain)" /note="Predicted" /db_xref="GOA:A8XFJ2" /db_xref="InterPro:IPR013766" /db_xref="InterPro:IPR036249" /db_xref="InterPro:IPR041862" /db_xref="UniProtKB/TrEMBL:A8XFJ2" /protein_id="CAP31309.2" /translation="MLRWLILLLVLPASLTAEVVSLSSQNFEQTIQSNELVFVNFYAD WCRFSQMLKPIFLEASEKFKDAAPGKIMWASVDADKNNDIATKYHVNKYPTLKLFRNG EVTKREYRSSRSVEALSAYINKQMEVTVQKFTERNALQAAHNPEKGTFIGYFNDENSV EYKNLLKVALFYRDECEFIVGIGELNFPGEAPGLGQQPKLVFQPSNKAINPSQVPFSG DFATYEYLKQWVADKCVPLVREITFQNAEELTEEGLPFMILFKKADDVVSEKVYTDAI LRELPDQRKAINCLVGDGTIFKHPLSHLGKSESDLPVIAIDSFRHMYLFKNFEDINVP GKLRQFVLDLHSGKLHREFHHGPDPVTGNQAPDTEPPPSTFEKLKPQSSRYTILDKTE L" assembly_gap 9988..9997 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(12346..12389,12438..12531,12582..12695,12740..12816, 12865..12956,13072..13286,13333..13468,13513..13656, 14143..14324,14374..14454) /gene="Cbr-coq-1" /locus_tag="CBG_12314" /standard_name="CBG12314" /product="Protein CBR-COQ-1" /note="C. briggsae CBR-COQ-1 protein; contains similarity to Pfam domain PF00348 Polyprenyl synthetase contains similarity to Interpro domains IPR000092 (Polyprenyl synthetase), IPR017446 (Polyprenyl synthetase-related)" /note="Predicted" /db_xref="GOA:A8XFJ3" /db_xref="InterPro:IPR000092" /db_xref="InterPro:IPR008949" /db_xref="InterPro:IPR033749" /db_xref="UniProtKB/TrEMBL:A8XFJ3" /protein_id="CAP31310.1" /translation="MGVLPKINFAVRQLRKCSMTATSSVSSSDPSLASSAFVQDHVRQ MQNDIMEQLIPQDASGAVENLADLNVTSNLGRMTHYYFQQGGKMLRPTVSLLMGNACN SAMNRSIPEEQIAIPISERSAISSHLIVCQNQYKIGMIAEMIHTASLVHDDVIDEANT RRGSASVNAVWGNKMSVLVGDFILARATQILCSIGKPNVIAVMASIIEDLVLGEFMQM SVTPSEATPSQRMVAYIEKTHRKTASLFASSCRSTAILADSSNSNLHQTAYEYGRNLG IAFQLADDLLDFIATSDEMGKPVAADLKLGLATAPVLYACEQYPELTTMLLRKFKHEG DAERARDIVMNSDGMDKTRQLIDAYSQKAVEMASSLPNRNESTEQLIKLALSQTDRKF " assembly_gap 15100..15180 /estimated_length=81 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 19209..19567 /estimated_length=359 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(20831..20886,20936..21017,21076..21180,21233..21284, 21672..21747,21789..22007,22057..22402,22457..22767, 22817..22947,22995..23093,23139..23209,23550..23639, 23811..23909,24133..24201,24250..24429,24481..24615) /gene="Cbr-frm-4" /locus_tag="CBG_12316" /standard_name="CBG12316" /product="Protein CBR-FRM-4" /note="C. briggsae CBR-FRM-4 protein; contains similarity to Pfam domains PF09380 (FERM C-terminal PH-like domain) , PF00373 (FERM central domain) , PF09379 (FERM N-terminal domain) contains similarity to Interpro domains IPR019748 (FERM central domain), IPR019750 (Band 4.1 family), IPR018980 (FERM, C-terminal PH-like domain), IPR019749 (Band 4.1 domain), IPR018979 (FERM, N-terminal)" /note="Predicted" /db_xref="GOA:A8XFJ4" /db_xref="InterPro:IPR000299" /db_xref="InterPro:IPR011993" /db_xref="InterPro:IPR014352" /db_xref="InterPro:IPR018979" /db_xref="InterPro:IPR018980" /db_xref="InterPro:IPR019748" /db_xref="InterPro:IPR019749" /db_xref="InterPro:IPR029071" /db_xref="InterPro:IPR035963" /db_xref="UniProtKB/TrEMBL:A8XFJ4" /protein_id="CAP31311.2" /translation="MPQNNTSSSFLGRLTTSTRSSFLSAKDVRCNVHLLHDSDIIGNE FPRTQSAQTILDYVCEMKHIQEKDFLGLRYQDHNKHRYWLDLSRSIGHVVKQFRTETM TLHLRFRYYPSDPTHLRDPNLRYQLFVQLQRDLLHGRLYCPTSSAAELAALILQTQLG DYDEEKHIGNYVSEFKLLLKQTPKLEERIAQNHKQMRGKSSDAAELEFLEKASQLDTY AFDPYTIKDPQDSGPVYLGASCKGILVYAGQARTHNIDWSELVKVDYSGKEIRLTLSE SYRGQITAAGTPTGTLNGHGPGSPISGSSGMDKYQVKKPMTLKYTCPSSQFAKHLWIH ILSQQAFFNEDSARDVKLKFSKPRIPLLSRGSTFRFPSKRVYKEIEEEDVKSIQFDKS ILETSAVFNETTMSNENEESILNCSSLSVPTSSCSGVVRYELPRQTPRAEQPWLKPSH LKISGHDNTDTIASSSSSPDSSEHQNNNLSKITNLNVSMDAGGSSSPESTSPIPIVHT QQHADHNSTSFTVHLIKREEIATSSSSSGTIYGVPLHQTRAQTLENKFNELVEREMDI GRPLASSTPRSAKQILEKNGNGKLANGGSSSSADKKSVHTNGNILISTEEKQDSILSS SEESMTTQKSLVSRVANTCFVIFLILLLLIAVVIVLFERSDGSAHNDFIENNRALSDL RHLYYEPTRHYVVGQYRKYFGPKI" CDS join(48991..49053,49814..50020,50582..50697,51374..51620, 51692..52041,52090..52402,52449..52562) /gene="Cbr-pqn-44" /locus_tag="CBG_12320" /standard_name="CBG12320" /product="Protein CBR-PQN-44" /note="C. briggsae CBR-PQN-44 protein; contains similarity to Pfam domain PF07984 Domain of unknown function (DUF1693) contains similarity to Interpro domain IPR012937 (Domain of unknown function DUF1693)" /note="Predicted" /db_xref="GOA:A8XFJ5" /db_xref="InterPro:IPR012937" /db_xref="UniProtKB/TrEMBL:A8XFJ5" /protein_id="CAP31312.2" /translation="MRGRRSRTVINYDQHGNMYKTLTPHGSNRMRNGNGYQGNQHTQQ NQHYQNHQNHQSHQNHAAQNNNQNSIQETAVVEKIVSRTMLLAKGQMKRLRAVLDERV EIHGRGNFPTISTKLIDLIRCVRTHLGAAQVRARDIRLNGGAASFVASSDDFTYADLD LIFPIQIDDESGENAEKTIFESIREAVFTTIRELMPDNIGKEKFDFETLKDVASDNDV WSLFSLNNEYGRCIELKFVNKMKRQFEFSVDSFQIHLDPLLDDFESCEQKKVTIESMY GDIHQAINHLHERLIDTVKPEEIRGGGLLKYCHLIIRGYKAAKPWNCRKLERYMCSRF FIDFPDLNSQENKLRNYLDSHFGTSFNGVTYDQWSSSGSDTESEASTSQATSSSLLVT GQAKYDFLMLLYRVIDESTVCLMAHERHMTLNMIDRVAFQLSMQCYSPPNFSSGSSTP PRTTLFYLPPDAATWIPVI" CDS complement(join(53224..53335,53349..53683,53727..53966, 54059..54352,54402..54624,54674..54849,54893..55625, 55678..56258,56303..56464)) /gene="CBG12321" /locus_tag="CBG_12321" /standard_name="CBG12321" /product="Protein CBG12321" /note="contains similarity to Pfam domains PF02170 (PAZ domain) , PF02171 (Piwi domain) contains similarity to Interpro domains IPR003165 (Stem cell self-renewal protein Piwi), IPR003100 (Argonaute/Dicer protein, PAZ)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XFJ6" /db_xref="InterPro:IPR003100" /db_xref="InterPro:IPR003165" /db_xref="InterPro:IPR012337" /db_xref="InterPro:IPR036085" /db_xref="InterPro:IPR036397" /db_xref="UniProtKB/TrEMBL:A8XFJ6" /protein_id="CAP31313.2" /translation="MPPHPPAPPMPPMPPMPPVTAPPMTPMAPIPTNPQELHQKSGND ACIKRLGQLNVEAAPKVYLKPSEPGKVGKPADIQTNIFGIEIEKETTVFRYMVHAKAE LSPTKEAVFTKKGKEDFVVLDRHEKCCNIFFYAVEKNPDFFKMKDGNCIIYDGQSTLY TTVNLFSQLDAKEKKSRIFEINGAEIENQELKSLPCISLEVYSPRDNALVISSETLGK RTADQNTESNNREYTQFLELALNQHCVKQTDRIGCFEHGKVYFLRATEEGFDARDCID VGDGKVLYPGLKKSIQFIEGPYGRGQNNPSVVIDGMKAAFHKEQNVLEKFSEIVNRDV SRGMSDNDRDKASQVIRGLDCYASYSNRTRHLRIEGIHQDCAAKARFELSDGKSCTVQ QYYHEKYNIALKFPGANLLICKERGNKNFYPAELMTITKNQRVTIPQQTGQQSQKTTK ECAVLPDVRQRLIVTGKKAVNITEENELLQALGIKVYPEPLMIKARELEGKEIVYEKK TSSDAGKWRPPPGCYNKPAVFPDLWAIYAVGTQHSRFSVQDLNAFCSMFMDTLQRKGI TVKTPAETSLLHVDQAMSKLENIAMNKCKYVFIITDDNITHLHREFNQTRLAVYNIFR EMSKATSVCKDGKRLTLENVINKTNIKLGGLNYTVSDTKRSMTDDQLIIGVGISAPPP GTKFLLEGKGHLNPQIVGFASNAVSNHEFVGDFVLASVGQDTMSSIEDVLKNSMEMYE KNRKRFPKRIIIYRSGASEGSHPSILAYEIPLARAIIHGYCKDIKMIYIVVTKEHSYR FFKDQLRGTKATEMNIPPGIVLDNSVTHPACKQFFLNSHTTLQGTAKTPLYSVLADDC NAPMDRLEELTFTLCHHLKSLHSPPRSQLRCMWPMSTPKEGAHFGLRRRKLLTTITTI NDGAPIEAEGSESNRLKDLTKELSYQMTDLHMKRVNA" CDS join(57693..57818,57861..57944) /gene="CBG12322" /locus_tag="CBG_12322" /standard_name="CBG12322" /product="Protein CBG12322" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFJ7" /protein_id="CAP31314.2" /translation="MANTVLQVDDDEYEDDFFLRNTPTSSSPSVAGSITDNEDLDFDL LGLKNRSDSSSSSSSSQSNRAGSLF" CDS complement(join(58240..58499,58546..58768,58820..58953, 59002..59189,59247..59362,60321..60395,60448..60551, 60606..60857,62386..62470,62518..62594,62648..62912, 62958..63302,63348..63500,63546..63663,63722..63797, 63843..64056,64109..64149,64202..64256)) /gene="Cbr-ppk-1" /locus_tag="CBG_12324" /standard_name="CBG12324" /product="Protein CBR-PPK-1" /note="C. briggsae CBR-PPK-1 protein; contains similarity to Pfam domain PF01504 Phosphatidylinositol-4-phosphate 5-Kinase contains similarity to Interpro domains IPR002498 (Phosphatidylinositol-4-phosphate 5-kinase, core), IPR016034 (Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup), IPR023610 (Phosphatidylinositol-4-phosphate 5-kinase)" /note="Predicted" /db_xref="GOA:A8XFJ9" /db_xref="InterPro:IPR002498" /db_xref="InterPro:IPR023610" /db_xref="InterPro:IPR027483" /db_xref="InterPro:IPR027484" /db_xref="UniProtKB/TrEMBL:A8XFJ9" /protein_id="CAP31316.2" /translation="MTARSSTIVFTRTGDADEEGKPPEENGENGEKVEAPILRPDNEA RDIPLNSTSAGGNLTSREPQNTKEKLGHRRIDEQGGVSYKKVPTNALMQAIQLGISNS IGSLASLPNRDVLLQDFEKVDIVAFPAAGSTITPSHSFGDFRFRTYAPIAFRYFRNLF HIKPADFLRSICTEPLKELSNAGASGSIFYVSQDDQFIIKTVQHKEADFLQKLLPGYY MNLNQNPRTLLPKFFGLFCYQVIKTKFINLKNYFFQSLGKNIRLLVMNNLLPQTVTMH EKYDLKGSTYKRMANKAERSKAHPTLKDLDFLENHKDGIFIDPIALDALMRSISRDCL VMESFKIMDYSLLVGIHNVELGIKERAEQNGEVAPAPSTSTDQFSGEKTESHKVLQEK FSVWDTGDGDIPHGGVPARNSNGDRLVLYLGIIDILQNYRLLKKMEHTWKAILHDGDT ISVHNPNFYASRFLSFMTEKVFKKGTALKQSPSRRRMVKGSSYEDEQTVVVNSAHRPH RESERDGLNMTVTVPDGASSTTPRDSALFGSQTARESTRLYNRETPGMSEDRANSARD PSSSMSRVPLRRSYRDAGQTMSIEKKEKKVERLFAQPKPTDEKLAEEQDEIEEIMVQE KEPNNTQFLSLWKNSENISKLESHAVNRGLVTAARDAPNDSSSRSTLWQNLSSMSSAD QAHLMSRLSSTWPFQQERRALTWPVHAGLLANCVTSSLIATRINSEMFLYDAKAKFFD SIRKCPKSPFVFGVYSSGVTYFMLYQIIVTPKVFNELTPCPSCLIINSLAIGLATGIA LPMLATPYLAHYVLINRESAVGKAKSLPVVNNLLEFLTLGWEGSKPARSVMATCAAIQ MLASFGAMYTMLWGRERMFSTLELDSDLARRLVAEAQTSTSLKQKILDFLRRIPLING AIPESPENERVI" CDS complement(join(65664..65754,65805..65940,65988..66063, 66111..66306,66352..66505,66570..66711,67761..67793)) /gene="Cbr-dhs-2" /locus_tag="CBG_12325" /standard_name="CBG12325" /product="Protein CBR-DHS-2" /note="C. briggsae CBR-DHS-2 protein; contains similarity to Pfam domain PF00106 short chain dehydrogenase contains similarity to Interpro domains IPR020904 (Short-chain dehydrogenase/reductase, conserved site), IPR002347 (Glucose/ribitol dehydrogenase), IPR002198 (Short-chain dehydrogenase/reductase SDR)" /note="Predicted" /db_xref="GOA:A8XFK0" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR020904" /db_xref="InterPro:IPR036291" /db_xref="UniProtKB/TrEMBL:A8XFK0" /protein_id="CAP31317.1" /translation="MPVFAGCLTKQGIESLSAEARKSIGNGRSLDAFLMDVTSDESVE KTAKRLEEKCEKFGGLHAVVNNAGITGKHIADDFLDMREYLKVVEINLWGPVRTTMAV KKLLKKARGRVVQVASICARVGLPGLGPYTVSKYGVSAYCDVIRQELRAFGISVHILE PGFFDTPLINRQKIDAEISEAWEQAPSDVKAQYGEKFFNDARQSTQMFLNSIASSQIS LVVDAYFHAITAKYPRSRYQIGWDSILLFIPFSYLPTGLQDYIFAAAGLFLPKPACH" CDS complement(join(67461..67486,67880..68062,68147..68213)) /gene="CBG12326" /locus_tag="CBG_12326" /standard_name="CBG12326" /product="Protein CBG12326" /note="Predicted" /db_xref="GOA:A8XFK1" /db_xref="UniProtKB/TrEMBL:A8XFK1" /protein_id="CAP31318.1" /translation="MPSVNISLLSLSTNVTDNESQRDPVINTTMFGLLYWVLGLTVLE ALLCFGVIFAFFLLIRYCLETVSIDNLSKRAVFITGCDTELQNSTTS" CDS join(68595..68963,69010..69938,69970..70177,70234..70446, 70494..71151,71197..71507,71554..71729,71795..72070, 72117..72210) /gene="Cbr-nath-10" /locus_tag="CBG_12327" /standard_name="CBG12327" /product="Protein CBR-NATH-10" /note="C. briggsae CBR-NATH-10 protein; contains similarity to Pfam domains PF05127 (Helicase) , PF08351 (Domain of unknown function (DUF1726)) contains similarity to Interpro domains IPR013562 (Domain of unknown function DUF1726), IPR007807 (Domain of unknown function DUF699, exodeoxyribonuclease V alpha chain)" /note="Predicted" /db_xref="GOA:A8XFK2" /db_xref="InterPro:IPR000182" /db_xref="InterPro:IPR007807" /db_xref="InterPro:IPR013562" /db_xref="InterPro:IPR016181" /db_xref="InterPro:IPR027992" /db_xref="InterPro:IPR032672" /db_xref="InterPro:IPR033688" /db_xref="UniProtKB/TrEMBL:A8XFK2" /protein_id="CAP31319.2" /translation="MRTKLDGRIRTQIENGVATGHRSMFALVGDKARDQVPILYHILS KSTVSARPNVLWCYKKELSFSTHRQKKAKKIKKATTTISGSLPDADPFDVFISSTQIR YCYYNETEKILGNTFGVLVLQDFEAMTPNLLARTIETIEGGGMVILLMQSVRSLRQLY TISMDVHNRYRTEAHNEITARFNERFILSLASCSSILVLDDQLKVLPISSHIENVEAV SASQKVGSACSEVFTRSSLQKIQSESDAELASLKEAMKATKPIGPLLSRARTACQAKA LLRFLDVITEKQSNVTCSLTAGRGRGKSAAVGLSLAGAVAFGYTNIFVTSPTPENLKT LFEFVVKGLDALDYQEHTDYELIQSANPEFKNCLVRVQVFREHKQTIQVHIIFFLNCN TDIFQYISPTDVEKLGQCELIVIDEAAAIPLLLVKELISGDFSGPYVSFLASTINGYE GTGRSLSLKLLQQLRQQSAGGEAKEGKVASSKGRTLHEMHMEESIRYKPGDKIEKWLN RLLCLDATSCQLKLECGTPPPADCELYIVNRDTLFSFHDASESFLQQVMAIFVSAHYK NSPNDLQMLSDAPAHNLFVLMAPIDKSRKTIPEVLAVVQLCLEGRLDSDKVENGLESG KRAAGDLIPWTISQQFMDKQFGTLCGGRIVRVAVHPDYQSMGYGSRAVQLIEQYYLGL AASLDEDEHANGVQKKTTIKQVKDGHTVELLEERIEPRADLPPLLQRLDERKPEKLDY LGVSFGLTVPLLKFWKRCEFVPVYIRQNSNDITGEHTCIMLKALEAGSTDNDDEPMAT WLPVYWREFRRRLVNLLSYDFSTFSAQLALSLLQMKNKSAEKQMKRYVIERSELAIHL SNTDLRRMSQYGRNMVDSHIITDILPTVAKLYFEQRLPQDLKLAVTQSAILLARGLQR KQFDDVSKELDLPANQVFALLTKAIRRIGDWFDEVCETAVRENLDKTSEAASNNRTVS SLPKAVPLANLEDELDEAAKEIRARHEKDRKALLAELGSELQKYEITQDEKELAEAYE SVNMKYANKLISVKSKRTAIQAQIPDEKNPLEKKTKKKKRFSSGGRH" CDS complement(join(72621..72632,72681..72802,72846..72904, 72951..73012,73060..73577,73657..74003,74051..74197, 74245..74457,74513..74941,74986..75059,75106..75158, 75203..75329,75374..75485,75536..75651,75698..75784)) /gene="CBG12328" /locus_tag="CBG_12328" /standard_name="CBG12328" /product="Protein CBG12328" /note="Partially confirmed by transcript evidence" /db_xref="UniProtKB/TrEMBL:E3CU32" /protein_id="CBX33098.1" /translation="MVLNDSFSSLFSSPLRKANESFNESFGDKNTLSPATVFRCLQKE YDQISTVLQSHPPTCSQYQTSLNELISLFERAEDQSMFGVQKLILSVFLKLTGNILSV LGKPKYQPTLYKLAQLIASSISPDLGADNEIEEENMHKWADRIIIECSIHLLEFPNYK MDLEFNIDEIVDELVLASGKFQFVKSAVFVAARDMVSEMDTTVEITPESRCTLGNLAD ENILRLLLWLFLRQKSTLKSNLLPSLFPNLPFTLKAEEYDRSAECSLLDLKVRFLASN KNLHPSFQLYLVSLSVVSSTTTESGMTMKSAPTIASQLSLTKHQKNCWKAIVDACAGK KVAAISRLRTSQLVESVRLISDGSEDVRVLFDGWKYCLQPSATYDDDVYEAIQAVTEK YRAKMNSLLAYGPFYTSDPSSFSKSGSVCRRDMKTLFPLQFDYEFVNTTEAEHIGTVI NSLEGYMSPQPENDVTEEEDAEVLSTKDFESAGDETFHSVGSTSDHYSSANNSQFFSP LQHNRDSMLPSAVSQLIREESLANTSHVSTKSLILTPTRGTSATPTHASPHPNIFDLS IERHQNVSVTAPEKSDLDHSDEEEDELEAALLESTQKHEKCIIALKTPEKSVNVEKLT PTPTKDAQTATDDAFISSGESSIVTVKYTPKTESTTTLNAAPPIFISDSEEYDDEEYY DEDEEEYYDEKEENDESLTEKEAYLSESEIESLMEQIREATLFMFRDRRMKMFGLENQ KIQLDNTNDAEILEAATKKLEKISMDLSATSERLDKLKIPNLTTMFPSTAEPSVQVLP IPLPKTATEATTVDHNPQKCLGCQFSE" CDS join(77183..77224,77483..77639,77954..78152,78198..78475, 78572..78907,78954..79078,79139..79237) /gene="Cbr-apm-1" /locus_tag="CBG_12329" /standard_name="CBG12329" /product="Protein CBR-APM-1" /note="C. briggsae CBR-APM-1 protein; contains similarity to Pfam domains PF00928 (Adaptor complexes medium subunit family) , PF01217 (Clathrin adaptor complex small chain) contains similarity to Interpro domains IPR018240 (Clathrin adaptor, mu subunit, conserved site), IPR008968 (Clathrin adaptor, mu subunit, C-terminal), IPR022775 (AP complex, mu/sigma subunit), IPR001392 (Clathrin adaptor, mu subunit)" /note="Predicted" /db_xref="GOA:A8XFK4" /db_xref="InterPro:IPR001392" /db_xref="InterPro:IPR011012" /db_xref="InterPro:IPR018240" /db_xref="InterPro:IPR022775" /db_xref="InterPro:IPR028565" /db_xref="InterPro:IPR036168" /db_xref="UniProtKB/TrEMBL:A8XFK4" /protein_id="CAP31321.2" /translation="MSISGLFILDLKGNVVISRNYRGDVDMSCIEKFMPLLVEKEDEG TASPVLVHQGISYTYIKYMNVYLVTVSKKNTNVILVLSALYKIVEVFCEYFKTLEEEA VRDNFVIIYELFDEMLDFGYPQTTESKILQEFITQQSNRLESVRPPMAVTNAVSWRSE GIKYRKNEVFLDVIESVNMLANAQGTVLRSEIVGSIRFRVVLSGMPELRLGLNDKVFF QQSGASSIPSMCPFIPFRFERTISFIPPDGEFELMSYRLTTQVKPLIWVEAAVERHAH SRVEYMVKAKSQFKRQSVANHVEVIIPVPSDVSAPKFKTGAGTAKYVPELNAIVWSIR SFPGGREYIMRSSFMLPSIGSEEVEGRPPINVKFEIPYYTTSGLQVRYLKIIEKSGYQ ALPWVRYVTQNGDYQLRMT" CDS join(80657..80835,81040..81158,81207..81316) /gene="CBG12330" /locus_tag="CBG_12330" /standard_name="CBG12330" /product="Protein CBG12330" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFK5" /protein_id="CAP31322.2" /translation="MDHGGHDHGGHDHGGHDHGGHDHHDHHDHHHGGWGHDHGNGGGG GDGWGYRPFTGFGGGRYYGGGGLLSRLFGWRRRRYYNGYGGGYNGYPNYGGGFCRLTQ FVDYVGQMPRFYCDCPPYPPNYQWYQCSPTYAG" CDS join(83776..83791,83838..83941,83989..84447,84497..84672, 84719..84875,84921..85049) /gene="CBG12331" /locus_tag="CBG_12331" /standard_name="CBG12331" /product="Protein CBG12331" /note="contains similarity to Pfam domains PF00782 (Dual specificity phosphatase, catalytic domain) , PF00102 (Protein-tyrosine phosphatase) contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000340 (Dual specificity phosphatase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8XFK6" /db_xref="InterPro:IPR000242" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="InterPro:IPR016130" /db_xref="InterPro:IPR029021" /db_xref="UniProtKB/TrEMBL:A8XFK6" /protein_id="CAP31323.2" /translation="MSSNKKNKSRSKTVREREQSQKTAGLDEPTTADRKRERKQIVKF VARTLEKGPSGLRSEFAGMKRFNDFSKMKAFKENQKHGKNRYKDVGCLDNNRVKLGGS WPHEYIHANYVATPTNPKRFICTQAPLEKTCADFWYMCLQDRVETIFMLCNYTEKGAK KCFEYLPTEEKPDTMTFKEKSQKVTVKFESSSSIKFRDSSNAKVTKTILTIEGAGCEK LKITHYHWIDWPDRGVPTADNAILELLEKARVSKGPIVVHCSAGIGRTGSVVMIEYVM DQLLNGQNIEESDKILQKIREQRNNSVQTDHQYLFVHQVMLNFFEKRGLLDENTMTFH KEFTEQYSKCVL" assembly_gap 85849..86928 /estimated_length=1080 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(88287..88352,88403..88685,88740..88865,88917..89044, 89119..89214,89257..89354,89401..89473) /gene="Cbr-spe-11" /locus_tag="CBG_12332" /standard_name="CBG12332" /product="Protein CBR-SPE-11" /note="C. briggsae CBR-SPE-11 protein ;" /note="Predicted" /db_xref="GOA:A8XFK7" /db_xref="UniProtKB/TrEMBL:A8XFK7" /protein_id="CAP31324.1" /translation="MSDEELDISAALNNKQTPAKKTRKRKSPSKEETESPEKNEFPSV FGAMGTPMAKIENEKEWDEWKEKELEKVRRQWKRYLRSKWDLEKDKLPKKSESSHLLG RYEHMANVKKAQEEITEGLEAINEMNFNVGVGKAINIQVNGKDVPKKKTKKFAAAVEK ALKEMGNPNIEDMFNDDMDEEEARAEAEYERKRAAKAMKLREEEHEFFPWEEYTEEMQ DLGKTDKISEDHYKKWLEKKIEENKVSPKFNRYQLDLICLDKDAFNNKKSLKSVVKSV QNFYKKMRRSKKD" CDS complement(join(90273..90431,90484..90943,91004..91223, 91272..91377,91425..91535,91579..91839,91885..92219, 92269..92407,92455..92632,92910..92999,93052..93138, 93185..93458,93506..93583,93629..93756,93803..93971, 94018..94135,94522..94743,95377..95496)) /gene="Cbr-aman-3" /locus_tag="CBG_12333" /standard_name="CBG12333" /product="Protein CBR-AMAN-3" /note="C. briggsae CBR-AMAN-3 protein; contains similarity to Pfam domains PF07748 (Glycosyl hydrolases family 38 C-terminal domain) , PF01074 (Glycosyl hydrolases family 38 N-terminal domain) , PF09261 (Alpha mannosidase, middle domain) contains similarity to Interpro domains IPR015341 (Glycoside hydrolase, family 38, central domain), IPR011682 (Glycosyl hydrolases 38, C-terminal), IPR000602 (Glycoside hydrolase, family 38, core)" /note="Predicted" /db_xref="GOA:A8XFK8" /db_xref="InterPro:IPR000602" /db_xref="InterPro:IPR011013" /db_xref="InterPro:IPR011330" /db_xref="InterPro:IPR011682" /db_xref="InterPro:IPR013780" /db_xref="InterPro:IPR015341" /db_xref="InterPro:IPR027291" /db_xref="InterPro:IPR028995" /db_xref="InterPro:IPR037094" /db_xref="UniProtKB/TrEMBL:A8XFK8" /protein_id="CAP31325.2" /translation="MYRLAVSAKRKVLLNPKTFAVYFFAIFFTFLLAYHQRLGQQLGQ HTHMSRIVNMQSAVQEQNVPQKETPQVEKENNVGKEEQKDVLKEIPKVSNQEKVEEVC SRPPEEVKTDFNTFDLFESVVASSKALPQSSRKARIEKLKVYVLPFTHVDPGWLETFE SYTKRTNQILDNMHEFMMKNEKMRFMWAEFVFFERWWSLKDEKVREDVKKLVSEGRLE LATGSWVMTDEANPYFPVSVDNIVEGFQFINQHFGIKPQTIWTNDPFGYSNSVPYLFK KSGVRRNVINRIHHRIKQTLQGQQAIPFKWRQYFDKAGEDDVLTQVLPYTHYDVLNSC GSDASVCCEFDFKRITHWSCPGPKPVNINDQNVVAKADKLVGQLERMSEMYKAPVILM MHGDDFRFDMIEEWHQQHDNFLPVFDQINKGDRVEIRFGTFTDYFNGLEKWYSDNEDH QPATLSGDFFPYMCALGDYWTGYYTTRPFFKRQGRLLHSLIRNSDIMLSMLRGNLKQR KIDENTKRLEDARRSLSLFQHHDAITGTSKVSVMDNYSEILHSSIGSMKIVLENLTKS DLDIYPRIHDGVEIQQVVDFSEDPTDKEIRIFNSLLFTITDVFSIRITLREVTVSIDG KSIEAQLEPLFQKGKAETDSFSLLFKATVPPLSMIKVRIQKGDSGGLTKIAKVESRDA SAWELGQWVFFEIGNSESAFYSDWKVGSPTSSSLETPFLKVALNLSNGAIQTVVKQSD KSTFECQQSWHLYKEAGGGSYLMRLHTNPTEVKEFKWLKVAGPVRQSIYQKSKNVLQK TSINNVEGPSGEEIDISMSIDVTKERNTELMTRFTTNWAKPITFTDSVGMQLLRRDFY RLPIQSNYYPMPTSAVLQEGKQRISIVSNVEHGARFLENGSVEINIDRILNQDDGKGL GSGPDAIPSDMKPVDMKFKLVFDNLGKEDQPNIHYSTHTFRAQQAVQSVIYPPLLFDA KPKKEEDIEEIEENSNLRFPCDVQLLTVRPLSGDRQLMIFYRHATSCSSEKMSNCGAD FKKSLMNLLIRLGVREAQKTDLSGVTAIGDKVNVENLPDVDIKTFDFLTLVLHR" CDS complement(join(98558..98680,98766..99054,99099..99202, 99248..99316,99364..99492,99571..99847,99898..100010)) /gene="Cbr-fbxa-145" /locus_tag="CBG_12334" /standard_name="CBG12334" /product="Protein CBR-FBXA-145" /note="C. briggsae CBR-FBXA-145 protein; contains similarity to Pfam domain PF00646 F-box domain contains similarity to Interpro domain IPR001810 (F-box domain, cyclin-like)" /note="Predicted" /db_xref="InterPro:IPR001810" /db_xref="InterPro:IPR040161" /db_xref="UniProtKB/TrEMBL:A8XFK9" /protein_id="CAP31326.1" /translation="MGNKSSSVQQPLDSFSHWNDLPPELKSACIKHLDFKTRLLLRST SRAERALVDSQKFNLEHVQIKGLLPYPVNALIPTGFDGQKLTIVPSSDAKTAIVIRIR NLTRFFETVLPLLVFILTRSVINEFSVEGVVLKNPELLFFVSRLGPITKSIYMDGNTC NKFPIEDLINNDIVTNARMVRIRDLTCKDAVWKLAEKWIENDSVIGTTFQVTSVHGHS IPHFVQKFRDRIIFENHEEVRITTNNPSKHILLKLARRWRVSRPLTCVVISSYMKKEE YESFGHWVSKKVMPIWEYLSFVFTDDFHEDDGLNCYSFIILIFHCLWLIITLNKTLKV NKFIIFLEAFSEQIPEVNKKDDAASDDRNTLLE" CDS join(100589..100744,100801..100931,100975..101056, 