LOCUS HE600906 1359970 bp DNA linear CON 17-SEP-2015 DEFINITION Caenorhabditis briggsae AF16 supercontig from assembly CB4, cb25.fpc0071c2. ACCESSION HE600906 CAAC02000457 VERSION HE600906.1 DBLINK BioProject:PRJNA10731 BioSample:SAMEA3138181 KEYWORDS . SOURCE Caenorhabditis briggsae ORGANISM Caenorhabditis briggsae Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1359970) AUTHORS Howe K.L. CONSRTM WormBase Consortium JOURNAL Submitted (03-OCT-2011) to the INSDC. WormBase group, European Bioinformatics Institute, Cambridge, CB10 1SA, UNITED KINGDOM. REFERENCE 2 (bases 1 to 1359970) AUTHORS Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P., Fitch D.H., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W., Hillier L.W., Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K., Durbin R., Waterston R.H. TITLE The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics JOURNAL PLoS Biol. 1(2), E45-E45(2003). PUBMED 14624247 REFERENCE 3 (bases 1 to 1359970) AUTHORS Ross J.A., Koboldt D.C., Staisch J.E., Chamberlin H.M., Gupta B.P., Miller R.D., Baird S.E., Haag E.S. TITLE Caenorhabditis briggsae recombinant inbred line genotypes reveal inter-strain incompatibility and the evolution of recombination JOURNAL PloS Genet. 7(7), E1002174-E1002174(2011). COMMENT Details of C.briggsae assembly version CB4: To improve upon the C. briggsae nuclear genome assembly CB3, 167 AF16/HK104 advanced-intercross recombinant inbred lines were successfully genotyped at 1,032 single nucleotide polymorphism (SNP) markers. The resulting data were used to estimate high-density genetic maps. Sequences were assembled by combining the physical and genetic positions of the SNPs to inform the process of ordering and orienting the cb25 supercontigs into chromosome assemblies. 37 of the cb25 fingerprint contigs were split into 100 supercontigs to resolve discrepancies between the physical and genetic orders of SNPs. 638 sequence supercontigs comprise the CB4 assembly. The total nuclear genome content decreased from cb25 to cb4 because of the removal of three supercontigs containing mitochondrial genome sequence (totaling 20.1 kbp). Assembly_name: CB4 Assembly_program: Phusion Seq_technoloy: capillary (whole-genome-shotgun) Seq_coverage: 10x Annotation details: Coding seqences below are the result of integration and manual review of the following data : computer analysis using the programs Genefinder (version 980506; P. Green, unpublished data), FGENESH (Salamov and Solovyev 2000), TWINSCAN (Korf et al. 2001), and the Ensembl annotation pipeline (Clamp et al. 2003); similarity to other proteins from BlastX analyses (http://blast.wustl.edu); sequence conservation with C. elegans using Jim Kent's WABA alignment program (Genome Research 10:1115-1125, 2000); individual C. briggsae GenBank submissions; and personal communications with C. briggsae researchers. tRNAs are predicted using the program tRNAscan-SE (Lowe, T.M. and Eddy, S.R., 1997, Nucl. Acids. Res., 25, 955-964). FEATURES Location/Qualifiers source 1..1359970 /organism="Caenorhabditis briggsae" /strain="AF16" /mol_type="genomic DNA" /note="supercontig cb25.fpc0071c2" /db_xref="taxon:6238" CDS join(1726..1791,2013..2465) /gene="Cbr-skr-1" /locus_tag="CBG_03758" /standard_name="CBG03758" /product="Protein CBR-SKR-1" /note="C. briggsae CBR-SKR-1 protein; contains similarity to Pfam domain PF03931 Skp1 family, tetramerisation domain contains similarity to Interpro domains IPR001232 (SKP1 component), IPR016897 (E3 ubiquitin ligase, SCF complex, Skp subunit), IPR016073 (SKP1 component, POZ)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WWN0" /db_xref="InterPro:IPR001232" /db_xref="InterPro:IPR011333" /db_xref="InterPro:IPR016072" /db_xref="InterPro:IPR016073" /db_xref="InterPro:IPR016897" /db_xref="InterPro:IPR036296" /db_xref="UniProtKB/TrEMBL:A8WWN0" /protein_id="CAP24597.1" /translation="MTEAKTEQRMIKISSSDNETFTVPREVIRLSTTINTLLQDLGLD DDDSNGVTDPIPVQNVSSPILKKVISWCQYHYQDTAPADDQDNREKRTDDIASWDVEF LKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKSPEEIRRTFNIKNDFTPEEE EQIRKENAWCED" CDS complement(join(2783..3000,3045..3192,3837..3902)) /gene="Cbr-calm-1" /locus_tag="CBG_03759" /standard_name="CBG03759" /product="Protein CBR-CALM-1" /note="C. briggsae CBR-CALM-1 protein; contains similarity to Pfam domain PF10591 Secreted protein acidic and rich in cysteine Ca binding region contains similarity to Interpro domains IPR002048 (Calcium-binding EF-hand), IPR019577 (SPARC/Testican, calcium-binding domain)" /note="Predicted" /db_xref="GOA:A8WWN1" /db_xref="InterPro:IPR002048" /db_xref="InterPro:IPR011992" /db_xref="UniProtKB/TrEMBL:A8WWN1" /protein_id="CAP24598.1" /translation="MTEAKTEQRMIKISSSDNETFTENPFKRRICEVFSEDGRGNLSF DDFLDMFSVFSEMAPLQLKLKYAFRIYDYDGDELLGHDDLSKMIRSLTRDELSDVEVE FIIERIIEEADLDGDSSINFAEFEHVVSRSPDFIRTFHIRI" assembly_gap 3735..3801 /estimated_length=67 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5007..5085 /estimated_length=79 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(5375..5484,5530..5629) /gene="CBG03760" /locus_tag="CBG_03760" /standard_name="CBG03760" /product="Protein CBG03760" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WWN2" /protein_id="CAP24599.2" /translation="MFITIRIQNFRFPVLEPFWAAEHTANLWTKLFPSYATFTAAQNR PLPRVGNTEQYDFDAISLQFHLDPN" CDS complement(join(5883..5979,6024..6142,6187..6340, 6384..6469,6516..6752,7289..7354,7401..7545,7589..8169, 8336..8536,8585..8767,8816..8896)) /gene="CBG03761" /locus_tag="CBG_03761" /standard_name="CBG03761" /product="Protein CBG03761" /note="contains similarity to Pfam domains PF00782 (Dual specificity phosphatase, catalytic domain) , PF01331 (mRNA capping enzyme, catalytic domain) , PF03919 (mRNA capping enzyme, C-terminal domain) , PF01068 (ATP dependent DNA ligase domain) contains similarity to Interpro domains IPR012310 (DNA ligase, ATP-dependent, central), IPR017074 (mRNA capping enzyme, bifunctional), IPR016130 (Protein-tyrosine phosphatase, active site), IPR013846 (mRNA capping enzyme, C-terminal), IPR001339 (mRNA capping enzyme), IPR000340 (Dual specificity phosphatase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WWN3" /db_xref="InterPro:IPR000340" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR001339" /db_xref="InterPro:IPR012340" /db_xref="InterPro:IPR013846" /db_xref="InterPro:IPR016130" /db_xref="InterPro:IPR017074" /db_xref="InterPro:IPR029021" /db_xref="UniProtKB/TrEMBL:A8WWN3" /protein_id="CAP24600.2" /translation="MAPKGPTPDKARLGLPDRWLHCPKTGTIVNDLFFPFKTPLCKMY DQQIPERKWKFSPADVFSSPFLNGRRIGLWIDLTNTDRYYFPDEVTEKSCRYVKMAMA GRGMSPTKEETDTFIKIVTEFHEKNADLLVGLHCTHGFNRTGFLIAAYLFQVNEYGLD AAIREFAENRQGGIYKQDYIDDLYTRYEPLEDERVMAPEKPDWEREHHYTDGSNQNNN GTASSSQANFANGFPLLISYFLSKTYQYSGNGNQSASSSNGKNNGAGVKQFMDGLVKG ARHVEDPGKKSILQAKVLIALNEIHKMPFQIQELCKWSKQGFPGLQPVSLSRDNINCF EKEPYMVSWKADGMRYIVYINDGEVYAFDRDNEVFEIDNLDFVNNDGSPLKGTVVDTE VIIDKVEEHGILRDHPRMLIYDVMRIGGFNVMKEPFSKRFKIISTEIIDKRDAGFRSG KLRRERQTMSVRRKDFYVLETTWKLFERKFVKNVGHEIDGLIFQPTDRQYETGRCDKV LKWKPPSHNSVDFLLKITKVCREGMLPEWTGHLFVQNQREPFGSMKATASLRQYDGKI IECTLKVNERGQATEWVFMRERTDKSLPNGLRTAQNVLDTMLRPVTEEYLLGSINHAL RVLDARKREHLSHEGHSDPKRPRVQ" CDS complement(join(10840..11040,11091..11141)) /gene="CBG03762" /locus_tag="CBG_03762" /standard_name="CBG03762" /product="Protein CBG03762" /note="Predicted" /db_xref="UniProtKB/TrEMBL:G2J6F6" /protein_id="CAP24601.2" /translation="MELWEAALEDIENLEGMANEAKANFKKQKDDMKAEKKTGPKKSK DEDKKDEKVDDGMDDQKNPEEEKKTSNEKKDDNDKKKDI" CDS join(11320..12496,12540..12657,12704..13586,13633..14788, 14835..15430,15478..15885) /gene="Cbr-npp-14" /locus_tag="CBG_03763" /standard_name="CBG03763" /product="Protein CBR-NPP-14" /note="C. briggsae CBR-NPP-14 protein ;" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WWN6" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR026054" /db_xref="UniProtKB/TrEMBL:A8WWN6" /protein_id="CAP24602.2" /translation="MATDEVAQDVSQVTDFYYHTCRKFRIFSEKVDTVPAGKTIRNRL ATSSQLGVTFALVGTNQVNIPKIRTVIYNSCFQLLCFPTKSLLSYKVTRENMIVEVTD LSAKSIGLHGVEEINDMGVNSDGTLLAVLQTRNNDVSVDVFDIKSLCSAVSSVPFKPI CSTRVGTEQVNQGSCFEWNPAFPDTFAASSTDRSIMVAKIDVKNPSSQKLIGIGKLGA ITTAISWSPKGKQLTIGDSLGKIVQLKPELDVVRSQAGPKHTPAYGKVTGLCWLATTE WLVSFERGTDHDAYLMRCKKDKPTEWMQYHELSYSSSKWTFPAFLFPASQLLVDWNVV IVGNSKTSEIATVGKRDEWQTWVPVEGEGIYLPTTASGKDTVPIGLTIDRSMAEEVSL EQDGSRKHRPSPLVLCLTNDGVLTVHHVISTVTAHKLCQIESQSIGVTGLAKLQLTQA VSTSSNASSASPAQIPTAQPSTIFEQKPKLESVAPTPKSNIFGTPLSTPKPADALLGS TPTTALGSTPTASMLFGGSKISPPANTAAPEATPTTPAPQSKLVPVTTLTPASSTAED LKALENKNAEALAAKKKILLDRVSKINLMMTSTKDSIMKMSFAVGKMKNCVMECAEVV QASLEDSKEVMDELRNLIVLIERMSDRTQHTVKEMDFEIDEKMELVAGVDDGERVLEK LRSMSETEKMMRFNKLETTADLLNGKYEECCEKIKKLRTNLAEKESLRKQAVLPPFRY NSNLNQLRHGAESEIALKVMRNVTKIILDTRERIQRTELDFVRFKREISKGPDMKKNA NATLAQPSEICIPAENAPQRGKMSDSEIVKARQLLVSRVQKKGPVKTRNVIIESYKKA DDPKTKKLEELDTSNLSNAILKLSMTPRRVIPTSSLFTTADVTPPRKADAATQADEPP VVKTVVVTVESPAKPVTTAPVTSLPKTTKTTAVPAIATPKVATMKEEVKDQKTPAPLS TSSSIFSGSLFGSTAPKAPPVSAGTSPLPTAGSSSLLNSSLNISPKEEKEGITEANKN EETKLPNVKKVEEKQQESDDVKVPTGKVETPKEEPVVKQEQPKPVEPVNVTPKVEAPA PTVTTSPPATEPKTDLTPKAPSFSFNSTPKSITSTPSIFGGEFGTQSPASTNSSSIFG GAATATPVASGNTSSIFGGGAKTTNSPFGSFGKGSAQPAQAQNLTPATSSVSFSFNTG SSAPPAKSTGFGAFGGGAPAQTSSAFGSSVTAPTVPNVDDGMEDDSMVNGGGPGGFMS GLGSSGNAISSNTGNNPFAPKASTGTASNNSWLFGGGNAQQPSQQQQKPSFSFSTGGA SQQPATSTTSSSVFGGAPKFGSQPVFGAKPFGGGAAPASGLSKNASIFGGAVSSTPSA PAGGGFAQFATGQQTSSLFGGGAAAAAPQTGSSIFGGGAKTTAPASSIFGGGASTNAN KNTSFTSWR" CDS join(16196..16263,16310..16397,16448..16753) /gene="Cbr-lab-1" /locus_tag="CBG_03764" /standard_name="CBG03764" /product="Protein CBR-LAB-1" /note="C. briggsae CBR-LAB-1 protein ;" /note="Predicted" /db_xref="GOA:A8WWN7" /db_xref="UniProtKB/TrEMBL:A8WWN7" /protein_id="CAP24603.1" /translation="MVSNSRRSDPRPLWILKIHKRLSLHEFKKEARYSEADIKWVLKG PPTKTVYKVTVETMENCGTPESEQQIWVTEEMARATGEMLERFEEEEEAEETTLGDKS HEDINETTESIEEDYAELRESEDVNPYDTEVESHETTFDFSSIDDDKETSS" CDS complement(join(19572..19707,19754..20052,20283..20595, 21756..21921,21973..22073,22174..22256)) /gene="CBG03766" /locus_tag="CBG_03766" /standard_name="CBG03766" /product="Protein CBG03766" /note="contains similarity to Pfam domain PF07735 F-box associated contains similarity to Interpro domain IPR012885 (F-box associated domain, type 2)" /note="Predicted" /db_xref="InterPro:IPR012885" /db_xref="UniProtKB/TrEMBL:A8WWN8" /protein_id="CAP24604.1" /translation="MEEFTSLLDMLSPDMADGLLKQMNPVDIIELSNVSPQWEHVVKS NQTEIKEVHVNLEGMEYHWREKTCAILGIKPVQRSFVHFLFYYRKEEELKKMLEDPED PTFVEKVFDDETFVCQVRQTNIQVFTPNPKLALFNVIDHMLRLFTGTIHMVNIADCLP VYDDIIIPILKKKQVNMCKKIMFPFSVEPVSNALASRVMAIPNLHAMECLFKFPDDFR SNKKITIPHVRIGSSAWMTRHYFLNMDCENIVLTDSNFDGKDMNAFVKNWLEGDNKKL RRMQLTWCNPVDWKSKFQNHIMDGIKGNKWKPKDKTRSRYFKIRKGQIDCSSGIDITR SDGAFATIMRDNYSFSFVVWNYPETTTSSSS" assembly_gap 25849..25858 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(26592..26861,26909..27026,27075..27148,27495..27590, 27637..27917,27964..28042) /gene="Cbr-dhs-4" /locus_tag="CBG_03768" /standard_name="CBG03768" /product="Protein CBR-DHS-4" /note="C. briggsae CBR-DHS-4 protein; contains similarity to Pfam domains PF08659 (KR domain) , PF00106 (short chain dehydrogenase) contains similarity to Interpro domains IPR013968 (Polyketide synthase, KR), IPR003560 (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase), IPR002347 (Glucose/ribitol dehydrogenase), IPR002198 (Short-chain dehydrogenase/reductase SDR)" /note="Predicted" /db_xref="GOA:A8WWP0" /db_xref="InterPro:IPR002347" /db_xref="InterPro:IPR036291" /db_xref="UniProtKB/TrEMBL:A8WWP0" /protein_id="CAP24605.1" /translation="MFDLILEALLLFIDLIRFHLISFYKYVLPYSLLPKKEFHGKRIL ITGAGSGLGKLLSRKFAAQGAELILWDINLKSVDDLKDEFKSNGVKAHSYEVNLCDPN KISTVGQQVLRDIGKVDILVNNAGVATAKMILDSNVKDIETSFDVNVKAHFYTVQQFL PPMLEEDNGHVVTIASVAGKMGSAGLADYTSTKHAAVGFHDSLVAEIMASGKEGVKTT LVCPYYVHTSMFDATGATTRFPSIFPILDTEYVVQKIYEAIETEQEYLVTPKSFYWIL PGTQILPYRAQKAIGQFLGLIQSLDRFHN" assembly_gap 28752..29178 /estimated_length=427 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(29849..30325,30371..30894,30947..31118, 31162..31304,31353..31696,31738..32093,32136..32282, 32327..32443)) /gene="Cbr-pgl-1" /locus_tag="CBG_03769" /standard_name="CBG03769" /product="Protein CBR-PGL-1" /note="C. briggsae CBR-PGL-1 protein; contains similarity to Interpro domains IPR001917 (Aminotransferase, class-II, pyridoxal-phosphate binding site), IPR006162 (Phosphopantetheine attachment site)" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WWP1" /protein_id="CAP24606.1" /translation="MELNKREIVEVGGIKSCFFPNLALYASKNSEALLNDPKSTNLFA ANVFGALKDQPNENDITEMILPQDANADVLAAGMDACLLLGKQYHQLFESANERLSVL GRTHDLASIKDDEKKLTVLARRTKLKKTEGAKILQILIEAIAEEDVFEKFMKIAELCS HDLDFDAYVLIKALGLECEEAVEEFKIIRENVLAVLKECNPLLSELLVDGPKGAPVNE FTQLLLGSLSEESLENLVTRISEQFEQEQKDDSDKSLVARYHLGFQLNFLVVRTLAAD QRELAKKIQSKIPADIRSEIFPGLQKSVFKSSVFLGHHIVQVFLGSKKSFPEWPHTGL SQDFDCIWRRRAIAELFKKYSVSIIENVFDEAVPLITDAGVNNSDMLEKVINALRFAS WIVECYGTETESKSVKELAFLDTSSRKLLMESFNKFSQGSDSKDHIMRIVKSLELAGS IVTATPTDSQPSVSHSTKPDLSYTRETILDAQLTKAFNVKADVLRGLNNSNSVGLLAE AKDSTSLLEIPVDETDSTRVLNTTKDIGNGVYVKAQDPIKEKPMDLPVIAHPENLAQV DSSTSNETVSLLSTDARESTDGWEQSPTKSVALPVDAIVEEEEYPTMREEEELSAIQN QQHSSTEKIETLKSPESRVKTSWGAGDVTPIPLATPTNEYKVSGFGGATLAKGFGTFG SSGGGFGGGGGGYGGGRGGGYGDRGGRGGGYGDRGSRGGGYGGDRGGRGGGYSGERGG YGSQRGSYGGPRGGFRGGV" CDS join(33420..33491,33579..33824,33872..34121,34187..34252, 34301..34434,34480..34881,34932..35145,35190..35431, 35476..35667) /gene="Cbr-ikb-1" /locus_tag="CBG_03770" /standard_name="CBG03770" /product="Protein CBR-IKB-1" /note="C. briggsae CBR-IKB-1 protein; contains similarity to Pfam domains PF00531 (Death domain) , PF12796 (Ankyrin repeats (3 copies)) (3), PF00023 (Ankyrin repeat) (2)contains similarity to Interpro domains IPR002110 (Ankyrin repeat), IPR000488 (Death), IPR020683 (Ankyrin repeat-containing domain)" /note="Predicted" /db_xref="GOA:A8WWP2" /db_xref="InterPro:IPR000488" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR011029" /db_xref="InterPro:IPR020683" /db_xref="InterPro:IPR036770" /db_xref="UniProtKB/TrEMBL:A8WWP2" /protein_id="CAP24607.2" /translation="MPSADENKTCYENNDIQKSKSDTEINSTTNKESSNQYHRIFIEE FSSCEGFAGDRVWATYSGAGKIADTKPKINKLFIGDITEPLNIHFLGENLEESAVDVV EKHSLVTFTVPVLPIEAELELEIRFSTSDDNVTTIPFKYLPRARLQHSTTQDVSLFDR LLEFATTEIQFRFFSHSFHKLRNMMSKEIPKNGQSFSLKLLLSVLPNSLKEEVINVQN NHGLTSLHCAIRAGDPDAVHYLMNHGAKINISDHHGNTVLHYLGDAYNESIFKEVLEP TRGQRFDINQLNSEGFAPIHVAVRRLKLSLIEMLLEAGALIDFLDTEKKRNALMHAIE MNDFETIQLLVERGSNTNIEDALGETSLSLAVKNVNYPVIGLLLDNGADPNRQNCKGV CLADNEDSVVQNIINGDRPELPKKEGFNAPNDLAVSRSPLFGRSHPDQAPTEDSLRNR LVKRSREAIMNDAETLLEETDSITPRVTRVSISESDDEQPGPSTSTTRSQRRRTEWER NPKLSDSVCNLDYLTRIRVSKIFDDQCKWQTLAQQLDCDHMIELISICSAGDDSSPTM ILLDQFEQLQDSSISRLRDGMSRMNEESAVKLIDSRYVY" CDS join(36326..36430,36481..36675,36741..36848) /gene="Cbr-rpl-14" /locus_tag="CBG_03771" /standard_name="CBG03771" /product="Protein CBR-RPL-14" /note="C. briggsae CBR-RPL-14 protein; contains similarity to Pfam domain PF01929 Ribosomal protein L14 contains similarity to Interpro domain IPR002784 (Ribosomal protein L14)" /note="Predicted" /db_xref="GOA:A8WWP3" /db_xref="InterPro:IPR002784" /db_xref="InterPro:IPR008991" /db_xref="InterPro:IPR014722" /db_xref="InterPro:IPR039660" /db_xref="InterPro:IPR041985" /db_xref="UniProtKB/TrEMBL:A8WWP3" /protein_id="CAP24608.1" /translation="MVFNRVVQIGRVVFIASGNDQGKLATVVNVIDGNRVQIDGPSSG VARTVRNLKDLHLTKFVVKIRVGQRSKGVQTAFDAAKVAENFQKTQWAKKIAQRAIRA KLTDFERYKLMKAKQMRNRIVRVELAKLKKAQK" CDS complement(join(36965..37099,37226..37351)) /gene="CBG25225" /locus_tag="CBG_25225" /standard_name="CBG25225" /product="Protein CBG25225" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFJ5" /protein_id="CAR98675.1" /translation="MNLTLNWYILVLLLCLPVSVNTIECLNYRVAEGQPILKAERNVD VNIPENARNTEMIVSYEQTHKEWKKTFVAVMGISRTKKHTSQ" CDS complement(join(42444..42651,42706..43064,43611..43705, 43755..43911)) /gene="CBG03773" /locus_tag="CBG_03773" /standard_name="CBG03773" /product="Protein CBG03773" /note="contains similarity to Pfam domain PF00782 Dual specificity phosphatase, catalytic domain contains similarity to Interpro domains IPR020422 (Dual specificity phosphatase, subgroup, catalytic domain), IPR016130 (Protein-tyrosine phosphatase, active site), IPR024950 (Dual specificity phosphatase), IPR000340 (Dual specificity phosphatase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WWP5" /db_xref="InterPro:IPR000340" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR016130" /db_xref="InterPro:IPR020422" /db_xref="InterPro:IPR029021" /db_xref="UniProtKB/TrEMBL:A8WWP5" /protein_id="CAP24609.1" /translation="MSRNVGVLGQMSEINDHLYLSGAGVLKPEKIKQRKINMIVNATT EEPSTYMQGVDTMKIRIEDHPYARLSEHFDVVADKIRNVKERGGKTLVHCMAGVSRSA SLVMIYLVKHEHMTLRQAYHYVKAARPIIRPNIGFWKQMVDYEKRLRGTASVKMVQTP ECDMPIPDVYADDLRRMQINREIARHSAPSSQSSTTKQRAFSASTYRPSVPSASSLAT SSLRRAYSPSSLPPSSLALTTSYSLFSPAPTRKPRQSLFSMYSTSPRHNFFSAF" CDS complement(54361..54672) /gene="CBG03774" /locus_tag="CBG_03774" /standard_name="CBG03774" /product="Protein CBG03774" /note="contains similarity to Pfam domains PF02969 (TATA box binding protein associated factor (TAF)) , PF00808 (Histone-like transcription factor (CBF/NF-Y) and archaeal histone) , PF00125 (Core histone H2A/H2B/H3/H4) contains similarity to Interpro domains IPR019809 (Histone H4, conserved site), IPR004823 (TATA box binding protein associated factor (TAF)), IPR007125 (Histone core), IPR003958 (Transcription factor CBF/NF-Y/archaeal histone), IPR001951 (Histone H4)" /note="Predicted" /db_xref="GOA:G2J6C3" /db_xref="InterPro:IPR001951" /db_xref="InterPro:IPR009072" /db_xref="InterPro:IPR019809" /db_xref="InterPro:IPR035425" /db_xref="UniProtKB/TrEMBL:G2J6C3" /protein_id="CAP24610.1" /translation="MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV KRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFG G" CDS 54947..55357 /gene="CBG03775" /locus_tag="CBG_03775" /standard_name="CBG03775" /product="Protein CBG03775" /note="contains similarity to Pfam domain PF00125 Core histone H2A/H2B/H3/H4 contains similarity to Interpro domains IPR000164 (Histone H3), IPR007125 (Histone core)" /note="Predicted" /db_xref="GOA:G2J6F9" /db_xref="InterPro:IPR000164" /db_xref="InterPro:IPR007125" /db_xref="InterPro:IPR009072" /db_xref="UniProtKB/TrEMBL:G2J6F9" /protein_id="CAP24611.1" /translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPAAGGVKKPHRYRP GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQESAEAYLV GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA" CDS complement(57498..57881) /gene="CBG03776" /locus_tag="CBG_03776" /standard_name="CBG03776" /product="Protein CBG03776" /note="contains similarity to Pfam domain PF00125 Core histone H2A/H2B/H3/H4 contains similarity to Interpro domains IPR007125 (Histone core), IPR002119 (Histone H2A)" /note="Predicted" /db_xref="GOA:A8WWP8" /db_xref="InterPro:IPR002119" /db_xref="InterPro:IPR007125" /db_xref="InterPro:IPR009072" /db_xref="InterPro:IPR032454" /db_xref="InterPro:IPR032458" /db_xref="UniProtKB/TrEMBL:A8WWP8" /protein_id="CAP24612.1" /translation="MSGRGKGGKAKTGGKAKSRSSRAGLQFPVGRLHRILRKGNYAQR VGAGAPVYLAADLEYLAAEALELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGV TIAQGGVLPNIQAVLLPKKTGGDKE" CDS join(58148..58515,60064..60438,60485..61439,61485..61615, 61660..62362,62406..62597,62825..62860) /gene="Cbr-hpo-24" /locus_tag="CBG_03777" /standard_name="CBG03777" /product="Protein CBR-HPO-24" /note="C. briggsae CBR-HPO-24 protein; contains similarity to Pfam domains PF02170 (PAZ domain) , PF08699 (Domain of unknown function (DUF1785)) , PF02171 (Piwi domain) , PF00808 (Histone-like transcription factor (CBF/NF-Y) and archaeal histone) , PF00125 (Core histone H2A/H2B/H3/H4) contains similarity to Interpro domains IPR014811 (Domain of unknown function DUF1785), IPR003165 (Stem cell self-renewal protein Piwi), IPR003100 (Argonaute/Dicer protein, PAZ), IPR000558 (Histone H2B), IPR007125 (Histone core), IPR003958 (Transcription factor CBF/NF-Y/archaeal histone)" /note="Predicted" /db_xref="GOA:A8WWP9" /db_xref="InterPro:IPR000558" /db_xref="InterPro:IPR003100" /db_xref="InterPro:IPR003165" /db_xref="InterPro:IPR007125" /db_xref="InterPro:IPR009072" /db_xref="InterPro:IPR012337" /db_xref="InterPro:IPR014811" /db_xref="InterPro:IPR032472" /db_xref="InterPro:IPR032473" /db_xref="InterPro:IPR032474" /db_xref="InterPro:IPR036085" /db_xref="InterPro:IPR036397" /db_xref="UniProtKB/TrEMBL:A8WWP9" /protein_id="CAP24613.1" /translation="MAPPKPSAKGAKKAAKTVTKPKDGKKRRAHRKESYSVYIYRVLK QVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPG ELAKHAVSEGTKAVTKYTSSKEQFQLTRRPVPSSAGRHISVFANHFQISCNGSIVFQY HILINPDVLSRNLNRIIVNTLLEQAPELLESNLVYDGLSTVYTTTPIDVERTNQMLIT VKGIKFTKDSPNQFSIFFTCVDRFSLDTKISYNKHDTYEKLRMIHAIDTILRQTSSAR FHTVLQSFFSITPHTKIGPSHGLGWGTVNLGLGREVCYGFYQNVVETFDKLTMNIDVA TTTFYRPIALAEFLAEVLEVPLATVTDGRSLSEVQIKKFNREITGLKVETRHCHTPRR FRIARCTWKPMKSLMLNIDNDKEASTSISMLDYFKTRYNIDLKYPHLPCVEAGRTREC ILPLELCYIVSGQRCIKKLNEQQIANLIRATSRNATERKNAVLNLHERIEVGKDHYAS EFGLRVQNQMMKLDGRILPAPRLIYCYPNSKRQDCVTTPNNGTWDMRGKNFYSGVEIK NWAVVCFAEPAIVPSNNLQMFIGSLEKVAREIGMPFVNEYCFFRYVPAEQATNSLEFL QEQFPDLQLVICIVSGKSTVYGDLKRKGDLLGLTTQCIRTNNVARVSPHTLSNLCMKI NSKLGGVNVVLSAPPPSTATTPTLFIGCHLSRNSVASSSESSSSLNYSDTSIACLVGS MDGHPTRFAPIFRLQPRNANTIIDMSEMMKEAILNFRKTTGFKPHKIVIYRSGVEGDS IDEILQAELRAIRDACTMIESGFQPGITFIALDVAHHTRLFAANERDQIGHSRNVPAG TLVETGITVNNHFEFYLVSHAGIQGTSRPTKYVVMWDDNNIPSYEIHEMTYQDKSLSE GMLFT" assembly_gap 58794..58958 /estimated_length=165 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(63525..63622,64145..64501,64552..64944, 64991..65063,69856..70065,70107..70286,70708..70842)) /gene="Cbr-cfi-1" /locus_tag="CBG_03778" /standard_name="CBG03778" /product="Protein CBR-CFI-1" /note="C. briggsae CBR-CFI-1 protein; contains similarity to Pfam domain PF01388 ARID/BRIGHT DNA binding domain contains similarity to Interpro domain IPR001606 (ARID/BRIGHT DNA-binding domain)" /note="Predicted" /db_xref="GOA:A8WWQ1" /db_xref="InterPro:IPR001606" /db_xref="InterPro:IPR023334" /db_xref="InterPro:IPR036431" /db_xref="UniProtKB/TrEMBL:A8WWQ1" /protein_id="CAP24614.2" /translation="MSVRIDEPQLFVSMSKEPTQETVNVGAHDETSSNCDERPDDQID EQKSTPPGSPDLAANLNMFDMESRQKVVQRLIHSQLNLSNLRTPLNLPPIFQALQGPF NIQQQLLGLASGLTAISPGLDDYDEENTNGVEPEDLTLGGFRKENSVKSDEPSESGVN ASGGPAWSYEEQFKQLYELSDDVKRKEWLDDWLNFMHRIGKPVTRIPIMAKQVLDLYE LYRLVVQHGGLVEIINKKLWREITKGLNLPSSITSAAFTLRTQYQKYLYDYECEKEKL SNQSDLQQAIDGNRREAPGRRTAPSFPLPFQLPHAANAAASMLNKQLNGLGMRNDLLD DENTLSLQASGLFGAGYGAEQMAMLEAHQRNMERAQRVVEQAARQSLGLTANSNGNGG NHSNSGRESTSSNDSDIPGNRFKTLKENNLISVKRAKLEIDHKSNSNSSLRISTKTSD DSKNSMTVSMEINGITYQGILFAQDEAISES" CDS join(88076..88490,88537..88736) /gene="CBG03783" /locus_tag="CBG_03783" /standard_name="CBG03783" /product="Protein CBG03783" /note="Predicted" /db_xref="InterPro:IPR004296" /db_xref="UniProtKB/TrEMBL:A8WWQ2" /protein_id="CAP24615.1" /translation="MAENSDTLLQLAQLGYSMIAPIVLTGYTLSQCGGKKKKGGAASA GGAEEKSGGGASQKSEKKNDDKPAGGTEKPGEAGPKAPTDKNAVAGTHDPNYQTLANV DGNVFQEKGAAGGAAPAAGGAAPAAGAPKPGGPGMAATHDPNYQTLAGIGNDCFDKKD GGAKPAAGGAAPAAPKPGGPGMAATHDPNYQTLAGIGNDCFQKK" assembly_gap 89602..89913 /estimated_length=312 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(92005..92109,92154..92246,92290..93123,93168..93254) /gene="Cbr-rae-1" /locus_tag="CBG_03784" /standard_name="CBG03784" /product="Protein CBR-RAE-1" /note="C. briggsae CBR-RAE-1 protein; contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR019775 (WD40 repeat, conserved site), IPR001680 (WD40 repeat)" /note="Predicted" /db_xref="GOA:A8WWQ3" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR019775" /db_xref="InterPro:IPR036322" /db_xref="InterPro:IPR037631" /db_xref="UniProtKB/TrEMBL:A8WWQ3" /protein_id="CAP24616.2" /translation="MFGATGFGNKSLFGGSNLSTTASTTATATQNDDFFVDGAPEDTI QVIKFSPQPQDKPMIACGAWDGTTRVWMLNDSNNFEGKAQQNIPAPILDICWTEDSSK IFLACADKEARLWDLASNQVAVVGTHDGPVKTCHWINGNNYQCLMTGSFDKTLRFWDM KNLPNQTQMASLTLTERVYAADVLYPMAVVALANKRIKVFNLENGPSEVKDIESPLKF QIRCISIFRDKQNQNPAGFALGSIEGRVAVQYVEAANPKDNFTFKCHRSADLVNGYQE IYAVNDICFHPQHGTLVTIGSDGRYSMWDKDARTKLKTSEPHPMPLTCCDVHSSGALM VYALGYDWSRGHEGNTQPGSKIVIHKCVDDMKPRVPKK" assembly_gap 95846..96182 /estimated_length=337 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(96907..97095,97142..97414,97479..97589)) /gene="Cbr-ncs-2" /locus_tag="CBG_03785" /standard_name="CBG03785" /product="Protein CBR-NCS-2" /note="C. briggsae CBR-NCS-2 protein; contains similarity to Pfam domain PF00036 EF hand contains similarity to Interpro domains IPR001125 (Recoverin), IPR002048 (Calcium-binding EF-hand), IPR018248 (EF-hand), IPR018247 (EF-Hand 1, calcium-binding site)" /note="Predicted" /db_xref="GOA:A8WWQ4" /db_xref="InterPro:IPR002048" /db_xref="InterPro:IPR011992" /db_xref="InterPro:IPR018247" /db_xref="InterPro:IPR028846" /db_xref="UniProtKB/TrEMBL:A8WWQ4" /protein_id="CAP24617.1" /translation="MGIKGSKPKLSKEDLEFLKKNTNFTEEQIKEWYKGFVQDCPKGH LTKEQFIKVYKDFFPSGSAEGFCEHVFRTFDTDNSGFIDFKEFLLAINVTSSGTPEQK LEWAFRMYDIDGNGTIDEKEMIKIIEAIYEMLGPEVTKSADDSPRKRAKMIFEKMDVN NDKELTLKEFVDGCLADKELFQILTNEVKK" CDS join(103700..103730,103742..103829,104194..104257) /gene="CBG25226" /locus_tag="CBG_25226" /standard_name="CBG25226" /product="Protein CBG25226" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFJ6" /protein_id="CAR98676.1" /translation="MKMYVEEKGGEEQEAPKKTGETSSGGSGGSIGWWCARQVVYLMI ETEKEREKKVLRKGFE" CDS join(104390..104399,105992..106236,106812..106883, 106960..107061,107205..107269,107953..108072, 108805..108946) /gene="Cbr-ercc-1" /locus_tag="CBG_03787" /standard_name="CBG03787" /product="Protein CBR-ERCC-1" /note="C. briggsae CBR-ERCC-1 protein; contains similarity to Pfam domains PF12826 (Helix-hairpin-helix motif) , PF03834 (Binding domain of DNA repair protein Ercc1 (rad10/Swi10)) contains similarity to Interpro domain IPR004579 (DNA repair protein rad10)" /note="Predicted" /db_xref="GOA:A8WWQ6" /db_xref="InterPro:IPR004579" /db_xref="InterPro:IPR010994" /db_xref="InterPro:IPR011335" /db_xref="UniProtKB/TrEMBL:A8WWQ6" /protein_id="CAP24618.2" /translation="MSSRGDDEKTAMTTTPTTTQFPSSSSSELPGVVGGGGSGALVVN RRRQEGNPVLKYVRNVRYEWGDIGPDFECGPTFGVVYLSFKYHKQHPEYVYTRINGKA ENRYRNKVLLGYCNMEEPRHVLRELNMICFREAWTLVVVYTVEEAAEYIELFKTTQKK EITVKKKAIDDGGDSSMSDERRRNRETAIGFLTAARSITKTDADRLLYHFGTLQEIST ASETAISACPGVGPIKAKNLHSFLHTIVSANDQ" assembly_gap 105272..105281 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(109260..109910,109960..110250) /gene="CBG03788" /locus_tag="CBG_03788" /standard_name="CBG03788" /product="Protein CBG03788" /note="contains similarity to Pfam domains PF09140 (ATPase MipZ) , PF01656 (CobQ/CobB/MinD/ParA nucleotide binding domain) , PF10609 (ParA/MinD ATPase like) contains similarity to Interpro domains IPR002586 (Cobyrinic acid a,c-diamide synthase), IPR019591 (ATPase-like, ParA/MinD), IPR015223 (ATPase MipZ/NubP2/Cfd1), IPR000808 (Mrp, conserved site), IPR003593 (ATPase, AAA+ type, core)" /note="Predicted" /db_xref="GOA:A8WWQ7" /db_xref="InterPro:IPR000808" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR005977" /db_xref="InterPro:IPR019591" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR028601" /db_xref="InterPro:IPR033756" /db_xref="UniProtKB/Swiss-Prot:A8WWQ7" /protein_id="CAP24619.1" /translation="MSDVPEDANAGCPGTGSAGAGKASGCAGCPNQGACATGQGPPPD ADVPKIQDRFSRIKHKILILSGKGGVGKSTLTSNLARALASDPSKQVAILDVDICGPS QPRMMGVEDEEVHNSADGWTPVGIQPNLTLMSIAFLIGDKNDAVIWRGARKNGMIKQF LKDVDWGEVDYLLIDTPPGTSDEHISLVQFLLQAGPLDGALIVSTPQEVSLLDVRKEV SFCIKTKVPILGVVENMARFVCPNCAHTTLLFPTSTGGAEKMCEDSNLELLAQLPLEP ALAEALDNGEDFFETNPDSTLAKSFMDLAEKVKAKLH" CDS join(110469..110696,110745..110935,112263..112703, 113831..114173) /gene="CBG03789" /locus_tag="CBG_03789" /standard_name="CBG03789" /product="Protein CBG03789" /note="contains similarity to Pfam domain PF02801 Beta-ketoacyl synthase, C-terminal domain contains similarity to Interpro domains IPR020841 (Polyketide synthase, beta-ketoacyl synthase domain), IPR000794 (Beta-ketoacyl synthase), IPR014031 (Beta-ketoacyl synthase, C-terminal), IPR018201 (Beta-ketoacyl synthase, active site)" /note="Predicted" /db_xref="GOA:A8WWQ8" /db_xref="InterPro:IPR000794" /db_xref="InterPro:IPR014030" /db_xref="InterPro:IPR014031" /db_xref="InterPro:IPR016039" /db_xref="InterPro:IPR018201" /db_xref="InterPro:IPR020841" /db_xref="UniProtKB/TrEMBL:A8WWQ8" /protein_id="CAP24620.1" /translation="MHRVVVTGMGAISPFGVTVNALKNGLNEGRSGLKYDEALKFVVG SVPGERVEDRWAAGQQREMSRASMFALVASDEALSQANAQNLDHDETAVNIGTCMSDL EHIGETAQKVAEGQTRRVSPYFVPRILNNLPAGYVAMKYKMRGGVEATSTACATGLHC IGNAFQSIRYGNSRRALAGAVECALNPIALAGFDRMRALARGDQPSISRPFDKRRAGF VMSEGVGVVFLERLEDAEARGAQILAEVLGYGISSDCYHISTPDPSAIGAVLSMRRAL GNASLDPVQIGYVNAHATSTPNGDSVETEAVRKVFPNQNIAVSSIKGHIGHLLGAAGS VEAIATICAMNDNVLPGNRNLEESEEDEGLNLLRNNSKWVDGHPKISICNSFGFGATN ASLILKQF" assembly_gap 113175..113760 /estimated_length=586 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(114437..114570,114654..114728, 115555..115670,115765..115890,116202..116891, 117242..117423,117474..117539,117907..117967, 118243..118499,118548..119246,119290..119547, 119857..120006,125837..125944)) /gene="CBG03790" /locus_tag="CBG_03790" /standard_name="CBG03790" /product="Protein CBG03790" /note="contains similarity to Pfam domain PF00169 PH domain contains similarity to Interpro domain IPR001849 (Pleckstrin homology domain)" /note="Predicted" /db_xref="InterPro:IPR001849" /db_xref="InterPro:IPR011993" /db_xref="InterPro:IPR039597" /db_xref="UniProtKB/TrEMBL:A8WWQ9" /protein_id="CAP24621.1" /translation="MNDCKRFEANIFNNGKCKICYKSKQNHSSESIENAKMNRKVTAC GFLYVAPPNLDFSMQSHSAKRWQRRWFTLFDSGDLTYAIDNSMDTLPQLSIDMSLCYR VCEAHAITGNAHSILLAFNKTREDQPSIIYIKADTTEEIRWWQNGLSKYANSQNVTIR PPRRGIDELPMLSEDTMKDVPSCASSRCSSPVERLEIDRMIEGKELRGSVRSVKQRSV RDEKKESEDVATLPATSNVVINVPVNSCSPSPRDEPTSTTTSPTTPTTTPTQKLNIDI LNVHTLRKGWLMLRGKSDNDWCKHWVVLAGLQLKLYKDVWAEDSTAPLLTVDLSQCEN VYPSASARNYGIEIKCRRARYVLSAMTPGIRDSWVSALQQNRHHPSPTFTETFSNDAN SLADSSDILGLPVKKKHIAYVAPESHHSNSMMDEHSSTELEEEEHNTNTARRRRSRRV GSRTSESADPRGRGRGESLSPSVRRSPVARVKERRGDMRQRHASNSSAASHQEKPSRE ELQRHIGTASRISSDENRLRSLEQQVENLRSQLHEAKEDSTRRKRETVNQEIKELRIT LKSSEDELQRYRKEVDTLRRQISQNTQTLTLQRAILSTLRTQLSALSSLLRSSLFLGA VDLFDSLDNILDRISVDLSLEQTEDVLRQTTELFEKVSSAVTIPYLSDSWTMTEQEKE PREKTPDEEIEETIRQIRRNHTSEVNSIKSQCEQRLAVLKERAEREEGRRKKLQEQLV MATTRSDESISSVKTSFSQMLAEQRKTFDEELEVVKKEHEERLMEEKHATRLALEAVR RAHEEELKNVAEKNKNGEGSNIGRQSEIFDEMREELINVCALYSAKCLENSQLDEQLA NLISEKEASVELSIENDKLRSEVDKKSKEIHDLQRKMNNYEKLSQSRTDPEVLAGTTV SRARREKQKKRNRRHDVRFHSNPIEVPQHLIEDVRRSLDVPVSERRKFFEHIAEYSTP F" assembly_gap 129887..130171 /estimated_length=285 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(138290..138307,138411..138514,138562..138696, 138747..138836,138886..138987,139041..139230) /gene="CBG03793" /locus_tag="CBG_03793" /standard_name="CBG03793" /product="Protein CBG03793" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WWR0" /protein_id="CAP24622.1" /translation="MGAFDRVKAQVASDSKWTSSPYKGFVAGSPSGTYVDIVSTAFED ATNTMNFARHSKYDEMYTPYLGSFRERHNYTSIAPSLCINRPNRAIEYDLAPHKAYNP RQSEWLLEKDKKYRVRGSRNIIHSKSTSDLSLPPLTRRTFTVPTDTMRHQNQFLYWNG RALGLDYVAPFLRREDYSRHEDRRYQRIYWSPQFIDLLPSCRHSAHLMLSAY" assembly_gap 141228..141761 /estimated_length=534 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(142721..142816,142867..143379,143462..144320, 144365..144555,144606..144814,144861..145662, 145721..145840) /gene="Cbr-rme-2" /locus_tag="CBG_03794" /standard_name="CBG03794" /product="Protein CBR-RME-2" /note="C. briggsae CBR-RME-2 protein; contains similarity to Pfam domains PF00008 (EGF-like domain) , PF07645 (Calcium-binding EGF domain) , PF00057 (Low-density lipoprotein receptor domain class A) (4), PF00058 (Low-density lipoprotein receptor repeat class B) contains similarity to Interpro domains IPR000033 (LDLR class B repeat), IPR023415 (Low-density lipoprotein (LDL) receptor class A, conserved site), IPR018097 (EGF-like calcium-binding, conserved site), IPR006209 (EGF), IPR000152 (EGF-type aspartate/asparagine hydroxylation site), IPR006210 (Epidermal growth factor-like), IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR001881 (EGF-like calcium-binding), IPR013032 (EGF-like region, conserved site)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WWR1" /db_xref="InterPro:IPR000033" /db_xref="InterPro:IPR000152" /db_xref="InterPro:IPR000742" /db_xref="InterPro:IPR001881" /db_xref="InterPro:IPR002172" /db_xref="InterPro:IPR011042" /db_xref="InterPro:IPR013032" /db_xref="InterPro:IPR018097" /db_xref="InterPro:IPR023415" /db_xref="InterPro:IPR036055" /db_xref="UniProtKB/TrEMBL:A8WWR1" /protein_id="CAP24623.2" /translation="MPIFIHFRNYFITKRAMRTAWFLTLFTYLLIKNTTQAPVTNTTC DLEKEFDCGSGSLRCIPAEWQCDNIADCDNGKDELGCTYAHHCGKGFMLCKNTVCVGG EFKCDGEDDCRDGSDELHCEYNSRRSRSDRVAPSPFPNTFVGHNGPECHPPRMRCRSG QCIQADLICDGHADCTGGDDEVNCTRPNIIGIQMLPVHTDSPLKDECRTGYTMCFSGD VCIPNSFLCDGDADCDDKSDELNCELNAPNEEQFLSGQADHMHSCSAAGKFACETKGT EMVVCLPMNSTCNGIKECPFGDDESRHCSECARTRCDHTCMNTPRGARCICQEGYKLA DDGVTCEDEDECATFGHICQHFCEDRLGSYVCKCANGYELEDDGHSCKYETSTTSEGY LFISLGGEVRQMPLADFHDGSNYASIQKHSGHGNIKSIDFMHRNNKMFMAISDDQGEP TGELAMSENGLLRVLRENIIGVGNVAVDWIGGNLFFTQKYPSPSVGVSVCTMNGMFCR RVIEGQTQGQTYRGLVVHPMRGIIVWLESFQKLHRVMMANMDGSQVRVLVDNKLESPS ALAIDYIRQDVYFGDVERRLIERVNIDTKERRVVVSEGVHHPFDMAYFNGYLYWSDWG SETLKVQELSHHHSSAHVIHSFNRFPYGLAINHSLYQTGPPTNPCLELECPWLCIIVP KTDLITTAKCVCPDGYGYSIFDNSCVPPTTNEEKNKLENLSHIGAALMAEYCEAGVAC MNGGMCRELQNEHGRTHRIVCDCEEPYDGEFCERLNPEMLAALEEAGTPAGIIALVLI SLLILVVIGCSAFFWFAQRELTNDVISTARVHVDNMARKAEDAAAPFVDKLRKVTDRP SSSSPKDGCHSATNVNFVTDETTAERRVRMQTSPSSYGNPLYDEIPDVSSGFTISSSA PFAGVIRFEDDNSLL" CDS complement(join(148026..148241,148293..149102, 149147..149290,149341..149467,149520..149650, 149696..150004)) /gene="Cbr-hrdl-1" /locus_tag="CBG_03795" /standard_name="CBG03795" /product="Protein CBR-HRDL-1" /note="C. briggsae CBR-HRDL-1 protein; contains similarity to Pfam domain PF02845 CUE domain contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR003892 (Ubiquitin system component Cue)" /note="Predicted" /db_xref="GOA:A8WWR3" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR003892" /db_xref="InterPro:IPR013083" /db_xref="UniProtKB/Swiss-Prot:A8WWR3" /protein_id="CAP24624.1" /translation="MNRGNPQALRHPQVPLGIANIIGRSTFPSVEGYLALSLCVAFIA SASVFTHFHSQPEIKRLLEEELRNNTRLTTAFGINIDTIAGSTVFQMAHYILTDTTLI WVAINSYFAILAMCTKLIIKLTFKELSRQEEVAARQAFLSYILLTIVYLSVVTGPQKG HRVMPWMIWGGVCGFLSHLQFVTCQRLKYTSPSCDRGSQRVSFISLFLFFVSIAMTFM VSRFQQHLEWQPAVLLYFDCLLAVFRSTYILFRCISSSRVFSFNPDSVRHFNYWLELA TNFACELLQFLSYAQLFVFAPGLNLTSIFFLYHMKLTYNCMREQLGRHRTHKKIFEHI ESAYPSVKAANSDDRCIVCWELLGTSRRLPCSHQFHDWCLMWWLAQDSSCPTCRYVIP SPQEEASRTDSGNGNTMFRFNGRTFGFFTLPSFTVEVGSSFGNIFGRAAEPTQEQLQS MLETVLEMFPQMSPETILADLRQSGSAQSTIENILEGRMGLNASLIPGVLDEDLSDDT DNELEYEEHVEVVQEPDRTRQRTWTKLSSSSGEAELSYYEIQRANMIETYRRKYLASD KAADLRAMGITE" CDS complement(join(152166..152278,152324..152423, 152684..152869)) /gene="Cbr-cco-1" /locus_tag="CBG_03796" /standard_name="CBG03796" /product="Protein CBR-CCO-1" /note="C. briggsae CBR-CCO-1 protein; contains similarity to Pfam domain PF01215 Cytochrome c oxidase subunit Vb contains similarity to Interpro domain IPR002124 (Cytochrome c oxidase, subunit Vb)" /note="Predicted" /db_xref="GOA:A8WWR4" /db_xref="InterPro:IPR002124" /db_xref="InterPro:IPR036972" /db_xref="UniProtKB/TrEMBL:A8WWR4" /protein_id="CAP24625.1" /translation="MAQLAKTAVAALSKKLVAPAAVARRTLATEASPEDYGYYPDPLE HATGREKKMLLARLAGDDRYEPKVYYRAEASTKQKPNLVPSHYDFRIIGCMCEQDSGH VNFMTIAKGEPKRCECGHWFKGVDADPESI" CDS join(155521..155740,155791..156404,156449..156964) /gene="Cbr-tba-1" /locus_tag="CBG_03797" /standard_name="CBG03797" /product="Protein CBR-TBA-1" /note="C. briggsae CBR-TBA-1 protein; contains similarity to Pfam domains PF00091 (Tubulin/FtsZ family, GTPase domain) , PF03953 (Tubulin C-terminal domain) contains similarity to Interpro domains IPR002452 (Alpha tubulin), IPR002453 (Beta tubulin), IPR000217 (Tubulin), IPR003008 (Tubulin/FtsZ, GTPase domain), IPR004057 (Epsilon tubulin), IPR002967 (Delta tubulin), IPR018316 (Tubulin/FtsZ, 2-layer sandwich domain), IPR017975 (Tubulin, conserved site)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WWR5" /db_xref="InterPro:IPR000217" /db_xref="InterPro:IPR002452" /db_xref="InterPro:IPR003008" /db_xref="InterPro:IPR008280" /db_xref="InterPro:IPR017975" /db_xref="InterPro:IPR018316" /db_xref="InterPro:IPR023123" /db_xref="InterPro:IPR036525" /db_xref="InterPro:IPR037103" /db_xref="UniProtKB/TrEMBL:A8WWR5" /protein_id="CAP24626.1" /translation="MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG ESFTTFFSDTGNGRYVPRSIFVDLEPTVVDEIRTGTYKQLFHPEQMITGKEDAANNYA RGHYTVGKELIDTVLDRIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYG KKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLSVD RPSYTNLNRIISQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLAAYTPLISA DKAYHEALSVNDITNSCFEPANQMVKCDPRHGKYMAVCLLYRGDVVPKDVNTAIAAIK TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWSRLDYK FDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNEGGNEEEGEEY" CDS join(157178..157510,157542..158053,158101..158323, 158374..159244,159297..160213,160262..160428, 