101102..101227,101272..101526) /gene="CBG12335" /locus_tag="CBG_12335" /standard_name="CBG12335" /product="Protein CBG12335" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XFL0" /db_xref="UniProtKB/TrEMBL:A8XFL0" /protein_id="CAP31327.1" /translation="MSSGDPFSFSQPSGGTSKKVELNNEQIHALLNKLSSDEQKELTE MMRNCTTEVTMTRGLPITGAILGSLYVARQRLPMQYHFGPKGWPFYAIMGVASLTASN LLFMGTCRDRIKPRIDQLWKKYDLSSSSTNYEEIRRQNRVHSETPARRDPRQPESVTT TQGIEKPNPYDYTYTIPSTEENTSSYGDSFTSYKPLVGETSEFQQSPRVRQVSPPISS SFTDSESSFMSGTPSGPSSSSSDKSQGYSFS" CDS join(101898..102011,102058..102225) /gene="CBG12336" /locus_tag="CBG_12336" /standard_name="CBG12336" /product="Protein CBG12336" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFL1" /protein_id="CAP31328.2" /translation="MPIVHRNVEGENDGECYKIKGPKTPFLLRHLEKHFMEKPEEEQR EKKDKQESTSGTKRERSESDSDEDFDDPNVPSTSSSSKKKKRLEQQSHR" CDS join(103174..103218,103587..103664) /gene="CBG25268" /locus_tag="CBG_25268" /standard_name="CBG25268" /product="Protein CBG25268" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6III6" /protein_id="CAR99716.1" /translation="MDVRAIASLFPSHYFRPTSHRPHAHSRPPHHPIHTHKTPP" CDS join(106109..106156,106205..106282,106790..106792, 108720..109494,109693..109883,109930..110338, 110877..110936,112082..112133,113151..113422, 113490..114662,114786..115435,115483..116534, 116591..116900,116950..117459,117501..117635) /gene="Cbr-let-526" /locus_tag="CBG_12337" /standard_name="CBG12337" /product="Protein CBR-LET-526" /note="C. briggsae CBR-LET-526 protein; contains similarity to Pfam domains PF12031 (Domain of unknown function (DUF3518)) , PF01388 (ARID/BRIGHT DNA binding domain) contains similarity to Interpro domains IPR021906 (Protein of unknown function DUF3518), IPR001606 (ARID/BRIGHT DNA-binding domain)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XFL2" /db_xref="InterPro:IPR001606" /db_xref="InterPro:IPR021906" /db_xref="InterPro:IPR033388" /db_xref="InterPro:IPR036431" /db_xref="UniProtKB/TrEMBL:A8XFL2" /protein_id="CAP31329.2" /translation="MPGDDNAVGTETNEDKPTTSNASTTEEQTPNSEESHQNPQQRRG EDADKYAASVAKVAHGGGNAKKDDTAGPPAPESTPPQQPVPPQPPQQQQYPPPPHHLP PQHSNVPPNSFAPPPGQLPPGQHPPPPAHHPSHPGMPPMDWRPPQGSEHQMPPVYPPG YPPYGMPPRHHPGYPPHPAYYPPPGAPYGYPPQMMRPPMMGPGDMVRMPPGPTPTEWA AQQQAQAAAAARGAPPKDGPNGNPATPSSSQPIPSPSASSIAEESLDEKPSGTKMPPQ PTPQPQQIMSPMPPQTPHAQLPTPSSSATPATPSEAPKVSGKVLSRAELLEKLVGPVS HHNPPQVMHERRLFFERLIDFCERSGDPITMVPQVSKQSIDLHRLYIGVRGKGGFQQV TKEKYWKNLCTEANPDLAESSAAGYQLRKHYQKHLLMLECRETGKNPEDEVAYADKMK RQRKREPGGAAAAAVAAAAAAQQGPDQKPIQGVPGGSGPPPPPPGPPGAYPEAMDKCI ASFLFPNQVSLHRQVCNIITRFNSRLISICAMAHASTTWFPLPQHSSNAPLPPHQNGY LQVPQGSSGQPSPGATPQRSPSNYPMHGYPSGYPATLPSQQHMSRSEQFYRSRGFFPP GYPPIGNGAPGGPQSGPPQYSGHPGMDPNYMYYQQHGMVPPHPGHPGYPQMNAFSPGQ YPGHQRLAGTPGGPPPGAQAMRAPMPQHMQEMDEQQRQWYAHQQAAAAHHHSQQQAAA QAAQAQASQSQQSSTPATSTTPAPQTAPSSQVAPASGSNTQPATPSASHKPPTPAGAT SATLQVESAPTTGGSQSGSRAPSVGPGTSGTPDGASLPGVEPQPAVSSETSTPGEPGT STPGETTPSTSAAPPTPGQPPQHSQSQVPPGPPGPPQHAGGYPGYPGYLPPGSMRPPA GFAPPPGAPYGYPGAPPPQTGYHPQHPQHPQHAQYLAWQQQQQQRYHQQQQQQQGPSG SQRPPYPYPSGPVPPGAQQNRLPPPPVQGAPSPSGTSASSGKQARYGTPVPPSRATAP TPQPLTSTMPVVPPSTSSQPTSSTGSYLANTLATPGPAQFPSSSSQPSQHTMSHQHQH QFPPGCIEATATAQVQLKRRKVYARELINATPRRLIMSLRSGLEVEAIWAINALNVLL YDDTNPQPSLQQMPGLVNVIVEHLYATLSILFPTEFHLTEPGKPIILDDSKEILDGLI KTEQNGGMKTMVDKMPVVPRKGSDKTAKFTMVSMSRNGLQVHFRDETIPVSLQKRVTR EHTDKDAAMFLDESITSKYVAERNSMGLGGGLAERIATRLRDKLLHEKTRPRPVFSKY LGDDETEKDANLEDKIIKEEVLENGNEVLLMRGAKPEELSDCKHEVELALPRPIALSP KSKAMEDLAHRALALSNILRGFSFVPGSDALMARNEALLFIIGRFMRLNVNERKIVSK RPKIVLDEDELKNEPKTLTEDEKRAKEKSVLDDVDATRAQMIETANQLRDDAFVMLTH MSVSLNLYELPDPIAYPIYDGLLRWAVSRVPEATDSSALAPVSPRDYSLEIMCKMVVI ERNVDMFLSTGSWSRVEQFVHILSRLLTMNEETHYREFAIVILNALCIASEAVCYICA METNTIAHLILFIDSADQNMHQVMQAHGMAALRDNPELMGTSVGMLRRAASMLRLLVK VPKSYKIYLKHQTRLLQFTMSQLMDSRVAGMVADTLYEIQEYVKEFGEDVPEPLKITY SEGMVYYSSFGSHALIKLFPGYQPNLMEEKEATTSTVEIDKLSNVEKTDSPKTENALE ASTTPSDSIQGNGTVECETNRPSSSEDIVSPYENNHKNEEEDLKKDTDEGESCDGYES DSLRLSQKRSAAALIDEVSQSRSPPSAKRTCLSNGFDKSKSSVSTNGTLVEAQNDGAM TTAVA" CDS join(123227..123282,123328..123387,123431..123868, 124042..124432) /gene="Cbr-hpo-32" /locus_tag="CBG_12338" /standard_name="CBG12338" /product="Protein CBR-HPO-32" /note="C. briggsae CBR-HPO-32 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFL3" /protein_id="CAP31330.2" /translation="MTESCVSFSILTDKYGELKITLDSAEKNFSSDIDTFSQGLSPSP SIKSLNCTNNSEDLCAGKRRRIVSSSTESLLTTDSFFDKEEVVLRSSTPVSETSDETE SLSDVSFTSCVSRVSELSITTSSSQETVTSKNISLKAKNVNYFSEIHYGHRRKSITYE EKNKERYGGWAEGDWRSAMKPKETKSDRANYKSRIPALADRPSYHSSSSGRVYPANPV TYPTKSYVSAVPLSVSNYKVIFSFRQVSNQSASRNVPLNNVQQPIKLIIATNSNGNMK LVLKYVCYGRAHFQNSFLKSKDRRVVVYFWRIGAFGKN" CDS complement(join(124732..124894,124939..125047, 125086..125241,125288..125393,125439..125506, 125559..126007,126055..126164,126213..126431, 126479..126786,126837..126893,126942..126984)) /gene="CBG12339" /locus_tag="CBG_12339" /standard_name="CBG12339" /product="Protein CBG12339" /note="contains similarity to Pfam domains PF03143 (Elongation factor Tu C-terminal domain) , PF00009 (Elongation factor Tu GTP binding domain) contains similarity to Interpro domains IPR000795 (Protein synthesis factor, GTP-binding), IPR004160 (Translation elongation factor EFTu/EF1A, C-terminal)" /note="Predicted" /db_xref="GOA:A8XFL4" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004160" /db_xref="InterPro:IPR009000" /db_xref="InterPro:IPR009001" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8XFL4" /protein_id="CAP31331.2" /translation="MSRHRNIRNINLEDEMDDDYDDYDNYEDEEESESLYTYDRNSLS ANYYTYLTDSGRNSPAPPAPPSSNASSSYYPPVSTAAPTAGPASAVPSSIVRNLTAPS LQQQKPSKHPNSRPSTPQAGSNLNTPKRTQQVKNLQTEAASPSGSRVSSEVDLSTFRR NQLQNIAKATSVPRKAVKPRAVEKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDTRTI DKFRHEAARNGKASFAYAWVLDETEEERERGVTMDIGRTSFETTNHRIVLLDAPGHKD FISNMITGTSQADAAILVINATTGEFETGFENGGQTKEHALLLRSLGVTQLVVAVNKL DTVDWSMDRFEEIRNNLTVFLTRQAGFSKPKFVPVSGFTGENLVKRMDLSWYDGPCLV ELIDSFKAQEPQSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMPSVTPA TVKECANNDGWKHCFAGDFILLTLQGTFEPESVQAGSVIVRSDRILLSRRKSLKCGAK SELYSHSLCMPCTFTKLIYTINKSNGEVLKQRPRFLAKGSTAVVEIETEHDVAIEAFT SCRAFGRATFRSGGNTIAAGIVEKVITPQ" CDS complement(join(127184..127336,127595..127744, 127792..127956,128000..128070,128123..128342, 128389..128477,128524..128587,128635..128715)) /gene="Cbr-mrps-15" /locus_tag="CBG_12340" /standard_name="CBG12340" /product="Protein CBR-MRPS-15" /note="C. briggsae CBR-MRPS-15 protein ;" /note="Predicted" /db_xref="InterPro:IPR009068" /db_xref="UniProtKB/TrEMBL:A8XFL5" /protein_id="CAP31332.1" /translation="MINLRRLVHTSSQLDRGRTAFYNIHQKVTDPAKQDPDFFEKKAR ELPLDQNYIDALSKLYYEKIGSERDLGLKAADNLILEKTEFGLPRIEKSKIRAKYEDL DVLSSAPDSVKKIFSVEMATRKELSQEWKNSLINSVRQHSLDGNSLEMKIAWLTALIR HWSLLVNDIGQETKKKPTWLTHRIWLVINERRKSLRILRERNETAFEKTIAALKISYH VPKQPAHVKTRKAWAEAQLKLRVENEKEKRLEQLHEEYDKQVEEHKRETQEKKRTLNN ELNKLAEEMHRIDVIEGKSFKTAGKYEPSLISSLTESVVHSNLFYHPPPTMTEK" CDS join(129320..129544,129590..129760) /gene="Cbr-asg-1" /locus_tag="CBG_12341" /standard_name="CBG12341" /product="Protein CBR-ASG-1" /note="C. briggsae CBR-ASG-1 protein; contains similarity to Pfam domain PF04718 Mitochondrial ATP synthase g subunit contains similarity to Interpro domains IPR016702 (Mitochondrial ATP synthase subunit g, animal), IPR006808 (ATPase, F0 complex, subunit G, mitochondrial)" /note="Predicted" /db_xref="GOA:A8XFL6" /db_xref="InterPro:IPR006808" /db_xref="UniProtKB/TrEMBL:A8XFL6" /protein_id="CAP31333.1" /translation="MATHKLSFFEKIANTTGALYRHQAQQFPRRLAILKAVGKHELAP PRTADLPAIKADWAKVQKFIQSKQYSQLTVKEGLVYTAVALEVVFWFFVGEMVGRRYV YGYLVPSDYVSKDTKAKVAEQKRLAALEA" CDS complement(join(129883..130042,130088..130378, 130425..130542,130586..130680,130729..130844, 130893..131142,131185..131231)) /gene="CBG12342" /locus_tag="CBG_12342" /standard_name="CBG12342" /product="Protein CBG12342" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFL7" /protein_id="CAP31334.2" /translation="MKQRYNLTDEQFEEEKRIAQKQLKNWEEHRKERVLQIFQSNSEY VSKSSKSDVQHPKMARANTVFNSRGEKVDVEFGRLREFYLYTLAPCKEFVSIRDHTAH DKELTGLRAKQKIILENRKDKQATKNKLTEYERSKSVYEDPIAPRHVKAVKPDQKEAI EDTAPIDKFISNTTDETHKQFPESWYHQSITRTQLKPGKMNYWVGNEEEEDLSVDDDP EGKYTVTVEKIIEVLSGGKVKDSGVMEPVGNTAMTDSVVSLQTRYKKTSGKESTFLNT MKGTIDFMKSEIGKENAPGSNTITQDEPTDAPNQITYASTVTANVFKGNRLKRQYTAR KDVETFEENRKDYTREAGEETSGI" CDS complement(join(131641..131922,131966..132301, 132347..132484)) /gene="Cbr-pbs-7" /locus_tag="CBG_12343" /standard_name="CBG12343" /product="Protein CBR-PBS-7" /note="C. briggsae CBR-PBS-7 protein; contains similarity to Pfam domain PF00227 Proteasome subunit contains similarity to Interpro domains IPR001353 (Proteasome, subunit alpha/beta), IPR016295 (Proteasome endopeptidase complex, beta subunit)" /note="Predicted" /db_xref="GOA:A8XFL8" /db_xref="InterPro:IPR001353" /db_xref="InterPro:IPR016295" /db_xref="InterPro:IPR029055" /db_xref="UniProtKB/TrEMBL:A8XFL8" /protein_id="CAP31335.1" /translation="MNSHEEVQRTLNPTCTGTSVIALQYKTGVVVLTDRVVSYGKMAR YKNVSRQYKVNENVLIAFGGDHADFHGFKMSSNAKYFSGNASIKILGRKHSTDTSLAF STEGENFLAHAIVKIRIFRRCKMNPVWNTLVVAGVEEEEKNNKETSTPFIGVITQKGC AYQVKHIATGLGAYLLNQAVEDEWRKKGEDLSREDAEAVLRKSLELTLYHDCVADNEF EIGRVDATEGVVLGKEEKIIGDWSIAETNCQYE" CDS join(132774..133153,133199..133246,133290..133455, 133858..133992) /gene="CBG12344" /locus_tag="CBG_12344" /standard_name="CBG12344" /product="Protein CBG12344" /note="contains similarity to Pfam domain PF07572 Bucentaur or craniofacial development contains similarity to Interpro domain IPR011421 (Craniofacial development protein 1/Bucentaur)" /note="Predicted" /db_xref="InterPro:IPR011421" /db_xref="UniProtKB/TrEMBL:A8XFL9" /protein_id="CAP31336.1" /translation="MLSPREVEEDDYNSSSDEDYDPTKDTELNPQDEVRFPRYRVFIA HSPEQIDDAEEGDLEAEDDVEQLKKESNTEKSTDKSAAAPPDNKVDVDAIFAALTGQA PPSSSSSSEPSSSQGEAKVYPKVAQSSSSTSAESPKVYPKKPQASEKTSQPENVTVGK KRVGLLDAAKALSKRSKMSVLERSDQDWKAFTAQNNLKEDLESHNRGKGGYLNKMEFL DRADNRQFEKERAFRASARKDTNH" CDS complement(join(134738..134794,135117..135183, 135238..135554,135605..135883,135937..136026, 136074..136352,136409..136533,136590..136659, 136754..136852,137151..137268,137334..137371)) /gene="Cbr-tlf-1" /locus_tag="CBG_12345" /standard_name="CBG12345" /product="Protein CBR-TLF-1" /note="C. briggsae CBR-TLF-1 protein; contains similarity to Pfam domain PF00352 Transcription factor TFIID (or TATA-binding protein, TBP) contains similarity to Interpro domain IPR000814 (TATA-box binding protein)" /note="Predicted" /db_xref="GOA:A8XFM0" /db_xref="InterPro:IPR000814" /db_xref="InterPro:IPR012295" /db_xref="InterPro:IPR015445" /db_xref="UniProtKB/TrEMBL:A8XFM0" /protein_id="CAP31337.1" /translation="MQMGDHQMMGNQRAFVQKVIPAPNGGGVPQNVTYVQNQGVRMVH PEINGQQRIMQPIARQVPQNGTGPHFARQNPAGQQFQPNYGGTIAGRSVAVRAVQVQG GSQVYQRTTGGIQVVAQGSQSQPRQMYMATNNGQQGVPVVQGQRIIQQGQQQHPSQQH FSRPQQTQNQMLMQQHHRQQNLVQQPSQQHQMNQQPQMVRQQIMPQHPAPIPQPHMQQ RSQQQVYGQPGMNLAVPLREPSPEPVVIKTEPQPEVEVFKKEEEPMPDDSDIDIQIRN VVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRNPGCYIKVYSSGKVYIVGCRS EDDCRRAARSIARHVQRVMGKTKEKVSIRNYRVNNVLATCRLPFGIKIEEVAAKYPAE STYEPELSVGLVWRSTTPKATLRIHTTGSITVTGASSEADVLEVLSKIYPIVLDFRCH ERAKGNVAAQKKRKRKAPTNKGTTIKRQRFDDANYGNSGVINNQVYFSDEDEDLYDDL DLED" CDS join(138045..138280,138323..138510,138558..138654, 138701..138836,138883..139004,139052..139310, 139354..139437,139483..139812,139884..139982, 140026..140313) /gene="Cbr-cdk-8" /locus_tag="CBG_12346" /standard_name="CBG12346" /product="Protein CBR-CDK-8" /note="C. briggsae CBR-CDK-8 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:P0C661" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="UniProtKB/Swiss-Prot:P0C661" /protein_id="CAP31338.3" /translation="MIDENFKKKLAVSRERVEDLFYFENSKEIGRGTYGLVYKAVPKH SNGRFPNKEYALKMIEGQGFSMSACREIALFRELRHPNLICLQRVFLTNEKKVWLLLD YAEHDLWHVIKHHRTAKTKKVPIMVPRNMVKNILFQILSGMHYLHSNWVLHRDLKPAN ILLMGDGGPDMRGRVKIADLGFSRIFANPLKPMAELDPVVVTFWYRAPELLLGAKHYT KAIDVWAIGCIFAELLTAEPLFFCKEEDIKAQNPYHYDQVKRIFHLLGYPSDTDWPDM KKMPDHQRLLNDARNEGTPIQTFPNSLQRYFDKWKINSQSSPYRLLVKLLTVDPLKRV SCEEAMNDIYFRKMERPPRETDDVFNRYPIPYAKKEQQITIPIDQFQQQQQQQQQQQQ QQQQQQQQQQQQQMQQPQIGPPQMMGQPQMGQPQMGQPQMGQPQMGQPQMGQPQMVPS QMGQPPMGGPHPGVVAPDGHAHQMMQQQHQSQHHMQYQQMHDSMQGGMDDGGPQAKMM RMGNVPVGRYGPMGPPYGPQDFHAPQGPPMMQMMPQPGPSGYYQQRPGQPPGPGPQGY MNPQMGMTMGMRPQGVPQQAYMPGRGMPPPQGPNPQQQQQWQQYHR" CDS complement(join(<140730..140794,141139..141269, 141311..141393,141439..141743,141790..141909, 142912..143102,143350..143961,144597..144732, 145233..145301,145327..145659,148890..148976, 149273..149430,149480..149553,149600..149697, 149854..149963,155245..155341,155388..155527, 155945..156411,157001..157259,157313..157507, 158321..158354)) /gene="Cbr-cle-1" /locus_tag="CBG_12347" /standard_name="CBG12347a" /product="Protein CBR-CLE-1, isoform a" /note="C. briggsae CBR-CLE-1 protein; contains similarity to Pfam domains PF06482 (Collagenase NC10 and Endostatin) (2), PF00041 (Fibronectin type III domain) (2)contains similarity to Interpro domains IPR003961 (Fibronectin, type III), IPR010515 (Collagenase NC10/endostatin)" /note="Partially confirmed by transcript evidence" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR010515" /db_xref="InterPro:IPR013320" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="InterPro:IPR036116" /db_xref="UniProtKB/TrEMBL:H8WGV4" /protein_id="CCG58680.1" /translation="MYFSGQNLILRKDRVPNAPQNVRVKTQSTSATLWWDAPPDPTVL IRGYTVEYGEGSISQRILIEGPDSTSFTVTRLAPNTNYVFAVSAYNEAEGEDGTKVMV AAKTRPAEGLQTEKLWPPTSVRARIEEKSLGGSAIVSWDDPNPENAADNSIDATQRQY VINYGIYESDTQQKVRSNAKAVRLTGLIPGKEYEVAVKVVAGDGSESPWSIRDLFLVP ESIISICLLQIQTNSFSAKKVSKFDWFCRLNDTEMCSIVSSPHWKLCTAKHDTYTQRD AGACPRVQYPSSPAHLTTPPISLPDAQHLCFYFRFALLNFHPGQMKVEIHPDGDTSNR QIVWKTRMANVRTHVVQNVYIPFSQQIRPFKVSVSLKWDGQPMPRVIVHEMDALSGGC SERSTDTETEVDLLAPVKASLNADARVFRAKGIESLPAIGLQRGVEIAVPYRLYLPRN FFKQFSLLATIKPMDKRGGYLFAAVNAYDSAVDIGLLIEPAGTKQTNISLIVRSVAIV SFLVEDFSQQWTQFALEVIDQTVTFYFKCRRFASRQVTSLPDFSFDEAEKLYIASAGP IIDNGFEMRRLLALFVVLLLIFVFVHGGSEELDNEDFPLLSSEQQASSPEERKEFSTS PEDSSIPGTVFHVHIPLADARVRQARASSEEREIVTENVMLPVEIVEVIDDGTGFEDD GKGAIQELKLIDDASQGSRQCDEQWNVEGSGTPEGLKKDQESSELQKISELPPTPAPP PPYPTPHLAAPQDLRSYEQQAATTPFQGVPSPQGQCTQVCRGETGPQGPPGKDGIPGS HGAPGHQGERGSDGSPGVHGSRGEQGPQGPPGMPGLAGPPGPPGTGSVTGSGGVAQPG PPGPPGLPGAPGRDGAAGVEGQRGPHGPPGPKGDDGVSMESLTDGDIERIARRVAAIQ KESQEPMRGDLPEYNPRVHSYTTKGEKGERGAPGAPGAPAYGAITTGTAVNVHATTVE LFASARATSVGQLAFATSSQQLFIRVTNGWKEIQLTHFHPFLETRQSTQNSRQNDASQ PARPVVSPWHPRANLEEPQKDSGPHNKDRVIHMIALSQPFAGNIHGLRGADLQCYREA RASGYTTTFRAMLSSNVQDLVKIVHSVDHDTPVVNIAGHHLFASWRSFVNGAKINQHA RLFSFDRHDVLNDSRWPDKRVWHGSKEGGIRADQYCDGWRRSDASITSLAGQIYSNTT IFQSSGPSTCENKLVILCVEVIAKIIYYSNMSKYHSDRILRLNRITTDFK" CDS complement(join(<140730..140794,141139..141269, 141311..141393,141439..141743,141790..141909, 142912..143102,143350..143961,144463..144531, 144597..144732,145086..145130,145233..145301, 145327..145659,148890..148976,149273..149430, 149480..149553,149600..149697,149854..149963, 155245..155341,155388..155527,155945..156411, 157001..157259,157313..157507,158321..158354)) /gene="Cbr-cle-1" /locus_tag="CBG_12347" /standard_name="CBG12347b" /product="Protein CBR-CLE-1, isoform b" /note="C. briggsae CBR-CLE-1 protein; contains similarity to Pfam domains PF06482 (Collagenase NC10 and Endostatin) (2), PF00041 (Fibronectin type III domain) (2)contains similarity to Interpro domains IPR003961 (Fibronectin, type III), IPR010515 (Collagenase NC10/endostatin)" /note="Partially confirmed by transcript evidence" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR010515" /db_xref="InterPro:IPR013320" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="InterPro:IPR036116" /db_xref="UniProtKB/TrEMBL:H8WGV5" /protein_id="CCG58681.1" /translation="MYFSGQNLILRKDRVPNAPQNVRVKTQSTSATLWWDAPPDPTVL IRGYTVEYGEGSISQRILIEGPDSTSFTVTRLAPNTNYVFAVSAYNEAEGEDGTKVMV AAKTRPAEGLQTEKLWPPTSVRARIEEKSLGGSAIVSWDDPNPENAADNSIDATQRQY VINYGIYESDTQQKVRSNAKAVRLTGLIPGKEYEVAVKVVAGDGSESPWSIRDLFLVP ESIISICLLQIQTNSFSAKKVSKFDWFCRLNDTEMCSIVSSPHWKLCTAKHDTYTQRD AGACPRVQYPSSPAHLTTPPISLPDAQHLCFYFRFALLNFHPGQMKVEIHPDGDTSNR QIVWKTRMANVRTHVVQNVYIPFSQQIRPFKVSVSLKWDGQPMPRVIVHEMDALSGGC SERSTDTETEVDLLAPVKASLNADARVFRAKGIESLPAIGLQRGVEIAVPYRLYLPRN FFKQFSLLATIKPMDKRGGYLFAAVNAYDSAVDIGLLIEPAGTKQTNISLIVRSVAIV SFLVEDFSQQWTQFALEVIDQTVTFYFKCRRFASRQVTSLPDFSFDEAEKLYIASAGP IIDNGFEMRRLLALFVVLLLIFVFVHGGSEELDNEDFPLLSSEQQASSPEERKEFSTS PEDSSIPGTVFHVHIPLADARVRQARASSEEREIVTENVMLPVEIVEVIDDGTGFEDD GKGAIQELKLIDDASQGSRQCDEQWWRRRKLEKERDQTRKNVEGSGTPEGLKKDQESS ELQKISELPPTPAPPPPYPTPHLAAPQDLFLSDDSLVVPFIGGYGSPATRDLRSYEQQ AATTPFQGVPSPQGQCTQVCRGETGPQGPPGKDGIPGSHGAPGHQGERGSDGSPGVHG SRGEQGPQGPPGMPGLAGPPGPPGTGSVTGSGGVAQPGPPGPPGLPGAPGRDGAAGVE GQRGPHGPPGPKGDDGVSMESLTDGDIERIARRVAAIQKESQEPMRGDLPEYNPRVHS YTTKGEKGERGAPGAPGAPAYGAITTGTAVNVHATTVELFASARATSVGQLAFATSSQ QLFIRVTNGWKEIQLTHFHPFLETRQSTQNSRQNDASQPARPVVSPWHPRANLEEPQK DSGPHNKDRVIHMIALSQPFAGNIHGLRGADLQCYREARASGYTTTFRAMLSSNVQDL VKIVHSVDHDTPVVNIAGHHLFASWRSFVNGAKINQHARLFSFDRHDVLNDSRWPDKR VWHGSKEGGIRADQYCDGWRRSDASITSLAGQIYSNTTIFQSSGPSTCENKLVILCVE VIAKIIYYSNMSKYHSDRILRLNRITTDFK" CDS complement(join(<140730..140794,141139..141269, 141311..141393,141439..141743,141790..141909, 142912..143102,143350..143961,144597..144732, 145086..145130,145233..145301,145327..145659, 148890..148976,149273..149430,149480..149553, 149600..149697,149854..149963,155245..155341, 155388..155527,155945..156411,157001..157259, 157313..157507,158321..158354)) /gene="Cbr-cle-1" /locus_tag="CBG_12347" /standard_name="CBG12347c" /product="Protein CBR-CLE-1, isoform c" /note="C. briggsae CBR-CLE-1 protein; contains similarity to Pfam domains PF06482 (Collagenase NC10 and Endostatin) (2), PF00041 (Fibronectin type III domain) (2), PF01391 (Collagen triple helix repeat (20 copies)) contains similarity to Interpro domains IPR003961 (Fibronectin, type III), IPR010515 (Collagenase NC10/endostatin), IPR008160 (Collagen triple helix repeat)" /note="Partially confirmed by transcript evidence" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR008160" /db_xref="InterPro:IPR010515" /db_xref="InterPro:IPR013320" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="InterPro:IPR036116" /db_xref="UniProtKB/TrEMBL:H8WGV6" /protein_id="CCG58682.1" /translation="MYFSGQNLILRKDRVPNAPQNVRVKTQSTSATLWWDAPPDPTVL IRGYTVEYGEGSISQRILIEGPDSTSFTVTRLAPNTNYVFAVSAYNEAEGEDGTKVMV AAKTRPAEGLQTEKLWPPTSVRARIEEKSLGGSAIVSWDDPNPENAADNSIDATQRQY VINYGIYESDTQQKVRSNAKAVRLTGLIPGKEYEVAVKVVAGDGSESPWSIRDLFLVP ESIISICLLQIQTNSFSAKKVSKFDWFCRLNDTEMCSIVSSPHWKLCTAKHDTYTQRD AGACPRVQYPSSPAHLTTPPISLPDAQHLCFYFRFALLNFHPGQMKVEIHPDGDTSNR QIVWKTRMANVRTHVVQNVYIPFSQQIRPFKVSVSLKWDGQPMPRVIVHEMDALSGGC SERSTDTETEVDLLAPVKASLNADARVFRAKGIESLPAIGLQRGVEIAVPYRLYLPRN FFKQFSLLATIKPMDKRGGYLFAAVNAYDSAVDIGLLIEPAGTKQTNISLIVRSVAIV SFLVEDFSQQWTQFALEVIDQTVTFYFKCRRFASRQVTSLPDFSFDEAEKLYIASAGP IIDNGFEMRRLLALFVVLLLIFVFVHGGSEELDNEDFPLLSSEQQASSPEERKEFSTS PEDSSIPGTVFHVHIPLADARVRQARASSEEREIVTENVMLPVEIVEVIDDGTGFEDD GKGAIQELKLIDDASQGSRQCDEQWWRRRKLEKERDQTRKNVEGSGTPEGLKKDQESS ELQKISELPPTPAPPPPYPTPHLAAPQDLRSYEQQAATTPFQGVPSPQGQCTQVCRGE TGPQGPPGKDGIPGSHGAPGHQGERGSDGSPGVHGSRGEQGPQGPPGMPGLAGPPGPP GTGSVTGSGGVAQPGPPGPPGLPGAPGRDGAAGVEGQRGPHGPPGPKGDDGVSMESLT DGDIERIARRVAAIQKESQEPMRGDLPEYNPRVHSYTTKGEKGERGAPGAPGAPAYGA ITTGTAVNVHATTVELFASARATSVGQLAFATSSQQLFIRVTNGWKEIQLTHFHPFLE TRQSTQNSRQNDASQPARPVVSPWHPRANLEEPQKDSGPHNKDRVIHMIALSQPFAGN IHGLRGADLQCYREARASGYTTTFRAMLSSNVQDLVKIVHSVDHDTPVVNIAGHHLFA SWRSFVNGAKINQHARLFSFDRHDVLNDSRWPDKRVWHGSKEGGIRADQYCDGWRRSD ASITSLAGQIYSNTTIFQSSGPSTCENKLVILCVEVIAKIIYYSNMSKYHSDRILRLN RITTDFK" CDS complement(join(160892..161005,161095..161391, 161435..161686,161858..161956)) /gene="Cbr-pas-4" /locus_tag="CBG_12349" /standard_name="CBG12349" /product="Protein CBR-PAS-4" /note="C. briggsae CBR-PAS-4 protein; contains similarity to Pfam domains PF10584 (Proteasome subunit A N-terminal signature) , PF00227 (Proteasome subunit) contains similarity to Interpro domains IPR001353 (Proteasome, subunit alpha/beta), IPR000426 (Proteasome, alpha-subunit, N-terminal domain)" /note="Predicted" /db_xref="GOA:A8XFM4" /db_xref="InterPro:IPR000426" /db_xref="InterPro:IPR001353" /db_xref="InterPro:IPR023332" /db_xref="InterPro:IPR029055" /db_xref="UniProtKB/TrEMBL:A8XFM4" /protein_id="CAP31341.1" /translation="MNRYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVI GVEKKSIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDP VTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVAN STGRGEKPVREYLEEHYSEETTADEATTLKLVVKSLAQVVPPGSQNIEIAVMKKVNDE LQQRVLTIEEIEALLKVVEAERVAAEAEEAASKKK" CDS join(162308..162430,162577..162711,162758..162877, 162928..163175,163227..163315,163477..163604) /gene="Cbr-rpb-3" /locus_tag="CBG_12350" /standard_name="CBG12350" /product="Protein CBR-RPB-3" /note="C. briggsae CBR-RPB-3 protein; contains similarity to Pfam domains PF01000 (RNA polymerase Rpb3/RpoA insert domain) , PF01193 (RNA polymerase Rpb3/Rpb11 dimerisation domain) contains similarity to Interpro domains IPR011263 (DNA-directed RNA polymerase, RpoA/D/Rpb3-type), IPR011262 (DNA-directed RNA polymerase, insert domain), IPR011261 (DNA-directed RNA polymerase, dimerisation)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XFM5" /db_xref="InterPro:IPR011262" /db_xref="InterPro:IPR011263" /db_xref="InterPro:IPR036603" /db_xref="InterPro:IPR036643" /db_xref="UniProtKB/TrEMBL:A8XFM5" /protein_id="CAP31342.2" /translation="MPYANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPT IAIDWVQIETNTSVLHDEFIAHRMGLIPFLSDYHVEKMQYTRCECAEFCDECSIPFIL QTKCTDEATLAVTTADLRPLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKG QELNLKAYAKKGFGKEHAKWNPTCGVAFEYDPDNALRHTIYPNVEEWPKSDHSSLPED SAEKEAPFDQNAKPNKFWFSIEGTGALPVQRIVTMGIGILKRKLEELNMALSNELQAH AQQQ" CDS join(163796..163938,163983..164034,164185..164289) /gene="CBG25151" /locus_tag="CBG_25151" /standard_name="CBG25151" /product="Protein CBG25151" /note="Predicted" /db_xref="GOA:B0K086" /db_xref="InterPro:IPR019367" /db_xref="UniProtKB/TrEMBL:B0K086" /protein_id="CAQ00068.1" /translation="MVCGDCEKKLGKIVGVDPYRNKKVNRNADGTGPKTMTTKNRLIG VQKKATIVGAKCKLCKMLIHQPGSHYCSTCAYQKGICAMCGKKILNTKGLRQSIT" CDS complement(join(164673..164856,165329..165647, 165693..165744)) /gene="CBG25269" /locus_tag="CBG_25269" /standard_name="CBG25269" /product="Protein CBG25269" /note="Predicted" /db_xref="GOA:B6III7" /db_xref="UniProtKB/TrEMBL:B6III7" /protein_id="CAR99717.1" /translation="MSRAADIALICACCCGLQVFIAMTCFLLAVPIYLLVVGIVEMDS CAADSRIPVWMICTAALMIIERMMESVNQAMDRKFLNNYPKPEIEDGDIKIAEWEKLR SENKSKALFGLISLSRLAIFVSTIVGSVFVFSSYSTRSQCDGLLYWSAFVYCIVTLSL SALGLIILGGMCLVLVILATKSRS" CDS complement(join(167040..167226,167275..167596, 167643..167694)) /gene="CBG12352" /locus_tag="CBG_12352" /standard_name="CBG12352" /product="Protein CBG12352" /note="Predicted" /db_xref="GOA:A8XF82" /db_xref="UniProtKB/TrEMBL:A8XF82" /protein_id="CAP31343.2" /translation="MPSDIGLTEKLAFLSVLLLIGITIICLAIPIVMLTIGILKMNDC EADPRLPMWMIVMAILMLAERFTGSINTVKDRVFLNENPKPKFSEDGGSEELLDWNNR RESIKSTVVVSIGSLIRLIQFIAFVVGCFWVFGISSERDRCNVYVFWASYIYCILSIT FYALGACLGPYCLRLGTEEKNKINYY" CDS complement(join(168288..168462,168511..168628, 168687..168824,168871..168922)) /gene="CBG12353" /locus_tag="CBG_12353" /standard_name="CBG12353" /product="Protein CBG12353" /note="Predicted" /db_xref="GOA:A8XF83" /db_xref="UniProtKB/TrEMBL:A8XF83" /protein_id="CAP31344.2" /translation="MPSKSAVTSKMAFLTMLPCVIVITLFCLAVPLTMITIGITKMDD CEADPRIPIWMIVIAVRETQFSEDGGNDTLVDWKNRRKNNKSTLFAFLGSFVRLIQFV AFVVGCFWVFGIYSDSDRCNGYVFWTSYFYCLISIIFYIVGACVLGCVCCCIAVLSSD " CDS complement(join(169955..170115,170308..170484, 170533..170563)) /gene="CBG25270" /locus_tag="CBG_25270" /standard_name="CBG25270" /product="Protein CBG25270" /note="Predicted" /db_xref="GOA:B6III8" /db_xref="UniProtKB/TrEMBL:B6III8" /protein_id="CAR99718.1" /translation="MVTMCACCILPCYISIMTVFLVVPVLFIVVGIIKFNDFPIDSRI PIWMISIAGAILLERVVEAIKTMGDKQLSAVSSHFQFTNNERNAMDSYSGIHLFIVPY PLPSTVFSFYSSLVFAVYLH" CDS join(172195..172237,172284..172548,174730..174970) /gene="CBG25271" /locus_tag="CBG_25271" /standard_name="CBG25271" /product="Protein CBG25271" /note="Predicted" /db_xref="GOA:B6III9" /db_xref="UniProtKB/TrEMBL:B6III9" /protein_id="CAR99719.1" /translation="MTKSSSGLACCCCFPVFLFLLVMAFGIPSFLMFVGVSKLDHCPI EPKIPKWMICVASLIFLQVILESVRPFKDRSMRCFDCSIDCCSLLSLLLYISRLTLFG VTILGCVLVYSIFQFQNQCDSLLYFTAFIYCVLSLICSVIACVFWICCCCFLVVRGGY RIVNTDVYVNENEFVTVGKRPV" assembly_gap 173805..174579 /estimated_length=775 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(175243..175350,175394..175601, 175656..175886,175932..176049,176094..176261, 176307..176470,176513..176628,176674..176811, 176868..177020,177068..177154)) /gene="Cbr-prp-4" /locus_tag="CBG_12355" /standard_name="CBG12355" /product="Protein CBR-PRP-4" /note="C. briggsae CBR-PRP-4 protein; contains similarity to Pfam domains PF08799 (pre-mRNA processing factor 4 (PRP4) like) , PF00400 (WD domain, G-beta repeat) (7)contains similarity to Interpro domains IPR019775 (WD40 repeat, conserved site), IPR014906 (Pre-mRNA processing factor 4 (PRP4)-like), IPR003648 (Splicing factor motif), IPR001680 (WD40 repeat), IPR020472 (G-protein beta WD-40 repeat)" /note="Predicted" /db_xref="GOA:A8XF84" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR014906" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR019775" /db_xref="InterPro:IPR020472" /db_xref="InterPro:IPR036285" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:A8XF84" /protein_id="CAP31345.1" /translation="MGEDDKFAVPAPPKQFGSLANADSVNAILNSAQKSHGPTVSLER MEVTNQADSRHDAEMLAEFDRRRRARTLTLPTDDVQVKLKLRALNQPICLFGEDALDR RERLRALLSTMSEDEIAAVLHTDEVNADKADEETVTWYHRGPVELRKARVAIADFSLR KAKLRLEKAREDAAQPAHEKALARQEAHKWVQQINLHSSQVADTRPVAFCEFSSDSQH IVTAGWSGSVAVWKREQCAQEMKYTGHSAQAGCARFHPGAFTQNDASSLNVVSGAYDG TVLLWSLTQETPIGEIEKHPQRVSKLAFHPNGLHLATACFDSTWRMYDLITKKELLFQ EGHSKSVADVAFHPDGSVALTGGHDCYGRVWDMRTGRCIMFLDGHTKEIHSVEWMPNG YEMITGSSDNSMKVWDLRMRRNTYTMPAHTSVVTRVRADAAGQYLVSASFDCTLKMWS TTGWQPLRQLQGHDTRILCVDISPDGQWMCSSAFDRTFKLWAQSDY" CDS join(177877..178011,178057..178187,178238..178390, 178437..178587) /gene="CBG12356" /locus_tag="CBG_12356" /standard_name="CBG12356" /product="Protein CBG12356" /note="contains similarity to Pfam domain PF00186 Dihydrofolate reductase contains similarity to Interpro domains IPR012259 (Dihydrofolate reductase), IPR001796 (Dihydrofolate reductase domain), IPR017925 (Dihydrofolate reductase conserved site)" /note="Predicted" /db_xref="GOA:A8XF85" /db_xref="InterPro:IPR001796" /db_xref="InterPro:IPR012259" /db_xref="InterPro:IPR017925" /db_xref="InterPro:IPR024072" /db_xref="UniProtKB/TrEMBL:A8XF85" /protein_id="CAP31346.1" /translation="MRKMNMIVAMDTEGGIGKNGVLPWRIRKDMQYFAAVTKKVSDPA KRNAVLMGRKCWESIPESRRPLPGRLNIVLSRQLEKQNTDNLIVVNSLESALKLLSEA PFVDSIETIWNIGGAEIYDLALRENLVDEIHLTRIHKNFEADVHLKSLDFNKLKKIID AEASSENSELFEENGLQFEIGKWKIIEHC" CDS join(178905..179016,179698..179876,180555..180655, 180712..180826,180892..181299,181343..181656, 181707..182230,182278..182517,182567..182688, 182744..182936,182986..183152,183262..183432, 183642..183723,184116..184337,184390..184547) /gene="Cbr-gls-1" /locus_tag="CBG_12357" /standard_name="CBG12357" /product="Protein CBR-GLS-1" /note="C. briggsae CBR-GLS-1 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XF86" /protein_id="CAP31347.1" /translation="MNGNPITTSGSAQNVPQNLQNANVPSSNQHNNNPASSNGTVTPA STATNTTTVPSGQQSNQSQNQQHHQKPTNTSSSQQTNSSKQPMKKTQQGEVEKISNSG GGSQGNQGNVGFRSSANKDQKAKEKEKEKSYQSRQGNQSNNHHHNPNHFTGGGGGGNP QNHRKKDNKNRDHSNQSHRGGAFSNNYTNHNQQSHGYSADTGKSARFPSNSSLSSSGT TPTLTVAPTPTPTSPSTTPVVQTPAKVAPAAATAVSPVITHESKTVQTDYVVVEEKEM PQVAKKDEDLCPYKNTKIKEMDTVIAFQEHDEWNKVELMCELISYLSPSDLRLLSNCI DGLTRPYVMQMKPIEKTANGVDPLGGFPPFICAPIPVLPSTFSPASSESVICNQRNMV NNLFSYQQHPPGIPPPLMPTVVFPVDEAVQHPSSSTPLNPPTSRETGSGTKSTSSTPI DISNQPDGQQQDSESGSNKGIGGSVSADLSVSKTTPELETNHNPAPNLVQSNSSSAKQ TGPQIPEESEKFFSNVKDIASYLYLLISVCASTNRRSAAKLSDYASNVLIREKSQIFE RIPNELDQIELLEEIGKTVVALIHHPAVTLDDKIKYIDIRDSLRTEHENLFRMYYSPE KVAERKRQAGILEGGVGELDDGEGSDDGDNEDVERRFDVNEPFYPSSGYQQPKPSSAP GTFFITRFIGRQIEKNENMFSIEIHWSDGDRTFAQRSREQIKGLQHRLLDEFGQQRSE KYTHHGMNSSFSSFDEDHKKLSTSTSTMETTFALSGDRIVPRLPREATPAQHVQYINE LSDLPARMMLSRVMCEEFNGTRARTDDEANELSDGLIFSRWKNPRAKCPQSFYNRDES GNINPQPYPKTIHPFLHSNIPQTQSQILLPSCSNCGGQHLMKNCEKATLLERKALAEH KMRYEAEGGPMSAAMSASTQAPGGMVPVYAQMHPQMHHPVFIDNQAMMNANHFTHHQH QQMIQSNMYLNGQYRPNGQFAESPMAMFYSPPPQVVSNCGNSSGNNSNNGNNGGGVNQ NSNFS" CDS complement(join(186195..186225,186315..186917, 186980..187551,187623..187879,187924..188067, 188118..188484)) /gene="CBG12358" /locus_tag="CBG_12358" /standard_name="CBG12358" /product="Protein CBG12358" /note="contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR017907 (Zinc finger, RING-type, conserved site)" /note="Predicted" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR017907" /db_xref="UniProtKB/TrEMBL:A8XF87" /protein_id="CAP31348.2" /translation="MSESAEVLSDADADYGTDTEIMQEEEDEGSDEEVLVGEDSPNLK IIKEAADSTQNCRVCYDEYHPTKNQARVLACGHTFCTRCVVSCGTHTNNAVIVGMKCP ECRKISDQVPATVPINFQFMQLLTALNLIKLPKTRKQELELPNYENFERLGAHIPINK LTENSLPDLFEHLKAVFNAIRIKAGKEPKMPKPFIAARISSELGKLNDAEKTTYRIIN ALKKLYTGELPRDYFDFSWQLENPLERLALRGDNDWMREMVVYRPPHLIEPEPPEPEV PEEEPVPDLDILLAREELAQAEADPNRNLHVVREAHLRRERESAQERQAAIRNEQFMR DLLDWNGQDPAFDNMSSNFRRRHLERTAEMQNAIRRSTDTLRNIENERRVAQGLPPFL EHDDVTVNDRDDESVASDDSSYIDDTVRSPPLPMTIGEGITIYRMIEIFSPRSLRQGT PALALPQNHRNLDALVQTIYPAESSVTDRLADCHLADLRVYGRANKVDVDHLLRCLRQ HSIRFASNVVEAPRVPAVRLRRQRPVAADEYNARLRDIRSRAKDALRGNRPPHPANAE EADLTVRLIVNLANSLGVRDKLLEAMLPVRTPEEEENEIFVMKNSGSGRQEVLFCTVC RCDVPVVSKQVHAQGRRHVAAMTNRPSYSRAHH" CDS join(191826..191882,191929..192136,192270..192355, 192405..192494,192543..192632,192682..192836, 193137..193309,193354..193491,193542..193900, 193949..194063,194113..194405,194519..194611) /gene="Cbr-imp-1" /locus_tag="CBG_12359" /standard_name="CBG12359" /product="Protein CBR-IMP-1" /note="C. briggsae CBR-IMP-1 protein; contains similarity to Pfam domain PF04258 Signal peptide peptidase contains similarity to Interpro domains IPR006639 (Peptidase A22, presenilin signal peptide), IPR007369 (Peptidase A22B, signal peptide peptidase)" /note="Predicted" /db_xref="GOA:A8XF88" /db_xref="InterPro:IPR006639" /db_xref="InterPro:IPR007369" /db_xref="UniProtKB/TrEMBL:A8XF88" /protein_id="CAP31349.2" /translation="MRIAIPNALFILLLVYISTTVTTQSREYSSHRGPFRTSYVFMTV HNKRTGEQSKSCVNYQQYLRDDTSSALIGYNFETAHPFVFKFWGDYRIEDDGTPCTRP FVQSHTAFRNASQFTIDTLKQHGASVSLLVLDRGRMFINTWKDYLFSDFFDPYINSSA AIPTFYIYRSDLIGKIMTVTNKEDMGEDNIEIRFHRPSGFPIDPSFIVIWLISMTCVA GGGFWAFNRHRAGKDLSLAQRMDEEEQKSNESAKKGFFDKFAGMVTIALMMVTLCGVL LLGYFFRSVLVIFFNIFLVIFGTCSLYGCIRGFFSNFSLSSHRWYKAKMGWMPTCCGL NNNRQYSEVFVSLVCLSFCVTWFVYRRQPYAFILLDIINIALCMHVLKCLRLPSLKWI SILMLCMFIYDAGMVFGTPYITSNGCSVMLEVATGLSCSAKEKGKGYPIPPVEQESVP EKFPMLMQVAHFNPMNECLDMEVELGFQFTILGLGDIVMPGYLVAHCFTMNGYSERSR LIYGIVSIVGYGAGLIVTFLALALMKTAQPALIYLVPSTLIPIILMAVCRGEFKNIWN GVPVDSAPLVSDSGDMVDGNKSITNSSAAMETASDELAESNSTSQENQPVNV" CDS complement(join(194919..195242,195289..195485, 195528..195618,195665..195811,196025..196426)) /gene="CBG12360" /locus_tag="CBG_12360" /standard_name="CBG12360" /product="Protein CBG12360" /note="Partially confirmed by transcript evidence" /db_xref="UniProtKB/TrEMBL:A8XF89" /protein_id="CAP31350.2" /translation="MCIELIAVMKTESMYFSVTIRKKSDNFDQYSDEDVQNNSVSGCS VSEINSEYTSSEYSTYSDTMSACSACFVYSPHSQLFVCVKENCGYALQQTVPVLSPSL FYRREKVFCGSCAFRGVHSPHKKFMKPAEPLAIPVIDYLSASESVYEWHSRLSMLNQT VRTLNDFRVQGYSYVKEQADKLLTAYSDVSRAVADDIKFKENEGFNIRNSRQTEHRIR MGIPCNQKDDENASLSSISSSSRKSSISSVTSTNTVLQVSVKTESETTVNGDREIATK PTNFVEETVRQTNIVMSRRFDVLRRFSTVAEAALQVADLLDSRIKCINHKKEVVSYLE KTYSIIWPSVVVPLTYAVFHFQAPTPLIVCRSRLLSRTNSPCLMCKFLLYLL" assembly_gap 196806..198543 /estimated_length=1738 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(199200..199331,199376..199552, 199600..199875)) /gene="CBG25272" /locus_tag="CBG_25272" /standard_name="CBG25272" /product="Protein CBG25272" /note="Predicted" /db_xref="GOA:B6IIJ0" /db_xref="UniProtKB/TrEMBL:B6IIJ0" /protein_id="CAR99720.1" /translation="MVAPINIMGLMFSIYFYTWLHPDLSKNVRIGLNQFKVDCMIYIG TILWLFVSMCIVAPYFTRRTNALAGNVGMAISSLGVILSHYLLENKWVWSGLMYICDI QLYAFSLGLALMGQWSIYHYDKNRAMYVAFPVVCNTIVVFMLYSVLETKDFNDVFPLS SFGVHTAFAILAQVAAPRLKTWNFFEYIKKNKRR" CDS complement(join(200247..200456,200572..200688)) /gene="Cbr-tin-13" /locus_tag="CBG_12362" /standard_name="CBG12362" /product="Protein CBR-TIN-13" /note="C. briggsae CBR-TIN-13 protein; contains similarity to Pfam domain PF02953 Tim10/DDP family zinc finger contains similarity to Interpro domain IPR004217 (Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like)" /note="Predicted" /db_xref="GOA:A8XF90" /db_xref="InterPro:IPR004217" /db_xref="InterPro:IPR035427" /db_xref="InterPro:IPR039238" /db_xref="UniProtKB/TrEMBL:A8XF90" /protein_id="CAP31351.1" /translation="MDQLLDVETLKNLSPEQQEQVINGVKQQAALANAQNLVTDISEK CTNKCITAPGSSLASGEKQCLQRCMDRFMESWNLVSQTLQKRLQDEMASSGGMSAGFG QGPSFS" CDS join(204013..204107,204197..204281,204333..204446, 204600..204833,204881..205921,205974..206102) /gene="Cbr-lmn-1" /locus_tag="CBG_12363" /standard_name="CBG12363" /product="Protein CBR-LMN-1" /note="C. briggsae CBR-LMN-1 protein; contains similarity to Pfam domains PF00932 (Lamin Tail Domain) , PF00038 (Intermediate filament protein) contains similarity to Interpro domains IPR001664 (Intermediate filament protein), IPR016044 (Filament), IPR001322 (Intermediate filament, C-terminal)" /note="Predicted" /db_xref="GOA:A8XF91" /db_xref="InterPro:IPR001322" /db_xref="InterPro:IPR036415" /db_xref="InterPro:IPR039008" /db_xref="InterPro:IPR042180" /db_xref="UniProtKB/TrEMBL:A8XF91" /protein_id="CAP31352.2" /translation="MASRKGARSSRIVSLERSANSSLSNGGGDESFGSTTLETSRLQE KDHLTSLNSRLAQYIDKVRQLEQENNRLQVQIRDIEVVEKKEKSNLADRFEAEKARLR RALDLAQDELAKYKIEYDAAKVEVKKLKPQVDKLERELAGAEEQALHAQSVADQSQAK QKTLQARNDKLVLENDDLKKQNITLRDTVEGLKKAVEDETLLRTAANNKIKALEEDLA FALQQHKGELEEVRHKRQVDMTTYAKQINDEYQSKLQDQIAEMRAQFQSNLAQNKTAF EDAYKNKLNDARERQEGAVSEALHLRARVRDLETSSSGNASLIERLRAELDTLKRSFQ EKLDDKDARISELNQEIERMMSEFHDLLDVKIQLDAELKTYQALLEGEEERLNLTQDT SKNASVHHVSFSSGAASAQRGVKRRRVVEVNGENQDIDYLNRRSKLNKETIGPVGIDE VDEEGKWVRVANNSEEDQSIGGYKLVVKAGNKEASFQFSARMKLAPHASATVWSAESG AVHNPPEVYVMKKQQWPIGENPSARLEDNEGDIVSSITVELSESSDPSDPADRCSIM" CDS complement(join(207946..208176,208920..209030)) /gene="Cbr-hlh-16" /locus_tag="CBG_12364" /standard_name="CBG12364" /product="Protein CBR-HLH-16" /note="C. briggsae CBR-HLH-16 protein; contains similarity to Pfam domain PF00010 Helix-loop-helix DNA-binding domain contains similarity to Interpro domain IPR011598 (Helix-loop-helix DNA-binding)" /note="Predicted" /db_xref="GOA:A8XF92" /db_xref="InterPro:IPR011598" /db_xref="InterPro:IPR036638" /db_xref="UniProtKB/TrEMBL:A8XF92" /protein_id="CAP31353.2" /translation="MSSTGSPPGAEEEFEPYVRRKRAEGGSRKKMQGLNEQEQNMLRN SINSRERRRMHELNDEFESLRECLPYPNEANSRRMSKANTLLLASNWIKHLSNANHKL QMELNAANAKV" CDS join(209456..209614,209821..210005,210053..210225, 210270..210526,210572..210752,210801..210954, 210997..211153,211209..211466,211515..211580, 211628..211750) /gene="Cbr-trt-1" /locus_tag="CBG_12365" /standard_name="CBG12365" /product="Protein CBR-TRT-1" /note="C. briggsae CBR-TRT-1 protein; contains similarity to Pfam domain PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) contains similarity to Interpro domain IPR000477 (Reverse transcriptase)" /note="Predicted" /db_xref="GOA:A8XF93" /db_xref="InterPro:IPR000477" /db_xref="InterPro:IPR003545" /db_xref="UniProtKB/TrEMBL:A8XF93" /protein_id="CAP31354.1" /translation="MKIISKKFEGFQDGETNNNGSLSKLHKELCDKPWNKILTKNGNL AILRNIFKRKMKTKLTYRHMSTFLTSSENLPKVQGTVVVEEVNRISKSLMSSRNTFEL RKLKPKKKKATVKDCHMYPDDIETLIDRIFHIFSLQNHIGNTNCGNLKNWVSKVLKSE GFHHLENFVYKEAPFARAFRCKKVMKNETPSSKRSIQVSIVNNLKSALSWWLLAALRQ VILPLKIQNKTAYVWRNAYLKHLKLGMSRFKKIYAVRRVDKARCLKSSASYSSLRFTI VSNKLRPIFRNRSKDRFKEVMEWKKVNSILAWCLEKHGIYRHTIQKTCEDILKFLKRN SDFSQVFGYTADVSKCFSTVRHGTVICIIERILDQRCDIHTVCGKGLDNKGFSKLLFV SRDSEKEARLALTRKMQSKRVEHHQVVYVTKVSTKWLLEITRSTVSSYYYKRGETTFK VTKGVPQGHPLSSNLAHMYLNDFEKENWKNIEYDPRMFYSRYEDDYVFLTTEKDLFEK MSKSLLNGENQHGLIANREKCKDSDEKQELYWCGVKIDLKSGEFSVKRRCSDGNFRWI PIKF" CDS complement(join(212039..212148,212476..212569, 212617..212733,212779..212904,212954..213688, 213735..213905,214551..214984,215642..215750)) /gene="Cbr-pqn-26" /locus_tag="CBG_12366" /standard_name="CBG12366" /product="Protein CBR-PQN-26" /note="C. briggsae CBR-PQN-26 protein ;" /note="Predicted" /db_xref="GOA:A8XF94" /db_xref="InterPro:IPR002109" /db_xref="InterPro:IPR036249" /db_xref="UniProtKB/TrEMBL:A8XF94" /protein_id="CAP31355.2" /translation="MPISPFYISNFSANLYGGAATQQQYQQQQHQYSQGYGEVPSTFQ TSFTYTQPETQSHHQQQPQATSSQNLQFHSYNSQPGVQYGSQDSFFPNQAALTAAATS FATSAAQQYAQTYAQQQQVQQQQVQQPPAQIDQANLAKYSQYLDILQKAYGIQLPGEL SMQPNAAAAGTGYQAAQSQQQIVNQVPQTYGQQPQQPAPQTYSGYPQTAVQPQPQVNT QSQAEITYQQQLAAYQQQQQQLAQQQQLAQQQAEQLAAQQRQAQELARHQQLQQQIQQ QQQQQQQQQQQNQYGGMQPNPYVQPSAPVQQPLPQQPIPQQPIPQQPVPQQQIPQQPM NFLPAPQAPMPQAPVPQQPQQPHQPQPQQYVTQPPTYKNNYQTAALGQTNSYSGQAKP QVYTYPGPSQVQKPTHSTVYGNHENSVIEEEPHGSVISQQQVVPPRPVQPAQPMSVAT VTRGPPPPTHPAPVVAPSSVVPKSQPRPPPTTRPPTRATIRPTPQTTQTKSATSRPSS ATSSAVTPSPSQSLTQQIRKLPAVLYIDSKNESTKKTETLLRDTYGLPLVTFYVDKTD KPAAIERQLQQLTAHKGLPYLFICGTFIGSESHIENYHSNGQIPQLVEYVCGDEKKKK KNKKTSS" CDS complement(join(221631..221996,222113..222280, 222325..222468,223180..223331,224479..224671, 224991..225089)) /gene="Cbr-mfb-1" /locus_tag="CBG_12367" /standard_name="CBG12367" /product="Protein CBR-MFB-1" /note="C. briggsae CBR-MFB-1 protein; contains similarity to Interpro domain IPR001969 (Peptidase aspartic, active site)" /note="Predicted" /db_xref="InterPro:IPR001810" /db_xref="InterPro:IPR036047" /db_xref="InterPro:IPR040394" /db_xref="UniProtKB/TrEMBL:A8XF95" /protein_id="CAP31356.2" /translation="MPFIGRDWRAPGETWVRTPHTNGWEQTKLRPVQISSEPILIPQV SSSPTLGSSSSPKFILDSGSSASSVPKFSLYDSEQNSSCGSLPGSVTESADDSDSAND KDWIPHCFVKSTSKEFIGCTSMSEAFHRLDLARAVNDVRRFNFICKVVQILVEEKLPN LSATARKSLLGILTAICFRSSNEDINVSTAKDLVKNFGNGLDNVNVCGSPQLVSRHHQ TASSLLDLISEKNIRTAADADDESSLTFFDLPREIVTLILRRLPDHQSLLETAQVHEA FQEIIDGEDKLWKSLCTFHFQEYQIIKQKTPGKSWRQAFFDLKKYHGCRELYADLIHI CCHCKALFWKSLGHPCVRETSAPSVRVTPRQFVDMLIYL" CDS join(233119..233256,233331..233413,233467..233591, 233643..233704,233752..234258,234305..234373, 234418..234553,234660..234851,234901..235569, 235619..235857,235906..236061,236108..236494) /gene="Cbr-sup-17" /locus_tag="CBG_12369" /standard_name="CBG12369" /product="Protein CBR-SUP-17" /note="C. briggsae CBR-SUP-17 protein; contains similarity to Pfam domains PF00200 (Disintegrin) , PF01562 (Reprolysin family propeptide) , PF01421 (Reprolysin (M12B) family zinc metalloprotease) contains similarity to Interpro domains IPR001762 (Blood coagulation inhibitor, Disintegrin), IPR001590 (Peptidase M12B, ADAM/reprolysin), IPR002870 (Peptidase M12B, propeptide)" /note="Predicted" /db_xref="GOA:A8XF96" /db_xref="InterPro:IPR001590" /db_xref="InterPro:IPR001762" /db_xref="InterPro:IPR002870" /db_xref="InterPro:IPR024079" /db_xref="InterPro:IPR034025" /db_xref="InterPro:IPR036436" /db_xref="UniProtKB/TrEMBL:A8XF96" /protein_id="CAP31357.2" /translation="MSRLRLQLHFTFIFCLLYENTNGLNSFIDSFETLNYRATHVANQ VAVSRRKRSIDSVASHYQEPIGFRFNAYNRTFHVQLHPIDDSLFHDDHVTDVDGGFAD VKPSHFLYEGYLKDDPNSHVHGSVFDGVFEGHIQTGEGSRYSIDKAAKYFERDDRPSQ YHSIIFRDDEINHRKWRVKRDAENLAEQMQGCGLSSRVRREMSSIQNSGENSDFFSNY MTMSGRSKRATRDSDGLYSVRTCSLYMQADHKLYEHIRMKEGNNDPIRTREEIVSLFY NHIKAVNEIYEGTNFNGIKGLHFVIQRTSIYTPESCDRGRAKTDSDNPFCEENVDVSN FLNLNSQRNHSAFCLAYALTFRDFVGGTLGLAWVASPQFNTAGGICQVHQRYNEGSRG WVYRSLNTGIVTLVNYGNRVPARVSQLTLAHEIGHNFGSPHDFPAECQPGLPDGNFIM FASATSGDKPNNGKFSPCSIKNISSVLAVVLKSMPVDPTRNANPVGYGKRNCFQERTS AFCGNQIYEPGEECDCGFSQADCDQMGDKCCVPHEARGTGGPGPCKRKPGAQCSPSQG YCCNPENCSLHNKNEEKICRQESECSNLQTCDGRSAQCPVSPPKHDGIPCQDSTKVCS AGQCNGSVCAMFGLEDCFLTEGKPDELCFLACIKDGKCTSSVHLPEFAANRTNFLQNM RKGKPGLILHPGSPCNNYKGYCDIFRKCRSVDANGPLARLKNLLFDKKTIETLTQWAQ DNWWAVGVGGIGFLVIMALFVKCCAVHTPSTNPNKPPALNIYQTLTRPGTLIRQHRQR HRAAAGSTPSGAVAGQSRSAGAPTSRTTPSARPSAPPLVAPQVPVAVPPPIGVAGPPI PLIAAIPPPGASSSSPAVIVLEPPPPYTAADPGSAMGGPKRGHRKNKRQAASDATPGN GKKKGK" CDS join(239308..239370,240125..240219,240271..240454, 240500..240598,240650..240953,241011..241117, 242179..242385,242435..242494) /gene="CBG12370" /locus_tag="CBG_12370" /standard_name="CBG12370" /product="Protein CBG12370" /note="contains similarity to Pfam domain PF02615 Malate/L-lactate dehydrogenase contains similarity to Interpro domain IPR003767 (Malate/L-lactate dehydrogenase)" /note="Predicted" /db_xref="GOA:A8XF97" /db_xref="InterPro:IPR003767" /db_xref="InterPro:IPR036111" /db_xref="UniProtKB/TrEMBL:A8XF97" /protein_id="CAP31358.1" /translation="MTIKEKREFNETDEIVISKEKLDCFVLECLAKVGCVGEHAQQLS ETLLCSDYRGHYSHGINRLHIYVHDLMMKSTAVTGTPQVIKSKGSTAWVDGNNLLGPV