160475..160598,160652..160690) /gene="Cbr-drsh-1" /locus_tag="CBG_03798" /standard_name="CBG03798" /product="Protein CBR-DRSH-1" /note="C. briggsae CBR-DRSH-1 protein; contains similarity to Pfam domains PF00636 (Ribonuclease III domain) (2), PF00035 (Double-stranded RNA binding motif) contains similarity to Interpro domains IPR001159 (Double-stranded RNA-binding), IPR011907 (Ribonuclease III, bacterial), IPR000999 (Ribonuclease III)" /note="Predicted" /db_xref="GOA:Q61XX9" /db_xref="InterPro:IPR000999" /db_xref="InterPro:IPR011907" /db_xref="InterPro:IPR014720" /db_xref="InterPro:IPR036389" /db_xref="UniProtKB/Swiss-Prot:Q61XX9" /protein_id="CAP24627.1" /translation="MDFTEIHKRSRRKKFQQIHQDRKDEMIQQLGRRFHNQPSTSATY PSAVEDIPLPSEVPNVFGAPPPLTNADFHRNFLVDPDVVVSHSASLIRSNRHIVKAED AEQYMMVSRERVGTTAERVLEDFNSRVIKPLKAKRRLQIDVPYIDHPLHSMRSKTPER KENEEDSDSEIRSSDSSSDAEYGSDVEEEPDSCRRKKRTHKIQKADSSQTKVEEKERQ NTLLRMGIERKRNHPNAIDPHISYNEKGLGNDSPECRCPFPIRNRGLKHGYYAGENQV LKCSKNDRANLHYYTLHVTPAPNESQIQKTQMLINGMEYHFEGFTMVTHAPLPDCMTR RPVFKYSIDYEFQLIEEFMPTECFDPEDCNSIFEYIFHDIFELLDFDLYPKHLPPGTA SCPTIHIVPRFVAMENNTTFIWSSKTVLAFFLLHGKNNMFSPEDVEKNCAMSDDAFGR TIAKLKQSIVLNPMKKPSALRADWFSRDLENKEMFLIQNTIRSQNFASPFLPQIAALE KKMSRLKQEKKDSGNKNPHYENLKAELIVLKDKHREARQLKLKLPVKDYIDTGLKPDV VAHVAMAIIASHHIRYNFSLSVFEKVIEYKFNDRRIVELALIHSSFRSYYGTTPDHVK NMISNCGYRKKYGAEERREKKKGIISLFNIMGGETSGGEPILHNERLEYLGDAVVELI ASHHLFFILNHHFEGGLATYRTALVQNRNLAKLAMNCRIDEMLQFAHGADLINEAEWK HALANAFEALMAGVFLDSGIAPCDAIFSKAMYGKDPEMKKVWDHLNEHELKIEDPLGD RDLSRITPALTDFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDS VLQLIISDYLYRNFPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFVIKAPHRKNDL KMKDKADLVEAFIGALYVDKGLEYCRSFIRTVFCPRLKHFINSEKWNDAKSHLQQWCL AIRDSRNPNPAMPEYRLLGIQGPTNNRIFRVAVYFRGERLSSAAASNMHTAELKAAEN ALAALEKASFSRMREKYMSGRQHRLHRIFFS" CDS complement(join(160793..161129,161176..161262, 161311..161378)) /gene="CBG03799" /locus_tag="CBG_03799" /standard_name="CBG03799" /product="Protein CBG03799" /note="contains similarity to Pfam domains PF08534 (Redoxin) , PF00255 (Glutathione peroxidase) , PF00578 (AhpC/TSA family) contains similarity to Interpro domains IPR013740 (Redoxin), IPR000866 (Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant), IPR000889 (Glutathione peroxidase)" /note="Predicted" /db_xref="GOA:A8WWR8" /db_xref="InterPro:IPR000889" /db_xref="InterPro:IPR029759" /db_xref="InterPro:IPR029760" /db_xref="InterPro:IPR036249" /db_xref="UniProtKB/TrEMBL:A8WWR8" /protein_id="CAP24628.1" /translation="MSSVYDFTVKNANGDDVTLSQYKGKVLIIVNVASQCGLTNKNYT QLKELLDVYKKDGLEVLAFPCNQFAGQEPSCEVDIAAFVADKFKFEPTLFQKIDVNGD KASPLFTFLKNEKGGFMFDAIKWNFTKFLVGRDGKIIKRLGPTTDPKDMKKDIEAALG ERM" CDS complement(join(162106..162344,163125..163206, 163261..163350,163398..163515,163561..163708, 163763..164029,164945..165151,165199..165406, 165457..165571,165633..165742,165803..165886, 165933..166054,166108..166258,166365..166457)) /gene="CBG03800" /locus_tag="CBG_03800" /standard_name="CBG03800" /product="Protein CBG03800" /note="contains similarity to Pfam domain PF02469 Fasciclin domain contains similarity to Interpro domain IPR000782 (FAS1 domain)" /note="Predicted" /db_xref="GOA:A8WWR9" /db_xref="InterPro:IPR000782" /db_xref="InterPro:IPR036378" /db_xref="UniProtKB/TrEMBL:A8WWR9" /protein_id="CAP24629.1" /translation="MLLFISLLLIIPKHVKSDLWAETERMPDLQQWRALCGYYAVATA YMKDSNARITVFAPVDDVFTYNPDIRALDQKETLSHIVDSQVVDLTMNKVWEKQTLIR STINSGYTYITQFENNPGNFSYFANAGMLCNHASNQWGIISGEQYLFKICTPIGHRPY PGTALSFIREHDVTVFEERQYNNRDLSQIRDILDRTPDIALVIYGSSAWNGFHTFFIP NDAAFARVVDRNRIDREVLLAHVTSTNRVLFTWPWLYDGGQHYYPSVRFSANIIEDNF KLKLVMRNITDRRTGKWDLYAVSEVYERYSQFRRGAVWAKILVPNIPTQNGVVHIIDN VLGIVSETIDMMIYRNEKTTTLMRYINTIGQIVRNYFSATGGLVTFFAPWNEAFDRIP EQIERRLLRDRIWLEQILKLHIVPAKELTSDEITNETIVNTIDNMRQLYFIKGEWPAN NVTYYVIGGGIKTAIMMDNVAATNGIVHYIERVLGVPYQTLWEIMRNESRLQSSFHMM QNLQLRYSMDPWQVLTPEQNFTFFVPTNEAWHKQPATLVNRMNDGGHWQALQYVYKRH IVQGHALMYTDLRERTYVMMNDEKVVLRRRGRFWELYWPRGNRRAQVIEGGEIAGING YMHMIDDVLIYEPDLRAHACTTEPVFFQFLIVCLVMVWRPGWFSQLYTAFLYR" CDS complement(join(166879..167001,167640..167771)) /gene="CBG03801" /locus_tag="CBG_03801" /standard_name="CBG03801" /product="Protein CBG03801" /note="contains similarity to Interpro domain IPR004202 (Cytochrome c oxidase subunit VIIc)" /note="Predicted" /db_xref="GOA:A8WWS0" /db_xref="InterPro:IPR004202" /db_xref="InterPro:IPR036636" /db_xref="UniProtKB/TrEMBL:A8WWS0" /protein_id="CAP24630.1" /translation="MLSRQVIRPIVQAVRKGHSSHSPSAVTFTGQGPNTFVNDGWASA RLPFHVTNKWGFAAKAVTFLAIGFWAPFIVVEYQLRKANQ" CDS join(168317..168423,168469..168605,168650..168816, 168865..169674) /gene="CBG03802" /locus_tag="CBG_03802" /standard_name="CBG03802" /product="Protein CBG03802" /note="Predicted" /db_xref="GOA:A8WWS1" /db_xref="InterPro:IPR007811" /db_xref="UniProtKB/TrEMBL:A8WWS1" /protein_id="CAP24631.1" /translation="MSKPGRPNLFLAGKREAPVQQKQTRGGASNRGAGRGRGGRGGRG GAGGRPRQEIIQTGGVFSHGLGGEFPTKKRDKDYDASQFAYKRDRESGDPSTSDEKKE EIKVEGKASFEGYDALWRSDDEGDEAELRALHPKGQFVSDLRRGHVMPVVLPVDDQSQ FLNIINKSARLSLEEDNEIIEEEKKPSQNTVDNTAQKRTAQQLITMLESSTTDLLHLQ LPSVVGAICNNIESNVEIPMEIDDPDSEIPPGIPKAPAPPSGLPQRQRIGKLQVTKKG RLILQIGGHSIDITTKPISEKQQGTVLLEADPAADQVQAPSPFAQPSTIENSLYHLGN VKHNLVGSMAWGGLSEKMEEEEEERKKLKKTTIEDGDVTITDGDREKIESLEREQAKW AVMAAKWASGLSTS" CDS join(169845..169850,169894..169986,170035..170154, 170204..170566,170612..170748,170792..171415, 171471..171549) /gene="CBG03803" /locus_tag="CBG_03803" /standard_name="CBG03803" /product="Protein CBG03803" /note="contains similarity to Pfam domains PF06293 (Lipopolysaccharide kinase (Kdo/WaaP) family) , PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR010440 (Lipopolysaccharide kinase), IPR000980 (SH2 motif), IPR008266 (Tyrosine-protein kinase, active site), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WWS2" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR000980" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR008266" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR020635" /db_xref="InterPro:IPR035849" /db_xref="InterPro:IPR036860" /db_xref="UniProtKB/TrEMBL:A8WWS2" /protein_id="CAP24632.2" /translation="MLSVSRGPRRHEYRSEVETISRGPDLLLKATDETSSDGGSTSIT KSVEDTGSKDKSSQSLVRTHHVLKIKLKKITNWSGCSGAALDDEPFYHGYMSREEAEK LVRTQGEFLLRKTESTKRGEVVVLSVFWDDTANHLVVEKANNGSSYYLKEFCFENISD LVRYHHQTRASVYKSGIKLFSWVIREEWQLYHEQINLGKKLGNGEFGEVFQGMLSVGI FTNDVEVAVKTMKGSKVTADERIKFLREANLMLKLNHKYVVRLYGVATQQEPIMIVME LCSGGSLKGRIEKDEPMSSQLKRKYCKQIAKGMRYLEKKQVIHRDLAARNVLLDKSDN CKISDFGLSLFGKLHKEKKLMKVPIRWLPPETLLKGIYSSKSDVWSFGVVMFEVFSRE YPYSEVKVLKELRKKVAHENLRLKPPSDMPEEDMKVMQMCFEPVESRMSFLQLCKKYK ELTSPLPTWNGIANKLIGIGTAV" CDS join(176773..176775,177285..177407,177459..177540, 177608..177653,178541..178630,178919..179077, 180571..180657,180705..180839,180887..180970, 181453..181707,181756..181975) /gene="CBG03805" /locus_tag="CBG_03805" /standard_name="CBG03805" /product="Protein CBG03805" /note="contains similarity to Pfam domain PF00112 Papain family cysteine protease contains similarity to Interpro domains IPR013128 (Peptidase C1A, papain), IPR000169 (Peptidase, cysteine peptidase active site), IPR000668 (Peptidase C1A, papain C-terminal)" /note="Predicted" /db_xref="GOA:A8WWS4" /db_xref="InterPro:IPR000668" /db_xref="InterPro:IPR025660" /db_xref="InterPro:IPR025661" /db_xref="InterPro:IPR038765" /db_xref="UniProtKB/TrEMBL:A8WWS4" /protein_id="CAP24633.2" /translation="MATTVRHGPTHVVKIEMTIVRFLFSETISATATCFVTVVQTEET IVVRILRPLAAEKTFKTIRGSMEKVGCSMDGDTMEKNCEKCTCQNGMWKCDGTACLIQ PDILEKLHTGRFSWTARNYSAFWGRSLSDGIKYRLGTLFPERSVQNMNEILIKPRELP EHFDARDKWGHLIHPIADQGDCGSSWAVSTTGISSDRLSIISEGRINASLSSQQLLSC NQHRQKGCEGGYLDRAWWYIRKLGVVGDHCYPYVSGQSREPGHCLIPKRDYTNRQGLR CPSGSQDSTAFKMTPPYKVSSREEDIQTELMTNGPVQATFVVHEDFFMYAGGVYQHSD LAAQKGASSVAEGYHSVRVLGWGVDHSTGRPIKYWLCANSWGTQWGEDGYFKILRGEN HCEIESFVIGAWGKGSKRRRRFKMRKLRRFRKMFK" CDS join(183998..184099,185362..185406,185450..185579, 187099..187238) /gene="CBG03806" /locus_tag="CBG_03806" /standard_name="CBG03806" /product="Protein CBG03806" /note="Predicted" /db_xref="GOA:A8WWS5" /db_xref="UniProtKB/TrEMBL:A8WWS5" /protein_id="CAP24634.1" /translation="MINIFNSPIDATQLDEFAQGKQDENGGEETVFDVKKRKPQVTYG SDGRRMLDGIVEDKQESNALWTTTISRGVANEWREEATGTRLQKTKRYIYKVSYDAQV LVRQTYRRHATPILIVTNLTLFLLFMYICRLFPFNK" CDS complement(join(188532..188660,188706..188880, 188926..189062,189108..189232,189280..189444, 189492..189561,189609..189744,189791..190047, 190093..190190,190242..190440)) /gene="Cbr-sur-6" /locus_tag="CBG_03807" /standard_name="CBG03807" /product="Protein CBR-SUR-6" /note="C. briggsae CBR-SUR-6 protein; contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR000009 (Protein phosphatase 2A, regulatory subunit PR55), IPR019775 (WD40 repeat, conserved site), IPR001680 (WD40 repeat)" /note="Predicted" /db_xref="GOA:A8WWS6" /db_xref="InterPro:IPR000009" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR019775" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:A8WWS6" /protein_id="CAP24635.1" /translation="MVMEVDEPAVAATTSQDEQDEAQNNDVEMDTSEGPIEADQTFEA VDQINWKFNQVKGNIDSEVHTEADVISCVEFSHDGEYLATGDKGGRVVIFQRDQSGKY VKGVRSREYNVYSTFQSHEPEFDYLKSLEIDEKINQIRWLKKKNAANFILSTNDKTIK LWKISERERKIGEDAWNLPRTNRINTTSFRGRLQIPSIVPMELIVEASPRRVYGNAHT YHVNSISVNSDQETFLSADDLRVNLWNLEITNESFNIVDIKPANMEELTEVITAAEFH PTQCNWFVYSSSKGSIRLCDMRDRALCDAYAKIFEEPEDPQSRSFFSEIIASVSDVKF SHNGRYLLTRDYLTVKVWDLNMESQPVETYPVHNYLRTKLCALYENDSIFDKFECDWS GDDKHILTGSYHNLFRTYARGNDGDSKTWEARPQEPYSQLRSRSVVPSAKRKRPNVPP TPEQTEEELSSDQLQFDRKILHTAWHPKDNIIALAATNNLYIFSDV" assembly_gap 191326..191500 /estimated_length=175 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(195215..195322,199402..199465,199739..199974, 200006..200365,200836..201036,201081..201149) /gene="CBG03808" /locus_tag="CBG_03808" /standard_name="CBG03808" /product="Protein CBG03808" /note="contains similarity to Pfam domain PF09412 Endoribonuclease XendoU contains similarity to Interpro domain IPR018998 (Endoribonuclease XendoU)" /note="Predicted" /db_xref="GOA:A8WWS7" /db_xref="InterPro:IPR018998" /db_xref="InterPro:IPR037227" /db_xref="InterPro:IPR039787" /db_xref="UniProtKB/TrEMBL:A8WWS7" /protein_id="CAP24636.2" /translation="MQCIILVSAIFVLVFGIPVPSPTRDVWVGPNCHMCEMRSLLVLF PILVALVWCQKIPNFTVSNAELLALAKKLRQVDVHRARPDQIMLNYQKHTVTRDDSDS APAKLFSRVDSSLLRKPSYELYLNLMDNFNRQTGRKLRLENSWIMSWRQNQCKSCTIG SKLKVRHHNNYFERTNLLGHPIATSPQNFRFWIGQLWFSHYSRALGRPDTSGFEHVFI GEAKNGEISGLHNWLRFYVLENNRTENFDYKGFTVKRFNIMGALKFTWDGLLKRVGSI LIGTTPEYDMALYTMCFLSRRGRETCDVELDGCPLQITSFEIMQQNKVYIGSIYPTAG RLTDECRAQNR" CDS complement(join(201235..201313,201364..201413, 201997..202464,202796..202867)) /gene="CBG03810" /locus_tag="CBG_03810" /standard_name="CBG03810" /product="Protein CBG03810" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WWT0" /protein_id="CAP24638.1" /translation="MEDFLQLIVKCFPMATFILIAASCTSKPKEQVVSRGRKLTMSTS SMTSELEDDDRKEEVEEEKVVIPMEMNEEENRKVACGNKKDSKDKPEKPGEDSPDKKD NNKKEELKAEQEIILDETNPHFAYLLAGENREPKDCVFHSRGALEQTAAFQWTMKKRL SFDEGCWKQLSRRISAIKAEGFEVRVNTRQAKENRNNADRETKLDAVFAKWAAVKPKK KGAE" CDS complement(join(204200..204276,204706..205462, 205512..206174)) /gene="Cbr-gfi-2" /locus_tag="CBG_03811" /standard_name="CBG03811" /product="Protein CBR-GFI-2" /note="C. briggsae CBR-GFI-2 protein; contains similarity to Pfam domains PF12796 (Ankyrin repeats (3 copies)) (3), PF00023 (Ankyrin repeat) (3)contains similarity to Interpro domains IPR002110 (Ankyrin repeat), IPR020683 (Ankyrin repeat-containing domain)" /note="Predicted" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR020683" /db_xref="InterPro:IPR036770" /db_xref="UniProtKB/TrEMBL:A8WWT1" /protein_id="CAP24639.2" /translation="MDHSELIAELPEIERMTAQERIALARDRRRLQLRKNDERERALP PPRPRRQRLHFAAEVELLEATCRADYAEVERLLNENANPNLHNDDGLTPLHQCAIDDN QQIMLLLLDRGANVNAQDTEQWTPLHAAACCAHINIVKILIQAGANLLAVNAEGNMPY DICDHEETLDVIESEMAARGITQSYIDEMRGAPEKAMLDDMKMLHQQGRELDVRAPDG STYLHVASANGYYDVAAFLLTCSVSPLIRDNDFWQPVHAAACWAQPDLIELLCQYGGD IHAKTKNGETPMDLCEDLSTKQVITALVQTEARRRRLAFGVRDSRRQSKKRKKFESPQ QGATTGDNPFSARGAIRRQSLRDRSGLTPARIEAQKEGADILRTWSKEDVSADVHASQ AGSLQHQRESPSKRVLKVSCEEQKDSISHPSKYYFQSSQNKQAKPMSPDEWLRKLETN GTADDDLDTTPKRGGSTRRRQKKVPGDLSDSRNGDGRRQKSTCCCVIC" CDS complement(join(215638..215746,215791..215933, 215978..216127)) /gene="Cbr-ceh-5" /locus_tag="CBG_03813" /standard_name="CBG03813" /product="Protein CBR-CEH-5" /note="C. briggsae CBR-CEH-5 protein; contains similarity to Pfam