VGNFCMQLAVEKAKEFGIGWVVCRNSNHFGIAGWYAEYACRQGLVGMAFTNTSPCVFP TGSREKSLGSNPICMAAPGMDGDSFFLDMASTTVAYGKIEVADRKGETWIPSTWGADK HGDETHNPKEVLDGGGLQPLGGSEITGGYKGTGLCMMVEVLCGIMGGSAFGKNIRQWQ TTSKTADLGQCFIAIDPECFAPGFPLRLQEFCDETRNLTPINPNRPPQVPGDPERAHM NMCDDLGGIVYKKKQLDHLKNLADRLGVIMRLVEENGH" CDS complement(join(242659..242711,242757..242932, 243000..243100,243152..243230,243278..243436, 243480..243598,243648..243740,243783..244187, 244234..244381,244428..244600,244676..244753)) /gene="CBG12371" /locus_tag="CBG_12371" /standard_name="CBG12371" /product="Protein CBG12371" /note="contains similarity to Pfam domain PF01207 Dihydrouridine synthase (Dus) contains similarity to Interpro domains IPR001269 (tRNA-dihydrouridine synthase), IPR018517 (tRNA-dihydrouridine synthase, conserved site)" /note="Predicted" /db_xref="GOA:A8XF98" /db_xref="InterPro:IPR001269" /db_xref="InterPro:IPR013785" /db_xref="InterPro:IPR018517" /db_xref="InterPro:IPR035587" /db_xref="UniProtKB/TrEMBL:A8XF98" /protein_id="CAP31359.1" /translation="MNGDTTTEGYEVERCGESEAIDEESTVSPDAEDPLQIFRMPKKM KLADNVKNSDEIISKNQRFWRETLQNQKITKVLAPMVDQSELAFRLFTRKYGAQLTFT PMIHAHLFVNDGTYRRNALALVKADRPLVVQFCANKVDTFLAACRLVEDVCDGVDLNL GCPQMVAKRGRYGSWLQDEVDLICEMVSAVRDYCKIPVSCKIRVRDDRQETISYATRL VDAGATMLTVHGRTRDMKGAETGLADWTRIRDVVEAVGSRVPVMANGNIQFPGDVERC MEATGAVAVMSAEGLLYNPLIFDDANAHVETWKIAAEYLEYARDFHAGTSAIRAHVFR ICHHSLLEYEDLRMRVSLEHRVEDFENIVEELGKRARADAEAGKEREVEARKLFESIR NGQLMDAIEVSKQPHWISKPYFRLKEVAKESIVGEGEKTFREKQKEKLAQTAKEMGVS MKQARKRERRQLTGARILEAKKIKFPPCARCGQPAGQGCVHSKCKKCCRYQCKHEHLD CKAHRYLFANLPSESVIEV" CDS complement(join(245199..245262,245308..245464, 245514..245687,245734..245805,245855..246239, 246310..246620,246686..246923,247027..247173, 247222..247322,247354..247457,247504..247636, 247693..247807,247853..247897)) /gene="Cbr-cids-2" /locus_tag="CBG_12372" /standard_name="CBG12372" /product="Protein CBR-CIDS-2" /note="C. briggsae CBR-CIDS-2 protein; contains similarity to Pfam domain PF04818 RNA polymerase II-binding domain. contains similarity to Interpro domains IPR006569 (RNA polymerase II, large subunit, CTD), IPR006903 (Domain of unknown function DUF618)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XF99" /db_xref="InterPro:IPR006569" /db_xref="InterPro:IPR006903" /db_xref="InterPro:IPR008942" /db_xref="UniProtKB/TrEMBL:A8XF99" /protein_id="CAP31360.2" /translation="MVVLTADVVYNRLQDIKNPTQEAIETMSLWIMHYKDKASIDLIV DGWLNCFKTAGTDSKRIALFYVMNDVVQKAKIKHADTIIPAFQPAVLTAVATGRKQDK VKDVMKRCIQIFKTRGVFSSQSTTAMENLLAQLASDADEGYEAEDQALEVDSEDLLKR ISNFVSARNVISDMMKFVNEGDFDYKEKCKSGIKDREEGAHILQEVHEAIDTMVQVRH SMEDQKKKMMALSETLELAKRVFLHQKREVLVVEEAYINFRDGIKAVHSDLVEMEEKG VYPGVLSPQEEDNHLLYSNRQQGGWGDNRNQVDMEMDDDERPQAPMMKPHLQALVGIS SQPSLQSRIMQLGLQKIADGDEDMFHQQTMAAPSEESMNKASTTFQDRNLSAPSAPIN INQFSVPPPAIPSNVPDPRLRAGTEGPSQYALALQQHGLPPLAQHTEKKAPPHAVAPA YQPPFDQAQRDPRCKNTLLFFFQISIFIVPQHNQPPPTQLVQIPQPSAVGYQAQFEQR DPRISHQTGQQVYPHSFDAQKPPLKSPTVQTGPYQARFESSQISPQVMTQSQMNQYHQ QSLAGAYNRPPPPQPHLQQQQQQHQIHQQPQRGYTDYHSGGGDRREDRFNRRDDRGRN KYDDRRNHDYDDRRKSAPYPRGGGDRWKNGGGSYNDRGRNDRDWRGGSRGGGYDNRY" assembly_gap 248287..248977 /estimated_length=691 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(249040..249079,249256..249373, 249643..249775,250158..250336,250387..250541, 250602..250755,250815..250948,251002..251128, 251179..251238,251294..251626,251669..251798, 251817..251951,252000..252098,252139..252273)) /gene="Cbr-twk-30" /locus_tag="CBG_12373" /standard_name="CBG12373" /product="Protein CBR-TWK-30" /note="C. briggsae CBR-TWK-30 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain) (2), PF07885 (Ion channel) (2)contains similarity to Interpro domains IPR003280 (Two pore domain potassium channel), IPR003961 (Fibronectin, type III), IPR013099 (Ion transport 2)" /note="Predicted" /db_xref="GOA:A8XFA0" /db_xref="InterPro:IPR003280" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR013099" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR036116" /db_xref="UniProtKB/TrEMBL:A8XFA0" /protein_id="CAP31361.2" /translation="MSCFQVESNKMAKFLSLHVLLIGSVILYIILGAIVFQMLEGEHL DALKKDHMDRIDQNAKDYVNRLWDLAKENKNNYGTVDDLIKFVKSETVDDFNNYVDTV FYAHRAVRHGYDEVDPDIVIFDSPTWDFANSVFFTTTMLTSIGYGYVAPSTFGGRLFG VIYCLIGIPLTLVTVANVAKFLSETIFFLHYELWNKCLEWKRKRKGEVEADPAQPMFG DDENEEEILDRVRLVRFPPLTVFMFVFVYGCIAAWVVRYWETWTYVESLYFIFISILT VGFGDIRPSPGNIWVTLAFVVVGVILTTMCMDVVGRMYLKEIHYLGRKLKSNNPFYLL REAKARRRRAAMASLLAQLAKGMIFAHKDYNELARKKSKRKKEKRRGSHVLPNEKFMF ARLPPDPPSDCQVVSTSAYSVRLAWAPPFSPDPDLTYNIRYRLKHNEDAKVRELRGIK GNTVEIMSVDSCSLYEFRITAHNKFGESKAVYLVQYTEPQLSPQHILATRLNANTIEL TWEPPYKKSHEVKNYVVYFTENPNASLSEWEKIPVNGRRVVFPDLRFDWFYMFSATAV FKDGQRSPLSRALFIKTDKIEFHKHLALSRNGLKSKHYKLPHNFETYAESGIYFWRVC FTCKHKMCRRKSILRLRNM" CDS join(252867..253010,253103..253294) /gene="CBG12374" /locus_tag="CBG_12374" /standard_name="CBG12374" /product="Protein CBG12374" /note="contains similarity to Pfam domain PF05005 Janus/Ocnus family (Ocnus) contains similarity to Interpro domain IPR007702 (Janus/Ocnus)" /note="Predicted" /db_xref="GOA:A8XFA1" /db_xref="InterPro:IPR007702" /db_xref="InterPro:IPR038596" /db_xref="UniProtKB/TrEMBL:A8XFA1" /protein_id="CAP31362.2" /translation="MDRLNLKIIFEKSKLYFQVTDTASKEKKFIVRGYYRCTFHDDIL QETKSTAASGLKLKCVGGGRIKHDDSGKDILVYGYSQGYGRADHQIAVDILKQKYTDY HIDFSNDGY" CDS join(253851..253946,254313..254399,254593..254706) /gene="CBG12375" /locus_tag="CBG_12375" /standard_name="CBG12375" /product="Protein CBG12375" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFA2" /protein_id="CAP31363.2" /translation="MSLSLLTPRLVTKCTVARILVVRNASSKMTLDHEQSIKISDQQG FFKYQRDVSRDARYSNPIHVPQTRTRLRNLPTFRTSCYLVCSLRLHCLLLLRKD" CDS complement(join(254814..255034,255086..255089)) /gene="CBG25273" /locus_tag="CBG_25273" /standard_name="CBG25273" /product="Protein CBG25273" /note="Predicted" /db_xref="GOA:B6IIJ1" /db_xref="UniProtKB/TrEMBL:B6IIJ1" /protein_id="CAR99721.1" /translation="MHKKDVTIHLFIRENSIKRYYNARKKKAGTRNKIIYLVPLCLAA ATISSWRVSMISSLWWVTPDGSKTKVGFFQ" CDS complement(join(256143..256268,256318..256540, 256596..256702)) /gene="Cbr-rps-15" /locus_tag="CBG_12376" /standard_name="CBG12376" /product="Protein CBR-RPS-15" /note="C. briggsae CBR-RPS-15 protein; contains similarity to Pfam domain PF00203 Ribosomal protein S19 contains similarity to Interpro domains IPR005713 (Ribosomal protein S19A/S15e), IPR020934 (Ribosomal protein S19 conserved site), IPR002222 (Ribosomal protein S19/S15)" /note="Predicted" /db_xref="GOA:A8XFA3" /db_xref="InterPro:IPR002222" /db_xref="InterPro:IPR005713" /db_xref="InterPro:IPR020934" /db_xref="InterPro:IPR023575" /db_xref="UniProtKB/TrEMBL:A8XFA3" /protein_id="CAP31364.1" /translation="MATQDEAHLAELKKKRTFRKFTYRGVDLDQLLDMSREQFTKLLP CRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELVGGVIGI YNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSSRFIPLK" CDS join(257636..257913,258273..258377,258425..258636, 258688..258902,259139..259284,259333..259447, 259494..259856,260085..260201,260255..260350) /gene="CBG12377" /locus_tag="CBG_12377" /standard_name="CBG12377" /product="Protein CBG12377" /note="contains similarity to Pfam domain PF00657 GDSL-like Lipase/Acylhydrolase contains similarity to Interpro domain IPR001087 (Lipase, GDSL)" /note="Predicted" /db_xref="GOA:A8XFA4" /db_xref="InterPro:IPR035547" /db_xref="InterPro:IPR038885" /db_xref="UniProtKB/TrEMBL:A8XFA4" /protein_id="CAP31365.2" /translation="MRLNLLLCLFFYASGESINLSIDQKELRGEFHDETRSLVDYEDF STNLTDYASRRSSDDDKIVPEEQKKQREKAQKNDEVDESDDSSDISEERERDSVDHQH LKSLTAIKPEKHQPVAGVINSAFNDRKTFSCPRTKLELVTGRSVADISPEDITIIAAM GDALATGIGLWPNADIEFRGASFPIGGDSTIDGLITIPNILREFSPKIVGVSHGMGAD LPDHQLNVAQTGATTKDLYSQAVELTRRVKKLTEVDYMNEWIMIIITIGTEEICTKCD GPSYNHIKKAIIHLQIELPKALVVLLGPVHVSSFHEQKSNLLKNRCQCSRNQTEGFMY DISRKWSRVWKDLQKYVENGETTRPTFGMISYPMVTITSRYPSGLFIRDRPLLNRRGH NYATKWLWNRLIGGDLYNLSSATLSQDNYFCPSVVSRFFEENHSEDSFQGCPYFRTYA NHKKCETLTFDEAKDQELISHNGKTIKTGDHGRFEIVEEPQKKLEEAQKQEQKALLTR QNTRAQSENATSPTGIQLAPMSVGRHKSFLGTIDEKNSDV" assembly_gap 260614..261085 /estimated_length=472 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 261953..262578 /estimated_length=626 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(263479..263505,264074..264229)) /gene="CBG12378" /locus_tag="CBG_12378" /standard_name="CBG12378" /product="Protein CBG12378" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFA5" /protein_id="CAP31366.1" /translation="MARDPIRSYEDHWPFYFEARRGLPGFAEDRQGKRRWMLDAGRKM LPTARKLWMTSAISYR" CDS join(267973..268146,269654..270046,270093..270342, 270392..270705,270753..270827,270878..271033) /gene="CBG12379" /locus_tag="CBG_12379" /standard_name="CBG12379" /product="Protein CBG12379" /note="contains similarity to Pfam domains PF02958 (Ecdysteroid kinase) , PF07914 (Protein of unknown function (DUF1679)) contains similarity to Interpro domains IPR012877 (Uncharacterised kinase D1044.1), IPR004119 (Protein of unknown function DUF227), IPR015897 (CHK kinase-like)" /note="Predicted" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR012877" /db_xref="InterPro:IPR015897" /db_xref="UniProtKB/TrEMBL:A8XFA6" /protein_id="CAP31367.1" /translation="MKQLSILENGDGLFNTHVTLQDVQEVIQEQLNTKSILGKNTKYI LIGEGNVSAFSNSKGIMSRIILVEPDWTVDADHLPSKFVLKIPYCVHFQGLIRQMMGS NSMSKEQEAGLMMMLEAESHGVHNREVNMNTILEKWEKGETLLNSKIYFSKKFDSDNK SKGFIGMEYVENSVVRHLYVNVKPIELYPVLKSLAYFQAGTLQLNEEEKNSISGFDFA KMAGPALTADGIKGILQQARLINLEKLDEKVKKIEDFGHGVVNFELACNLNKYVGINQ PVLVHGDLWSTNILWKERNGKPIADKIIDYAVSRPRLVNIFETYIIHGIHMGNPAEDI VRLFVSTLSGADRQTHWKHLLNQFYIYFLEALQSEKAPYTLDQLKESYRCYFVTGGLA LLPLFGPVTQGKLMMCSENEDKEGYKRVITEKMERLLDDIEKYHLLSRNVTKSYKKPV ARN" CDS complement(join(271865..271938,271987..272323, 273197..273309,273359..273570,273620..273757, 273803..273909,273956..274132,274177..274456, 274503..274574,274622..274728,274778..274859, 274908..275309,275356..275476,275524..275633, 275684..275949,276000..276365,276398..276541, 276562..276717,276763..276894)) /gene="Cbr-hum-1" /locus_tag="CBG_12380" /standard_name="CBG12380" /product="Protein CBR-HUM-1" /note="C. briggsae CBR-HUM-1 protein; contains similarity to Pfam domains PF06017 (Myosin tail) , PF00018 (SH3 domain) , PF00063 (Myosin head (motor domain)) contains similarity to Interpro domains IPR010926 (Myosin tail 2), IPR001452 (Src homology-3 domain), IPR000169 (Peptidase, cysteine peptidase active site), IPR001609 (Myosin head, motor domain)" /note="Predicted" /db_xref="GOA:A8XFA7" /db_xref="InterPro:IPR001452" /db_xref="InterPro:IPR001609" /db_xref="InterPro:IPR010926" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR036028" /db_xref="InterPro:IPR036072" /db_xref="InterPro:IPR036961" /db_xref="UniProtKB/TrEMBL:A8XFA7" /protein_id="CAP31368.2" /translation="MAFHWQSKVNVQHVGVDDMVLLPKLTEQSIVENLKKRLQANSIF TYIGPVLISVNPFKQMPYFTEKEMLLYQGAAQYENAPHIYALADNMYRYRLIKSAFRN MLIDNESQCVIISGESGAGKTVNAKFIMNYISRISGGGQKVQVLQHVKDVILQSNPLL EAFGNSATVRNWNSSRFGKYVEIVFSRGGEPIGGKLSNFLLEKSRVVHQNEGDRNFHI FYQLCAGADKNLRSTLGIGELQYYNYLNMSGVFKADDTDDGKEFESTLHALKVVGVND QEQLEVLRIVSAVLHIGNISFTEENNFAAVSGKDCMRLDTNFNFFVTLKIPDLEFPAF LLGLTNADIESKLTGRKMESKWGTQKEEIDMKLNVDQANYTRDAWVKAIYARLFDYLV KKVNDALNITSQSSSDNFSIGILDIYGFEIFNNNGFEQFCINFVNEKLQQIFIELTLK AEQEEYVREGIKWTEIDYFDNKIVCDLIEVKRPPGIMSLLDDTCAQNHGQREGVDRQL LTTLSKSFAGHPHFGPGSDSFLIKHYAGDVTYNVDGFCDRNRDVLYPDLILLMQKSSN AFIRSLFPENVAASAGKRPTTFSTKIRTQANTLVESLMKCSPHYVRCIKPNETKRPND WEESRVKHQVEYLGLRENIRVRRAGFAYRRAFDKFAQRYAIVSPQTWPSFQGDQQRAC EIICDSVHMEKSQYQMGRTKIFVKNPESLFLLEETRERKFDGFARVIQKAWRQFAARK QHIKQKEQAADLMYGKKERRRYSLNRNFVGDYIGLEHHPTLQSLVGKRQRILFACTAN KYDRKFRATKLDMLLTANHLFLIGKEKVKSGPEKGKIVEIIKRQLDLPQIKSIGLSPY QDDFVIIYMNGEEYTSLLETPFKTEFCTALLKAYKERKNSPLHLDFRDTHVVSYKKMK FDFSDGKRTVQFGCDGSSSAEKTLKPNGKVLNVSIGTGLPNTTRPSTERPQGGYTPRR DQLRTSTRRTNKNTHGAQPMRAPVPAHAMNNNYNQPPPHAAAPTPVSTNHQYNQEPAR IPVMGNVISQLNNMNLAASGNSNPAAGRGPPPARGPKPAPPAKPKLNPVVIAVYPYEA QDTDELCFEAGDEIELMNKDASGWWQGKLNNRVGLFPGNYVKE" CDS complement(join(279423..279670,279924..280043, 280089..280226,280316..280682)) /gene="CBG12381" /locus_tag="CBG_12381" /standard_name="CBG12381" /product="Protein CBG12381" /note="contains similarity to Pfam domain PF02892 BED zinc finger contains similarity to Interpro domains IPR003656 (Zinc finger, BED-type predicted), IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:A8XFA8" /db_xref="InterPro:IPR003656" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR036236" /db_xref="UniProtKB/TrEMBL:A8XFA8" /protein_id="CAP31369.1" /translation="MSHINLYSLPTDQKNMIRCRFCVKVYKIDNGSSGFIRHLRCKHP DSLFQMGGSPTDNYSGKEQKLIHNDSFITEAPPTENNNDIDMELEGNNDVLSIMMQDM TTSQFIANFMNQAEFDGDEEINRVVDKRPRISQTSVSTSSTSNLLETNEEQELKLFDN PLHIFLNDINKLAEQNGEFSEANEESSSSASAVDISTSTKGSREPTPIYKSDNMESPQ VFNPLTPFGCVFCQASYHRIKDLTIHLNRVHSTRYRCNCCLAQFVQPQHLEHHYSTCH VIETLGKQEVMNNQ" CDS complement(join(283079..283251,283703..283858, 283913..283987,284156..284312)) /gene="CBG12382" /locus_tag="CBG_12382" /standard_name="CBG12382" /product="Protein CBG12382" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFA9" /protein_id="CAP31370.2" /translation="MSTEEETQADDESFGSITPEFIAHLNSELGTPFLRNRSTPNKSF LRRIGGKRTREDVTSRSRTEIINWVLESAELIKVCICPYCLKIHSRRDNTRVHIKKDH KGWEVREFIEGVDANLDHVRRVNEIGKFTVPPPPPPPPPQWECNIFPFVFMQISTKKF TEKKVFFKENSRKVIDGELKRILEKG" CDS complement(join(286411..286476,286522..286621, 286674..286954,287063..287200)) /gene="CBG12384" /locus_tag="CBG_12384" /standard_name="CBG12384" /product="Protein CBG12384" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFB0" /protein_id="CAP31371.2" /translation="MLLHRNRMVRSSKARRETSKARRENLFELLTKASDVIFLQWKSI VPHQRGFLADVSDMNGTVRSRNPSFNFNYISPVSTERSRRSAVSLKPLNNTIDFDADV SSILEVPPCSSRTRSHAIAGEDENHSIIVMNDDGMRTTRAYNMTIDLTASDEKPASLN LWNLKLRPGSNRKIDNKIRKEIQRQLARENPSDL" CDS complement(join(289100..289157,289255..289271)) /gene="CBG25274" /locus_tag="CBG_25274" /standard_name="CBG25274" /product="Protein CBG25274" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IIJ2" /protein_id="CAR99722.1" /translation="MFEDSKTPVITFVPYFLLINKLSN" CDS join(290114..290185,290253..290334,290382..290498, 290544..290646,290691..290812,290861..290949, 290996..291196) /gene="Cbr-fog-3" /locus_tag="CBG_12385" /standard_name="CBG12385" /product="Protein CBR-FOG-3" /note="C. briggsae CBR-FOG-3 protein; contains similarity to Interpro domains IPR015676 (Transducer of ErbB-2), IPR002087 (Anti-proliferative protein)" /note="Confirmed by transcript evidence" /db_xref="GOA:Q95WA6" /db_xref="InterPro:IPR002087" /db_xref="InterPro:IPR015676" /db_xref="InterPro:IPR036054" /db_xref="UniProtKB/TrEMBL:Q95WA6" /protein_id="CAP31372.1" /translation="MYTEVKELVNFVCRYMFGRVPRRATGIFAAELGNCLVAQFSSSW DIKNPRNGQMERMIFIKCGADGSSKCFEGCAAESGLRADEVLENMPTQLRIFANPGLL FYRATENGVDVPIWKGDVNTDSHYQPIPEHIVRIASRKADSCSNLGGAGKPVLLNKKF PIDDLAVLELVNNMYIPLALEKCDEINSNLSHIREKYPFLFTFKPTSAQTYSGIEFSQ TRFGSSKSRQDLQTMVGIKQLVNSNQNNSYSDQIIDTPIYSNY" CDS complement(291466..291591) /gene="CBG25275" /locus_tag="CBG_25275" /standard_name="CBG25275" /product="Protein CBG25275" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IIJ3" /protein_id="CAR99723.1" /translation="MKTTVTYFTDCHRVCCFFHQTSLKIKIVDSENLTEKVRVSQ" CDS complement(292515..292742) /gene="CBG25276" /locus_tag="CBG_25276" /standard_name="CBG25276" /product="Protein CBG25276" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IIJ4" /protein_id="CAR99724.1" /translation="MERVLEKRRKKKKKSILIISFFVCFCFLTHDHGLLLFSELTTTC PFTITFQLVPTRDDVIVLLKVFDLQCVYLVT" CDS join(294872..295006,299081..299222,299270..299354, 299408..299642,299686..300111,300456..300642, 300686..301209,301258..301480,303928..304421, 304468..304597,304643..304747,304798..304977, 305027..305111,305188..305366,305484..305543, 305595..305777,305823..306118,306167..306585, 306681..306766,306810..306926,306971..307117, 307494..307573,307616..307805,308229..308394, 308439..308547,308596..308707,308773..308887, 308931..309064,309112..309263,309466..309570, 309648..309761,309808..309921,309973..310080, 310124..310259,310308..310642,310686..310781, 310833..310982,311028..311136,311183..311257, 311307..311475,311524..311767,311813..312102, 312420..312556,312608..312778,312825..312950, 312993..313111,313165..313275,313322..313399, 313462..313638,313682..313789) /gene="CBG12386" /locus_tag="CBG_12386" /standard_name="CBG12386" /product="Protein CBG12386" /note="contains similarity to Pfam domains PF07645 (Calcium-binding EGF domain) , PF07699 (GCC2 and GCC3) (2), PF07974 (EGF-like domain) (3), PF02494 (HYR domain) contains similarity to Interpro domains IPR003410 (Hyalin), IPR000436 (Sushi/SCR/CCP), IPR018097 (EGF-like calcium-binding, conserved site), IPR000152 (EGF-type aspartate/asparagine hydroxylation site), IPR006210 (Epidermal growth factor-like), IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR011641 (Tyrosine-protein kinase ephrin type A/B receptor-like), IPR001881 (EGF-like calcium-binding), IPR018378 (C-type lectin, conserved site), IPR013032 (EGF-like region, conserved site), IPR013111 (EGF, extracellular)" /note="Predicted" /db_xref="GOA:A8XFB2" /db_xref="InterPro:IPR000152" /db_xref="InterPro:IPR000436" /db_xref="InterPro:IPR000742" /db_xref="InterPro:IPR001304" /db_xref="InterPro:IPR001881" /db_xref="InterPro:IPR002172" /db_xref="InterPro:IPR003410" /db_xref="InterPro:IPR009030" /db_xref="InterPro:IPR011641" /db_xref="InterPro:IPR013032" /db_xref="InterPro:IPR013320" /db_xref="InterPro:IPR016187" /db_xref="InterPro:IPR018097" /db_xref="InterPro:IPR035976" /db_xref="InterPro:IPR036055" /db_xref="UniProtKB/TrEMBL:A8XFB2" /protein_id="CAP31373.1" /translation="MSGKLEIISLEEFDEPFEEILKSEAEEAEKYADKWYGNSIDSWE TIRFPNDNIMTILRWFLQISSFLIILGYCTNPQYYDTEMYSDCFQQAPGWYHLTATCI FPLTQFERNYSTAAQMCGAVNHSIGYRETNWLIALQLLELFMKEKSRDLMKLYWTGLI VKNDEVIVVESADATDDTMNVADFTSMYNPLWAEGQPPEDLTSRQLAGSCIALDLRNS SNFGWRALPCSYQLPILCQNYACLPGTFRCADNSKCIPSSFQHDGFKDCLDGSDEFVD EVLPISSSTPNSILSSILRVNPIYEWPMIVSSGGVLSPTTLRYGKGECTHKWTVLSPN DHHFIIWIKWMSPVTSTTIAIEGKDQNGRIFLNSRNATSSITLTSSSFLLTASNTDTR KIEFQVHYQDADNSLCKLTERNQLFFNSELIPMSCNYHFSTQIPSSYVALLLRKCEGN APDVATIQFNNMTISLAPRKSKKLLIVPSNSLNIDVKSSWPDSNTKLDIQFLEIKAGN EEKEDVFLVDTNLEIEWIPRSSEICMSGQFRTLTVNMIMTSSEDFEGSESVRSTWDVK KFAKSCSEDNVQIVSKNQSAYLTNSSTFSGFGPTTVVIHQSAEPFEFHSIYSFQETRI EDSGRYFDENNSELESATSFVETTTNQIQSNGICKLPSVVYGYIMHVSDEMYPIGTIV FIKCNQGYLLSDSASILQCTENGTWEDDNKHTYPSEHPTVRCLPINCPSQTSVEIEKH LDPDTYETAYGVIRRYLHATNYNFPPFCVCGDSSTSLNSWKCYDDVEGGILNACILPQ TSDAMFLPAGRFVFRSGEPIYMNCMLCNTVIKHYTCEDGLWKTLEGYVEPYGSFECRC QDESGFQDPCMPYGSYVQHSGFYSCDCINGYKFYNGTCQDRNECEEESDFCDDHRYCQ NTAGGFTCDCPTNYHLYNASGEDVSHWSKISQWLIDGYSCVETTCVVKNDWEDKYDIK VIYPPDPSVYYKSGTAMDYLYATNICNSDGYKCVYQFQQSCIQDMWITQPNPTMACPV YNLIERNFSYPTDGRPKVFCNAQASWEILPACIYQSCSNITQFITWPLIIQRIDRPLG GRGFEITTVVNLACADGYRMPEGNGAVTCILRGTNYEWAPEIPKCISTSTTSSYTSSN TAPAATTLTPTAFTFFPFLSSSGTTQSSRDPSTESTWQPTGSEGSFIAYDDVVIEGSM KFEERSILDQQELWTHSGDWIWTPTGCIIHQWTFPVSFLVTSVPIQLTADQIELLIDV SQCNSSVQVGVTSSSDGFIPSISDFRPVMNTTSSGSFVVKLKNLKPNLAVSITANGYV KICGVTIRESVCDEVDYDGLHLKSSKPFSMRRHLSATCTNNQRLPAVNGYCDSRRGWV IQKTPCLCETKPICVTPAPIAQFDQVNKCSLNVCQNGECVNTGGGFDCICNAYFIRDI QPNGDPYCRPNHCELTSQTRNSGYDCDTGLDNDEIKCANVSGYSFYGDFCQYQGSASN NSFIYMVIRGSENAIATNICDSVDTEYAIPGVRCLVEPTTTPQPHEQSGCNVCVAGNC EYTPPPFDGGALCICGPGTYGRSCGVSKFCFNETNNHQYLCQNGGTCDLDRRICNCTS MFEGDHCEIAKDLDTCYGEKDCANGVCHNENGNMYCNCFDGYIPDFYGNCTILWDMCQ LNNPCQQGGKCIFNQTSGEQNCDCSSTGWLGTYCEIQPKVDDCSVCQNSKHCFNNFTL NVRCQCDLGFSGTHCLDTVNDCNFHPCFNGGKCETFNYIDVQRDLIESYNCTCPTGFS GTNCEIKENPDCSQLITCENGGTCSIVSPGSAVCNCTDQFFGTYCEQRCSDQCSHSYG CHESNGTIFCECYDGFSSPLCDQVDDVCKANVLLCQNSGTCNSTTSECDCPEFFSGTY CETNTDKCQTNSIICENNGSCVPQSGICECRPNFTGDRCENQIHSCRDITCFNGGTCL ESNGTCACIPGSTGDRCQDLGQPCIITMPNGSTSPYCLHNGNCTVTENGASCNCDGTD YTGRRCDIKANFNFNLVFNGLGYAPDIVSKPFFNVSIAQFTICSFVQYNHPAIESNGA QDGSIPTLLPWLIARGYGKSQKIVFDNKGFFICDPDDTCTRDEPSKRTNYRPTTISAN TWHHFCIVSPENLTSPSYTIYLDGVQLLPQLAPIFNPGPSGYLQLAPPDLTNKTYNRF VGMISMTQLYIIRLNETQIGQLAYDCYTTINETSSEIASNTLISWNGGFTRVSSSNPG VFIDPSGICSSVKCMFGRQANSNNYNSTGSCAKDRISPTVLRCPLNKYVTTSEDFIKV KWSDDEISFFDNIGVVRVEVNYHNGQQFGIGITAVRYIAFDAAGNSAECTFDVVVVQK ACPSESQIFVKGGTIRFGTTRMAPFTSKVAFVECNDKLYPVENRPKFYVCDIMGDFQY GGWLDDTQRKYYLPACGKTVPAEQAINGTVVGDGTCEHVYRKLYDIIWTSVNCDKIAS CHISIRPPCNKTSIGSMADVESGSYALQYTFSTKNATETISTTVLSQLQTNFTLVRQD STVDCDPSYPIHDTTGTITTCVSCAEGTFANVTQNQCMECPANTYRSSSNPDQLSCTQ CPDGTTTGEVTGAFDESQCYKICPIGQYESNGVCLRCPVGTFGPTEGLQRCICCGFDI STYGDESKTFDDCTKVCDPGQEMIRSADKIEPYCHVCDVGFYKEGSRGACIQCPRGLI TSSKGSKSINDCNVLNCIDANTRRNGNITAGPNTTYSQMCITCEQGTFQNQTNSDHCI PCTDLSEDAIDVPVTCQSTCSADIPTEGCNCQLQSSGNNSLIIRNCVPEVKPAHQNSN AIKIVLPIVFGVLLIIVLVVLFCFRKQ" CDS complement(join(314992..315266,315314..315411, 315468..315721)) /gene="CBG12388" /locus_tag="CBG_12388" /standard_name="CBG12388" /product="Protein CBG12388" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFB3" /protein_id="CAP31374.1" /translation="MHTSLLIFLSLVPLATSQMIRQCGCGEIQGCLGTATGGFMKCAD QCQNHVAAMGANYPALRQCMLAKEPAITRAANCQKSNLQNACSRSGGGMVRKRYPETL KLAAFTEVNSILQRSGIQAEAKAFLSVGKKFATCVMKCMDRGSTGHCYKKLGCGLDLP PDSVLVQSTKQCAINSGFDTAGVRQLCNCVAGTGVRNLAPLCNRITIS" CDS complement(join(318826..319014,319270..319551, 319599..319834,319881..320124,320175..320233, 320715..320821,320865..320974,321026..321070, 321126..321197,321241..321308,322688..322751)) /gene="Cbr-unc-29" /locus_tag="CBG_12389" /standard_name="CBG12389" /product="Protein CBR-UNC-29" /note="C. briggsae CBR-UNC-29 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR002394 (Nicotinic acetylcholine receptor), IPR018000 (Neurotransmitter-gated ion-channel, conserved site), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain)" /note="Predicted" /db_xref="GOA:A8XFB4" /db_xref="InterPro:IPR002394" /db_xref="InterPro:IPR006029" /db_xref="InterPro:IPR006201" /db_xref="InterPro:IPR006202" /db_xref="InterPro:IPR018000" /db_xref="InterPro:IPR036719" /db_xref="InterPro:IPR036734" /db_xref="UniProtKB/TrEMBL:A8XFB4" /protein_id="CAP31375.1" /translation="MRSSKWIFVTVGTAILLITRYGSASDDEERLMVDVFRGYNSLIQ PVRNSSELPLIVKMALQLVLLINVDEKDQVMHTNVWLTLQWHDFQMKWNPVNYGEIKQ IRVSPDKVWLPDIVLFNNADGNYEVSFMCNVVINHKGDMLWVPPAIYKSSCIIDVEFF PFDEQVCTLVFGSWTYNENEIKLEFVQAELVDVSEYSASSIWDVIDVPASLVNKRSRI EFQVRIRRKTLFYTVVLIIPTVLMAFLSMAVFFLPTDSGEKITLTISVLLSIVVFLLL VSKILPPTSSTIPLMAKYLLLTFVLNVITILVTVIIINVYFRGPRTHRMPHWVRVVFL QYLPKLVCMKRPKSASERSAVRSGMAQLPGVGQFTLSPSAHHPLCPSADDRTATIRNT TLNETSAYYPLSTDALRAIDAIEYITEHLKRDEQHKSFRDDWKYVAMIIDRLLLYVFF GITVGGTCGILFSAPHVFQRIDQQEMLDRLKEKYDTASNIP" CDS complement(join(324615..324749,324796..325115, 325642..326045,326089..326231,326446..326619, 326665..326948,326994..327109,327319..327464)) /gene="CBG12390" /locus_tag="CBG_12390" /standard_name="CBG12390" /product="Protein CBG12390" /note="contains similarity to Pfam domains PF12847 (Methyltransferase domain) , PF01170 (Putative RNA methylase family UPF0020) , PF09445 (RNA cap guanine-N2 methyltransferase) , PF02475 (Met-10+ like-protein) contains similarity to Interpro domains IPR019012 (RNA cap guanine-N2 methyltransferase), IPR000241 (Putative RNA methylase), IPR003402 (tRNA transferase Trm5/Tyw2)" /note="Predicted" /db_xref="GOA:A8XFB5" /db_xref="InterPro:IPR019012" /db_xref="InterPro:IPR029063" /db_xref="UniProtKB/TrEMBL:A8XFB5" /protein_id="CAP31376.1" /translation="MASSSESVCDDQGDYQWPWCQMGHFGINFIQTDGSKAYVEGDLS RAYIKDYELLRASKRPKDQKLAEEKIQEDLDEMSLKEVESEANGDTVDDKILDEKDMA YEVLPKWTSDKRKGRKKKMKGRYNYRSFNEYWDVAYFYLTQMTWLNDFGDQMNEENKE KLRKKCEEMKPVYPIEQHENLLENPDYHHVTKSMIEPKQGATYEEIYAEHCELIKKKS EVDYHAHQTKSVTRRCKDMISRVKRLGYAPGFEESQLPSFYDLKTEQKHDKPLIKEIR YTIDDAFSKKFCGADSRDEKVEDSSASTSDSTSPSDSQPEMPSPVNPSEIRFNFDPET EKYLIASDAEKLYANDPEISKYYYQRYRLFSRLDEGIIMDREGWFSVTPEAIAEHIAD RVVRHNVSVVVDAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVADYID FICADFFDVSATWAADKKLAPKVDAVFLSPPWGGPSYLKAKEFDLATGCCPNGVDIFD VSLKISPNIAYFLPRNTKVSQLTELAIKAKSRMEIEQSSLNSKIKTITVYYGKLAYRE KIPACDT" CDS complement(join(327895..328014,328062..328775, 328819..329298,329344..329519,329565..329634, 329680..330483,330531..330653,330707..330853, 330898..331005,331052..331135,331287..331367, 331599..332169,332215..332954,332969..333163, 333214..335301,335316..336268,336316..337031, 337078..338117,338205..338653,338713..338812)) /gene="CBG12391" /locus_tag="CBG_12391" /standard_name="CBG12391" /product="Protein CBG12391" /note="contains similarity to Pfam domains PF12624 (N-terminal region of Chorein, a TM vesicle-mediated sorter) , PF06650 (Protein of unknown function (DUF1162)) contains similarity to Interpro domain IPR009543 (Vacuolar protein sorting-associated protein)" /note="Predicted" /db_xref="GOA:A8XFB6" /db_xref="InterPro:IPR009543" /db_xref="InterPro:IPR026847" /db_xref="InterPro:IPR026854" /db_xref="InterPro:IPR031642" /db_xref="InterPro:IPR031645" /db_xref="InterPro:IPR031646" /db_xref="UniProtKB/TrEMBL:A8XFB6" /protein_id="CAP31377.2" /translation="MVFESLVADLLNRFLGDFVDNLDSSQLNIGIWGGDVKLDNLQVK ETALDDFDLPIKLKYGYLSSLVLKIPWKNLYNEPVIATVDGLNLIVVPNKGVVYNEKK AAKNIQEIKQKTLARLEEARKERRKPKDPQADTFTEKMITQIIKNLQVSRDEFLRFLQ VFFFRSQFQTFMFALKTDTPIVITTDENWKETIHKDVVKIIYKLVSLQNLAVYWNSST EFISDLDDKNIIQQKLQETIHNGKNQPEGFKYILEPIQMEAKLKLNQKPETDGSHWTI PKIDLAVDMHSLALAIGKFQYQDILLFLEAQERFNAAGQYLKYRPNINEFKGHYKQWW KFAYTAILEEKVRRRRNNWSWDRMHKHRQLVKKYQKAWVRRQTEASPGAEVETTVKEA EKKLDVFNVNVARQQAELEIDRLGLTRQEDKPQGWVAWGKSLFGSGGGGPIPDKNKKG GKDIGSQFQEAMTPEEKAKLFEAIDYQENIPPTNYPKEFVENKFEFKLGQVAIVVDGA VSMQLLKLQANVEQRPSAGAMHVESSIQELRMDGCGSEVIRVRDPTIPWMSFLLDTNP LKGDYDQLVKLAIAPINVKYQAPAINNAIDVFKPPESVRLNQLTALAMSRYEEVKTRS VTGLAHAVEHRSRLVLDVQIQPARIYVSEGGVYCEDKPSLLADMGLLSVVTVDTSTVN TSGMNKLSALMEKAYDRFHVKLSNVVIAFAENVSTAEACVFEKESPLHVLKPTGLDIQ IHKSSIDDLRLAKMRVLGDLPDIVIGISDVRLIGLMKLALSIPTPKPDEKTMAEKELE VVPEAKIRDRAKMRTIMEAEEMEEDVTQKNDGEDEDDQQKKKKTSEQQVQIELDLRLN QIGVIVYRKDTVFCDVSIMKMSCKLQMRTFDMVVTAELGSIRISMPEFSSLDPRRQHL FLIDNDENQGSLMTLKFVQANPESPFFATEYALTEQSVDFTFTKLVVSLHQEGVLELK GFGEALQSQLAELQKDKPEEEKLEETARKISRKLSDSVMSIASLSATSSTREKRQRKK TVSSLAAAELDASRNIKQHIKASFGSLALNIGTQKALETSLAIEHVSFGSRLFLFNIN ANVKITEKAMEVVATLRAISMKDRTTGAVYKKLLSVTGNEDMLRFDFIQYQRTDEDRA LMKSSDVDMVVKMRLAQMRFVFLNLWLARLMAWIAPFQNEAVRAAQAAQAAAAERAAA AAQNVKQIMEQSPPRIQLDVILEAPFIVVPRLSTSRDVIVLHLGRLALKNEIRGDSHH PKAVIDRMDIQMTDCSFGMGVMNDDVSAVSSSCMILKPISFKLALQRNLTFATVKQIP KIVVDAHLNSIEAELSDVDYKTLMQTLSGNLAEGADLAVPPPPPPPSLESSNTAVAPA TPGKEKEKKDREANAGPPLIEKSHTRIVFQFVLDKISAVLYEGEAVNGVRNESDAFAA LRLNNVKTSGKIGEDNSIVFAMSLDAFTMDDERKEKTKISKLMDKKGAKEDRFLGMSF NQDAEANKQIRLKMSAFFICLCPEFLGCLTRFFNVPQSEEQLEKEAVTSNVPTKAVSS STATSSGGVKPPAGPSQPVGTLAIDCDMHGVEVILVEDSMHPESTQALILSFNVTAAS HPNETTKDTKMNVAVENLTIFSSFYNPKRRNEVTYQVLTPVRIEALVNMNTETKTTDA VLKMSAMDVKMSPSIIRLLSAVSAEFAKSSGTVETGSVSQKLAKLRKWPNYFESKPID HRKYWFFAAPVAQEAVEAEEDATQEEKSRTDSMIGKENAKVDIERISFTLEAGTGAIP VPLIFLDMLINAEAQDWSSAMRVTSGISLQMSYYNESVSVWEPIIEPVENEKGEYERW KLAMNIRNYSTVTGFQMKSRNKQDSSDTSPQTEVKIEADKMLNVTVTKSLLTLLNKLS EVFATAAKQITPTQTRHLPGISPFVVLNETGIAVKVLDTETIRVSENGEVVDATHGDF VDVFLKNKKSNVEDRRLSIEQEEVTGDLKFELTGTVRETKIGRAEKRIIHLPKVSEGG HKWLIVAETTIENNRRLVTLNSHVKFTNHLSYPVELYSKRDTTLDLFGTVEHGETIPL AVPLLFSPSGDIYLKPVDDKYEVSFESLCWHNFEHNRRQAVRCEADSTDGSFSGIYID SVVHEEKIPDGVDDQTTSIYHVHLHPPLEFHNNLPFDITLELPEQKVLSAGTSSLLNV VAGSPVKAWLMYLGEKYVLEMPVPEIKKDVEVVALNTETGSDELVRHFENESLEQPNF LQLLGLHWTSEYGDQKVYLYAPFWLVNNTDKMLRHVESSGNMLTNTARGCVPCGKKSV ITSQENDDAVQHAPNENPIILPFPAVDLSKKKKARVRIERESEWSDEFPLDTVGNAAR ITCKGAHNDFDLTVDIKLCQSGLTKIVTFAPFYLVSNLGKNSMEIREEGQKNWIEIPA ETCVGVWPEERKKRKLMCVRYKEEPEAESLLFPITENYETLCHMDGDSIGVEVSVSTG ESSVAIHLSPFTPGMCPVQVMNNLSVPVSFGQKGHKKTSVGPNESLHFSWASITDAKI LEVDVGDWHFEDKLDQNRFGDLQIDKNVRRFSYYSNFLIGRQRVLLFTPDVDIAKAAY GSWETDIVDMQAEISLQGFGLSVVDNIVGREIIYMAISSSDILWEEEIKKGRFKPLAV KYMQALEEKYQAHLLTPNDEYESIEGFEVNVNRLILKKKKGKEVKIRRIFEQGLWASY GKSAQRTRLHAKINHIQVDNQLDACIFPRVLSVVPPPKSVVVDNTPKPFIELSLLQRQ PEFSSIAEIEYAHVLIQEFSVQVDQGLINALLLLAAGEVARKPYGKEMFDEDLKICHV TLSETASTYRSQRPKSFYNDLHISPIMMHLSFSQGGTSGDAAASGASMPIQSEMINVL LRSVGVTLTELQDVVFKLAYFERKCVFYSPEQLNGEIISHYAKQFIKQVYVLVLGLDI IGNPFGLVRDLSAGVEDLFYQPFQGAIQGPEEFAAGVALGVQSMFGHAVGGAAGAVGR ITGTVGKGVAALTFDDDYMKKRQEDLNRKPQSFGEGMARGLKGLGMGVVGGITGVVTK PIEGAKQEGGFGFVKGVGKGLIGVVTRPVSGVVDFASGTMNSVRAVAGTNREAGPLRP PRVLRADRIVRPYSSTDSYGFKVFKDTDRGEIAETDEFVTYASISDKIVLIITDRRLV LSKRTDMMGVWQTDWSTEYCKIKEPEFIPNGVKILLKEKKKGFLGIGSSEGKIITFQN AEKIHPKLAAAYKKATLA" CDS join(342706..342755,342867..342971,343374..343617, 343675..343773,343818..343919,343964..344167, 344212..344313,344358..344462,344510..344608, 344871..344975,345024..345250,345506..345603, 345657..345795,345847..345955) /gene="CBG12392" /locus_tag="CBG_12392" /standard_name="CBG12392" /product="Protein CBG12392" /note="Predicted" /db_xref="GOA:A8XFB7" /db_xref="InterPro:IPR033336" /db_xref="UniProtKB/TrEMBL:A8XFB7" /protein_id="CAP31378.2" /translation="MTDEVVEKCICQICQCGRHKCDHVDADLGFGNGIEENQTEYGMQ YPAKQAPRERLARSQNATFLSDGDFDGTTINRQDYGVKKVRGSQLNSRSITLILKVSR NAPFKFVNSGPADSGEFLADTTHKTDFQGKSVSRQNPLRPNTNGLQSGEFEGFTTHKS DFDYKGGSRTGVIRGPQDAQLFSGPFNSTTTNRADYDKKQAERSGILRGPTSTNMFKG QFDGQTTNKTDYDPKQTERPGIMRGATGGQLFTGPFNGQTTNKSDYDQKQAERQGILR GPTSTEMFSGPFNGVTTNKADYDQKQGERSEILRGPSGTEMFTGPFNGTATNKADYDR KQMADRQRPRALTSGRFSAGPFYDTTTNRAFFDKKQASRQMPFRAADDSKLTPSSPFL VLSTNRADYVGMQGDRSLPIRNTNDSSAISIAAPFDGVSTNHADFQRKQAEKSKLTRP HSSSNLLSSGASKFDSTTTTRADFIQKPHVRVINVKPKDDSFSGHVSRFDADTTYHDG FQEKSAEKLPLQRATDELTVGNGKFYGETTQHSDFIEKHVDICPAEKVLTRRDRSFEF KRTANGHRFYEQRVTHGTIQPNRLVPIEA" CDS join(350097..350180,350602..350793,350845..351030, 351079..351182,351626..351785,351834..351884) /gene="Cbr-tsp-15" /locus_tag="CBG_12393" /standard_name="CBG12393" /product="Protein CBR-TSP-15" /note="C. briggsae CBR-TSP-15 protein; contains similarity to Pfam domain PF00335 Tetraspanin family contains similarity to Interpro domain IPR018499 (Tetraspanin)" /note="Predicted" /db_xref="GOA:A8XFB8" /db_xref="InterPro:IPR008952" /db_xref="InterPro:IPR018499" /db_xref="UniProtKB/TrEMBL:A8XFB8" /protein_id="CAP31379.1" /translation="MGAFGNSAYGARGRLVKFSYIVTALISILFSISCICYGIWLLAR RSQYAELVSPSLYVDVGRILVIISILSIANYLICFYAIFKEMRCIVTSCAVASIVIAV MLIIGGLIGLNFRDQLTHYTPLNLKMLTSLRELYGTHDMKGITESWDALQSNFKCCGV NGTDDAQIWKTSKWYMHQKAPKSLIPESCCIPSEIDRCRSNPFDSGSPAPYYTNTCYE PLQNDLLHVMNVASWLCITNAIVQIIPSVASCWYSKLIRK" CDS complement(join(352388..352457,352659..352713, 352766..352990,353034..353355,353370..354128, 354178..354315,354345..354646,354858..354988, 355499..355579,363173..363372,363419..363557, 364260..364461,364503..364614,367526..367642, 367690..367851,367902..368015)) /gene="Cbr-madd-4" /locus_tag="CBG_12394" /standard_name="CBG12394" /product="Protein CBR-MADD-4" /note="C. briggsae CBR-MADD-4 protein; contains similarity to Pfam domains PF07679 (Immunoglobulin I-set domain) , PF00090 (Thrombospondin type 1 domain) (3)contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR000884 (Thrombospondin, type 1 repeat), IPR013098 (Immunoglobulin I-set), IPR013273 (Peptidase M12B, ADAM-TS), IPR003599 (Immunoglobulin subtype)" /note="Predicted" /db_xref="GOA:A8XFB9" /db_xref="InterPro:IPR000884" /db_xref="InterPro:IPR003598" /db_xref="InterPro:IPR003599" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR010909" /db_xref="InterPro:IPR013098" /db_xref="InterPro:IPR013273" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR036179" /db_xref="InterPro:IPR036383" /db_xref="UniProtKB/TrEMBL:A8XFB9" /protein_id="CAP31380.2" /translation="MKCFHIVVFLIFHLLLAQLHVEALSWAAWSPWSSCTKTCGGGVS RQLRRCLTSKCSGESVRFKVCAQKTCESKSRLARDTICGGEEMVSRQQCEVVCRSRVT GANFLWRVDDGTPCQAATSRAVCSKGACQIVGCDGLIGSSFRFDACGVCGGRGDTCDN GKFVWKVSEEYTACASNCDDIVDWAGAGRSIASTSQPIVVCVNAVSGRVVPERLCADK LRPKVEARPCPMLICPSRWMAADWTECVPHCGSGTKRREVYCVQTAHNITVHVPDSFC ENGTRPVAEENCVSTSCGRWEAGKWSKCTASCGQGVRRRHVACVGGSDCDEGGRPRQE TTCYSGIPCGLAANSLDWNDRAYLDGNTFGSMDNHNDWQAPRLVAGEWSTCSSTCGTG VMSRTVECVAVNPISSAPIKLPMSECQDQEQPKLFESCEVRSCPLQEDSKLTEDEAPY QWRYGDWTQCSASCLGGKQKAALKCIQVSTGKSVQWSQCDARRRPPEKSRPCNQHPCP PFWLTSSYSECSKCEMCQTVSKTDGADAHIILRDDRCHFKKPQETETCNVVACPPTWV TAQWTECSRSCDSGERRRQVWCEIKDSRGKTQRRPDIECDANTKPQSVEVCSFGSCSR PELLTNRVFEQNVEQKKLTLGIGGVATLYQGTSIKIKCPAKKFDKKKIYWKKNGKKIK NDAHIKVSANGNLRVFHARMEDAGVYECFTDRLQGNVTLNFKYRDFPATRTDLPQKVQ LPTNENQQRPPMSREDQIREQASVLHKMNVSLIEGLLTAPNDEKAREQLKKYGNELVA RWDIGHWSECRQKTCHVAGYQLANTNINFQARGLSCKVTFHGETRNVDNSICESLASV RPPETRPCHRENCPRWEASKWSECSSQRCVSSMLAQKRRNVTCRFTNGTSIDIQHCDI TNRPSTTMDCPNQNCKAEWRTSDWGSCSSECGTGGVQLRLLSCVWISSGRPAGRNCEQ MRRPHSARACVADEPLPPCMPTASSLFQRDSSCQDQSRFCDIIKLFHSCDSLEVRQKC CSTCTFVERKKF" assembly_gap 357521..357530 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(370635..370757) /gene="CBG25277" /locus_tag="CBG_25277" /standard_name="CBG25277" /product="Protein CBG25277" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IIJ5" /protein_id="CAR99725.1" /translation="MPTTLVCEITTEKQEFLSFCADNPFTSCTHKTNLRCPSIF" CDS complement(join(371569..371762,371810..371864)) /gene="Cbr-fip-6" /locus_tag="CBG_12395" /standard_name="CBG12395" /product="Protein CBR-FIP-6" /note="C. briggsae CBR-FIP-6 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFC0" /protein_id="CAP31381.1" /translation="MLNQQRFYVLLLVLLLAVVTYAHSYSHSYSHSHEHHHHHHHGGY YGGGGYGYQPYGYGYRNNGYGNNGYNGYYQQNYWGRKK" CDS complement(join(372375..372514,372572..372614)) /gene="CBG25278" /locus_tag="CBG_25278" /standard_name="CBG25278" /product="Protein CBG25278" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IIJ6" /protein_id="CAR99726.1" /translation="MNFGFLIVLMMAVVGALGGWSHSFSHSHEFHGHHHGGLLGGGGF NPYGGYYQSSYWGRKK" CDS complement(join(372878..372964,373009..373800, 373851..373934)) /gene="CBG12397" /locus_tag="CBG_12397" /standard_name="CBG12397" /product="Protein CBG12397" /note="contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domain IPR000535 (Major sperm protein)" /note="Predicted" /db_xref="GOA:A8XFC1" /db_xref="InterPro:IPR000535" /db_xref="InterPro:IPR008962" /db_xref="InterPro:IPR013783" /db_xref="UniProtKB/TrEMBL:A8XFC1" /protein_id="CAP31382.1" /translation="MLVPLTAIVTTSLPMAAAIALCAKDRKTTHVKNKGKSAKSTRSS KSAHGKSSKSGKSSRSHRSKSQRSKRSSKSGKKGKSSKSGKGGKSGKSKKSGKSSKSK KQVKEGATTSASAASAGSAASEKSTKSSKSSRKSSKSSKSRKARRLDSDAQYKMEKSG KSSKNSAACAAAPKPVSKVMNCSFPIVVCKQSTGGKQMEKSLVEEVNAIKHSNQLSVF PAKLQYQTLGGVSQIELKNTSGERKAYKLKCSDNALYRVNPVFGFAEPHSTAKIDVLR LNGEQKTDKLVFLTTNAKDAADPHEAFAKQTEQREMMVVPLVAA" CDS join(374188..374245,374292..374405,374453..374754, 374810..374890,374946..375079,375120..375255, 375303..375428) /gene="CBG12398" /locus_tag="CBG_12398" /standard_name="CBG12398" /product="Protein CBG12398" /note="contains similarity to Pfam domain PF00300 Histidine phosphatase superfamily (branch 1) contains similarity to Interpro domain IPR013078 (Histidine phosphatase superfamily, clade-1)" /note="Predicted" /db_xref="InterPro:IPR013078" /db_xref="InterPro:IPR029033" /db_xref="UniProtKB/TrEMBL:A8XFC2" /protein_id="CAP31383.2" /translation="MSVAPLKLPAENGKRRDSTSSIGASTYTGQENPRSEEKFLTVLS QVEQPSRELTIVTMSHAESMGLIFPNWVRICYRRGPMEYQPYDMNMPPKLIPRQPLHY KFDSPLTERGQIVAETYGRGLTSIGVRPYEIFCSPDMKSVQTAAALVKGLGLSFSAIN IEPALMGYRQMLPPNYHEMILSPKTYFGMGYPINNQYEPIQGFFPSENIEDYNLRIRS FYKEKIAKIEQKYVVVVADNVVVDMTQNIRFETVDDILRSTKKPTCQMSFISLKQGDA HILDSPVLPLTKSLYVVKPFYWSEVPLKLAVPNHPELNQN" CDS complement(join(375672..375868,376518..376697, 376721..377258,377303..377399,377457..377544, 377592..377731,377786..378053,378101..378310, 378675..378681)) /gene="CBG12399" /locus_tag="CBG_12399" /standard_name="CBG12399" /product="Protein CBG12399" /note="contains similarity to Pfam domain PF00100 Zona pellucida-like domain contains similarity to Interpro domain IPR001507 (Zona pellucida sperm-binding protein)" /note="Predicted" /db_xref="GOA:A8XFC3" /db_xref="InterPro:IPR001507" /db_xref="UniProtKB/TrEMBL:A8XFC3" /protein_id="CAP31384.2" /translation="MWSRITSMLYLKRFSFLSIHLFKFQFILFLCVSCISTVSSSFEI QNGVVGKPEVFCGIDTIRVKINTEHPFNGRIYVDGESDKQHCVQHSADSHSSPQEFSI PIGACNMRRQRTLHPRGISFSFTMITSFHPFFVTGMDRAFSIRCFFLESIKGLNAEID VGTLAPQNVDQEYSLPVCAYHLKDGIEGHVLRFAQVGQKVTHVWRCDQDASHVYGILI HSCFADDGHGNKFELVDDRGCSTDPFLLPQIEYESGAISAYTNAQVFKYADKVQLYFT CTVQLCYKHDGGCEGITPPSCSGHSIHPPRISGSSPEHNFVNLGPDNHGPDVHHGGNS LNSESQFHESESTPRVPGYIKPDAFQPIILGPPHPTVFHKDGPSGPSLHHISSFKGPK DIQRLNEEEDTPNPYRRDSPLNDTTEDDIVMQVVTLRSTVPTVSHTPDLVTFKPVVTA NEDEDEEEELITPRVFGRGSTSPTTTKVRRTAGEMETDVSVDVIVLPVEDKERKGFIF FNTNSPPQSLSFKSASEVCLSKTASVIFGTAVLLALFCCVTVTFLVTRKRNHQLLHHA SKRRIDNF" CDS complement(join(379175..379379,379427..379551, 379598..379765,379812..380001,380416..380513, 380791..381000,381060..381161)) /gene="CBG12400" /locus_tag="CBG_12400" /standard_name="CBG12400" /product="Protein CBG12400" /note="contains similarity to Pfam domains PF05637 (galactosyl transferase GMA12/MNN10 family) , PF03314 (Protein of unknown function, DUF273) contains similarity to Interpro domains IPR004988 (Protein of unknown function DUF273), IPR008630 (Galactosyl transferase)" /note="Predicted" /db_xref="GOA:A8XFC4" /db_xref="InterPro:IPR004988" /db_xref="InterPro:IPR029044" /db_xref="UniProtKB/TrEMBL:A8XFC4" /protein_id="CAP31385.1" /translation="MRKVHYRIRHCFIFFGLLIIICFVSRLFIRDIQNDSNTSKFPLS RASSSRRLNISVVIVVSDIEDAEIEYSTALRSIRCYCQIHNYPLHFIQDSDYRDVCQQ KDFMFRRHCIVAQLLENIEWLVFLDADIAVVNPKVLLEEYIDESYDLTFYDRFVNWEV AAGSYIVHNTQWAKSFLRNFADFESQLPNSFHGTDNGALHIYLQQTFYPQLSAESQVC RKIWEKAENYQDLFTFEACIRTVMGDVHEFDKARILKKGTGWVRDIWLTDSKWNPERD FMLHGLKDSNEIVLKQGFIINKIFGNFNWRSPFSSKLNSENCAPFEFVEWEMNKSLMV SRKEVEKYLKSQFDEVERRRWDSLSAVAGYI" CDS join(382469..382924,382970..383278) /gene="CBG12401" /locus_tag="CBG_12401" /standard_name="CBG12401" /product="Protein CBG12401" /note="contains similarity to Pfam domain PF06966 Protein of unknown function (DUF1295) contains similarity to Interpro domains IPR016636 (3-oxo-5-alpha-steroid 4-dehydrogenase), IPR010721 (Protein of unknown function DUF1295)" /note="Predicted" /db_xref="GOA:A8XFC5" /db_xref="InterPro:IPR001104" /db_xref="InterPro:IPR016636" /db_xref="InterPro:IPR039357" /db_xref="UniProtKB/TrEMBL:A8XFC5" /protein_id="CAP31386.1" /translation="MLYAVIVIGSWLMTTCGIFVFLTLSNTGKPAEYGRYSNPSPSKS MIPAKLAWMTQESPAFFIPFYFYWTDQHLTEYGKFLTCVFLFYYAYRTFAYPLLIRSK NETPFEIVLMKFLFCIFNGFIQGSWNAYYQPEIDKFHPRFFVFFGIWLFVIGFIIHCI SDLHLISFRYNLPNDTYSIPRGHLFEYISCPNYFGECLQWIGYAISTRSFPAIAFAFF VVCNIAPRAASHHECYKKKFGAQYPNDRMALLPGLW" CDS join(383627..383701,383752..384360,384408..384634, 384710..384899,384960..385244,385292..385507, 385552..385706,385762..385831,385878..386102, 386145..386465,386518..386724,386775..386864, 386912..387004) /gene="Cbr-gei-11" /locus_tag="CBG_12402" /standard_name="CBG12402" /product="Protein CBR-GEI-11" /note="C. briggsae CBR-GEI-11 protein; contains similarity to Pfam domain PF00249 Myb-like DNA-binding domain contains similarity to Interpro domains IPR001005 (SANT domain, DNA binding), IPR014778 (Myb, DNA-binding), IPR015495 (Myb transcription factor)" /note="Predicted" /db_xref="GOA:A8XFC6" /db_xref="InterPro:IPR001005" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017877" /db_xref="InterPro:IPR017930" /db_xref="UniProtKB/TrEMBL:A8XFC6" /protein_id="CAP31387.2" /translation="MSWEPRDDSGPSPSNAGVTQSSLYEIEDDGLTRGQQIDCSNLED LLVYNETYSEIIDSSLALVEQQLIDNQMRQSQLKEEHRKYNRADITKRKVPVHLYMPP YFKDENGMCPPMSAEAREKQELKWFDPLMKEEKKWTPSEIRTLRTAVKESMVAHEVQP LCSRRDIIVSKLKNADITTTNKERRQWTMELEDVMRNIGYVKGKPEEEVLTASADYSV IPWNAVANVDFKGTRTEWAVRAKWCNELNPKWNRGPWPTEEVEKLKFLRESPKFVSWQ MLALNLGTNRTSYQCMEKYKTDVSQHSKEWTQDEDTKLIALTKLTSINGHIQWDKVAQ FMPGRTRQQVRTRFSHSLDSSVKHGRWSDQEDVLLISAISRYGAKDWAKVAQAVRNRN DSQCRERWMNVLNRSAHVNERFTLMEDDKLLYAIKIFGKGNWAKCQSILPRKTPKQLR RRYLQLIAAKLRLASGICNAIDAMKSGRRAPGEDELDQEDKEEAEKIPNAIMKEIYEK LAKDNPDVGETPEEFFKRSMSSKLRYAAARIRVLKSTPGYKAVENHINEIVKKHQNVD EIDKELKSSEILSSLRLSEVDIRYMLEKSKSMDRYYRARQFKKNVDQIGCRVRPVNIK IDPETLITYNPEDSESEKRMILVEGLCTVVRQHDHVEWGKKFWTEHRFEASRKAKNFA EKMVLDKSVEVADWAHRIGSKMFDSADIHCPAKTTLPPTTASVDMMRMVQKARAGLNR LAAEHFYPVDVSLEQQPTFTNEDREKLDESRRMNITLSEEVTNSTEYSLFYARMRTIL LEPMRLQIARESVTDETKRLALCLSEDRAHEEESVAVNKKNRPQMPSNSVSVTPTSVA RVLNTGMNIDTTGILAASDKNSSAKIQAKRNIRNTVDEVARRLSMRATPAKSHVSINS TDSGLD" CDS join(387299..387383,387427..387591,387642..387898) /gene="Cbr-mdt-31" /locus_tag="CBG_12403" /standard_name="CBG12403" /product="Protein CBR-MDT-31" /note="C. briggsae CBR-MDT-31 protein; contains similarity to Pfam domain PF05669 SOH1 contains similarity to Interpro domain IPR008831 (Mediator complex, subunit Med31)" /note="Predicted" /db_xref="GOA:Q61DP3" /db_xref="InterPro:IPR008831" /db_xref="InterPro:IPR038089" /db_xref="UniProtKB/Swiss-Prot:Q61DP3" /protein_id="CAP31388.2" /translation="METPESEKTRFEVECEFVQALANPNYLNFLAQRGYFKEEYFVNY LKYLLYWKNPQYARCLKFPQCLHMLEALQSQQFRDAMAYGPSAKFVEDQVVLQWQFYL RKRHRLCMLPEGEDQDVEESEEETVENEQKESEDEEDVVIVEKPEDEQEEQAEEAAEP TDTSLLNT" CDS complement(join(388105..388432,388485..388790, 388839..388984,389030..389720,389768..390062, 