domain PF00046 Homeobox domain contains similarity to Interpro domains IPR020479 (Homeobox, eukaryotic), IPR000047 (Helix-turn-helix motif), IPR017970 (Homeobox, conserved site), IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:A8WWT2" /db_xref="InterPro:IPR000047" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="InterPro:IPR020479" /db_xref="UniProtKB/TrEMBL:A8WWT2" /protein_id="CAP24640.1" /translation="MASESDDNSFIRIIRIKSANGSEKTLEIPAKLDLERPKRPRTVF TDDQLEKLEKAFTDSGYLSGATRAKLAESLGLSDNQVKVWFQNRRTKQKKIESKESVK PIPEPTIENYSNFSLNYWTAAAFLSNNVISS" CDS complement(join(217859..218507,218557..218670, 218777..219073,219744..219822,219936..220029, 220076..220159,220215..220334,220385..220405)) /gene="Cbr-eat-16" /locus_tag="CBG_03814" /standard_name="CBG03814" /product="Protein CBR-EAT-16" /note="C. briggsae CBR-EAT-16 protein; contains similarity to Pfam domains PF00610 (Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)) , PF00631 (GGL domain) , PF00615 (Regulator of G protein signaling domain) contains similarity to Interpro domains IPR000342 (Regulator of G protein signalling), IPR015898 (G-protein gamma-like domain), IPR000591 (DEP domain)" /note="Predicted" /db_xref="GOA:A8WWT3" /db_xref="InterPro:IPR000591" /db_xref="InterPro:IPR015898" /db_xref="InterPro:IPR016137" /db_xref="InterPro:IPR036284" /db_xref="InterPro:IPR036305" /db_xref="InterPro:IPR036388" /db_xref="InterPro:IPR036390" /db_xref="InterPro:IPR040759" /db_xref="UniProtKB/TrEMBL:A8WWT3" /protein_id="CAP24641.2" /translation="MMPPLTKIEVLAKRVMEGAQLKTHKYFRIAVPHAITGQQLIALV LERGAPDDEAEASHLASLLLHHGYMFPVIEHGQPFKDDGTLYRLQRPYFWPSQAELVP DVEYAIYLNKRLLRNEQKHGLEEDEVESFNRLADVLAHMWAFIVQQSELQLKQQKEKK KVDKVVFDSEERAFWKIRKPSRGGPNFLEDPYMKIEKKIRRQNAQGYRCLMDRLRFAI KTKPWLKALKASDTMVTWVDQRAEFDPFLHPPQPSNPWISDEASFWNQPTDTSSAEIP TEKRVKRWGLSVQELVKDPIGRQVLETFLESEFSSENIRFWIAIQDLKYAPNEQIYEK AGRIREEFLAQGAPAQVNVDSRTLDMTLDCIAKAKDASQMRFAFYNSEEHVFTLMAKD SYPRFVRSQIYKAVLTAAQQHGTKRLGWRNFVFNMGTTKKPTSSKPSKARFSRVIMYE NFDSLQPQDSIGTSQALPKQLSSDSLPVRQAHGAK" CDS join(222221..222315,222443..222571,222704..222821, 222871..223164,223214..223384,223433..223623, 223671..223929,224220..224288,224543..224587, 224639..224854,224904..225084,225130..225265, 225311..225417,225466..225590) /gene="Cbr-ocrl-1" /locus_tag="CBG_03815" /standard_name="CBG03815" /product="Protein CBR-OCRL-1" /note="C. briggsae CBR-OCRL-1 protein; contains similarity to Pfam domain PF03372 Endonuclease/Exonuclease/phosphatase family contains similarity to Interpro domains IPR000300 (Inositol polyphosphate-related phosphatase), IPR005135 (Endonuclease/exonuclease/phosphatase), IPR000198 (Rho GTPase-activating protein domain)" /note="Predicted" /db_xref="GOA:A8WWT4" /db_xref="InterPro:IPR000198" /db_xref="InterPro:IPR000300" /db_xref="InterPro:IPR005135" /db_xref="InterPro:IPR008936" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR036691" /db_xref="UniProtKB/TrEMBL:A8WWT4" /protein_id="CAP24642.2" /translation="MATTTFYTKQRCNWIEGRDAKVDEVMREWMHKFCTLQDVKICVS TFNVNGKSPQSVFPTWFSQNKEDIAEFYAVGLQEMDLSVGTYIIDNTKKMEGWVDAIH CSLPGGRTHFNVVGSMRLVGIFVIVFQAAHSKVRVSDVNVKYVATGISVLVNKLGNKG GTAISMKMNDTWVCFVNAHFAAGNNELERRNQDFRDIYNGVVFYPRSQQDGLRDRPLE VPVMCLYDHDVVFWFGDLNYRLNTDIYGISNDEVRRIASSEKFGDLFQYCQLQEQMAR GTVFKDFQEPKVLPFRPTYKYDCGTNTWDTSEKGRVPAWTDRILTYKKYPQVGLELIR PMESVETITISDHKPVRALFNLKVKKINESGANSVYEEAIRESDRRANEELPQVQLSL NEVDFGIVNYLEPKTRSVIVQNVGKSKVRFSFKVRPNAQNNQEICEKWLMVTPTHYQI PQGSSMEISLTVSISTDIVRRIQDILRNGQLQEILVLHLENGRDYFIPVTAVYNNSCF GSTLEKLLSARPKKEVNLIDFDDLESSLSDNCPPNVPRVIYRLVMALRARGAVQLNIE EEQDNEVFNRIRQALETGHPDDMSQIASSYMLYSALIRLLDSLDEPIILEGMFKIIHK EMIRYRTDARQLWTVVRSSLPKPNQAVLELICLMLREFFSQKYELRDQLSLWGTVMFR HDITEEKTHGMFATVLQTMCDYAADVALG" CDS join(226003..226092,226137..226394,226451..226731, 226775..227115,227223..227347) /gene="CBG03816" /locus_tag="CBG_03816" /standard_name="CBG03816" /product="Protein CBG03816" /note="contains similarity to Pfam domain PF03909 BSD domain contains similarity to Interpro domain IPR005607 (BSD)" /note="Predicted" /db_xref="InterPro:IPR005607" /db_xref="InterPro:IPR035925" /db_xref="UniProtKB/TrEMBL:A8WWT6" /protein_id="CAP24643.2" /translation="MSWLLADMKKKMNDAKSTIEQSLKKVSESATDHQKSEEESKSEN PQSTEPESDKIVEQPEETTAQQESTAESAKKSMAALFGGLKVGGGVASSKLFEYAKDA GKKLGEVKNAVIENTMLGELNKEQNDFEKQLQEEREKLKNIDLPWQGLPDEVSAKKQM MSLSTDTRNFLRDSAANSEYSFEQQQAMAALLLREDPNLANVRFQLVPKQVKENQFWQ NYFYRIGLIRQSMLNQGTGRISPVVAAPATSTEEKKVEEQKIEAAPEVSDTQEAKVEE PEVVKEEEVKQESEQVPANNESEEDEEVKETVLEQPAAPGEQTLTSVDEEWEREILAD LNDYEDVVEKTGGKDEEAWEAEIQELLNAE" CDS join(227594..227682,228057..228198,228248..228968, 229015..229082,229126..229434) /gene="Cbr-fce-1" /locus_tag="CBG_03817" /standard_name="CBG03817" /product="Protein CBR-FCE-1" /note="C. briggsae CBR-FCE-1 protein; contains similarity to Pfam domain PF01435 Peptidase family M48 contains similarity to Interpro domain IPR001915 (Peptidase M48)" /note="Predicted" /db_xref="GOA:A8WWT7" /db_xref="InterPro:IPR001915" /db_xref="InterPro:IPR027057" /db_xref="InterPro:IPR032456" /db_xref="UniProtKB/TrEMBL:A8WWT7" /protein_id="CAP24644.1" /translation="MDASCLFKALLATNWALFLWDQYITYRQYKVHRDAEKRPEEVKE LINEEDYKKARDYKIDNHQFGFLQSWFNQLLLTAQLVGGYYPFLWYATEKYPFHVAVF LSINSIIETIIDLPWDLYHTFIIEEAHGFNKQTVPFYFLDKLKKMLVGFALTMPIVYG IEWIVVNGGPYFFVYIWVFISVIVLLLMTIYPTFIAPLFDRYFPLPDGDLKSKIEQLA ASLNYPLTKLYVVNGSKRSAHSNAYMYGFWKNKRIVLYDTLLSGAEKEKVHKLYIDAG EKIEETENDKKRGMSNDEVVAVLGHELGHWALWHTLINLVITEVNLFLCFSVFAYFYK WDALYQAFGYRDTPPIIGMMLVFQFVLALYNQFAHMGQVIHSRSAEFGADEFAAKLGH GDNLIGALTKLGVDNLSMPINDSLYSWCVHTHPPVVERVAAVRAFQAKKQ" CDS complement(join(229909..230235,230287..230331)) /gene="CBG03818" /locus_tag="CBG_03818" /standard_name="CBG03818" /product="Protein CBG03818" /note="contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domain IPR000535 (Major sperm protein)" /note="Predicted" /db_xref="GOA:A8WWT8" /db_xref="InterPro:IPR000535" /db_xref="InterPro:IPR008962" /db_xref="InterPro:IPR013783" /db_xref="UniProtKB/TrEMBL:A8WWT8" /protein_id="CAP24645.1" /translation="MADKKQYISTDPPEKIKFRPDPQEEQKSYLKITNKSEMKQAFKV KCTRNDLFRIKPATGILDYNQTLTIALIYRGGQEKLPSEERHHFGVYHIPAPEGCTCE GAWAEHYGPPQGEHKLRVVWE" CDS complement(join(231530..231649,231937..232125, 232171..232317,232360..232410)) /gene="CBG25227" /locus_tag="CBG_25227" /standard_name="CBG25227" /product="Protein CBG25227" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFJ7" /protein_id="CAR98677.1" /translation="MDSLVLLVLLPAISIIFECCGKKKRKEKSTTPSKEIKDSPVTPA SPEIIQKPDEMAKDKTKSMKSEKNSEKKTKSEDKKSNDKDVEKGNKTKSEKEKKTEEE KKSEKKTKDNEDKEKEKKNEPKKNDEKQAVISDPIVTPETDEYPTLEDDVEQSKNKVK TAKEIDKK" CDS join(235837..235913,235958..236129) /gene="CBG25228" /locus_tag="CBG_25228" /standard_name="CBG25228" /product="Protein CBG25228" /note="Predicted" /db_xref="GOA:B6IFJ8" /db_xref="UniProtKB/TrEMBL:B6IFJ8" /protein_id="CAR98678.1" /translation="MSDPQQVSPHTVRPPCSPVSPHPLHTVSNGESAKKPASRKWWVT QEFKCGNESAEKATPFLSLFYSFSALSLLSPALTLINR" CDS join(236240..236329,236557..236798,237149..237449, 237492..237599,237646..237723,237771..238315, 238366..238591,238726..239058,239109..239610, 239662..239756) /gene="Cbr-sys-1" /locus_tag="CBG_03820" /standard_name="CBG03820" /product="Protein CBR-SYS-1" /note="C. briggsae CBR-SYS-1 protein ;" /note="Predicted" /db_xref="GOA:A8WWT9" /db_xref="InterPro:IPR011989" /db_xref="InterPro:IPR016024" /db_xref="UniProtKB/TrEMBL:A8WWT9" /protein_id="CAP24646.1" /translation="MHPTGHSMLGPTGGPYHHPLPPNPVPYHDQVPTTSHPSWHTASY SGLPTPPYHPYPPPQVQPPPNYPPMPPQQHPPQHHLQMTSHQPQMTQLLTQQQLQQQQ HIQQNQQQSSAYSSPSHAPSTPIQNQKARTEQWVQSWPYAQSPAPSVAPSVMSYHQND DRMSMLSVNTSMTNQFPDSQRCFSSNGSTCENVNPEMAQTNWAQGAEQAIIEWFNTKD PQRKFNMAMTIREWVKRDKLVQVDPAQLPGCIQRLLLIIHDGMKPQQIQTPPSYYPQL WCYLLDILNRLTSYRITIPNIHQIVQLFEPKGNQQYEFRDLICNAMQPTLVCAKQVFD ILENIIKCLNNPKYDKLRSDFARSMKFEKMIGALLGHLGQQIPPSQINPTILVVLRFI ISKDAVLKNCLIWGPDRQRDQVPPQSILMLLKGILMRSEHMLRNSQIANFPDQESMNR NFQEMSMLAQVVTRSFDLLNLLMHESNAIDGFVKLDGIQLIYTIINYPNSNVVRSGFK LLLQVSDSRSLCLTNLKEPLPFIMQRLRDSLMNGEDDIVYSGTGFLSNVVAHKLPVKE LAIAKGAIPLLCDVIMRSTPLSDFAEASKKKLACGIVCNSLRAMNNFLMIWIPMQNGQ RMPIGEYEQQQVRRFIEEVLKRLMTCLSMDSFDVVPLMELRSTILRFFFLVSRTPSMP ADVFFGVTDDFKRKNLVGHIAIALSWADGQKTNEKIKDTRQQLIERAFSLLVRLIEQY DEVQVAHSLYTISCPLNMLNNEQMKPQFILNVLRVCDKILEHSPMLANGWSIYSSTVE MFKNHSNSDIARTASSLLARFPIGDSAMDEGILHTSEFTEL" CDS join(240456..240553,240606..240839,240886..241759, 241810..242927,242973..243333) /gene="Cbr-eif-3.C" /locus_tag="CBG_03821" /standard_name="CBG03821" /product="Protein CBR-EIF-3.C" /note="C. briggsae CBR-EIF-3.C protein; contains similarity to Pfam domains PF01399 (PCI domain) , PF05470 (Eukaryotic translation initiation factor 3 subunit 8 N-terminus) contains similarity to Interpro domains IPR008905 (Eukaryotic translation initiation factor 3 subunit 8, N-terminal), IPR000717 (Proteasome component (PCI) domain)" /note="Predicted" /db_xref="GOA:A8WWU0" /db_xref="InterPro:IPR000717" /db_xref="InterPro:IPR008905" /db_xref="InterPro:IPR027516" /db_xref="InterPro:IPR036390" /db_xref="UniProtKB/Swiss-Prot:A8WWU0" /protein_id="CAP24647.1" /translation="MSRFYRRGASDSDTDSSEDEVEELKANKSAKFRDDLDFMAGPEE DEKRVVRAQKDKKFDELKSLIKQNRDAKSNKDLNKLLTGFDTLAKAYDKSKTIFQRQN VTNPRFYIRFLVEIEDYVNKLWEDKEAKAALSKNNTKALSPLRQKLKKYIKDHGLTDL VSDYRANPDEDGYETPEDENDEDDFEEVPEASPGRQAERAADSESESDSDDDDSFNWS SEPDTNSSDDEENVTKMEQLRRYFLKKEFREESKDDKKDKRKRVIKVKEVVEEDDDDW TPVSREKSVVHFDPNEEVTHDVMIKKLNEVMSARGKRTTDRNQHVANLQKLLEVAEEK QLGLGISVKISFCIISALFELNAKISDYMEYETFMNTLRTVNTLLDLLITTDRVKLSV TYAEEDENLKDENEEYRIQGSILIAVQRLDGELAKILQNADCHSNDYIEKLKAEKDMC QLIEKAENYVELRNHLGIFDKHEVCKVYMMRIEHTYYKYQDQNVGEVAKTMDYLCNKI YTLDDEKRLRQRAMLCHVYFLAVHDKWHRARDLLLMSHMQAIVDHSDVDTQILYNRTI CQLGLCAFRHGFIREAHQGLSEIQNTQRAKELLAQAVGTRPHEKTAEQEKIDRSRQVP YHMHINVELMECVYLICSMLLEIPHMASCEFEMRRRMLSRSFHYQLKQSEKASLTGPP ENTREHVVAASKAMLNGDWKKCKDYIVNEKMNQKVWNLFHNADQVKDMVVRRIQEESL RTYLLTYSTVYSTVSLKKLASLFDLSKKDVHSIISKMIIQEELSATLDEPTDCLIMHR VEPSRLQMLALNLSDKLQTLAENNEQILEPRTGRGGYQGPGSWFPGRNERQGDKQKGS GGFQGERRGGPGGPDGKRGNWGSQGGQQRRHPQKPRAF" CDS join(243777..243959,244006..244455,244505..244621, 244690..245151,245210..245254) /gene="CBG03822" /locus_tag="CBG_03822" /standard_name="CBG03822" /product="Protein CBG03822" /note="contains similarity to Pfam domain PF04180 Low temperature viability protein contains similarity to Interpro domain IPR007307 (Low temperature viability protein)" /note="Predicted" /db_xref="GOA:A8WWU1" /db_xref="InterPro:IPR007307" /db_xref="UniProtKB/TrEMBL:A8WWU1" /protein_id="CAP24648.1" /translation="MGKKKAFIDKKASQRFRLVPDNREKSERFKPTQEHLEEQQKYGV YYDDDYDYLQHMRAINEPMKLENVHEEVEKTTIKSSSCPSGFPPAPPLFGLTGVMKKP EFFDEDVANALEDGTDDRSGGELEDNFISLAGGVLDERTMLFRDVRRDVDSDEEEEEE EDGDGQMYDDYNDEELFGEEAVGEIKPTRAEQRVIDDAFEELMDREYNTEQIGELDGD DYEVGGALEPNAGRLHKLVNDKGPSNAEYDEELAKHYVRERLRLIEEGVIKDKEEYEI VEVDEGTNKKMKWDCESFATQYTNIYNHPTLIKEQRGLSRKALKRFDKAVEEMEIAEE NEDEEEDEDMEDDDDADDKESVFSTVSTFRPKGETPEQRNLRKKAVKEARKQRRIEKK ANKTMFAEEKRKLAKGRIGQIKARPV" CDS join(245815..245877,245922..246004,246090..246222, 246547..246624,246670..246732,247350..247494, 247605..247738) /gene="Cbr-tsp-7" /locus_tag="CBG_03823" /standard_name="CBG03823" /product="Protein CBR-TSP-7" /note="C. briggsae CBR-TSP-7 protein; contains similarity to Pfam domain PF00335 Tetraspanin family contains similarity to Interpro domains IPR018499 (Tetraspanin), IPR000301 (Tetraspanin, subgroup)" /note="Predicted" /db_xref="GOA:A8WWU3" /db_xref="InterPro:IPR000301" /db_xref="InterPro:IPR008952" /db_xref="InterPro:IPR018499" /db_xref="UniProtKB/TrEMBL:A8WWU3" /protein_id="CAP24649.1" /translation="MVEGGVTIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDI LGDERLATPIILLVIGSLCTLLGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVII GYALHDSFRLGISNQLQTGMVRYHESRGVESAWDKTHQLFECCGVTNSSDWLTFTSIP DSCCVEEMEGCVRENAPLFEAGCIHSVEQWTLKNGAMVGGICAVLAAIQLVGVCFACC LSKSILKDFHDFYY" CDS complement(join(248518..248665,248710..248928, 248977..249097,249194..249435,249482..249620, 249665..250029,250083..250561)) /gene="Cbr-mom-5" /locus_tag="CBG_03824" /standard_name="CBG03824" /product="Protein CBR-MOM-5" /note="C. briggsae CBR-MOM-5 protein; contains similarity to Pfam domains PF01392 (Fz domain) , PF01534 (Frizzled/Smoothened family membrane region) contains similarity to Interpro domains IPR000539 (Frizzled protein), IPR020067 (Frizzled domain), IPR015526 (Frizzled-related)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WWU4" /db_xref="InterPro:IPR000539" /db_xref="InterPro:IPR015526" /db_xref="InterPro:IPR017981" /db_xref="InterPro:IPR020067" /db_xref="InterPro:IPR036790" /db_xref="UniProtKB/TrEMBL:A8WWU4" /protein_id="CAP24650.1" /translation="MYRPLFIFFTIFLGCSSSDQRLSSTSISSMSGLSSPRKCELISI PMCKNLDYNQTVFPNLLGHTTQSEANPAISQFNPLIKVKCSEDIRLFLCTVYAPVCTV LEKPIQPCRELCLSAKNGCESLMKKFGFQWPDQLDCNKFPVSDLCVGKNSSESSSSKK SSSDVTFGVSTIANEVVLSPKICPHVMHTTSGSHFSLPLLSGRLPDCSLTCEADNQVP MMFDGRVRRILRIWTAAWSVACFVCSLFTLVTFLVDLSRFAYPVRPILYLAFCYLAIS LVYMIGVVGEDGFACGTYGSTPKILVTQGGENVGCSALAVVHYFFFMASCAWWLVLCL AWFLAANLKWGAESIAALSPYFHAMCWGIPAVLSVTVLVTNSVDGDVFTGICSVGNLN PSALVYFFFTPIVVSLALGAVLLICGIWSMIRIRSYIKLQRADVERNISKLEKLMLRI GAFAIMYSLPTAMNASIMWYQAVHMPAWLEGWLHHRCVRLQDREDFGFTFTIDECPGD PKVAAPEIIIFLLKYVSQLVVGITCAIWVVSSKTLSSYHKAYLALSSRSPPVPNHPDQ VNLR" CDS join(253519..253576,253622..253726,253779..253954, 254005..254123,254172..254991) /gene="Cbr-tag-179" /locus_tag="CBG_03825" /standard_name="CBG03825" /product="Protein CBR-TAG-179" /note="C. briggsae CBR-TAG-179 protein; contains similarity to Pfam domain PF04922 DIE2/ALG10 family contains similarity to Interpro domains IPR016900 (Alpha-1, 2 glucosyltransferase Alg10), IPR007006 (Glycosyltransferase, ALG10)" /note="Predicted" /db_xref="GOA:A8WWU5" /db_xref="InterPro:IPR016900" /db_xref="UniProtKB/TrEMBL:A8WWU5" /protein_id="CAP24651.2" /translation="MTKPKTSRICLPFPPVSRKTDFLLGGLFSSIHVLLTTMVYHYIP DPYMDEIFHISQTRSYCSGNYTWNPLITTPPALYVISMPFCGGYERYVNSILLFFAIP AFCRFRRMFVRTDVFLTASIVGLLPILMTSSVLFYTDLLSLTSVILGFSMQNPLTSAA FFLVSILTRQTNIVWAAIYAFSVLASQTNTNQSRTENMKNIVFSVFSLWPFAGLAIGF LGFLYLNNFQIVLGDAKAHEPKFHAAQFFYMVAFCAAHAWTQILPNLPSHLRHLTDLK ALVLQAAIAGIVYKFSYDHPYLLADNRHFTFYIWQRFLSNPAIRTSIAPLYMFSARFM ATSTRNIHFFHKFLFVFATAAVLIPAHLFEMRYYIVPYVIWRLSATNNRNKILLFLEI TSQITILFIVLFLFLFKTFEWPNEPGIKQRFMF" CDS join(255465..255544,255594..255950,255998..256492, 256540..256672) /gene="CBG03826" /locus_tag="CBG_03826" /standard_name="CBG03826" /product="Protein CBG03826" /note="Partially confirmed by transcript evidence" /db_xref="InterPro:IPR001841" /db_xref="UniProtKB/TrEMBL:A8WWU6" /protein_id="CAP24652.1" /translation="MTRPVQRQRSRRSAIVSLEEINVQEQLAEMLRYEQEMRDRAFAF NLQREEGNQQNAPDVVPTPPPIPAVASPAPAARPVQQVSPSNSRRSGRISPSGRQSAG RSANANDSGIRDAPGPIRNSQRTRTLVRQVQQTGTPNRRAIPARIVDISSSSDDSDGD VLLVDSGDSSISSVSSGSSNSSNSSGSSSSSDDSSRIRVQNSTSPNGSSSESSSRSDD EPTSRARIQATITLNGLPRTPSVMHAARPNSDSGVGVLISGDSSNQPSTSRGPTTPVR TGVLDPTWGDCTMCFEVPIKPQGCNRCRQIIGCATCVISWFKAAHREAACPLCRNKWA RKPDVSLMTTIERRRRGARA" CDS join(257887..257939,257989..258419,258474..258540, 258586..259293,259341..259433,260687..260888) /gene="CBG03827" /locus_tag="CBG_03827" /standard_name="CBG03827" /product="Protein CBG03827" /note="Predicted" /db_xref="InterPro:IPR001841" /db_xref="UniProtKB/TrEMBL:A8WWU8" /protein_id="CAP24653.1" /translation="MASTSIAAMSTEEVDEQRRQLDRIEQERTDRELAQRLYQEQFET PPGSPQNQPSTSHYRLPTPPIPSNSRRRQVGSNQQPRAMNPSRRTPTSSADRPARRTT SRGGRASRGERGGARRGSTSAATTSTRRGTTTRQRGTSNRGAATPARGRRGRPRTATA NRPQLRFNGDQLELQNGGQLINVTGQAWMPDSDEDSDFEIGDDVDDEIEDEVDDRMDG VEEEEDSDIEIIGTIEPEDRRRRRNQPASSATARRRANQPTSSATARRRQNQPSTSSA VRRVVNQPAAARRRVNQPAISADYIRSLLNPNLMRDDPRTDPLYRAGRVVPPNDDEEE RDWSDLEDVMGDLDDEDGLSLSDDDDDDDLVVDGPIRVARNNIAQPIFQEDAGFYNRE LDLWHNDDEFRVPPANIPKQKNGKPVEPDPTWGDCTLCSNPPIKPQGCRKCLQFLGCA HCVRRWHGARASSYERPNCPLCRAEWSCHASGTSMMATIEKNRLKKKEKEKKKAASTS TAGTSTSSV" CDS complement(join(262067..262249,262333..262410, 262457..262802,262849..263276,263322..263805, 263854..264530,268085..268189)) /gene="Cbr-sqv-5" /locus_tag="CBG_03828" /standard_name="CBG03828" /product="Protein CBR-SQV-5" /note="C. briggsae CBR-SQV-5 protein; contains similarity to Pfam domains PF02434 (Fringe-like) , PF05679 (Chondroitin N-acetylgalactosaminyltransferase) contains similarity to Interpro domains IPR008428 (Chondroitin N-acetylgalactosaminyltransferase), IPR003378 (Fringe-like)" /note="Predicted" /db_xref="GOA:A8WWU9" /db_xref="InterPro:IPR008428" /db_xref="InterPro:IPR029044" /db_xref="UniProtKB/TrEMBL:A8WWU9" /protein_id="CAP24654.2" /translation="MNVFITQTIITVILVNVSSPRLLHWSPPPPSKPPKRSNCRMPIS RSTFTIILGILFGLSATHYLTTLKSLTDPVICGPEQQVSRSEELDIISLRADADVFTR SQSLPGHRRGLILVAIMTAAKYVDTRAYNVWKTWAQHIPGRVMIFVAEGTESIHEDMP LIRLKGVDDTYPPQKKSFAMVKWLAENMADEYDWFLRADDDLYIRGEELAAFLRSVDS SQAHIIGQAGLGNSAEYGLLALGSTDNYCMGGPGIVMSRETLLKVSPHLETCLQHMLT SHEDVELGRCIRKHVNVACTWNYEMQKLFHNNQSAIKESYAKNMKELKDAITLHPIKD PAVMRKVHLRNREIKLREARAQRSLLSSELSTAKAQTLVRMTPNRTIDLTPWDYINNN KILFCADRVNCPRHTVDLSIRTEIADTITQLFDEFNTNARQRGRVLQFQSLQYGYMRV EPTKGVDYVLDMLLWFKKFRPPNRTTISVRRHAYVQQTFGKLRSLAEGVFRSNMRANS TLIEDPTLHMIMPLRGRAAIFGRFAQHLKSICARGGDDLAVSLTIVLYSSEDEMENRE TIEMLRSSHIPVSVIEMGDVAFSRGIALMRGAETLPANALLFFTDVDMLFTCDALKRI KSNTILNAQIYFPIVFSEFSHESWSENDKLLADAFHYGRGRGYFRHFGYGLAAMYKAD LMDIGGFDTKIEGWGKEDVDLFEKAIKNGRLRVIRSPEPGLVHIYHPIHCDENMPTAQ KDMCHGSKAASLASIDTLVEQIAQYA" CDS join(273957..274154,274206..274325,274797..274918, 274964..275091,275135..275301,275347..275700, 275749..275907) /gene="CBG03830" /locus_tag="CBG_03830" /standard_name="CBG03830" /product="Protein CBG03830" /note="contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WWV0" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/TrEMBL:A8WWV0" /protein_id="CAP24655.2" /translation="MAVSSTYEKEKPKEKVEVLARACQNFEQLAVKLRSTTILDEFDI LYDMGKYQLVVDGQKTLDEAIKHNGKKLVVEFLLQQCKETAILPVNSGKIIGIPEQDM QNLKIHVSQSSNAGSLAGKSYGIRSTASKYSEKIRSFPGRYNLGRKIGEGTLGSVYIA ESKKGGTYAVKIIPKHGRHLPQEADVDYLRMLRHERIVEYMYIIEPSGTNDIHVLMEF MQSGSLKDYIDRNGAMHHELVKAYTKQILEGLDFLHSKNIIHQDLKPANLLLKNTHRE RLIKIADFGSSRFASLKKARPGQQGRTPKYTDPGVSLGRDAAGRKSDIWSLGVIVIEM YTKSYPWNIEKEHPITIPRILDETPPKILKHDNEKIDDDLVNMAMMMLSPISQRPYAS TLLELPVLEESQDASDSDDDDFF" CDS join(276143..276252,276482..276544,276597..276955, 277002..277102) /gene="CBG03831" /locus_tag="CBG_03831" /standard_name="CBG03831" /product="Protein CBG03831" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WWV1" /db_xref="UniProtKB/TrEMBL:A8WWV1" /protein_id="CAP24656.2" /translation="MDMFNTLRDTFSSVQAELSTGVEKLRMNVTANMAQQKVSNESVN EVLNTSAGNELLQNFQNLITEVEENGAEGGRLANLCSTRMGRCQQMCKEKADAVMEID DFLRNSAEFDKKIREINSQIIKLTRFCNQTEQAMTYLEALCEVAHTEGEVDLIRQQAR SAATIVQIECDSPSVLTSAALRTRPEDAAKAQQEEMMLEEFLSSKNMQLP" assembly_gap 277855..277864 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(278610..278706,278852..278987,279119..279290, 279342..279740,279787..280164,280262..280375) /gene="Cbr-epg-8" /locus_tag="CBG_03832" /standard_name="CBG03832" /product="Protein CBR-EPG-8" /note="C. briggsae CBR-EPG-8 protein; contains similarity to Pfam domain PF10186 UV radiation resistance protein and autophagy-related subunit 14 contains similarity to Interpro domain IPR018791 (UV radiation resistance protein/autophagy-related protein 14)" /note="Predicted" /db_xref="GOA:A8WWV2" /db_xref="UniProtKB/TrEMBL:A8WWV2" /protein_id="CAP24657.2" /translation="MDSLRATESKSSPVVLHRIRRHSHTVTGVPIPGIAADGIGSPTD HAHTPPGVLTKIDTIQTKKSSIGGSGGVLTAQFSGDQRRMICKNCNKKINCWCKKCTL EKLKLYSRRENITQRFEEKERLQSEILRIIEPTESLKEQITQKEENLMKLRVAVESAK MRIAMKQNEVNKLDAAQQHKPAQFETVFNSQTNFLARAKVKKEEKAVVLAKIEDEIAK KRRQYCIHACHIFPVQVYDVNVESVALKSKNSKNWAVVNDSELQTGLRIAIRNSYIND KLRAKLANQLSNGTITLPLELHAPFAAFTNTLQLVHLLSVIFNFRPPETLSHHDLCIR ERWTKESLNRDWSTLCDAVIYLCVFIGMPPAKLKYIDPHHNLIALASFVVNDYNNIIR IGSRPMCDLSEVHAMIEAQRPEDYSKKDELDESWTFVDY" CDS complement(join(280578..281136,281209..281249)) /gene="CBG03833" /locus_tag="CBG_03833" /standard_name="CBG03833" /product="Protein CBG03833" /note="Predicted" /db_xref="InterPro:IPR027267" /db_xref="UniProtKB/TrEMBL:A8WWV4" /protein_id="CAP24658.1" /translation="MGKSKSGEGNKWLKDRGEFDEEILSLADDASIIFENTGDLLKSM KNFAGSVGEQEKKHPYGKGSSAARTYGGGMKNSASAFTRSGDQFDKLFAACSAFKDHI NSAILAKLISFKDIECKDIDQHMTQLKKAQKDYANKKGKKNPDPVMVEAAETSLKKLL EEAKGTLTKFNKVGCELLTQLSTDMKTGFDAYCEAGTSA" CDS complement(join(281450..281663,281711..281853, 281935..282237,282290..282355)) /gene="CBG03834" /locus_tag="CBG_03834" /standard_name="CBG03834" /product="Protein CBG03834" /note="contains similarity to Pfam domain PF01852 START domain contains similarity to Interpro domain IPR002913 (Lipid-binding START)" /note="Predicted" /db_xref="GOA:A8WWV5" /db_xref="InterPro:IPR002913" /db_xref="InterPro:IPR023393" /db_xref="UniProtKB/TrEMBL:A8WWV5" /protein_id="CAP24659.1" /translation="MSEKSSLTIHGVTDTLEEDDEKYTDALQTAGDVFAEVEALFDEE NYEKRNGWFKDESNDEGDIVYAKDTRHGRMVRISTELPMPPDFVMKETWDGMETLPEW NQNINFAGVIASPTPNFDIVTYGNNDVLVVSGREFVSARIWRKVDDGYILASRSVTVP SFKSKHKGKVRAHLHMAGARFRVNPSNPETTLCDVVMLAELKGFLPKMLVNQVIGRIM LMDTVTNRRHFQDLKAKRDNNDD" CDS complement(join(282953..283054,283108..283142, 283278..283409,283454..283589,283640..283726)) /gene="CBG03835" /locus_tag="CBG_03835" /standard_name="CBG03835" /product="Protein CBG03835" /note="Predicted" /db_xref="GOA:A8WWV6" /db_xref="InterPro:IPR029063" /db_xref="UniProtKB/TrEMBL:A8WWV6" /protein_id="CAP24660.2" /translation="MNRDVSGNITFLGVATGGLMSFFSTYFKNLKLTGIDIDPQSEYL AKKWFGYRDTKNSKILIGDGAEHIVEMARREETSDAVLVDACHNHAPPDGIYCPVEAV RTPEFLKSLSAVIGTKECHLGSNHLGNAFIMCSNNRIDQSTVDIPTVRSFLKNMRIDG FLV" CDS join(284593..284771,284819..285243,286341..286651) /gene="CBG03836" /locus_tag="CBG_03836" /standard_name="CBG03836" /product="Protein CBG03836" /note="Predicted" /db_xref="InterPro:IPR027267" /db_xref="UniProtKB/TrEMBL:A8WWV7" /protein_id="CAP24661.1" /translation="MNDKLFSQHFRNSMDRDDMRRWFKKGHGSGTVAARHMLARGTGV VFQKHFQRGTVPFGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLADDASII FENTGDLLKSMKNFAGSVGEQEKKHPYGKGSSAARTYGGGMKNSASAFTRSGDQFDKL FAACSAFKDHINSAILAKLISFKDIECKDIDQHMTXLTLGIGAAPAFARYPAVAPGLC AWKASMLTITPRTRRNRDMLFAMTTGSFKRDTASKRHRAALKVPLEHHTRAPSKHVAC RYRAAAVPFLEPPAHIVSIHRVSKMLRK" assembly_gap 284772..284921 /estimated_length=150 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(286804..286838,286934..286941,289206..289478, 293324..293388) /gene="CBG03837" /locus_tag="CBG_03837" /standard_name="CBG03837" /product="Protein CBG03837" /note="Predicted" /db_xref="GOA:A8WWV8" /db_xref="UniProtKB/TrEMBL:A8WWV8" /protein_id="CAP24662.2" /translation="MDFREDNSSKEIRKADDASIIFENTGDLLKSMKNFAGSVGEQEK KHPYGKGSSAARTYGGGMKNSASAFTRSGDQFDKLFAACSAFKDHINSAILAKLISFK DIEWLLVFLYACLVVAFATTSFGL" assembly_gap 286999..289201 /estimated_length=2203 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(297834..297897,297952..298170,299460..299528, 299645..299730,300550..300634,300686..300847, 301374..301486) /gene="Cbr-zig-1" /locus_tag="CBG_03839" /standard_name="CBG03839" /product="Protein CBR-ZIG-1" /note="C. briggsae CBR-ZIG-1 protein; contains similarity to Pfam domains PF00047 (Immunoglobulin domain) , PF07679 (Immunoglobulin I-set domain) contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR013098 (Immunoglobulin I-set), IPR003599 (Immunoglobulin subtype), IPR013151 (Immunoglobulin)" /note="Predicted" /db_xref="GOA:A8WWW0" /db_xref="InterPro:IPR003598" /db_xref="InterPro:IPR003599" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR013098" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR036179" /db_xref="UniProtKB/TrEMBL:A8WWW0" /protein_id="CAP24663.1" /translation="MKNLFLITSLLIGSVLALAGRGSKSALVLVAARSTEAHPIHATD PITIWCAPDNPQVVISKATIIRLRDNEKLEPTLNPTKKNATYTFGSPSINDAGEYKCE LETPHGKISHRVSIYSRPIVHSHEHFTEHEGHEFHLESTGTTIEKGESVSLTCPVTGY PKPVVKWTKDGAPLALSSSVSMEGTTVILSSVNYTDAGTYSCEAVNEYTLNGKTSKML LVVDKMVTVRSEYQWVYPLAVIVITLVLLTTIIIFCEWRNNHAARKA" CDS complement(join(302250..302288,302695..302784, 302829..303056,303169..303336)) /gene="Cbr-ensa-1" /locus_tag="CBG_03840" /standard_name="CBG03840" /product="Protein CBR-ENSA-1" /note="C. briggsae CBR-ENSA-1 protein; contains similarity to Pfam domain PF04667 cAMP-regulated phosphoprotein/endosulfine conserved region contains similarity to Interpro domain IPR006760 (Endosulphine)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WWW1" /db_xref="InterPro:IPR006760" /db_xref="UniProtKB/TrEMBL:A8WWW1" /protein_id="CAP24664.1" /translation="MRGEAGELAVSSGEIATGALSPEKQQEQELMGKLAATGKLPARP ASSFLQKKLQQRKFFDSGDYAMDKSKAGTGLGSKPHPLAGGPQPPAPPPAAIQKSPAP ATSPSPSASPISQQTNRPSSERNSDDDNLQIPRPDTVPQRKASIINPSVHCKLSPAPH VQHHDAASPSATNE" assembly_gap 303906..303915 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 306646..307645 /estimated_length=1000 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 309917..310320 /estimated_length=404 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 311350..311749 /estimated_length=400 