390115..390498,390570..390818,390864..390954)) /gene="Cbr-spd-2" /locus_tag="CBG_12404" /standard_name="CBG12404" /product="Protein CBR-SPD-2" /note="C. briggsae CBR-SPD-2 protein ;" /note="Partially confirmed by transcript evidence" /db_xref="GOA:Q61DP2" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR031549" /db_xref="InterPro:IPR039103" /db_xref="UniProtKB/Swiss-Prot:Q61DP2" /protein_id="CAP31389.1" /translation="MNEDAPMDLVDDRFADQSIQDEPVDDGESFYNEDVYVDCEEDED DDVVPTSENFRLENRYKPSLHTPRELPTIREENREDVRSNTSSRVNTRPPSVLSDKSN DISNMFGFQDGGRAIDQYTDQFYSEGNRAERLFPEAGFLQNSPVRDKQNSWEPSVCHY EKQPTPEVKNNSPGLVFANMSSKKDVTRKQENVRPGKMMPEKVNDENEPKSRRFSPER NTFTTSPMNSTKYLEEKTSTPKRPGGTNRLGTRGLPSFECSTIYDISPQRTSGTPKTY ESRHPTNAYTPNSATTSDTVLSNRTIGDNTVQNVLKGVDINLLTALENARKKRDRPQV KPDFRLNSLPRGKLSSTQRPKSDDHSSMTSIVSSSTQNNTGYRKIQEQRNSATSTDLT NSNTSNFTNNTSRVSTAKNDFSRSSRQRNGFSDSSVSTIIPNMNSMTTRDRDGRDSVS SVRTISRASSTMTVGGGNGHMTSGAPKPLRFHVSRLGFGYVPIGETLTMQLEVENTTD RPCKVNARLDSKITCFKVLDNATTMIDPKKAIKVRVAFTPTSLGRYSLYLKAEVAEQN FTQKIPVWGWGGVSKIAPISARNLQPTSNSSEFAMFVSDMKRIAFKLGNSGDRSGFAL LTVYDSAMRQVPNSYVRFNPSNGIVIGKNYEKLIEIRIDPSYHDHYGELTNNRTSSAM STVSTASSMASLRRRVIAGSDFFVQVAWGVEGIRERLRMLEMKHKRRQMIDGLDFTSH PFTDEKCVVYPPPDAYPTISDEDHDLFAASYSNFYINIFSSPDGLNAFRAATVSADKF DNDATVLETSAFRHQTFVNDVTMVPRHTKLM" assembly_gap 391417..393293 /estimated_length=1877 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(393318..393402,393450..393556,393604..393852) /gene="Cbr-thoc-3.1" /locus_tag="CBG_12405" /standard_name="CBG12405" /product="Protein CBR-THOC-3.1" /note="C. briggsae CBR-THOC-3.1 protein ;" /note="Predicted" /db_xref="GOA:A8XFC9" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR036322" /db_xref="InterPro:IPR040132" /db_xref="UniProtKB/TrEMBL:A8XFC9" /protein_id="CAP31390.2" /translation="MFASASSDRNVCIWDARQSKPTHRITNKVGNFFVSWSPCDEYLI FLDKDNRVNTVDVRNYKVVNTHDMKVFSHEVIFHPLSNHVFVAESGGRVEVLKFVGGA LEPATVIQHIHIKLTAWLFRFPKTDKNLLLEHPMHRVQYGTLMN" CDS complement(join(394362..394405,395309..395423, 395471..395563,395622..395762,395807..396063, 396111..396225,396257..396357,396456..396531)) /gene="CBG25279" /locus_tag="CBG_25279" /standard_name="CBG25279" /product="Protein CBG25279" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IIJ7" /protein_id="CAR99727.1" /translation="MRMGRQTMRRADHVEYTDYEDEKEKAAPIRQQRSVHPQQPHRWA RSPTTSTSTRVASFIVSIMFKSDVPMFFQIKLHFIAMKLITSLFRIDETAPMLNNLLN CINESVIDIGKCGLVILKYKQSGRFDEKIYNVLKMQPSVRHNNNFQESAKSLSAFELH TLSDGTCLGNLSSQVFHYGQIFYMKILQLRQNRSATRSTAVKTPKAPASLSASPNFVH VTRVFTGTYPFKIQEVVSTQEIGSIPADPRRAISLLIKHVLSQIFDGEKVHQKFAIRS HHGRNKKNDDLQDLPRDVLCFIKEQFGLSPVNFEHVF" CDS complement(join(397792..397849,397896..398028, 398077..398095)) /gene="CBG25280" /locus_tag="CBG_25280" /standard_name="CBG25280" /product="Protein CBG25280" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IIJ8" /protein_id="CAR99728.1" /translation="MVEDIMESFIYSSFHSDIHLFCFQHCLYKSRQIRWKTNLSRKLL QLDFLQKQTKRAMWIDYCQIRVPLE" CDS join(398727..398762,398809..398979,399028..399153, 399200..399337,399386..399631,399676..399849, 399893..399983,400047..400120,400356..400589, 400634..400747) /gene="CBG12407" /locus_tag="CBG_12407" /standard_name="CBG12407" /product="Protein CBG12407" /note="contains similarity to Pfam domain PF00514 Armadillo/beta-catenin-like repeat contains similarity to Interpro domain IPR000225 (Armadillo)" /note="Predicted" /db_xref="GOA:A8XFD0" /db_xref="InterPro:IPR000225" /db_xref="InterPro:IPR011989" /db_xref="InterPro:IPR016024" /db_xref="UniProtKB/TrEMBL:A8XFD0" /protein_id="CAP31391.2" /translation="MVKSSKKVKNEATQNPDTKINFDSSMFVAMLESSCRIQLSTALH FFRKTFASGQDTSSVMIKEQYYSRIKNGVLNALRSHILDIDGEVNAVWIITNMCCINQ EVTHLFVQSNVIDTLTQLVRSANHRLLNQTIWALANIAADCPSCKMMCRKPKLLKALS KLLQTPQLLDETEYRHLIWCINNILSGGRATMTSPVARSLIRGFSNILLDTEKVQKMK CGPMILWTMANLVDSTHDTTRIDMLLSQPLLIEHVLMLFLDENEKPCHTAALRLLGNI VVGNDAQTDQLLEYPHFRTVMNIAMSCAEFNSEAAWIVSNIVAGSPRHVDFVLEKPEH FYSWLLAGINSKEERMRKESLWIVGNLLATADQFQRTLLVTLGVTHHLPALLEWNDIR LREKAATTAAELLRENTWQYKLYQDLNIIECIEAAGQRFSTQKAELQMLMNDLEPPKR PKNEDPDCRVICYSSLP" CDS complement(join(401315..401410,401458..401578, 401626..401888,401943..402981,403039..406435, 406482..406653,406704..408081,408128..408635, 408682..409164,409731..410056,410107..410189, 410317..410491,411183..411202,411505..411639)) /gene="Cbr-fasn-1" /locus_tag="CBG_12408" /standard_name="CBG12408" /product="Protein CBR-FASN-1" /note="C. briggsae CBR-FASN-1 protein; contains similarity to Pfam domains PF02801 (Beta-ketoacyl synthase, C-terminal domain) , PF08659 (KR domain) , PF00106 (short chain dehydrogenase) , PF00109 (Beta-ketoacyl synthase, N-terminal domain) (2), PF00550 (Phosphopantetheine attachment site) , PF00975 (Thioesterase domain) , PF00107 (Zinc-binding dehydrogenase) , PF00698 (Acyl transferase domain) contains similarity to Interpro domains IPR006163 (Phosphopantetheine-binding), IPR013149 (Alcohol dehydrogenase, C-terminal), IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain), IPR020843 (Polyketide synthase, enoylreductase), IPR013968 (Polyketide synthase, KR), IPR000794 (Beta-ketoacyl synthase), IPR014031 (Beta-ketoacyl synthase, C-terminal), IPR003006 (Immunoglobulin/major histocompatibility complex, conserved site), IPR014043 (Acyl transferase), IPR014030 (Beta-ketoacyl synthase, N-terminal), IPR020801 (Polyketide synthase, acyl transferase domain), IPR018201 (Beta-ketoacyl synthase, active site), IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR020806 (Polyketide synthase, phosphopantetheine-binding), IPR001031 (Thioesterase), IPR020842 (Polyketide synthase/Fatty acid synthase, KR)" /note="Predicted" /db_xref="GOA:A8XFD1" /db_xref="InterPro:IPR001031" /db_xref="InterPro:IPR001227" /db_xref="InterPro:IPR009081" /db_xref="InterPro:IPR011032" /db_xref="InterPro:IPR013149" /db_xref="InterPro:IPR013968" /db_xref="InterPro:IPR014030" /db_xref="InterPro:IPR014031" /db_xref="InterPro:IPR014043" /db_xref="InterPro:IPR016035" /db_xref="InterPro:IPR016036" /db_xref="InterPro:IPR016039" /db_xref="InterPro:IPR018201" /db_xref="InterPro:IPR020801" /db_xref="InterPro:IPR020806" /db_xref="InterPro:IPR020807" /db_xref="InterPro:IPR020841" /db_xref="InterPro:IPR020843" /db_xref="InterPro:IPR023102" /db_xref="InterPro:IPR029058" /db_xref="InterPro:IPR029063" /db_xref="InterPro:IPR032821" /db_xref="InterPro:IPR036291" /db_xref="InterPro:IPR036736" /db_xref="InterPro:IPR042104" /db_xref="UniProtKB/TrEMBL:A8XFD1" /protein_id="CAP31392.2" /translation="MDNTGEGSSDSSGTWERISDNSQVSLLPEFRLSVSPNLSTVLLR SGRGHHHLRFSSLLLFYLLPSLPRARIRIVFASLLLLFLNVFVRSADAFLFFFSFFVY LFPLSFFRSSDNMESTNWWQKQDDIVISGVSGRFPRCDNVKEFGDLLLAGEDLVTEDD LRWPPGFYDLPKRHGKLKELKKFDAGFFSVTPKQANFMDPQVRILLEASWEAMVDAGM FLSISHFIPLFGTETEIGKLCLSPDVPGSINPIDLRGSKTGVFVGCSASETSGALTQD PESVTGYTLTGCVRSMFSNRISYTFDLQGPSFSVDTACSSSLLALQLAIDSIRQGQCD AAIVAGAHLTLTPTAALQFLRLGMLTDKGSCRSFDDSGDGYCRTEGVAAIFIQRKKKA QRIYATVLHAKSNTDGYKEQGITFPSGERQAQLLQEVYSEAGVDPNSVYYVESHGTGT KVGDPQEANAICQVFCSSRSDSLLIGSVKSNMGHAEPASGVMSLTKILLSIERQMIPP NLHYNTPNQYIPGLVDGRLKVVTEPTPLPGGIIGVNSFGFGGSNTHVILKAADHVAPA ITQHPFTKIVTYCGRTQESVEKIFGEIEANKDDLYLQSLLANQANMPANLLPFRGFML LDRENNQAALKNITKVPITEPRPIYFIYSGMGSQWPGMAIELMKIPMYDESLRASSKT LEEFGLDVYGMLCNPDPEQYSNNTMNCMLAITAIQIALTDTLTALGVSPDGIIGHSTG EMGCGYADGGITREQTMRLAYHRGTTIMKHTEIKGAMAAVGLTWEEVKAQAPPGVVAA CHNGADSVTISGDAEGVASFCAQLKEKEIFAKVVDTSGIPFHSPAMLAVKDEMIESMR TAVPEPKPRSSKWISTSIPEEDWESDLAATCSAEYHVHNACSPVLFYEALQKIPANAV TIEMAPHSLMQAILRRSLQKTVTNVGLMNKPKSENDNELEGFLGSLGKIYQAGVNIQI SELYPGGQYKGVVPKGTPMIGPMWQWDHSQDWQTIDGRHMVAGGGGSIPASATYNIDP FAADSKEAYLLDHVIDGRVLYPFTGHMVLAWKTLCKLKSLDFQKTPVVFENINVYSAT IVTKPIKLDVVLTPGNGYFEIISDEQVAASGRIYVPEDNQPFYYGKLEDIRTSEIADR IELDTEDAYKEFLLRGYEYGQAFRGIYKTCNSGERGYLYWTGNWVTFLDSLLQTALLA ERSDTLRLPTRVRHLRIDPNKHLEHVVERDGIQVVELRNDHSTNGCIAGGVECCDLNA HSVARRIQVSGQLYHEKVFFVPHFDTNCLKQHNETAATLKDYTSVIKQTLFNGFSAWK SAGLLKKLKNGALIEKALPALKSSLSDVVLDDTVTRFMHDGKCTVLPHFTEMFKIQDS EDFEDQVIGKLKSVRGIFELDRLWAGAVLNDRIVKSLQDICIENSAGHHAKMAAVDLV STDQIRHCIEANSSHPLLEVDYTCVGATVDHLDESTLEIVGAKKQKIVLDEAFTGHGE LKNMDYVLLDKVLNKKADPIAFIEACKNLIRDDGFLLVVEVTAQYEIALAIEALLGTD LAGDANRQYGQFFTHEQLLKMFETTGFKICNYQSDPALMTTTYAVRRIASVPRDPAFI DVDDIKEFSWIEPLQKTVEERLNEPDAKTIWLVSNKCRNNGIVGLALCFVEENLKSNR FRSAFDMSATKAIRDGPPVWNIGDEETKKIIDLDMHANDYMDGQWGSMRHIVVKDEDA HVYKDCEHAFINTLTRGDVSSLTWFESPNQYFDSMAKTKSSQELCSVYYAPINFRDIM LAYGRLPPDAIPGNFADRECLLGMEFSGRLKDGTRLMGILPAQALATTVMVDRDYAWE VPSDWTLAEASTVPVVYTTAYYALVRRGMMKKGDKVLIHGGAGGVGQAAIAIALAAGC EVFTTVGSTEKREFLKKLFPQLKEHHFANSRSADFELHIRQHTKGRGVNIVLNSLANE MLQASLRCLARHGRFLEIGKVDLSQNSSLGMAKLLDNVSVHGILLDSIMDPTVGDLEE WKEIARLLEQGIKSGVVKPLHSHSFPADKAEEAFRFMSAGKHIGKVIMEIRQEETTKV CPPSRISVRAICRTLCHPQHTYLITGGLGGFGLELAQWLINRGARKLVLTSRTGIRTG YQARCVHFWRRTGVSILVSTLNIAKKSDAVELVKQCTAMGPVGGVFHLAMVLRDCLFE NQNIQNFKDAAEAKYYGTINLDYATREDTVKEHLKWFVVFSSITSGRGNAGQTNYGWS NSCMERMIDQRRADGFPGIAIQWGAIGDVGVILENMGDNNTVVGGTLPQRMPSCLSSL DNFLSWNHPIVSSYIKADMGAKKSAGGGNLMQTIAHILGVNDISQLNPDANLGDLGLD SLMGVEIKQALERDYDIVLSMKDIRTLTLNKLQQLAEQGGTGGTALQVNELEMKKDGE RDAELNTVEMLEKQMNQLFKMRVDVNDLDPQDVIVKANKAEEGPITFFVHSIEGIATP LKKVMSKCEFPVYCFQATKNVPQTSIEDVAKYYIREMKKVQPTGPYRLVGYSYGACIG FEMACMLQQSDGQDAVEKLVLLDGSHLYMQTYRNVYRMAFGVTGDTLVNNPLFESEIM CAMTLRFANVDYKKFRVELLQQPGFKARVQKVVDTVMTTGLFKSPETVAFACMAMHSK FLMADKYKPERKFRGHITLIRAEQGAAREEDVGRDYGISQVSDDSDVHVVEGDHDTFV QGKSSAKTVSIINSLILNN" CDS join(415595..415664,415708..415811,416048..416260, 416310..416407,416453..416529,416980..417086, 417132..417314,417359..417483,417531..417735) /gene="CBG12410" /locus_tag="CBG_12410" /standard_name="CBG12410" /product="Protein CBG12410" /note="contains similarity to Pfam domain PF03314 Protein of unknown function, DUF273 contains similarity to Interpro domain IPR004988 (Protein of unknown function DUF273)" /note="Predicted" /db_xref="InterPro:IPR004988" /db_xref="UniProtKB/TrEMBL:A8XFD2" /protein_id="CAP31393.2" /translation="MAIFSTYSVCSKLHSKPAQMSSLENYQIEKCRGTHERGGEKEMD QEFDRQRKKKLQKRKVELTDQFSLSRNAKSKKLDITVLIIVNDAESAEKEYDTSLNSI RCYCENQKYRLEIVEDTDFRHFCQQENSIFRRHCIVAHLLRESEYVFLLEPGMAVVND DIRLEEFIDDRYDMTMYDKFTSWEIDTSSYVVKNTVWSRDFLMKLAEFETKIPSSSND NTALHILLQKTFYPQFTEDAGNCMKILENLEFSTGNQQIMLTFEACIRSVIGENHEFK NNLRIIKKGTAWTREIWLTDSKWNQNRDFILNGLKNSHQTTFAHGVLSDILLGRQTWR SPFMKTPSQEKCDFSKWEYDQSLIVSKFEIDEYLMEKFEEVEKMRWQSLAAVGNYMSK V" CDS join(420616..420705,420750..420899,420948..421901, 421956..422216,422258..422359) /gene="CBG12411" /locus_tag="CBG_12411" /standard_name="CBG12411" /product="Protein CBG12411" /note="contains similarity to Pfam domain PF03941 Inner centromere protein, ARK binding region contains similarity to Interpro domain IPR005635 (Inner centromere protein, ARK-binding domain)" /note="Predicted" /db_xref="GOA:A8XFD3" /db_xref="InterPro:IPR005635" /db_xref="InterPro:IPR039130" /db_xref="UniProtKB/TrEMBL:A8XFD3" /protein_id="CAP31394.2" /translation="MPPRTRNTRKKAVELAPTMKRMMEVKNSELIFNNDEIPYSSDTL NIFSEFYEAVDKIADNVTAKYKPMFDVKEVLQKYLKDIPRDFVPNLETKEEIKNETMD LLETEVESLEDMEIGVASNRTEDWRGIRSQTLTSSEDDLDNPSISDAITTQLEEMSIV EDLELNIPLLTSTPIKTELSLKIDDEQLTTDGIKINSEQIKDVNDLETTGSVVEIVEK KEVEESKPRTLTTTDKGQKEGSTVLKSSKLSSPIPKASSTVSPHQYSNRNNLHTPRTT DIRLRTPKVDPTKLHTTKKENRGSDSHDSKMAHANELRSKLLLLKKEKIREDNERKAS EVLERKKALEEQKMKQKSSSRHGASLKRTETLAGGQGPNKKTRVHLFPKEDKASVLDT SDVVVLTHSVKKQEIGFTTNSNKMTSHRGVCRENTTSDYGLDDLNSDEDTDDENNPRN EIPMWAEFSFVKRSVREHIENPPFDLDEFFGKIEKPNLQEIFGKIIKAKLEDLLRAGI EDRQNEQNTE" CDS join(<423747..423969,424023..424144,424195..424508, 427030..427144,427618..427877,427920..428018, 428067..428164,428213..428355) /codon_start=1 /gene="Cbr-tba-6" /locus_tag="CBG_12412" /standard_name="CBG12412" /product="Protein CBR-TBA-6" /note="C. briggsae CBR-TBA-6 protein; contains similarity to Pfam domains PF00091 (Tubulin/FtsZ family, GTPase domain) , PF03953 (Tubulin C-terminal domain) contains similarity to Interpro domains IPR002454 (Gamma tubulin), IPR002452 (Alpha tubulin), IPR002453 (Beta tubulin), IPR000217 (Tubulin), IPR003008 (Tubulin/FtsZ, GTPase domain), IPR004057 (Epsilon tubulin), IPR002967 (Delta tubulin), IPR018316 (Tubulin/FtsZ, 2-layer sandwich domain), IPR017975 (Tubulin, conserved site)" /note="Predicted" /db_xref="GOA:A8XFD4" /db_xref="InterPro:IPR000217" /db_xref="InterPro:IPR002452" /db_xref="InterPro:IPR003008" /db_xref="InterPro:IPR008280" /db_xref="InterPro:IPR017975" /db_xref="InterPro:IPR018316" /db_xref="InterPro:IPR023123" /db_xref="InterPro:IPR036525" /db_xref="InterPro:IPR037103" /db_xref="UniProtKB/TrEMBL:A8XFD4" /protein_id="CAP31395.1" /translation="REVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDSYDEE TETINTFFAETAGGKHVPRCLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCY ARGRYTIGREMIDVVMDRVKRLAENCNGLQGFVIFHSFGGGTGSGFLSLLMERLSTEY GKKPKLEFAIYPAPQVSTSMVEPYNSILMTHTTLEHSDCTFMVDNEAIYDICRRNLDL ARPTYTNLNRLVAQIISSITASLRFEGALNVDLTEFQTNLVPYPRIHFPLVTYAPLVS AERASHEQNTVADMTHACFEPGYQMVKCDPRRGKYMAVCLLYRGDVVPKDINSAIASV KTKRTVQFVEWCPTGFKVGINYQPPTVVPGGDLGKQTRSVCMISNTTAIAEAWARLDH KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEIGEDELPDDIDDQSYRG RSAASRY" CDS complement(join(424593..424620,424664..424705, 424754..425012,425059..425325,425372..425780, 425825..425969,426015..426222,426267..426324)) /gene="CBG12413" /locus_tag="CBG_12413" /standard_name="CBG12413" /product="Protein CBG12413" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFD5" /protein_id="CAP31396.2" /translation="MNSNERSKYLCDQYGEALGEQLKPNSSQYVLADLNKNTSKDNAK IVQKIDSEYILRDLQNQANKDQVYSRDAPNRPFLTGTPVNAKEIRSRIESLDNAIVVP QIINGKVYFTTHGDADARTAVEGSTSNPNLNEGNASGPKQEGIDITKVKFTFGQLVTL LGPETCQRLEREFAKNNKLSDAEMNQLRTARESVSELALGTARSTESTRTAQSVEPNL LSTRTANSLEPNLLSVYSARSPGIFTKNDGILTAQSPEPNLLSVRSAKDLTAMSPGVL TAQVLEPNLLSTRTARSTESTRTAQSVEPNLLSTRTANSLEPNLLSVYSARSPGIFTK NDGILTAQSPEPNLLSVRSAKDLTATSPGVLTAQILEPNLLSTRTARSTSNTDHQESK DVLTAVEIQPPTIGVLTARSIATPSSSNHSTITAQEIESIRSSKDVLTAVEILTDMSR SSQDVRTAVEIPDNAGSQMTI" CDS complement(join(428795..429049,429929..430012)) /gene="CBG12414" /locus_tag="CBG_12414" /standard_name="CBG12414" /product="Protein CBG12414" /note="Predicted" /db_xref="GOA:A8XFD6" /db_xref="UniProtKB/TrEMBL:A8XFD6" /protein_id="CAP31397.2" /translation="MAESIIDFVLVAIILAALAVATLILLFMYSTRIRQPFQKCLGRR TDKTEDVETGIAPKRTTIRVVKSLPNSSLPPTPSAYTKPPIRRYFNVLNLPGSRQKQF QSSYKSSRGI" CDS complement(join(430552..430773,430818..431096, 431147..431224,431270..431349,431400..431475)) /gene="Cbr-syx-7" /locus_tag="CBG_12415" /standard_name="CBG12415" /product="Protein CBR-SYX-7" /note="C. briggsae CBR-SYX-7 protein; contains similarity to Pfam domain PF05739 SNARE domain contains similarity to Interpro domains IPR006011 (Syntaxin, N-terminal), IPR000727 (Target SNARE coiled-coil domain), IPR006012 (Syntaxin/epimorphin, conserved site)" /note="Predicted" /db_xref="GOA:A8XFD7" /db_xref="InterPro:IPR000727" /db_xref="InterPro:IPR006011" /db_xref="InterPro:IPR006012" /db_xref="InterPro:IPR010989" /db_xref="UniProtKB/TrEMBL:A8XFD7" /protein_id="CAP31398.1" /translation="MDFNRDAGNETVSQLQLNIQNLNQQVIQLESFITNLSDSSAAGQ RERELFNRKAHDAQELSKETNALLKKLVVMSNSDKNLRGVRERLQNEYIGVLNRLQAS QRRAAQTEKAGMVAAEMDAQAAAESEMYGQQGRQGQMQMTAQQKGNLADIKERQNALQ QLERDIGDVNAIFAELANIVHEQGDMVDSIEANVEHAQIYVEQGAQNVQQAVYYNQKA RQKKLLLLCFFIILIFIIGLTIYLAK" CDS complement(join(432396..432554,432792..432920, 432970..433423,433466..433653,433707..433994, 434037..434279,434328..434456,434504..434680, 435668..435862)) /gene="Cbr-fcp-1" /locus_tag="CBG_12416" /standard_name="CBG12416" /product="Protein CBR-FCP-1" /note="C. briggsae CBR-FCP-1 protein; contains similarity to Pfam domains PF12738 (twin BRCT domain) , PF03031 (NLI interacting factor-like phosphatase) , PF00533 (BRCA1 C Terminus (BRCT) domain) contains similarity to Interpro domains IPR011947 (FCP1-like phosphatase, phosphatase domain), IPR004274 (NLI interacting factor), IPR001357 (BRCT)" /note="Predicted" /db_xref="GOA:A8XFD8" /db_xref="InterPro:IPR001357" /db_xref="InterPro:IPR004274" /db_xref="InterPro:IPR011947" /db_xref="InterPro:IPR023214" /db_xref="InterPro:IPR036412" /db_xref="InterPro:IPR036420" /db_xref="InterPro:IPR039189" /db_xref="UniProtKB/TrEMBL:A8XFD8" /protein_id="CAP31399.2" /translation="MEVHFEEDGECTAGHLKAIDGTFVLKDTVLLEFKVNGEVVGKVK TPCDGVVSFGKGLKPGVLLAKGQVIAVMAECRHDIVIKDMCGDCGKDLREKGGRAGQR KEQATANVSMIHHVPELIVSDSLAKEIGSADETNLITTRKLVLLVDLDQTIIHTSDKP MSVDAEKHKDITKYNLHSRVYTTKLRPHTTEFLNKMSAMYEMHIVTYGQRQYAHRIAQ ILDPDARLFGQRILSRDELFSAQHKTRNLKALFPCGDNLVVIIDDRADVWQYSEALIQ IKPYRFFKEVGDINAPKNSKEQMPVQIEDDAHEDRVLEEIERVLTNIHDKYYEKHDLR DAEQPLLDVKEVIKDERHKVLDGCVIVFSGIVPTGEKLERTDIYRLCMQFGATIVPEV TDEVTHVVGARYGTQKIHQAHRLGKFVVTVQWVYACVEKWMKADEKQFELTKESTPPV GRPLGSKYVSDLSNMDTIGKAALADMNNEVDEALSDEDEGEGDDDDSDEPERQDEDEM KQEKGSEEKKEEIERKIEKTDEKEKKEEMKEKDNRGQKRKYCPEMDDGEEESDSEEED DEAPMSYKALLSRSRKEGRIVPETDEDEVYDVDDEKGHVAPTNMEDDDNEEDEDLPDS DDDDEFEDMAALIERQISDAADEKDNEMD" assembly_gap 435266..435512 /estimated_length=247 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(436272..436390,436444..436495, 436555..436638,436669..437175,437233..437450, 437489..438159,438260..438622,438673..438828, 439214..439935,440018..440185,440352..440580, 440629..440708,440755..440833,440879..440988, 441057..441203)) /gene="Cbr-tag-214" /locus_tag="CBG_12417" /standard_name="CBG12417" /product="Protein CBR-TAG-214" /note="C. briggsae CBR-TAG-214 protein; contains similarity to Pfam domain PF08783 DWNN domain contains similarity to Interpro domain IPR014891 (DWNN domain)" /note="Predicted" /db_xref="GOA:A8XFD9" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR001878" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR014891" /db_xref="InterPro:IPR025829" /db_xref="InterPro:IPR033489" /db_xref="InterPro:IPR036875" /db_xref="UniProtKB/TrEMBL:A8XFD9" /protein_id="CAP31400.2" /translation="MSSIHYKFRAELDYKTLQFDGLHIRGEQLVREICAKENLKLELF DLQLQNAHTKKMYSDDELIPRNSSIIVQRSPRKDAAKVQKVQAGVNSGMVNQADPSST SLDPSTHIASEEFENMDEAERLNHIRDQSTRAYDPANFRRRPQGIMTGPPPPTYTCNR CYQPGHWYKNCPMVMPKKDSFATHLFLFCTSSRSSFFFINFCVCSMNEDKRPCFVQKL SHFQLNTKRTTGIPSQELMETTADDPAAMLHPSGKYVVPIMHWKARQDTLAKKGEDGS SSPAQVDRKVPTELLCPLCQSLFKEAIVTSCCGNSYCAECIEQIIIDPENRKCPGADC GREVSLIRPLFCYLEFFQLSITSIIPNKTLRDAAAAWLGASAPGQLPAGQTIQEPEQI RIRIGLKAPTASGGQNIVAGISPGSGLIAQQPVVVPMSSAPPTIPLSSASQVSYINSM PNVPGIPSTTPVVIQDVTLPPPFLRQEIPPGIPGISGIPVYSQTPVAVGIPSAVHTAS SAYNTTPFDDAFSQRLAALSGISATESMHTSGKKRSHKDDRTRRKNRHDPRSRRRRES SSGSTSSSDTSYSSDDNSRHNRNRRDRGRDSKHRRSVEKERSKRSDERRRDRERDREH RDYREHRDSREMRNSGRSKDVKATSSSSSSHRRVRDEGRRKDRNRDDEKKYDRESNDD RECTNKDVESKDEDEIDGIIAEYGNVQVQEAETIAPVESEEHVKDEEGSTPLHESSTS PRSIPNRDEEEDDEPAADDEPVDEEEKGPLREKSLTASNHAIETSEAEVTETKDEEMP LVEEQSVEDDEVVANKKEDDDQLKDKESQASTINTADEDEEGEKKHKKNKKSKKSKKE KHRKKDDDDEDEERSRKKHKKHKKEKKSKREKREADSDHEQERKERKKNRGERNQKEN NNDSKDHHRSKDLKKERDDGSESRDKKYQDKKAGTERKHEKERRYIDEQDKKKERKRD RNADEYDSDAPQVKIKREEKNKDDQQDRDRKKEDPENGKDWRRKERDREVKDKKHDKY KEKEREDDNEKVKQREKEKERQKERDKEKERQKEKERQKEREKDKEKDKDSAKQIEKP RKSVHERLQKANTVNASASSTFSSRSAPSRKPVSFSLSSSKPTSSLRARQYSSSSSAK EDEEHCRVLQCSKQDRRKKEETDVESSGDKEKNKKSSRPSNEATVTKHKTPPQTYISP PSFLGPNILFTSPHSDSISCRSPSREASSL" assembly_gap 442524..442882 /estimated_length=359 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(444227..444319,444369..444705, 444752..444988,445038..445253,445301..445946, 446037..446250,446307..446468,446810..447078, 447649..448159,448492..448578,448686..449189, 449874..450146,450191..450337,450393..450497, 450624..450758,450832..450888)) /gene="CBG12418" /locus_tag="CBG_12418" /standard_name="CBG12418" /product="Protein CBG12418" /note="Predicted" /db_xref="GOA:A8XFE0" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR013083" /db_xref="UniProtKB/TrEMBL:A8XFE0" /protein_id="CAP31401.2" /translation="MSCRIIHETSTFTEGALAEQLFKLDATDVPCGFLPVKGDGEEVL EILFSKNPAHLRMYGSSEELTTPIVYKSLRNEAFIHKSDVFPLLFEAFRTTCNSTFHH LVWSMLSVMLKSREERLDATCEFVKYDESLFKKFQTEYQEIKDGLRFEMMMMPDKIVI KPKNYKFEKIFSRFKALTLKWRDDSFQDIKEILMGYFQRSEPGNRERLSVIIVGLEYL AEYLNDITKAHPEMFLPYDKVTNAHSPIGVRIFVDHNERFVMKSELFKAINLVNPKKK SIKYEEEDLILCMKHSEVVEEYKDLLGKIEFIQIEIPRTKHAAVPILTPPLSYCIPAV DALFEIFNRLIFGHQIFQKFTNDSWPVLAAALANLTPFFTPYHVSFLWFFKFQILFKN LKIDFLQILRKKPKKRYNYFLRRKTIESIDEKLENFCEKFSKIQLQLFLHTQNACHRL PNLHCDQCSLSPSTAKFKNSKWIDFRHDEVDCSFGKHLTLPNGSVLLMNYVLLNAEDV KQKNEFKFFILDDDDGAEVTKRLDYLSFKSKEGTKDKENLRSLEAFQRFYPQKKIYIR AIQSAVLRRYERRRVFTDEVLDVIAVVLRQQNTPIQEDDDEVLQIVPDQFHELGMIEM VENLGNELLEVINPTGSMMIRTQQAVFHVFQSILCNVNWTKKDNCKKHRNCLESLRSA IVALMKDYAAALEEGSYVWIIHADTHLEQLKNHCHFERNPIETSPFSRLQQLTPNTMV