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(311801..311971,313335..313451,313495..314010, 314066..314336,314385..314547,315210..315288) /gene="CBG03842" /locus_tag="CBG_03842" /standard_name="CBG03842" /product="Protein CBG03842" /note="Predicted" /db_xref="GOA:A8WWW2" /db_xref="InterPro:IPR029668" /db_xref="UniProtKB/TrEMBL:A8WWW2" /protein_id="CAP24665.2" /translation="MATVSCSPSLADIRALQADNLDRLRDSLQQINIRDVVPLLVARN VLRSYEMGALYAKMDTVVVLALVVLTSVFILSLLILVITCQRRRKSRRSKSKILIPFE KPPNRFSRNAVAVDSVDEIETMEHLGELLEELLDKNPWLYEARGIMQHVVAILTITKT ITEKLSDVQLPTTPSPFHDAINMAMRNIYPRFDDLVESISAQPIDMRLLEARALSLGT VCWSLYLPYTLLDAQNKALIQTPLNEMNAHLVTIRTAAHLVAMADKGAEDKLDIVDLK DHLMRMRRQIRGDMLLEDEDDYETEDDLHNDIANMADHDDEEEEHHDPDGLVDKTILG SLHDHEKMPLVESEAIIDMIELRRVPEQLQKSNGVPDGNHKHTPIHHMHHHHHHHPHH MTNGSLNTVEEINEDDHHGEGTSTSCSSSSTSSASSTSAHPIDPKS" CDS join(316630..316671,316724..316826,316875..317962, 318016..318561,318611..319225,319324..319659) /gene="CBG03843" /locus_tag="CBG_03843" /standard_name="CBG03843" /product="Protein CBG03843" /note="contains similarity to Pfam domains PF03144 (Elongation factor Tu domain 2) , PF00009 (Elongation factor Tu GTP binding domain) , PF00679 (Elongation factor G C-terminus) contains similarity to Interpro domains IPR000795 (Protein synthesis factor, GTP-binding), IPR005225 (Small GTP-binding protein domain), IPR004161 (Translation elongation factor EFTu/EF1A, domain 2), IPR000640 (Translation elongation factor EFG/EF2, C-terminal)" /note="Predicted" /db_xref="GOA:A8WWW3" /db_xref="InterPro:IPR000640" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR009000" /db_xref="InterPro:IPR014721" /db_xref="InterPro:IPR020568" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR035647" /db_xref="UniProtKB/TrEMBL:A8WWW3" /protein_id="CAP24666.2" /translation="MESLETALKLAAASKPAEHIRNVCLVAHVDHGKTSFADSLVSAN AVISSRMAGKLRYMDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTS ALILSDIALLLVDVIEGICSQTEALIRQVIRNGQVMILVINKIDRLRVELKMSSSEAY QHMARLIEGVNSCISQVLGGIVLEDDTWGNIEEAEEKLHFDPAKGNVIFSSALHSYAF GCEDFATLAAEKMKVEKSILLPAMFGDFWIDSTGTIRDSAAAKNKATMFERIVLEPLW KLHDLGLVDNDVTLLSEAAKKLGFTLKSRRANEAFDELMRSWLPLPKASFRAVARAPN VRSTFETQHRLDHLTGHRLDHPLRPFVLGCDSTRMTIVFVVKLLQTEDKSLNSRRAIC RILSGTLRKGDKLFVLQQHGSSEVTSTKIDRISILRGRDTIPTDTVTSGMVCAIDAEI LLQNTTLCSESDYPCLKIGSQTGEALVRVSVSTQQLDDMVELREKLKLLALLDTSLKV MELENGELAMVTAGEVHLQKCIKDLNDLGLVDLDVSEPIVPFMETVMEDVNLSAPQIT EQETDCRIRDALHIKLRIAPLGSTVIEFLGKNAILLFAIRRGEADQTEVDDFQRKLTL VCTESLPTLKGTWWYRKPKDLIETMIERIWAFGPDRARSNILFNNVESYDRDLIWRKT EFGVRRYDQALVGGFELFCNSGPLCNEIMHGVAVIVEEWTVDEEDGAIGGQMMSAMKA TCSAAAKKLALRLVAAMYKCTVTTASQALGKVHAVLSQRKSKVGEGSWISFGWSVLSP VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDPYWT PTTLEEVEEFGLKGDSPNHARGYMDAVKRRKGLPTEDLIVESAEKQRNLKKNK" CDS join(322087..322182,322424..322565,322774..323123, 323169..323732,323778..323888,323968..324165) /gene="Cbr-nhr-49" /locus_tag="CBG_03844" /standard_name="CBG03844" /product="Protein CBR-NHR-49" /note="C. briggsae CBR-NHR-49 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR001723 (Steroid hormone receptor), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)" /note="Predicted" /db_xref="GOA:A8WWW4" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR001723" /db_xref="InterPro:IPR013088" /db_xref="InterPro:IPR035500" /db_xref="UniProtKB/TrEMBL:A8WWW4" /protein_id="CAP24667.2" /translation="MDLVDPLAEPCAVCGDKSTGTHYGVISCNGCKGFFRRTVLRDQK FTCRFNKRCVIDKNFRCACRYCRFQKCVQVGMKREAIQFERDPVGSPTGGNSLNGTPF KKDRSPGYENGNGNNSGVGQENMRTGATQPSVIDSLMDMESRVNQEMCNRYRKSQIFV NGNGTAGNEAEAASIQQVASDGSAFAPPNRPCTTTEDLNEISRTTLLLMVEWAKTITP FMELSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFK TSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNASQIMIRDARNRVL KALYAFILDQMPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEF ILDDINDHSAAPASLQQHLSSPTTLPTNGVSPLNASGSSSGVPSISSIAGITPTGLLS ATLAAPLAIHPLQSQDSLLNGNLLLNSVIEQKPVIE" CDS join(324645..324679,327183..327297,327535..327622, 327669..327754,327801..328051,328099..328195, 329769..329975,330017..330193,330245..330368, 330412..330635) /gene="Cbr-inx-20" /locus_tag="CBG_03845" /standard_name="CBG03845" /product="Protein CBR-INX-20" /note="C. briggsae CBR-INX-20 protein; contains similarity to Pfam domain PF00876 Innexin contains similarity to Interpro domain IPR000990 (Innexin)" /note="Predicted" /db_xref="GOA:A8WWW6" /db_xref="InterPro:IPR000990" /db_xref="UniProtKB/TrEMBL:A8WWW6" /protein_id="CAP24668.2" /translation="MPRTPPPPPRRPMVFAEIVGTLSFLQPQADDDIFDRLHYYYTTT FLLLTAVLISLKMFGGRPIECWLPAEYKSSWEDYTEMYCWARNTYVTAFEDDNLPEVV NREYTMVSYYQWVPFFLVYVAFSFYAPCLLWRLFYDKSGIRLKDIMAFANDKANVVPA QRQANIRGLSAHLSSVFKHRFRIGEKHPYHHKVFKIFNVRYYESYLTYLYLGIKGMFL MNVLMQMYFMSRFLELDSHRYYGYGILYDLIMGRGWKESSNFPVVTYCDMQIRILGHV QRHTVQCVLVINIFTEKIFFILWLWYTLLSFISFGSILSWIFGSIPFNQRRQFVARRL ELADVNFEKSRYKHELDEFVRDYIKIDGIFVLKMITIHSGILMCTDIVDQMWDQYLEE SGNQVIREIIDEKSFGDDYDRSASAGGLSIDPGIRRKTSVLVPLMSREDLNVDQSPTT PTPQFLRPPSSRMTANV" CDS complement(join(333721..333792,333839..333937, 334384..334489,334539..334718,334774..334919, 334965..335120,335173..335381,336011..336167)) /gene="Cbr-nhr-69" /locus_tag="CBG_03848" /standard_name="CBG03848" /product="Protein CBR-NHR-69" /note="C. briggsae CBR-NHR-69 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR001723 (Steroid hormone receptor), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)" /note="Predicted" /db_xref="GOA:A8WWW7" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR001723" /db_xref="InterPro:IPR013088" /db_xref="InterPro:IPR035500" /db_xref="UniProtKB/TrEMBL:A8WWW7" /protein_id="CAP24669.1" /translation="MVEEICHICNDKSTGKHYGAISCDGCKGFFRRSIRKRYHYTCRF EQNCDVTRNKRNACRACRLQKCVKAGMKSNAIQNERDAIGKRKKTPEEGKEDLIDQLV QAEQMCQQLRSSVIKNTSSLAPYDCGKVKWNYEDARSATLDDIGKSIHQQLVLFIEWA KSLPQFSFLAQVDQAALLKGGAASIIVLGVAYRSIHLGMDDTICLANDTLLPKEHATQ VGDINCVVGRILAELVNPMRRLDMDLVEYVALKAILFFNPVVRECNDQTSVENARYAC LRSLQRRCTDKAIVNQEDDSQDCRSGKLLLLLPSLQAIAQQLVEDVQLARLFGLVNVD SLMEELILNDLKPSDPQILQTSLASPVNTPSVKAEVEVEE" CDS join(337859..337888,340002..340061,340107..340213, 340798..340907,340954..341077,341129..341197, 341269..341387,341429..341577,342357..342707) /gene="Cbr-nas-5" /locus_tag="CBG_03849" /standard_name="CBG03849" /product="Protein CBR-NAS-5" /note="C. briggsae CBR-NAS-5 protein; contains similarity to Pfam domain PF01400 Astacin (Peptidase family M12A) contains similarity to Interpro domains IPR001506 (Peptidase M12A, astacin), IPR006026 (Peptidase, metallopeptidase)" /note="Predicted" /db_xref="GOA:A8WWW8" /db_xref="InterPro:IPR001506" /db_xref="InterPro:IPR006026" /db_xref="InterPro:IPR010909" /db_xref="InterPro:IPR024079" /db_xref="InterPro:IPR034035" /db_xref="UniProtKB/TrEMBL:A8WWW8" /protein_id="CAP24670.2" /translation="MLRATDGVFTMDIKQILLSLTLFVSVADSRGRRINIYGAENGHS DIVQLRGNSGAQQVYSSPIREKRPKFRNALLSNSPLKWSKMQDSDGNYLIPFVISGSY DSVEQKIIKTAMEKIAANTCIRLIPRTNQPDYAEILNKKGQGCYASIGRFPGKNVVML ESNDDQSCIQEDTVIHELFHVIGLWHEHMRADRDAFINVLYKNIEQAQYPQFEKLSSR DATTYNVPYDYKSVMHYDETAFAKPGKISMMTKDSSFQKVIGHPRDASSNDYKKVCAI YHCSKCMNQNFDQLVISDNIDLRNPVITNSPSLQGDSSDCTDRLGICPMLKSREMLNC KVMSTFCCLSCSAPITTTTPSSKSSDTSLWQRIKSIFQ" tRNA 337915..337986 /gene="CBG28813" /locus_tag="CBG_28813" /standard_name="CBG28813" /product="RNA transcript CBG28813" /note="C. briggsae predicted tRNA" CDS complement(join(342846..342973,343123..343255, 343299..343695,343794..343909,343957..344143, 344189..344297,344368..344626,344672..344750, 344797..344879,345276..345367,345430..345586, 345798..345815)) /gene="Cbr-oct-1" /locus_tag="CBG_03850" /standard_name="CBG03850" /product="Protein CBR-OCT-1" /note="C. briggsae CBR-OCT-1 protein; contains similarity to Pfam domains PF07690 (Major Facilitator Superfamily) , PF00083 (Sugar (and other) transporter) contains similarity to Interpro domains IPR011701 (Major facilitator superfamily), IPR005828 (General substrate transporter)" /note="Predicted" /db_xref="GOA:A8WWW9" /db_xref="InterPro:IPR005828" /db_xref="InterPro:IPR020846" /db_xref="InterPro:IPR036259" /db_xref="UniProtKB/TrEMBL:A8WWW9" /protein_id="CAP24671.2" /translation="MSFQAMDTFAEISQHILMSSAKPPDFDYVLEQVGDYGTYQLVFF FIICLPASLPSAFSAFNIPFVVGNPPHSCRIPEGKEYLRPLTNDTQILSCKQYNETQI NVFQAFTSAPVDTYSDRIDLVPCQNGWDYDNSTYLDSLVTEFNLVCDQQSWVEISTTS FYVGSFIGNCLFGYIADKFGRRRSFFVILIVLVVCGTANSFAKDIESFIILRFFTGLA FPALFQIPFIICMEFMGNSGRIFSGLMISLFFGAAMALLGVVAMFIRRWRPLTFFCNA PFAVLFCYYFFLPESPRWSVSVGKWAEAKAQLKKIAKMNGKSDVDVNELVDSLKNHQN AAEEEETKRSHNVTDLFKTPNLRKKTFIVTYIWVMNAIIYNGLTLNVSNLPVDDYWSF IINGAVELPGYFVVWPLLQCAGRRWTLAATMIVCGIGCVSAMFVPDGYPWLVASASFI GKFGVGSGFAVIYIFAGELYPTVVRAIGMGMSSMVAGSGLLLAPHIVNLGKIVKILPL LIMGLMALSAGILTFFLPETLGAPLPMTIEDAENFGKKPDADSGMFTQAAKKRESQPL LEPFTPMERRRRSSRLMNI" CDS complement(join(348028..348352,348394..348642, 348691..349079,349469..349612)) /gene="Cbr-col-64" /locus_tag="CBG_03851" /standard_name="CBG03851" /product="Protein CBR-COL-64" /note="C. briggsae CBR-COL-64 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)" /note="Predicted" /db_xref="GOA:A8WWX0" /db_xref="InterPro:IPR002486" /db_xref="InterPro:IPR008160" /db_xref="UniProtKB/TrEMBL:A8WWX0" /protein_id="CAP24672.1" /translation="MGYGTQVASGVTVICAAFLIPMLTCTVSLFYEVAQMHMQAMDGM EEFKLYANGAWEDMLPAARLPRGVTTTPNDSKKDPCDCDTGPAINCPAGPHGPRGRPG RKGADGPHGQQGRKGPDGMDVFKEMIGPVECIPCTAGEPGPPGEDGPAGEKGEDGQPG SPGKPGEDGEPGTDGEPGFIGFPGFPGPPGEDGKQGNNGTRGVGIPGPAGPPGPEGEV GMPGVTGETGENGQDGPKDQRDHLEMQEIERKRVLMEFRENKEFKPLHFLLGYCPCPR RSASRSGTSLGTPLTDTIVPSPTIFPLTSSTSTTPTLSPSVPTILPTRSPKSREEPHQ VPPNPSSSENPETGESDNSQNSGDTEEYKINFIR" CDS complement(join(350054..350189,350365..350480, 350529..350640,350750..350874,350935..351153, 351203..351584,351629..351755,351915..351994, 352040..352138,352247..352410,352609..352686)) /gene="Cbr-mom-4" /locus_tag="CBG_03852" /standard_name="CBG03852" /product="Protein CBR-MOM-4" /note="C. briggsae CBR-MOM-4 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WWX1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="UniProtKB/Swiss-Prot:A8WWX1" /protein_id="CAP24673.1" /translation="MDTSPHSKPSSSSASQSSHSPSPAPVTAPRKTRDSGLCMTQDIP EIPTHCIDNLNSHQLGRGTYGIVEKTRYRRSRNHEYRPAAIKYSSPIHLATLIREAKV MWALRDHSNIIKIYGLYRDARHGQGVVMEYMDCGSMSELIYDRKSIDYTIDHVASWLY QMASAVNTFHRNDQVHRDLKLQNMLLCDRYRTMKLCDFGTFTAMHQSMTSNRGTPITM APEVFRCEEYNQKSDIYSIGIIMWQMIARNHPYNRNLSVPGLLYNVATASLRPPELDC NPILSDFYKQCWHDDPVSRPTAAECLQYFTALKTEYPNGNVPLADANTNRPVETPPPR VHRPSGLGSASGSGLGTNGRTPTASNHLNAPQAVNTHRRNRSETIQMKPELPYPVMPG EVAASSSGAFRGPRSQSEAKNLRDAGRSQSGQRHPHRNAPPIPIDDRRDSNESNEKDA IFMELLRNDDTRPVDPDARDEASLDIFHQHCSSNKEYADALLLKKEVLRAKHELLSRW PQHQRHVELLERQNYLEQEIAKLEYNSDDDFSITERL" CDS join(353672..353737,353952..354033,354084..354324, 354394..354660,354705..354822,354866..354967, 355017..355121) /gene="Cbr-lsl-1" /locus_tag="CBG_03853" /standard_name="CBG03853" /product="Protein CBR-LSL-1" /note="C. briggsae CBR-LSL-1 protein; contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:A8WWX2" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR036236" /db_xref="UniProtKB/TrEMBL:A8WWX2" /protein_id="CAP24674.1" /translation="MSLLDDSRDDSYAGDEYGGDLSYPYQHEQPPPYAVHQCNVCNKI FMNYKGLQQHSVIHTDTKPFLCEVCGRGFRFKSNMFEHRTVHTGYTPHLCPFCGKQFR LKGNMKKHMRTHVTNKEELEAAYRPYSSNRRQTAIIPENALVIRGSPVPYFPVEKRRM PLKLSLGTDSSDWVNLIRRNKLLPMMALNEKLLRANMRLGGPITFYQMIENSKPLELE MFHCPICKCECAGKEICEEHMYVSHGRKPEDFLDDSRYCYKCMRMFVDKEMYDQHNSY HGRVHMMIANRELENNTVPPEVDMSQCFYNMLANHTNDLVVSKPSSPSIL" CDS complement(join(356260..356604,356659..356731, 356780..357074,357236..357355,357755..357863, 357961..358080,358487..358729,359025..359185, 361267..361514,361660..361706)) /gene="Cbr-ekl-2" /locus_tag="CBG_03854" /standard_name="CBG03854" /product="Protein CBR-EKL-2" /note="C. briggsae CBR-EKL-2 protein; contains similarity to Pfam domain PF01530 Zinc finger, C2HC type contains similarity to Interpro domain IPR002515 (Zinc finger, C2HC-type)" /note="Predicted" /db_xref="GOA:A8WWX4" /db_xref="InterPro:IPR002515" /db_xref="InterPro:IPR036060" /db_xref="UniProtKB/TrEMBL:A8WWX4" /protein_id="CAP24675.2" /translation="MHDARCTTKPTPPSRWYPSIAYFYLILPKIMSSTTSTNLLENPY DSNVVNLMSILMKSSQSLPTPPDTHTDGSISPDSTASDCSDSAGPPAKRRRKPETKDI VRVSEGELHLQPTCSSSDTETPNKENQKEDEMTCDTTTATTSPDIKTNEQTAESADVV TSSSSIASSNSGIPSFLYSQFLTPSFQKHLEILTSGNFTSQHSETSPSDVESLTSSDG GVVAAQTSSCSSSSKSPLNMMMVSSDFPKSPISASTPPHSGSETCGSRVMSPLNQTSL TDELSISTTPTIPFTPNGSIPSPGTGYSWSIRREGKLACPTPGCDGSGHQTGLYTHHR