QNSTWIAEFKNLGFQKFLKFDAIEEKALCKAWEWRRRFFEAYMKTFFDDDEETYDISS IIWDELAFKLPSAVDEKKLTSNSAIEYMKKLLTNKKGSPNEELLEKVSNFVENKEDGD EDEQSSESEDDEDEEEIIIEKFSKIKKRSIAPERPNRVLDHLAAKTSTSIDIQKTSTS QNASKVMKDGIQKTTPLKKLPEIDVNQSKNCKKCLRTSEMCNEAKKELKMTQNKLEKL EKRTKKAGEVEKELKALKLGTKKKEKEAESRESELEKEKKENEELKMKVSRLEANETR MHLAEKNHSISQNELLEKITELSGQLKKEKEKNELLQSEKIDELTAQVKSQKERMELQ FLQNEERLNSEIRQKERGFQELRAALSIMSNEKESFQRENRNLRERIASILEAPPTPT VPESLSDGHPTHHRFALLGFQKIKDSLYHKKQLKKAKYMIQKLKSSTDLVEIHQIADY EYYQFEGKLLKYTKGVELNIQRIQETCDVSTVTPLPDSPEFSQRFMNLYWRIINNQSI TPSEIEVSDSECFICYVEMTSDQKTLQCEECKKVTHFECASKWLKIHRSCPHCRREML DPEEFPNLGQ" assembly_gap 451571..451772 /estimated_length=202 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 454228..455353 /estimated_length=1126 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(456231..456449) /gene="CBG12419" /locus_tag="CBG_12419" /standard_name="CBG12419" /product="Protein CBG12419" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFE1" /protein_id="CAP31402.2" /translation="MDTANHLMIIDASLQHSVPKTTNASMESAKSTMVFDTFFLVLQC FVQQVSSVQQECTALVDIVFSCEIDLFW" CDS join(458162..458234,458438..458518,458561..459109, 459368..459555) /gene="CBG12420" /locus_tag="CBG_12420" /standard_name="CBG12420" /product="Protein CBG12420" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFE2" /protein_id="CAP31403.1" /translation="MGVCRRIFKHYEPSELTICVTICCDPRSPPRFDHWNISKPGQPP KIISCSRDSTTYDENRERRSRRKIVKKGKKSDVFEKLGRSEISEKCDNIEVQILSDQP LLHSDSSTLISNDVAMMSSPEISLPMDEPKELESTDRAMSVTSLDSVAGLGGMMSMPE DSDDVVVMRRVIEETNSEETKKVEKEEPKLKGKQFDLASNGDVDASEIQSMINSGTTN KKKVLVRRKKKSTTPESAPRYRDFTETSIYMCIEMNKENIGEFVWDQKCTRIDALAAP ISELNRTTTPEIPVEIQIFD" CDS join(460693..460723,460771..460878,460928..461061, 461500..461664) /gene="CBG12421" /locus_tag="CBG_12421" /standard_name="CBG12421" /product="Protein CBG12421" /note="Predicted" /db_xref="GOA:A8XFE3" /db_xref="InterPro:IPR027817" /db_xref="InterPro:IPR038095" /db_xref="UniProtKB/TrEMBL:A8XFE3" /protein_id="CAP31404.2" /translation="MEQNDAIQSKDDVYSKDFAPKKINKDSSEYGRPKPGTLTEQRAK KAAAHVHREMLTLCEVVEDYGKREKEDGPIRITFGRLFTIYVNISDKVVGTLLRARKH KMIDFEGEMLFQKRDDHVIITLLLEGSELKAAIRAHAAANPKD" CDS join(462363..462443,463374..463444,463573..464008, 466760..467047,467096..467233,467281..467345, 467388..467536,467585..467669,467716..467743, 467746..467866,467909..467980,468031..468212, 468259..468639,468687..468762,468811..469070) /gene="Cbr-tax-2" /locus_tag="CBG_12422" /standard_name="CBG12422" /product="Protein CBR-TAX-2" /note="C. briggsae CBR-TAX-2 protein; contains similarity to Pfam domain PF00027 Cyclic nucleotide-binding domain contains similarity to Interpro domains IPR018488 (Cyclic nucleotide-binding, conserved site), IPR000595 (Cyclic nucleotide-binding domain)" /note="Predicted" /db_xref="GOA:A8XFE4" /db_xref="InterPro:IPR000595" /db_xref="InterPro:IPR014710" /db_xref="InterPro:IPR018488" /db_xref="InterPro:IPR018490" /db_xref="UniProtKB/TrEMBL:A8XFE4" /protein_id="CAP31405.1" /translation="MYSAPKLSNTNLAREIRKREFSYVDRQKASKPTPLSDDEWKSPR SEDSFDLLDPAHASQVPTTSHSPRPLPMPPVRPSEVVIQIDEVESPILGLMDDEPQHD AVDGRGRLEPSSSLDANSLSATRSSSVIEDDVRSQISFVMRERLHSIAKEVHRRTSAV REDLIRETPEDAVSVASNIPKQNEHRPSLMSLIGLQNRPESPQNDKSKRVCGISIYGT LHPYGRFYMTWLSLVTLSFLYNAFCIPLRSSYPYQTADNLMYWMIADYTCDFVYLVDM FLIKPRLRFTRGGIQVKSLSETYYHYLMTRTFKLDIISVLPTDIVYIFTGNKPILRLN RVFRIHSFWLLFDMLDNSFANPYAIRIARTLSYMIYIIHCNSCVYYKLSAMQAFGQIA YFENGKWYLNKWVYNNQGNAYIRCFYFTAAVATSTGNNPAPTNVIEYIYMTCSWMGVF VFALLLGQIRDIVSNANRNREEFQRKMDQALGECKKLGLRQETTNRVRDWFIYTWQQQ KTLDEKKLIEKLPLKLQTDLALSVHYTTLSKVQLFQDCDRALLRDLVLKLRPVIFLPG DMICLKGDVGKEMYIINQGILQVVGGDHNEKVFTELSQGAVFGEISLLAIGGNNRRTA SIRAKGYCTLFVLAKEDLNDVIRYYPQAQAILKRKAAAMLKNDKKSDEKTEKIKQQAD LEDRCKINPRQVPKLITLIANMEEMNENKGVRDLKKAIEEETDKSRRQSIYYPWSTLQ RDDDDEDDEWMDEDLSDIGEDSDIEPVNREGPMDDDVDPMEDIDLSAEVPHSDEEGDR PGTSGTRKLHAE" CDS complement(join(464325..464588,464635..464802, 464846..465171,465220..465913,465958..466068, 466115..466222,466279..466344)) /gene="CBG12423" /locus_tag="CBG_12423" /standard_name="CBG12423" /product="Protein CBG12423" /note="Predicted" /db_xref="GOA:A8XFE5" /db_xref="UniProtKB/TrEMBL:A8XFE5" /protein_id="CAP31406.1" /translation="MNVLILMVVFIVIHRAHVSNVKNFVEIKISYDNEKFKRPNLSVI HFSGANDCHDAANWVKDRQGKPWIQCEVRINYTRCFCDIQNGDCWDFEDVMEAIYSVD RDKAIASIPEDSYSHAGNGKEAIEKIKIILNTLHENALNLSDQLHNQTILTSSYTSVA GIDKSCSVSSKPNFNESEALINRREVGLKVYPDDNYCFQFFSRFNYNLYNQSTMILML REKLLDQIDSKEKLYLCETLSKNTTEKKCELGKIKDKLPEKWMSFMKFTSGRGKFDSE LDYSEIKNYFKWMRIDNNSSSKAQGIIVSWIFASLLLVMVLVIIRSVSKYELIEERKC LDSSQFKLKDIENELKKAMSGKTPETSVMTLEASRDLEKARQLDRKRQKKHKASIFRS TQLPTPKESSDLESVKRKNIDSQFLKLQKTQNDVTEFIGTAIEAKLPSVPKHARPPAE KSLPSRTDQGTFVNRGKSDDNIVMKSIQKTQSLSEPEVIDMPTFPPPPTQPPILPPPP PPPILPKIPRSSRHKSPRQLESKRVKGKKPKSRSRSETPTKISRKKSKVDQSPNNQSP KDNKKHFLSFWS" CDS join(469890..470024,470071..470224,470269..470420, 470465..470544,470590..470675,471069..471196, 471249..471341,471384..471569) /gene="CBG12424" /locus_tag="CBG_12424" /standard_name="CBG12424" /product="Protein CBG12424" /note="contains similarity to Pfam domains PF12695 (Alpha/beta hydrolase family) , PF12697 (Alpha/beta hydrolase family) , PF06342 (Alpha/beta hydrolase of unknown function (DUF1057)) contains similarity to Interpro domain IPR010463 (Protein of unknown function DUF1057)" /note="Predicted" /db_xref="InterPro:IPR010463" /db_xref="InterPro:IPR029058" /db_xref="UniProtKB/TrEMBL:A8XFE6" /protein_id="CAP31407.1" /translation="MATAVEKALLKQPYFDLNTLCKTVFVTYKAGPKLDKIVTVQSQY VDICNKPGVRGTVVSLAGSPGSHNDIKYMRDSFEKHNIRLVCTNWPGSEFVTGGLRDS YTNDERNSYVKALMEKLGMKKVEKLIVMGHSRGGESALQMACILSEDRSWPLIGAVMI NSPGFVPHRGISMRMGTINTLAYLIKLRWKAIDSVLFPVLDWFYNDFVGLRVADGKVS AAAILPMQTFAFDKQKVSMDEMKKKPWVRMFYAYGSDDFLVDESDSEELAMYFKGDHY VIHNRKESEEAIPKIWDSYARGQSYVTANFTAEGHYLQKTYPEFLIQVLGGMFDVETK GPK" CDS complement(join(471719..472027,472078..472321, 472368..472474,472523..472635,472682..472768, 472812..473203,473250..473455,473501..473640, 473716..473785)) /gene="Cbr-acr-19" /locus_tag="CBG_12425" /standard_name="CBG12425" /product="Protein CBR-ACR-19" /note="C. briggsae CBR-ACR-19 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR002394 (Nicotinic acetylcholine receptor), IPR018000 (Neurotransmitter-gated ion-channel, conserved site), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain)" /note="Predicted" /db_xref="GOA:A8XFE7" /db_xref="InterPro:IPR002394" /db_xref="InterPro:IPR006029" /db_xref="InterPro:IPR006201" /db_xref="InterPro:IPR006202" /db_xref="InterPro:IPR018000" /db_xref="InterPro:IPR036719" /db_xref="InterPro:IPR036734" /db_xref="UniProtKB/TrEMBL:A8XFE7" /protein_id="CAP31408.1" /translation="MMFNICQLIVIANMIIYGSEGAKVIWTGDHERRLYAKLAENYNK LARPVRNESEAVVVHLGMDYQQILDIDEKHQIMNSNVWLRMSWTDHYLTWDPSEFGNI KEVRLPINNIWKPDVLLYNSVDQQFDSTWPVNAVVLYTGNVTWIPPAIIRSSCAIDIA YFPFDTQHCTMKFGSWTYSGFFTDLINTTISPATYKPNGEWELLGLTSRRSIFFYECC PEPYYDVTFTVSIRRRTLYYGFNLLLPCMLISSLALLSFTLPADCGEKLNLGVTIFMS LCVFMIMVAEAMPQTSDALPLIQIYFSCIMFQVGASVVATVIALNFHHRSPEQYKPMH QFLKSLLLNWLPTLLGMERPDVLEMSVHGAHYKPENKKNQRQYLIEVERHVLTRPNGN GHSAVDKAIHLDLSTGNPDNKKSPSPKKTNAAIVGMGGLPTTQMNGGLESSINKYTCT KVTRPMENGSITHKASSPPTNLSNNNNIFKSNNSKPQTEERHFHHILNELRVISARVR KEEAMHALQADWMFASRVVDRVCFLAFSAFLFMCTAIISYNAPHLFA" CDS complement(join(483585..483785,484421..484660, 484708..484794,484844..484982,485029..485117, 485162..485272,485319..485613,485664..485769, 486775..486881,486925..487028)) /gene="CBG12426" /locus_tag="CBG_12426" /standard_name="CBG12426" /product="Protein CBG12426" /note="contains similarity to Pfam domains PF08840 (BAAT / Acyl-CoA thioester hydrolase C terminal) , PF04775 (Acyl-CoA thioester hydrolase/BAAT N-terminal region) contains similarity to Interpro domains IPR006862 (Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase), IPR014940 (BAAT/Acyl-CoA thioester hydrolase C-terminal), IPR016662 (Acyl-CoA thioesterase, long chain)" /note="Predicted" /db_xref="GOA:A8XFE8" /db_xref="InterPro:IPR006862" /db_xref="InterPro:IPR014940" /db_xref="InterPro:IPR016662" /db_xref="InterPro:IPR029058" /db_xref="InterPro:IPR042490" /db_xref="UniProtKB/TrEMBL:A8XFE8" /protein_id="CAP31409.2" /translation="MKHLNIDKADSLQPEHVHITANGLRPGGTYRFDMQLRHNYGSHA SYCVLKADENGNIDMKTAKPLRGTYFEADGMGLFLSMTPCEDFAYGGYLRCTPPIPFF YLLILSDESGTKLDEMYIKKHWMHPLLTRTEIEHDGFCGTLFKPPGDGPFPCVMDISG TGGGLHEHKGAMLASEGFVVICVAFFQFKDLPYKMEDVDVEYFLKPIEFVLGLPYTTN MLGIQGVSFGATIVDLLSTRYPQIKAVVSINGPHAQSHYCLLKEHGKPMDVPYLDDSK LFFINTILATAPCFKTLTPVLTPETSIPWHRIPKDTAYRLIGSVDDLCAPSIHSNLHI QKKLQETGHYVELELVNGGHIMEPPYFPHHDIVYAKFQGFYCGYGGEIVLHAKSQERT WANTINFFKRKLGSPPPMPDWMRLTKVDGPLRPITIHKPKMLYTIAAVGACAYFAVTD SIVKKAVVETVKAVVWPTSDEQVAAQMKEKKTDKEDEDWALY" CDS complement(join(488246..488445,488492..488622, 489162..489310)) /gene="CBG12428" /locus_tag="CBG_12428" /standard_name="CBG12428" /product="Protein CBG12428" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFF0" /protein_id="CAP31411.1" /translation="MNVPSTSTRGYAKYQIRSSGMPRVLANESDVFTLDDVEVDEETE ELKPNRIPVTKEEEEKSRLVECNLDSDEEDEKTPPQEDDKGQNIRQSSKNSSTVESKE RCRLRDSFDLDNDDSLSDDLDLLPPIPGAPNTNTSWCAKLHRFNCCNPRIPSKCTIM" CDS complement(join(489527..489649,489696..489877, 489924..490050,490097..490201,490248..490462, 490510..490593,490643..491012,491063..491152, 491371..491412)) /gene="Cbr-hgo-1" /locus_tag="CBG_12429" /standard_name="CBG12429" /product="Protein CBR-HGO-1" /note="C. briggsae CBR-HGO-1 protein; contains similarity to Pfam domain PF04209 homogentisate 1, 2-dioxygenase contains similarity to Interpro domain IPR005708 (Homogentisate 1,2-dioxygenase)" /note="Predicted" /note="C. briggsae CBR-HGO-1 protein; contains similarity to Pfam domain PF04209 homogentisate 1,2-dioxygenase contains similarity to Interpro domain IPR005708 (Homogentisate 1,2-dioxygenase)" /db_xref="GOA:A8XFF1" /db_xref="InterPro:IPR005708" /db_xref="InterPro:IPR011051" /db_xref="InterPro:IPR014710" /db_xref="UniProtKB/TrEMBL:A8XFF1" /protein_id="CAP31412.2" /translation="MHFLFEMLFEFTTQLKYLTGFGNEHASADPRVPDALPVGQNSPQ KCAHGLYAEQLSGTAFTAPRCQNQRSWLYRIRPSVIHRPFEAIKDNGQNWTNDFSSIP PNPNQYRWNPFPLPTKEGVTFVENLYTVCGGGDVIGRTGLAIHQFSCNASMEHTAMYN SDGDFLIVPQQGSLEITTEFGRLLVNPQEIIIIPQGIRFSVGVRGPSRGYILEVYGTH FQLPDLGPIGANGLANPRDFETPEAWFEDLDVEYTVINKYQGAWFQAKQGHSPFDVVG WHGNYCPYKYDLRKFMVINTVSFDHCDPSIFTVLTAPSVKHGTAIADFVIFPPRWGCA DNTFRPPYYHRNCMSEYMGLITGCYEAKEGGFKPGGGSLHSMMTPHGPDFNCFEMASN VDLKPQRVAEGTMSFMFESSLNMAITNWAITQNVDKDYYKDWQPLKKHFTLPK" CDS join(495529..495628,495676..495839,495892..496282, 496329..496411,496455..496538,496582..496641) /gene="CBG12430" /locus_tag="CBG_12430" /standard_name="CBG12430" /product="Protein CBG12430" /note="Predicted" /db_xref="GOA:A8XFF2" /db_xref="UniProtKB/TrEMBL:A8XFF2" /protein_id="CAP31413.1" /translation="MAEISERYVEQFVTTIETMRRRVIAYYDGIFYLGRKIEKAAERL KEVATPASYDARDYVNLSLAENGPLETIETETKNNLVEMYLGISVILIGLAGGQLSGA YALAPLIQYCFDSFIVFLILTALPVFVFYNVRKNSSLDDTERRSILISATLVFGIFSG YLVGPRILSLAPTTLFLPPFLFALMFDNGTVPTPLPSLNRQSFFISFASISVFVATSL ASIVLGNFSTSVSLFNIIHASGLYLHFQVILQLIKDKYFMVGESQTVYIGTVILLQLI FTLLFGYNTDVSQNVHK" CDS join(499009..499326,499372..499488,499536..499777, 499830..499922,499967..500344,500401..500446) /gene="CBG12432" /locus_tag="CBG_12432" /standard_name="CBG12432" /product="Protein CBG12432" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFF3" /protein_id="CAP31414.1" /translation="MSKDTVSSKSKSSSKSDRGSASIFFFKWTASTLDAYTKSIKNNY LKVLIAHCTRAREGDEEASKNFDYSELGANPRVVKDDREDIRRRLRDAQNRVWTNEEA KPETPISLAELSAVYRLKTLTKMCEKLAEIMGRMVKWFENNRKAFNKVVGMTQILEYI LRMFESACAMGEVFLLTSVNWKTCKFAKHMNPSAKEYSRSEDERLEITEKAESYCPKF LSQINYYRTLVYTLTCSFEGVLETIFITVNQERCEVRQKELTIVLQKLPPQYLFTKDT LEFSRRTANLLAKPPKNTFSFPTPQQDISEQSKRESEKILANSRKSAKISSCKYYHGR TGDAKSGKSGKSDKKETSLRSEPTQPSEKSKSKSKSKSKSKSKKSIIKKVLNKGSNSK RSEKD" CDS join(501140..501232,501282..501611) /gene="CBG25281" /locus_tag="CBG_25281" /standard_name="CBG25281" /product="Protein CBG25281" /note="contains similarity to Pfam domain PF00125 Core histone H2A/H2B/H3/H4 contains similarity to Interpro domains IPR007125 (Histone core), IPR002119 (Histone H2A)" /note="Predicted" /db_xref="GOA:B6IIJ9" /db_xref="InterPro:IPR002119" /db_xref="InterPro:IPR007125" /db_xref="InterPro:IPR009072" /db_xref="InterPro:IPR032454" /db_xref="UniProtKB/TrEMBL:B6IIJ9" /protein_id="CAR99729.1" /translation="MGRSSDSPSPTVAQSISGSRPSLLKSKPIHLRKSRSKRAGLTFS VSRVDRKLHEGANGNRISSGASVYLAAVLEYLTSEIVGISGIESKKKNKKRVTPRHIT LAIKMDNDFNSLFKDITIAQGGVLPKPKEEIQSNSNQN" CDS complement(join(501901..502144,502189..502451, 502494..502811,502861..502972,503015..503142, 503190..503367,503409..503520,503562..503963, 503992..504116,504167..504255)) /gene="Cbr-prmt-7" /locus_tag="CBG_12433" /standard_name="CBG12433" /product="Protein CBR-PRMT-7" /note="C. briggsae CBR-PRMT-7 protein; contains similarity to Interpro domain IPR014644 (Protein arginine N-methyltransferase)" /note="Predicted" /db_xref="GOA:A8XFF4" /db_xref="InterPro:IPR014644" /db_xref="InterPro:IPR025799" /db_xref="InterPro:IPR029063" /db_xref="UniProtKB/Swiss-Prot:A8XFF4" /protein_id="CAP31415.2" /translation="MFLERVNQKTGEREWVVAQEDYDMAQELARSRFGDMILDFDRND KFLEGLKTTIPEKKKENGDGLVHVLDIANITFPGTGTGLLSLMAAREGADKVTALEVF KPMGDCARHITGCSPWAEKITVISERSTDVSQIGGTAADIIVAEVFDTELIGEGALRT FKEALQRLAKPGCRVVPSSGNVYIVPVESHLLKMFNTIPRINGGEDEHPLGTCSGTAS VFDVQLSELETHEFRELAEPIVAFKFDFENEEKIIYNESFVREAIAHTSGTIDAIMMW WDIDMDGKGETFIDMAPRWKNPKHYAWRDHWMQAVYYLPDKKCVEKAQKFEIICNHDE FSIWFSDVGKDSTRSYCVCGLHSMLSRQTVYHINEMFEDQSFRAEVDRLSSGLNVVTV GEGSFVGLLAAKTAKTVTIIEPNERFRDIFHKYVLYYNMKNVHIVEKVTHLIEKPDIV IAEPFYMSAMNPWNHLRFLYDVEILKMLHGDDLKVEPHLGTLKAIPECFEDLHKIAAD VNTVNGFDLSYFDRISTKARAATDAIVDEQSLWEYAGTVKGEPVELLTFPVDGRILSR KCVGKMDNMQSSNGIPIWMEWQFGDLTLSTGLLSTSESRKPCWNKGYKQGVYFPITNL QNESSINLNALFDKSSGDITFQFKKFDVQSGN" CDS complement(join(504680..504785,504832..505052, 505105..505170,505217..505303)) /gene="Cbr-snx-12" /locus_tag="CBG_12434" /standard_name="CBG12434" /product="Protein CBR-SNX-12" /note="C. briggsae CBR-SNX-12 protein; contains similarity to Pfam domain PF00787 PX domain contains similarity to Interpro domain IPR001683 (Phox homologous domain)" /note="Predicted" /db_xref="GOA:A8XFF5" /db_xref="InterPro:IPR001683" /db_xref="InterPro:IPR036871" /db_xref="UniProtKB/TrEMBL:A8XFF5" /protein_id="CAP31416.1" /translation="MASATQRIPSKRQTLDEAYAPPANFLEIEVINPITHGVGKMRYT DYEIRMRSNLPVFKQKESSVRRRYSDFEWVRAELERDSKIVVPTLPGKSLKRQLPFRS DDGIYEEEFIENRRKALELFINKVAGHPLAQNERSLHIFLQETTIDKNYVPGKIRTA" CDS join(505843..506748,506861..506942,506957..506961, 506992..507242,507296..507422,507483..507828, 507881..508106,508213..508290,508342..508468, 508516..508623,508674..508782,508831..508997, 509045..509484,509529..509640,509687..509842) /gene="Cbr-rad-54" /locus_tag="CBG_12435" /standard_name="CBG12435" /product="Protein CBR-RAD-54" /note="C. briggsae CBR-RAD-54 protein; contains similarity to Pfam domains PF00271 (Helicase conserved C-terminal domain) , PF11496 (Class II histone deacetylase complex subunits 2 and 3) , PF00855 (PWWP domain) , PF00176 (SNF2 family N-terminal domain) (2)contains similarity to Interpro domains IPR000330 (SNF2-related), IPR014001 (DEAD-like helicase), IPR021006 (Histone deacetylase complex, subunit 2/3), IPR001650 (Helicase, C-terminal), IPR000313 (PWWP)" /note="Predicted" /db_xref="GOA:A8XFF6" /db_xref="InterPro:IPR000313" /db_xref="InterPro:IPR000330" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR038718" /db_xref="UniProtKB/TrEMBL:A8XFF6" /protein_id="CAP31417.2" /translation="MPSKTFNPGDFVWAKFPGFPPWPAEVRNAYIFLHSLKSVKVLQC ELKRGKPNYTVRYFGSKEEGVVKFDEVDDYYEKRKRFGKSKRVKGFDQAVEEIEAIIE EKVLKMTQEGVDEVSPVQTTLAPAKTDLPPTSTSSGSDDQIIVEAPEPYAITTVKDEK EVVEESTSLCSGSSHLHPHSIEDDNQHTEVSKIPRFESPIAIERARIRLDDTDDEDFL NLLDENDETVLTESSGITEVKTEKTTLKKTEVVELIVDEEERTIPIKNSSKEIVVIEN TKEAGSSDDFVSSTKRKREESPKNLYTNNKFGFSSSTKTKKFGIFSKSNRTQELLIHK SFVSPFSTSVSPTKQGLRRKKKAPPAIEPPVSVEKRIRFDLLTSTYLMKEWLLNLVII MPWLQSCYLGNFRSQWKDTCVRFLGLGGNRRKCALFDPYHEGALILYAPEQLSEHAQL KEDKDRKVHVVADPVVGKILRPHQRDGVKFMWDCVTGVNIPEYHGCIMADEMGLGKTL QCISLLWTLLRQSPDACPTVSKSIIVCPSSLVKNWDKEIKKWLGTRLNAMPVDSGKRE LIIQCLNSFMSDSKMRCAIPVLIISYETFRLYANILHSGEVGIVICDEVSSYFVFSIH NLFTGTSFEKQRKLNLPSFERTEILVNFVNPGLLGTASEFRKKFENAILKGRDADASA EDQKKGEEKTKEMVSLVEKCIIRRTSALLTKYLPVKYEHIICCKNSTLQETLYNKLIE CEKQNRITEKDKGATASALSFITHLKKLCNHPYLVYEELQKPDNRFRTKCLSVFPEAF NPKSFDPSFSGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQFMALCKLRGYDFVRL DGSMSIKQRSKIVDTFNDPASTIFCFLLSSKAGGCGLNLIGANRLVMFDPDWNPANDD QAMARVWRDGQKKTCFIYRLLATGSIEEKMFQRQTHKKALSSCVVDAGEDVARHFSNE QLRELFKLESASASDTHSKLKCKRCIQGLESVDPPVNADCTSDLANWFHSEKSARKVA DNVLRAVFECGSISFVFHQKSHNVEAKKVEEKIEELDEDYVPSEAEDDD" CDS complement(join(510910..510993,511048..511265, 512110..512281,512785..512873,513906..513951)) /gene="Cbr-rsbp-1" /locus_tag="CBG_12436" /standard_name="CBG12436" /product="Protein CBR-RSBP-1" /note="C. briggsae CBR-RSBP-1 protein ;" /note="Predicted" /db_xref="InterPro:IPR026512" /db_xref="UniProtKB/TrEMBL:A8XFF7" /protein_id="CAP31418.2" /translation="MRQHSMANPKKIQEVSGARVQRATCTLSCSNTRNRNSSRWSFAK KETEISLFDLKDFNIVIKFRNHKDLATFHFREVETAGRACQKAVEAANNVVLPQLRAD DAEIARHGSLFIGCVGAYLIEMKRCVKLEKTFPAPTEPSVTRQQVERVETILDTLENL ITVHYSTNEQPCLDKLQVTPRRRRATSCRPQCVCSKLKTSYA" CDS complement(join(516485..516826,516925..516993, 517066..517195,517263..517327,517375..517578, 517746..517950,517997..518244,518292..518372, 518424..518483)) /gene="CBG12437" /locus_tag="CBG_12437" /standard_name="CBG12437" /product="Protein CBG12437" /note="contains similarity to Pfam domain PF12253 Chromatin assembly factor 1 subunit A contains similarity to Interpro domain IPR022043 (Chromatin assembly factor 1 subunit A)" /note="Predicted" /db_xref="GOA:A8XFF8" /db_xref="InterPro:IPR022043" /db_xref="UniProtKB/TrEMBL:A8XFF8" /protein_id="CAP31419.1" /translation="MEDSQLTENNTDDMINEQNENTTDSNSKGVKKRVAQTPPENDAK KAKLSPEPSVVVLNDSPEKHDPKTPRTPKTPRTPKASKEDRERQRLEKLEEKERQRVE RERILEEKRREKEKLAEEKRLEKEKKEKERLERKLEEDRKKDEKRKEAEEKKKKDEEE KMKKEEERNRKKKEEEEKREAKKKEEEEKKEAKRREEEAIEEKKRRESAHFVKYFSKV EKKKVSEPQKSTSDWYYPFQQKDGMTMTSILPRVSLSSDCDLFEQHDEITTLAAFLKT ATKFVPVDCKPPKIKAKLFQFHENNRPPYYGSWRKKPMTITGSCPLKEEEGIDYDVDS DDEWEDEPSDCEEINSEDDAEKDEDDDGDEDDGFFVPPCYLSDGEGDEETTSDNEESG SKKKEKKPKRIKIESDDEDKSNDAERKARLAQRAEEWAKGTKKQMMLKPRAVGPVFNT GIDQPQDFMPMYALHFY" CDS complement(join(520735..520905,520953..521081, 521123..521173)) /gene="CBG12438" /locus_tag="CBG_12438" /standard_name="CBG12438" /product="Protein CBG12438" /note="Predicted" /db_xref="GOA:A8XFF9" /db_xref="InterPro:IPR001699" /db_xref="UniProtKB/TrEMBL:A8XFF9" /protein_id="CAP31420.1" /translation="MVLSTSQPTCDKKIIEKVFRILLIVNIKFPSHFDQTEVELVGFK QSELTFYSNLKKIDNISSSFDQESRISIRTMNYSENGTNANQHDLLQTDEIVKNLETN LIFVPYPLFSKCKL" assembly_gap 534531..534540 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(535086..535139,536764..536876,536927..537346, 537394..537623,537843..538057) /gene="Cbr-mef-2" /locus_tag="CBG_12442" /standard_name="CBG12442" /product="Protein CBR-MEF-2" /note="C. briggsae CBR-MEF-2 protein; contains similarity to Pfam domain PF00319 SRF-type transcription factor (DNA-binding and dimerisation domain) contains similarity to Interpro domains IPR002100 (Transcription factor, MADS-box), IPR000104 (Antifreeze protein, type I)" /note="Predicted" /db_xref="GOA:A8XFG0" /db_xref="InterPro:IPR002100" /db_xref="InterPro:IPR033896" /db_xref="InterPro:IPR036879" /db_xref="UniProtKB/TrEMBL:A8XFG0" /protein_id="CAP31421.1" /translation="MGRKKIQITRIQDERNRQVTFTKRKFGLMKKAYELSVLCDCEIA LIVFNSTNKLFQYASTDMDKVLLKYTEYNEPHESRTNNDIMDALNRKEGNNGGGGSDD DSPGPSISPAIQIPIPAVNGHNSNQNNSVASASSASAAAVAAAAAAVAAVEGTSSGAA AAAAALQASNAQRHHNLNLYQNLIFNPNYTRHLPQRNDPLTSSSSAAPSSSSSSSKHL DFPPSTSFAYDTSRLHPLAAADADCDLVPSSRAADQNIWSTNLQQRPVSQPAPSTSNL SANGISNGSSSLLSPNISSLNGHSVLDLGGPIPPYKMDPNAYIKVEPHSPPQKRPRIT TEWRQQQLT" CDS complement(join(539318..539469,539693..539891, 539979..540101,540146..540426,540512..540822, 541055..541536,541608..541701,541747..541838, 541886..542008,542165..542335)) /gene="Cbr-gei-17" /locus_tag="CBG_12444" /standard_name="CBG12444" /product="Protein CBR-GEI-17" /note="C. briggsae CBR-GEI-17 protein; contains similarity to Pfam domains PF02891 (MIZ/SP-RING zinc finger) , PF11789 (Zinc-finger of the MIZ type in Nse subunit) contains similarity to Interpro domain IPR004181 (Zinc finger, MIZ-type)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XFG1" /db_xref="InterPro:IPR004181" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR023321" /db_xref="InterPro:IPR038654" /db_xref="UniProtKB/TrEMBL:A8XFG1" /protein_id="CAP31422.1" /translation="MPPKTSRAQKPYDRPPQMPNGSRQPYGTHHYPQNPQMHNMVQMA SHHNGYPMGHMQAPVKIYADPFDTVRLPFFDVLNCLLQPIELQANNNNNKQNKMVACS FQTTPDQNNRLSTRADAITPRFEIQLRFFNITEPAAQQKDDFPVNCSVRINDQQVTLP NIIPTNKPNAEPKRPSRPVNITQYVQNYRGFKRDHNIVIDWLSDRRVYAAGVYFVHRL NSDILFQRLDSNNGKHRSISATKEEVMKKLSGGEDDIAMDQLVISLLDPLSKIRMKTP VRCEDCTHLQCFDLMSYLMMNEKKPTWQCPVCSGYCPYDRLIVDDYFLDMLAKVDKNM TEVELKVDGSYEVIKEEEGVCLSDDDDDDDVKPNVNTGPSSSNAVPENGGKKKKPVTE TDIITLDDSDDEDLNRGIQNSLNINHASERQSGSNGDRPKTPPPKKGNGAIEIITIDD SPPRPIAALAPQQPPMRQLSQQQLHNTAAPPSPAVLSAGHSPMGNGSTGVPTLQAAMD QIVERHTTQRMPHSSQSNLMQQAPVHMNYQHSYMNGQSSGPQTPTSQFGYTSMMPQPF QTQSGLIGRNNQMVHLQQQQHPSHQQHQQYQQHQQHPQHPQQQQGMMSPSYYSPQQIQ NGSHLGPPRLIACPGPSNTSRLNFPTGHLVDNPPPPGVTVRNSRRPNSRVN" CDS complement(join(545598..545675,545773..545988, 546098..546297,546969..547074)) /gene="Cbr-nduf-7" /locus_tag="CBG_12445" /standard_name="CBG12445" /product="Protein CBR-NDUF-7" /note="C. briggsae CBR-NDUF-7 protein; contains similarity to Pfam domain PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit contains similarity to Interpro domains IPR006137 (NADH:ubiquinone oxidoreductase-like, 20kDa subunit), IPR014406 ([NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB), IPR006138 (NADH-ubiquinone oxidoreductase, 20 Kd subunit)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XFG2" /db_xref="InterPro:IPR006137" /db_xref="InterPro:IPR006138" /db_xref="UniProtKB/Swiss-Prot:A8XFG2" /protein_id="CAP31423.1" /translation="MLSALRTAGALSTRRLASTQAIASNSEAPKGIATTGTPFLNPSS KAEYALARLDDVMNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQ ADLIFVAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVI PVDIYVPGCPPTAEALLYGVLQLQKKIKRKREAQLWYRR" assembly_gap 549895..549904 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(553341..553347,553618..553643)) /gene="CBG25282" /locus_tag="CBG_25282" /standard_name="CBG25282" /product="Protein CBG25282" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IIK0" /protein_id="CAR99730.1" /translation="MKVSFPYFPK" CDS join(554421..554585,554629..554796,555003..555146, 555194..555370,555607..555744,555790..556876, 557052..557609,557656..557879,557934..557954) /gene="Cbr-gld-4" /locus_tag="CBG_12446" /standard_name="CBG12446" /product="Protein CBR-GLD-4" /note="C. briggsae CBR-GLD-4 protein; contains similarity to Pfam domains PF03828 (Cid1 family poly A polymerase) , PF01909 (Nucleotidyltransferase domain) contains similarity to Interpro domains IPR002934 (Nucleotidyl transferase domain), IPR002058 (PAP/25A-associated)" /note="Predicted" /db_xref="GOA:A8XFG3" /db_xref="InterPro:IPR002058" /db_xref="InterPro:IPR002934" /db_xref="UniProtKB/TrEMBL:A8XFG3" /protein_id="CAP31424.2" /translation="MDEESRISSSHHPSTSYTGVSESDSEIQKTSDGLKLRGQSQQQE QPCTSKSQNVKMETRDFGYSDALPFAPWRRKRYGLTVQGLHEEIVDLYHWIKPNEIEV RLRTKVYEKVRDSVSQRWQHKPIKISMFGSLRTNLFLPTSDIDVLVECDDWVGTPGDW LGETARGLENDNIAESVTVFGGAFVPIVKMVDRDTRLSIDISFNTVQGVRAASYIAKV VKEEFPLIEPLVLLLKQFLHYRNLNQTFTGGLSSYGLVLLLVNFFQLYALNMRHRTIY DSGVNLGHLLLRFLEVYSMEFNYEEIGISPGQCCYISKSAAGARYGHKRAQPGNLALE DPLLTANDVGRSTYNFSSIANAFGQAFQILAVAVTLRERKGRNQLSRVYKGSLLHMIM PFTSKELTYRNWLMSGVMSFPSQDTSVTYNLNQLHNTLVSPMIDLSRYAWLRKTTAGA EKRDSRPLKITNPADDVRNQVLLQLRMKEAEESKEKEESVSNKKEEQITATTETETEE DEATSISSHERQEKSVSGRILTGPPLPTSTASVNTSATVSTAASISEREDTDSPELSS SLGNHSSEEDDDDPVMNDARKKSTGGVPVQFKKQFSDVVKTPKEFSRKTQTNFDDNKT TTGSVGQSFMNNHLYYPEPQPTASRRNGFLDYAAVAAASCGSHKHRQTYAQRNRQSRN HSQGSDASDGYDLDRKGLNNNNSSRARRNMRVPSNSSNRSRHSSDSRSRGRPNQMYFP MPPPIDFQSRRSQFVEANLTEENGHGSSLPLITDEPRSPRMYADAVKKKSSLPGAPIT SVDLNLVNGNTTRNGVASQASTSMMAPVSKTERSYRNAVAIPSASQAVVISQPKPSHP TMRKDNDCGLDTQSLNSSSSDLSRQPQLVPIGSRLTR" CDS complement(join(563970..564074,564120..564396, 564445..564603,564660..564731,564778..564917)) /gene="CBG12448" /locus_tag="CBG_12448" /standard_name="CBG12448" /product="Protein CBG12448" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFG4" /protein_id="CAP31425.1" /translation="MANTQNSTISSFDSSPEFPPITIHRPIDFPGTPTSEVLTPHPNP YPTEAYSSPFQISTPVIITPVEPRAVRNGVRLNQIRRIRRRQESRAIFGSIRRRLSMV SFRETLPEDRIASPQTLPRSKIVDKTKTAIELESPNRLQVMLSEEMNKICLSDEIDST NVPSDSYNSAKLREINRLEIMDSVFLALESGCEEEISNALESLEWNLGQLMHETEIID KIVEDFETERDEKKKKWDEVELILNIIKNDNP" CDS join(566373..566509,566556..566664,566708..566798, 566862..567100,567143..567253) /gene="CBG12449" /locus_tag="CBG_12449" /standard_name="CBG12449" /product="Protein CBG12449" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFG5" /protein_id="CAP31426.2" /translation="MNPADHWNPGWQQFVLNQQRAQAGGNRQAQPQAALNQFVPARQN NERNGQQQRRNNVPAQNRRIQNRNAVRREHRNPARELITRDDLERIEATTRKNFQTRT ALEYDNRENQYDIDEKSKQFSTTPKNLNSGDIQVQSEENICSNLRVENQNETILTTKE LLPNFDAIEQELSDALANLEIHLRTNALEYELIDNLYVDLIESVGKLTNETNELDDIL RRVDRMRLQQ" CDS complement(join(567404..567587,567916..568285, 568329..568393,568672..568835)) /gene="Cbr-clec-91" /locus_tag="CBG_12450" /standard_name="CBG12450" /product="Protein CBR-CLEC-91" /note="C. briggsae CBR-CLEC-91 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domain IPR001304 (C-type lectin)" /note="Predicted" /db_xref="InterPro:IPR001304" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="UniProtKB/TrEMBL:A8XFG6" /protein_id="CAP31427.2" /translation="MYINDMDFDVIYEMVYYIYCGRCQKDITDMATALXIAADKYPLP ESAESPKINEKASGNIITNEPSVHASDEPHQRLTFYNWDHTDLGTSVFEDLPPVVPHP LPLPINQSEQCPDGWLRYSDSCYFFETEHLGFAKAERKCYDKQATLFVANSLDEWDVV TSHTEKSSFSWIGLVRFNHYERLEKLPRWQTTGSINPSKINWLIKPYQPSVNGWSSIA NCAAVYQSPVTIGSVSYTFYYPCILQYTSICERNATIINAKN" assembly_gap 568968..569262 /estimated_length=295 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(571194..571565,571611..571766,571813..572001, 572053..572310,572472..572579,572628..572729) /gene="Cbr-mel-26" /locus_tag="CBG_12451" /standard_name="CBG12451" /product="Protein CBR-MEL-26" /note="C. briggsae CBR-MEL-26 protein; contains similarity to Pfam domains PF00651 (BTB/POZ domain) , PF00917 (MATH domain) contains similarity to Interpro domains IPR002083 (MATH), IPR000210 (BTB/POZ-like), IPR013069 (BTB/POZ)" /note="Predicted" /db_xref="GOA:A8XFG7" /db_xref="InterPro:IPR000210" /db_xref="InterPro:IPR002083" /db_xref="InterPro:IPR008974" /db_xref="InterPro:IPR011333" /db_xref="UniProtKB/TrEMBL:A8XFG7" /protein_id="CAP31428.1" /translation="MEPHVDGVYIGGVGNSGSDVVCVGVPALGVSSQTEIKVEKVQHT WTVKNFSHCYQEYLENFVYLQRGDEQLTWSIKIYPKGNGENNKDFVFLCLNRVINNNV KAGKIGFKSQFKLRTAENKDIEMRIHPNPSHSDYVSYIKRDVLFPQIMPRDMIIVHVE IDVAVETITTTNEPIQFEPINTEQQLVDDYQRLFCDELLTDFDINVNGRVIRAHKAVL AARSAVFNAMLTHQDTDEARTSVMYINDMDFDVIYEMVYYIYCGRCQKDITDMATALL IAADKYRIDELKNHCEKYLVENITVENACSLLIIGDIYTAAKLRRRAVQFILARPKNV TGTPGWDDILKCHPNLITDIFSQIERQSSTGATSSVSSLPGIPMDVPGVPGNNGPPPS GL" assembly_gap 573566..573787 /estimated_length=222 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(573964..574113,574163..574279, 574324..574486,574540..574631,574675..574749, 574800..574919,574964..575049,575096..575280, 575330..575426,575476..575617)) /gene="CBG12452" /locus_tag="CBG_12452" /standard_name="CBG12452" /product="Protein CBG12452" /note="contains similarity to Pfam domain PF05154 TM2 domain contains similarity to Interpro domain IPR007829 (TM2)" /note="Predicted" /db_xref="GOA:A8XFG8" /db_xref="InterPro:IPR007829" /db_xref="UniProtKB/TrEMBL:A8XFG8" /protein_id="CAP31429.2" /translation="MTNEKDVKPLVVRIILIVGGILGAHRLYLKQVPEAFVFFSTFGV FLIGWLYDSFMFKYEVEAYNQLINLNKENKDKEKWKNGRLQTAQSKFVEFSLTRFLYS VLYGLYIGIGTWLACTLTFGWTDINSIPFVSVVALGITAGVYIIGHCGGQSRELSFIW ISSFSSMFLMVRVFQSAVFRSIFIASIVSTLVGNRTAKNKRSRHTWRHFLFWSSLFMM LVCVILLGCSRKIGEKQITATRPGSFRETTSVGSLMRDRIFDSKKVYSFFEGNPIIEY SISDSSQTERSTASKKSNSFWQHVWSGELFDELTGAAHLTKIDWVELTMTFIVDVLRA EARVINKSSTVEPFKWALWRNYLIHRFSLDPLVSDDHIRSECKKWQQEQNQKRESSEK DFSMIAAKRGCATFQS" CDS complement(join(576100..576202,576248..576329, 576377..577078,577123..577326,577374..577633, 577679..577849,577898..578157,578206..578331, 578413..578433)) /gene="CBG12453" /locus_tag="CBG_12453" /standard_name="CBG12453" /product="Protein CBG12453" /note="contains similarity to Pfam domain PF02990 Endomembrane protein 70 contains similarity to Interpro domain IPR004240 (Nonaspanin (TM9SF))" /note="Predicted" /db_xref="GOA:A8XFG9" /db_xref="InterPro:IPR004240" /db_xref="UniProtKB/TrEMBL:A8XFG9" /protein_id="CAP31430.2" /translation="MFISLVVVMTLLRVGTILVLAAVLPLEEGFYVPGVAPFDFRAGD FIDVKAIKLTSSSNIMPFEYYSVPFCKPKDGDIRYKSENLGEVMRGDRIVNTPYKFSM KKNEQCASLCSNKLSKEDVELFRERIRQEYSAHMIVDNLPVATVISSGKSGDVYYDLG YRLGWIDENSKVYLNNHLQFVVKYHQHTPGLYRVVGFEVRPKSIAVTKNSDSTCSLPE DGGKHAELGNSEQTVDFSYSVTFEESDIPWASRWDVYLTTKAVDIHWFSILNSIVVVL SLSGFLSVTIVRTVRRDIAQYNRDDEEDETLEETGWKLVHGDVFRPPPHQMILVNMVG TGIQLLGMSAIVVVCAMLGMLSPASRGSLMSAAVFLFCFMGLISGYHAGRLYKTMKGR NPIRCAVQTATLFPSLILGAGFLLNFFLIGKHSSGAVPFGTMIALLIMWFCIDMPLIF LGFYFGYRKQPYTHPVRTNQIPRQVPEQPWYLRLIPSSLIAGVLPFGAMFIELFFIFN VSFEKKSNLWQSVFQAIWENQFYYLFGFLFIVSIILAISTAQISVVATYFSLCAENYR WWWRSFVISGGSSFYVMAYAVFYYNTKLTIEGFVPTVLYFGYSSLIALTFFFMTGTIG FYASHFFLTKIYAAVKID" CDS complement(join(579105..579275,579329..579526, 579570..579767,579813..580458,581662..581744, 581796..581864)) /gene="CBG12454" /locus_tag="CBG_12454" /standard_name="CBG12454" /product="Protein CBG12454" /note="contains similarity to Pfam domain PF04189 Gcd10p family contains similarity to Interpro domain IPR007316 (Eukaryotic initiation factor 3, gamma subunit)" /note="Predicted" /db_xref="GOA:A8XFH0" /db_xref="InterPro:IPR017423" /db_xref="UniProtKB/TrEMBL:A8XFH0" /protein_id="CAP31431.2" /translation="MEVESPPTTTSLIQAGEYLIVQKIDGEQSRIVRFTPKQKILIEK LKFTSDSAFGKPHGLFEVSNNQCFPMSVDRLIEELQLQEAPVATTLADSEVVLSEIVE SSDLRVVIAPSALKLEPEQKRQKLEMDAVLEMKKQGVSGQEVVAKLVEGSASFQTRTV FSQSKYIKRKAKKHSDRYIFLLNLATQISYRVLILRPTIRLLAKAYYLKDPDRLAMLR ADQLALILQMAGVHHGKNVLVFEQTLGLITSAVMERLGGKGACVHFHRGAVAQSIPCV HSMNYNESTLSTFLPVRIKCLLTGKQLPYENNRKACNEEEENDDKTKEGKCEENVEDQ DLEALARRNDRLDRERRGLEMTFEGNAHALIIGSRTVDPINVLELVYPTLAPSASIVI YSPHQNTLISCYDWLSKRQAINLVLTDQMCRVMQVLPDRTHPLMAQHVAGGHVLSGIK VVDQ" CDS join(584458..584654,585248..585338,585383..585471, 585519..585611,585659..585743,585790..585960, 586007..586296,586954..587132,587181..587322, 587371..587485) /gene="CBG12455" /locus_tag="CBG_12455" /standard_name="CBG12455" /product="Protein CBG12455" /note="contains similarity to Pfam domain PF01490 Transmembrane amino acid transporter protein contains similarity to Interpro domain IPR013057 (Amino acid transporter, transmembrane)" /note="Predicted" /db_xref="GOA:A8XFH1" /db_xref="InterPro:IPR013057" /db_xref="UniProtKB/TrEMBL:A8XFH1" /protein_id="CAP31432.1" /translation="MSTLEEQKILIELETMPFIVGPTDNEQERKQQEFDDVTTKKEEN SNGLSSVKSVISTMISRKNGISATSGLINFICGMIGPGCFSLAVSFKQAGLWGGLVLV FIVGFLSLYSMHKIVSCSQYLAKSNGDQSLDYGQMAEAAMLNSYKWTKRHAKLTKIIV NACLLAFQLGVITVFMVFAVEHVIEIWEFIGDSPPPFSKTVMILLYFVPQMLLNFIGH MKLITILCLCGNVIIFGAIILITKELMVHKWYPTWELNSVTGIEGISLAAGALIYSFE GQAMVLPLENSLKHPKDMTGASGVLSTAMNLVTVLYAFLGFFGYVTFGPKVQGSLTLN LPNSILTVSIKGLLVLKIFFGSAIQLFVIVQMLLPSLRSLISEDRKLIHRFLPYALRL GLMLISLCLALVVPNLMQIIPLVGITSGLLISLILPSFLDCIVFLPVYKKQGEMFLYY QKLIINVFLFVLGWLFLGSGLYSSIDDIINNDV" CDS complement(join(588005..588102,588151..588265)) /gene="CBG12456" /locus_tag="CBG_12456" /standard_name="CBG12456" /product="Protein CBG12456" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFH2" /protein_id="CAP31433.1" /translation="MSNYSILCIMAIVFMLSATVNSQLFGGWSQPAWGYSSQGVGVDQ FGNTFEGTPQNGIYLFCNGHGCPGRG" CDS join(591470..591472,593396..593872,593920..594375) /gene="Cbr-eif-3.E" /locus_tag="CBG_12457" /standard_name="CBG12457" /product="Protein CBR-EIF-3.E" /note="C. briggsae CBR-EIF-3.E protein; contains similarity to Pfam domain PF01399 PCI domain contains similarity to Interpro domain IPR000717 (Proteasome component (PCI) domain)" /note="Predicted" /db_xref="GOA:A8XFH3" /db_xref="InterPro:IPR000717" /db_xref="InterPro:IPR016650" /db_xref="InterPro:IPR036390" /db_xref="UniProtKB/Swiss-Prot:A8XFH3" /protein_id="CAP31434.2" /translation="MFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNY LNALYGKLASEILLQEWEHARDDLLKLRAYIDANPFDTEWELVTQRAWLMHWALFVYY NYPKGRDEIIEMFLNQQPYLNAIQVLAPHLLRYLAVAVVTSKSRQKNSLKDLVKVIDI ERHSYKDPVTDFLTCLYIKYDFDEAQEMLQKCEEVLSNDFFLTAVLGDFRESARLLIF EMFCRIHQCITIEMLARRLNMSQEEAERWIVDLIRTYRIEGAKIDSKLGQVVMGVKSV SIHEQVMENTKRLTLRAQQIALQLEKGRQDKVKAN" assembly_gap 592456..593003 /estimated_length=548 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(594933..595098,595181..595239,595299..595566, 595608..595675) /gene="Cbr-cdc-26" /locus_tag="CBG_12458" /standard_name="CBG12458" /product="Protein CBR-CDC-26" /note="C. briggsae CBR-CDC-26 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8XFH4" /protein_id="CAP31435.2" /translation="MSMLRRPLTQLELCEDDIQWLSEQLAKKETGFEDEVKYEVMDVD EDEPMDQSEPTGKKDVPGTSGEGAQFTDQGLSISSARTPVSGASVNLSTPVNPSSSNE MMALPPPVRLARAGRRQRDSRVVNGDVPLMFNAYDTPQQPAGGSNGSPTPSDSPESPN AHLYSTPINPTSSSGGPSSNTRSQRH" CDS join(595853..596401,596445..597060,597240..597568, 597618..597686) /gene="Cbr-mrps-30" /locus_tag="CBG_12459" /standard_name="CBG12459" /product="Protein CBR-MRPS-30" /note="C. briggsae CBR-MRPS-30 protein ;" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8XFH5" /db_xref="InterPro:IPR010793" /db_xref="InterPro:IPR039982" /db_xref="UniProtKB/TrEMBL:A8XFH5" /protein_id="CAP31436.1" /translation="MHGLKRTLLIRTVCRGKASTAADIPKEEVVQTSKSEEVAPKAAN ASTVYRPPYYRKPHKYHESSHILQEEFANAGDASGAGVRLFDYYKTAEMVNAMPTIKE KIDLVSPYERPWTRAERTWRRDWHPTLMATRKAWGIPPTPAHFDTLDYYKYITKTRVE NKSLDDFYHGLRPPTAELQQSFQNTLKSMEFGDGITFSEEDTQKLFGCLIDDAMGAIA HNVSRLADHRVAYDVESEAFWVRSGFMFLYDEPVIGSNKDHKRRLNNFPKFIGDDRRK LGELAFVHRDKLAAQIRSREPPALLHSLDSDDAKLPVFEKDFNIEETLYSPKVFNLWP DQQPLWQCPGYHADSGETHSYGLLSVKSLRPLRERVAHWMGWESQAELEESPEAKQMI DDGARSQAVISMFTTLCAQAHTHGFTQYTDVTRPFTSQMILSDGLNFYFAVGQLNTLA INVDCEGFVNPRTNFIQIDGPHRLFEIVDEDGNYTSSQEYVDAKNNVNRRVDSGLNEK VLERVTQMLMKQ" CDS join(597926..598047,598095..598391,598437..598655, 598704..598986,599030..599206) /gene="CBG12460" /locus_tag="CBG_12460" /standard_name="CBG12460" /product="Protein CBG12460" /note="contains similarity to Pfam domains PF00149 (Calcineurin-like phosphoesterase) , PF12850 (Calcineurin-like phosphoesterase superfamily domain) contains similarity to Interpro domains IPR024654 (Calcineurin-like phosphoesterase superfamily domain), IPR004843 (Metallophosphoesterase domain)" /note="Predicted" /db_xref="GOA:A8XFH6" /db_xref="InterPro:IPR004843" /db_xref="InterPro:IPR029052" /db_xref="InterPro:IPR033308" /db_xref="UniProtKB/TrEMBL:A8XFH6" /protein_id="CAP31437.2" /translation="MQCYKLIGPPLLLVIGLVVYNEYYIFYSAISHCNWPCEHGRCSE TSLKAFMISDTHLLGKRNGHWLDKLKREWQMYQSYQIAKWILNPEVVFFLGDLMDEGK WAEKSLFSSYANRFRQLFGDDKMVITLAGNHDIGFHYAVMPDTLDMFRKEFQRGLIDD IQIKNYRFVLINSMAMHGDGCRLCHEAEVELDRIKNRSSKTRPIVLQHFPLYRKSDAV CEKMDEQHVVDLKEKYREQWDTLSKDSTRKLISTLNPIAVFDGHTHKMCKKKWKSSQA PGYFYEYTVNSFSWRNGDVPSVLLAVMDGEDAFVNSCRLPSEAQQIKVYVVGGLSILI LAITLIIRRRSIFKRRCSYSLLMYRSPEKCE" assembly_gap 600854..602941 /estimated_length=2088 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(605835..606129,606177..606295) /gene="CBG12462" /locus_tag="CBG_12462" /standard_name="CBG12462" /product="Protein CBG12462" /note="Predicted" /db_xref="GOA:A8XFH7" /db_xref="UniProtKB/TrEMBL:A8XFH7" /protein_id="CAP31438.2" /translation="MNDDLIIPPPLQWNLQAIATCAAIVTVMVVNVIGLVFTIFWCLR TKDDGIETGGDGATANQFIEPNIRMKLKVPKVATCSKDVYEVRVPSNGNHFNACHETT IVVARNKRRRTYSLPLETRPRTQSTSSHPLAMAEV" CDS join(606647..606724,606798..606851,606897..606996, 607046..607218,607264..607737) /gene="CBG12463" /locus_tag="CBG_12463" /standard_name="CBG12463" /product="Protein CBG12463" /note="contains similarity to Pfam domain PF00498 FHA domain contains similarity to Interpro domain IPR000253 (Forkhead-associated (FHA) domain)" /note="Predicted" /db_xref="GOA:A8XFH8" /db_xref="InterPro:IPR000253" /db_xref="InterPro:IPR008984" /db_xref="UniProtKB/TrEMBL:A8XFH8" /protein_id="CAP31439.2" /translation="MEEADEKSKFKIPTWAVKPPDGAHLDKLLIDDKKAYYFGRNNKQ VDFAVEHASCSRVHALIIYHGLLQRFALVDMGSSHGTFLGSVRLRPLEVFFMDPGSQF HLGASTRKYAVRLKTEHIVEDDPKVIASEEQLDHQTSYNTAQNRRIPQLPISVEEARR KKRPRGNVAFLEEEEVINPEDVDPSVGRFRNLVTTAIISTNPNKRPGDPKRSEPPRKV VRPGRDLIAAPLSSTFGPMALNSAPDLELYGKTLPEPGQHQFVTAQNEEELEDHHKKR YAKEAWPGRKPGAGIF" CDS complement(join(607947..608200,608248..608389, 608434..608505,608550..608846)) /gene="CBG12464" /locus_tag="CBG_12464" /standard_name="CBG12464" /product="Protein CBG12464" /note="contains similarity to Interpro domain IPR001507 (Zona pellucida sperm-binding protein)" /note="Predicted" /db_xref="InterPro:IPR001507" /db_xref="UniProtKB/TrEMBL:A8XFH9" /protein_id="CAP31440.1" /translation="MHRYNNRSSLSHRIQLSRFFIYDLQSPNRKYVPGRVFVLGHSAD KECVSREVGRRTTSITVPRDKCGVETVQHGKGAGYTSSVNIVISFHDKFLTKVDRAYN ITCLYAPTGDVVSYALTVQPSLLKDIQVLADQPNCEYEVFDVRTRRPADVVHVNAPLE HVWTCDGANLDLFCMRVHDCVINEGKNKRRSKIIDSEGCSLDTTRLPNLRYDNNKLSA RVMSKAFRFGDDVAVEFECNVRLDLKNGTSCPRPRC" CDS complement(join(609839..609916,610020..610121, 610280..610396,610621..610923,610971..611381, 611384..611692,611740..612048)) /gene="CBG12465" /locus_tag="CBG_12465" /standard_name="CBG12465" /product="Protein CBG12465" /note="contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase) , PF00271 (Helicase conserved C-terminal domain) , PF04851 (Type III restriction enzyme, res subunit) contains similarity to Interpro domains IPR011545 (DNA/RNA helicase, DEAD/DEAH box type, N-terminal), IPR006935 (Helicase/UvrB domain), IPR000629 (RNA helicase, ATP-dependent, DEAD-box, conserved site), IPR014001 (DEAD-like helicase), IPR001650 (Helicase, C-terminal)" /note="Predicted" /db_xref="GOA:A8XFI0" /db_xref="InterPro:IPR000629" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014014" /db_xref="InterPro:IPR025313" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8XFI0" /protein_id="CAP31441.1" /translation="MGIDVKKKVLKRKLKQMKDGHEKKKAKEVVEEQPMEDDDGEKVE DEEQQAEENTGTKVSEFLTKTTFASLDGKVNSNLLKSVQRLGFTTLTEIQAKTIDPLL EGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLT ELLEGSNLTFGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNDNFLVRNLKCLI IDEADRILDIGFEIEMQQVLRHLPKQRQSMLFSATHSPKVDELVKLALHSNPVRVSVN EKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKKNKTKKVMVFFSSCNSVKFHHELLNY IDVPCMSIHGKQKQQKRTSTFFTFCQAESGILLCTDVAARGLDIPAVDWIVQYDPPDE PREYIHRVGRTARGTNGSGKALLVLRPEELGFLRYLKAAKVTLNEFEFSWNKVANIQT QLESLISKNYYLNKSAKEAYKCYLRAYDSHSLKDIFDVTTMDLTAVSKSFGFSVPPFV DLPISNKPKVEIRSKLSGAGYRKKKQSFSFKTKK" CDS complement(join(612197..612337,612379..612528, 612575..612751)) /gene="CBG12466" /locus_tag="CBG_12466" /standard_name="CBG12466" /product="Protein CBG12466" /note="contains similarity to Interpro domains IPR023572 (Archease domain), IPR002804 (Archease)" /note="Predicted" /db_xref="GOA:Q61DI9" /db_xref="InterPro:IPR002804" /db_xref="InterPro:IPR023572" /db_xref="InterPro:IPR036820" /db_xref="UniProtKB/Swiss-Prot:Q61DI9" /protein_id="CAP31442.1" /translation="MPSTSMIEDRGEIERRRFEYLDHPADIQLHSWGTTIERAFEACL VSMFGYMTDLEKVEEQYEFYWKVSGDSMDGLLFQFLDEALNSFHAEPCFVAKRVEIMR FDKEKLEIEFRGWGESFDTSKHETEADIKSPTYSNMQIIEKSDRCDVYVIVDI" CONTIG join(CAAC03000125.1:1..9987,gap(10),CAAC03000126.1:1..5102,gap(81), CAAC03000127.1:1..4028,gap(359),CAAC03000128.1:1..66281,gap(1080), CAAC03000129.1:1..86876,gap(775),CAAC03000130.1:1..22226,gap(1738), CAAC03000131.1:1..49743,gap(691),CAAC03000132.1:1..11636,gap(472), CAAC03000133.1:1..867,gap(626),CAAC03000134.1:1..9813, AC089995.1:4463..5005,CAAC03000135.1:406..10374, AC089995.1:14975..15505,CAAC03000136.1:350..9813, AC089995.1:24971..25505,CAAC03000137.1:119..31582, AC089995.1:56973..58505,CAAC03000138.1:1389..16358, AC089995.1:73476..74005,CAAC03000139.1:132..1101, AC089995.1:74976..75505,CAAC03000140.1:101..14190,gap(10), CAAC03000141.1:1..33886,gap(1877),CAAC03000142.1:1..41972,gap(247), CAAC03000143.1:1..7011,gap(359),CAAC03000144.1:1..8688,gap(202), CAAC03000145.1:1..2455,gap(1126),CAAC03000146.1:1..63372, AC084469.1:8977..9505,CAAC03000147.1:208..15483,gap(10), CAAC03002567.1:3816..19169,gap(10),CAAC03002568.1:1..9505, AC084500.1:9464..11505,CAAC03002569.1:815..2278, AC084500.1:12970..13505,CAAC03002570.1:316..5831,gap(295), CAAC03002571.1:1..4303,gap(222),CAAC03002572.1:1..18668,gap(548), CAAC03002573.1:1..7850,gap(2088),CAAC03002574.1:1..12042) //