SLSGCPRRPDKNVIQMLALRQETVLRCTTAGCSGKGHVNGNRTSHRSLSGCPIAHQEK LARKGLKATPNRTKTPPKGINLGDECPLDLTLTGLPAGLSTQQLLAAAQAGFIPSGQV MDVFLKQFAKPLATLEEESKKENEMEIDVETTTDEIPVLVKEDPVKCDSPAVVVAPIP EVPSTPTKVAPAPAEVKMSPSSLLLGMPGLSETLMKMTGPQQPVQFPQFHSPQTAYFG NQNALLAQLMLAQFQSQQGF" CDS complement(join(373745..374047,374093..374278)) /gene="CBG03858" /locus_tag="CBG_03858" /standard_name="CBG03858" /product="Protein CBG03858" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WWX6" /protein_id="CAP24677.1" /translation="MAAAVMQRKGYDIVELSLSEDDDPVKEKKKMKTKEKKGSTTDSK SKESKETSKEEEAEMKRLVTHKTQSLSEEVKKKEKEKEVKNKTESRKQQEKKETEMSK KVKKDESMKGSGGQGQGTPGNAQSEKKIQSKLTPAAPPAAASTPQAKPEKQKTTGCCV IS" CDS join(376201..377049,377096..377329,377376..377591) /gene="CBG03859" /locus_tag="CBG_03859" /standard_name="CBG03859" /product="Protein CBG03859" /note="contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR000980 (SH2 motif), IPR008266 (Tyrosine-protein kinase, active site), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WWX7" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR000980" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR008266" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR020635" /db_xref="InterPro:IPR035849" /db_xref="InterPro:IPR036860" /db_xref="UniProtKB/TrEMBL:A8WWX7" /protein_id="CAP24678.1" /translation="MSVAPPSIQRGPIEKEVYYHGFLPREDVKTVLKSNGEFLIRISE PRKGEQRSFILSVMHNNPPSPDEETWIKHFVIKYGENKYFIEKNAFMSVQELVDHHLK TRDSVKDEVYLLKALPRQSWELDHENIEILRKLGEGAFGEVSMGKLKFRKGGKSVNVA IKQAKLSNLTKDQIKEFMGEARVMRQFGHPHVVRFYGVAATTEPLYMVMELATNGALD SYLKKNPDLTIEKKNEMILQAAWGLEYLHSKPVMHRDIAARNCLYGDGRVKISDFGLT RSGHSYQADPNKKAPIRWLAVEVIRQRLFSLKTDVWAYAVMSWEIYNNGVEPYPGMMV AEVAQKVLTGYRMELPADLNPEIRALIGRCWADSADERPSMAEVATELQRCTGIIRPD FVALEKEIKKELMLMNNLTNKSHVRKDKKTKSKPQMPKGM" CDS complement(join(378004..378120,378191..378390, 378460..379254,379912..379970,381563..381689, 382651..382816)) /gene="Cbr-nhr-62" /locus_tag="CBG_03860" /standard_name="CBG03860" /product="Protein CBR-NHR-62" /note="C. briggsae CBR-NHR-62 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR001723 (Steroid hormone receptor), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)" /note="Predicted" /db_xref="GOA:A8WWX8" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR001723" /db_xref="InterPro:IPR013088" /db_xref="InterPro:IPR035500" /db_xref="UniProtKB/TrEMBL:A8WWX8" /protein_id="CAP24679.1" /translation="MFSTLSSSAIDDILRHAVHFSQGTTAGIAAIHHYSLPVSMPTPS TASTAQSTTSTGHGRGRRKNSTVNLICVVCGDQAFGKHYGVNACNGCKGFFRRSVWNN RQYLCRFEGRCAIAKEHRNVCRACRLKQCFVAGMNPRAVQSEREQKGSPDQNQDVEED DYKDLSSPDTCSVEIQTDADEQKPTDLAVPLPSIEAEMARFSEQLVEMHRAVCSYVDP VVKKEEPEIKMETETCATKVVFMNAFFNPGMMFPRTPLVITGERIATVQDVMDEWRRN FVLFSDWLRALPEFNQMSIQDQIVLAKNRYGSFHWWLCANWTVQAGCDGVCYSNGAYF PRQTESQCVPDVKGSSSRMFESLSIPIKELQLDETEIVLMLAVILFSDEVTELADLSQ AGKDHVRHVGNRIVRMLHHHVNSKDYGEPMEDETQNASESHAAVRIAKMMMLLSATTN LVYLTSDNIQLMEVLHVVPSEYLCHEVQLIHSHYETP" CDS join(398763..398880,399419..399649,399693..399772, 399818..399907,399954..400208) /gene="CBG03863" /locus_tag="CBG_03863" /standard_name="CBG03863" /product="Protein CBG03863" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WWX9" /protein_id="CAP24680.1" /translation="MASKLTTSSFLVIVLFVVFILPRIEGLRPRGIGLIRLPFGVSDH RSGPYLPNLYIAGNKLYHKTQPVPDVSLPGQEKHFSGHAQLNPFTHMVAVGTNNDFGD SWGAGYALQGVNFLDLNLRKNYRQYANMPHLFTDGQHQPFQNSFIVGAEIDSSKFTSH AVALDIPLPGINEMFDFQEETLEKHDEELTDIYHTRMNFPIPTTNQRFPFKAHFFERI NDIDLNMAHIIPNLNVHGIDRDKIVDQLVQNKANPTLVG" CDS complement(join(400279..400404,400453..400581)) /gene="CBG03864" /locus_tag="CBG_03864" /standard_name="CBG03864" /product="Protein CBG03864" /note="Predicted" /db_xref="GOA:A8WWY0" /db_xref="UniProtKB/TrEMBL:A8WWY0" /protein_id="CAP24681.2" /translation="MTTTESEDDEGLTPSYVYILIEFAYILMFGIVAYLMRRYNFMKT EDDAVTKHHRRHYEMMKKQQDELIEKQRTNENFLIAGDNQ" CDS complement(join(401032..401264,401313..401585, 401759..401843)) /gene="CBG03865" /locus_tag="CBG_03865" /standard_name="CBG03865" /product="Protein CBG03865" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WWY2" /protein_id="CAP24682.2" /translation="MRKTFITLQQKLREKLKVRGIPSDSEHIKENPSIRMKFLFWILV LLACSTVHCKRRVSRDEEAVSDPEKDAADLELAKTTATAFAADLMKVRTSEDIHDLTN WLSDNLIFQLCDNRLYKSHFVAFTTHALIEEEKFPVALTLEVDKAFTRGDGLSMIVKA NGFVFEENDQLILDFQKDEDGKYKLAHGTILTCRYE" CDS complement(join(402568..402951,402996..403148, 403194..403451,403495..403753,403802..403924, 403969..404240,404282..404552,404598..405138, 405191..405391,405435..405865,405910..406172, 406218..406381,406428..406593,406647..407295, 407341..407408,407457..407721,407766..407951, 407999..408388,408439..408579,408621..408731, 408800..>408888)) /codon_start=1 /gene="CBG03866" /locus_tag="CBG_03866" /standard_name="CBG03866" /product="Protein CBG03866" /note="Predicted" /db_xref="GOA:A8WWY3" /db_xref="InterPro:IPR011989" /db_xref="InterPro:IPR016024" /db_xref="InterPro:IPR021843" /db_xref="InterPro:IPR032430" /db_xref="InterPro:IPR035309" /db_xref="UniProtKB/TrEMBL:A8WWY3" /protein_id="CAP24683.1" /translation="VNAGENLKKLMEKEFVRPTKHLVLLPYFEELESAADKNLQFILN GMTAAFLTENSVEATEYTDMFVKHLRQFGLRMPKETFLKLIRFFYEALLRKDQNRDLM ITACYGFGKMMKLTRCGSFGYRDLVLDWKPVYDLYIRALNGKIKPDISTHLNEAIVPF SLFYHPESHGEIFETLLQEITIGSHIYMEQFMQNCRIFLTVEGMNEEDAKKYTVGKWI KEIWDLYLKADMNTSWTSIAVEFMSELCYFHPGAYDLSPHYNVLFTKMMRSFELTVRG GKVAVGDGQEVFSNTHLASICVYTIGGPNSSLSYFQRLMKYILFNVHPLNAGEHTEQI GSFLTDFISQFKGRLKDERLRYKKRQCSKEYYLNDSDVDAVTTSIMDVVVMLMFSSSF QDNYKLVHNLTTVNRELVAPKLLDHLYSSLTAVSEPHRLSVIIETISAIIFEVIRQPD SNYRTPQDITFDSTWLKLLEEERKNWPSYKTGSEVPEIKSHQFKSLRAHAFYIMEVFV NHINVSDVDRTAFIFKTLIVLFSSFPLMDFSASIEFHGKEMTEDDKILCLLSKRIPHL VEFTLNKILDVITCLSVVAPKCSGQSAGASISNESQKQVGEEEAVLKSGISQLVKVLF ERVDEKLRKTLFERLFSYITTVEFSNNLATELLSSLVMSAVWISRDAFRHYGEFISKK LKELITDDIQKTRTPPSSVLFYVELARPLFAATHQMILENESLLFGILEMFLSCQDST IHKCATFGVTTFLSVLLYIETEATASPENDVFAKPLQEWNPIKYWAKCSEYKDTNIRW YIPAKPEIECAERISNKFFFPYIAKLKEMDHDRDTFRRIINHLMTVMQDLKVLQHPES LRPITDIYTPFCLPIPSSSLGVSCSLEYELKGPNGENIREEIVSMIEKISKKIQDPVS LTNLSILAFKCLGKKRASTMDSSVESFLTDAHVVMVDSTYGNAVKSSQHTMDTIAFVK HQRAMSLILELGWLKDENSTIRLDVWDAVLRIKVFDELKICVLFEEICKEILALNKLS VYWRGSRETHEERNKKVAAIAIGLMTNSDFWKQFLDDDSLKKQTDVWFNYQITKETSK KELVEMLFKKHIKNQNHHHTRENLARTMVYQTQKEGCDERTIALLLSQLNDEQYYCRK EAREWLTHWMYETKPKSVRIDLPTPKRIDHGVSMESGIREDNLWLVYDSENLPNTEQK WNEMIFVERGKGSCRWEKTISVVRKRKDGLPLEFKQLTSSDCLAIDSFSNSDFVSNLI KSRLIEKEDHTLPNRHFFRLFKYIIRNYPEEIKPLDLILLNFKELLKSKQRSEQLLAA ELFIGIVHGLKHRSFSQLVSFWNDIKISLDQFFNIMVLDAEPSWSCAHAFILNGDLRR HWWFLESLITGAKKTNRLTEFQQAFRLSSLIFKGWYHGEIMKRVSGIAWNKLQTAVTD SLRYAVGSVFRSTAQICEKNTTATLINIPSRFVPDSLDTTIQKIIEKIPHLKLTEDPE TARNCQSDSALGSPRSRKLQPRRRRRSISEDLRDRMSLIYFRTLLETIIQYYESSTQS WSPFLVQILPKLMEYANEDDYEVSEETYRDVDITQNSAVIIHDYMSASWLRNEFVDSI VNSWVQTFLTHSESSRVRLAVIKFVQASVYSNMYPMCLKARREKVENLLFKAVFDPEI SVRKEAAKCLLLFIHCEYIHVSEEKIEELSRILQSKTDLEANTHGAALALGALVLSYP FSLPSKILKPLRILSTTCSKRTIIQQSMTETLREFRRQHRDDWVKSKEILGESLVFDI ENATAPAYYA" CDS join(409972..410040,410087..410230,410851..410954, 411003..411246) /gene="CBG03867" /locus_tag="CBG_03867" /standard_name="CBG03867" /product="Protein CBG03867" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WWY4" /protein_id="CAP24684.1" /translation="MFRFVVITLALIISGTFAIQCHTGLKFIKGTSVGTATINCDNSA AYCYNMTASAAALIEVTKAGCSMWRCMFAQNKCIGTTFQNIPISLCCCNTPLCNAGGE GAIQSENSGGWNAEPEHESVNLNKEEAQRRFDSAELDEENPHGSSSSRAARFITSETT NPTTEPVVKTVNETSELGEEVDIPLA" CDS complement(join(411508..411609,411655..411910, 411954..412129,412175..412312,412363..412484, 413583..413718,413809..414012,414039..414190, 414239..414463,414516..414604,415419..415633)) /gene="Cbr-ncx-4" /locus_tag="CBG_03868" /standard_name="CBG03868" /product="Protein CBR-NCX-4" /note="C. briggsae CBR-NCX-4 protein; contains similarity to Pfam domain PF01699 Sodium/calcium exchanger protein contains similarity to Interpro domains IPR004481 (K+-dependent Na+/Ca+ exchanger-like), IPR004837 (Sodium/calcium exchanger membrane region)" /note="Predicted" /db_xref="GOA:A8WWY5" /db_xref="InterPro:IPR004481" /db_xref="InterPro:IPR004837" /db_xref="UniProtKB/TrEMBL:A8WWY5" /protein_id="CAP24685.2" /translation="MRVGSTVRSRTKARVVRRLILIPVAMVALLGAASMMRDRRSPER DPEMIMPGMTPGNVSKPFWKAFIPTCNRTLTPPAPEVNDDGQFPPDPFSLEQRQNGFV ILHMCGLIYMFVSLAIVCDEFFVPSLDVLTEKLQLSDDVAGATFMAAGGSAPEFFTSV IGVFIAQNNVGIGTIVGSATFNILCVLAFCTLFSKTILDLTWWPLFRDVSIYMLALAM LVFFFMDEILYSLFLLQITFPEALAMFTIYILYCTVMKFNVQLEGLVKGGSDSEEASA HETQKLAADVPHNNNNNDVTQLEGNDLRRRSSARRQSVPILHSGTMFRNGIMQLMNHT LEQLPEDSEEDDSSRSRSNVNVESHDMHRLNVNQSVPDRRSSQIEEIKSLLEEEEEKP LDMTWPETWMKRLTYVLLAPVVVPMWVTIPDVRRPHNRQWYPATFIISILWIAFFSYL MVWWANTIGETFVIPTEIIGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIF DVCVGLPVPWLLYFLMEYIRNPGEPLTPISVSSKGLLCSVGMLFIMLIVLVFAIFLSG WKMNKIFGILMIVSYIFFCVFSVGLETDKLVCPLNICG" CDS complement(423028..423150) /gene="CBG25229" /locus_tag="CBG_25229" /standard_name="CBG25229" /product="Protein CBG25229" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFJ9" /protein_id="CAR98679.1" /translation="MQIPITDHFLSSLELFLLSSFLLNKKSKSNCCVFYNSVEF" CDS join(425309..425389,431515..431724,432958..433059, 433103..433270,433322..433446,433491..433876, 433923..434039,437463..437584,437662..437992, 438224..438728,438771..438953,439002..439620, 439669..439836) /gene="Cbr-mut-16" /locus_tag="CBG_03869" /standard_name="CBG03869" /product="Protein CBR-MUT-16" /note="C. briggsae CBR-MUT-16 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WWY6" /protein_id="CAP24686.1" /translation="MSGLCENSFEQRTVLIGSHLGISATGLVMTSQEDDYPDDFDITT SEQGDADDIQNHCLGAPPISDFDSNEEQDSENELEDSYDSGSEPFDVDGYDYTTEPLP AMPDDLVGNGAQNYADMNDFGGDPRELLPIFFTSTLAAHPLRLKEGYDPEELDKCLRE NMGFTLPVVATILLGSHITDGLPNDSKTEYAIALANKNWLTRNGDKFLPIFPESEKEF ITSLIEGSELLASKEETKKKEAQVFPSMEKEIRAHQTFNMIVELLQIVRDELRQRKVP YQNIMFAFNEMAKGKKHAHVFEKYSKQLELDSTMEWNTKWFNQYTNRSTLKKFVQMSK FSEIVVSNMKDSPFYFRADDEGDRPVKMFTDDDIKAVKDKWMSGNERNKNFGSNYERS GQRGDRGGPSRYQQQPKKVIEQDPNYRSSTFNGGISGAANDDGSLEPSSSSRTYDNQP SSRTRCHRSPTPSPERRRENPVAERSTIRDESTQRRSESPPPVTREVFDPFGGGPPLN QKTEDNRGNNRGRGFGNGNFSSLAKPVARIDHIGDTSSETSSRFNTAYSPPRRRTPSP KPRRNVSAEPEIPSPQPQPTQNQTPSPFLGQESPPSIDNDRMDDYMPPPPAAPVVRQL PLAVSSSRHDAEHMTAQVPYRPAEGVLERNKAEEEKKKRRQEIDDVRIESENRQPPTQ HPFLTSSRAKPTTSRNPEQGYSDPVTTNGFARRNVAQPTYAATMAAQAPPAPPAPAPQ PSPVPPPVFPLHAPMQAPLQVPVSRTNSVIKIILKPSILEEIDKEGGHLNRGYPLPPQ QYPPQNQYQPPLQQQIQQPNYQYPQQNQYQQGPPPPQYPMETPQYNPTPPPPPRAEYS SNYPPPQNQMNRPPQQSYQDQQYSRNQYSSNGNWSNPAYPQQPRSPPLPNGPPQDYNR WRDRDPPPRQPPPATYGRRDVGRPSLSTFSLLAEEDDRRAAPQRPDVGRMRDIIMSIA YNCRTKGCQLDKERLKYEVCQSRFQQHFPGGPEWFDFTSFIRNELRGTMEVRGNENGA VWYELLRN" CDS complement(join(428814..428933,429712..429735, 430366..430476)) /gene="CBG25230" /locus_tag="CBG_25230" /standard_name="CBG25230" /product="Protein CBG25230" /note="Predicted" /db_xref="GOA:B6IFK0" /db_xref="UniProtKB/TrEMBL:B6IFK0" /protein_id="CAR98680.1" /translation="MSRIFEFSNLHVKAHNNLIVKAPKRLGDIILLGPEARLISICPR GFSYILIIFFSVFSVSFHVAFVSAIISLWPYSLLALNFKA" assembly_gap 430970..431265 /estimated_length=296 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 434883..434943 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 436522..436988 /estimated_length=467 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(440797..440871,440919..440999, 441047..441132,441183..441432,441577..441684, 442559..442672,442721..442830,443662..443716, 444192..444268,444371..444935)) /gene="Cbr-scpl-1" /locus_tag="CBG_03870" /standard_name="CBG03870" /product="Protein CBR-SCPL-1" /note="C. briggsae CBR-SCPL-1 protein; contains similarity to Pfam domain PF03031 NLI interacting factor-like phosphatase contains similarity to Interpro domains IPR011948 (Dullard phosphatase domain, eukaryotic), IPR004274 (NLI interacting factor)" /note="Predicted" /db_xref="GOA:A8WWY7" /db_xref="InterPro:IPR004274" /db_xref="InterPro:IPR011948" /db_xref="InterPro:IPR023214" /db_xref="InterPro:IPR036412" /db_xref="InterPro:IPR040078" /db_xref="UniProtKB/TrEMBL:A8WWY7" /protein_id="CAP24687.2" /translation="MTYAESTRSAVVYSSIVPPPRTPVAPSMLKDGVRKGSAPQPLQP KNGTNSLDFWSKSEDEKSGITCYYSRHNIQFPSQKQINRMKQMPGRPTMNGFPSTSAA QNGNGVPKYPPFPQNTPESVMSPPVGIYRNVPAMPRAKLSKDEKNGKTRTEENGNSKN VVWGGASKRDDDVGNASAITPLNPYSGNASVEKKRSTARRKPRWTRCFQTLFCCFSRV SRSLQKEVKGGRAAEKIQSNQRTNSTNNNHQNGRPSTPTNNAGPPIQLITQVHRDGTV TGLPQTGQNGQPIGGSGDGVTTYDKVANDSIGSINEKPLLPPLLPHDSKKKCLVIDLD ETLVHSSFKPVKNPDFVIPVEIDGVEHQVYVLKRPYVDEFLARVGEHFECILFTASLA KYADPVADLLDKKKVFRGRLFREACVFHKGNYVKDLSRLGRNLEQCLIIDNSPASYAF HPENAVPVTTWFDDPADTELLDILPTLEHLNGYTSIYHMYQPEEGPQSELLNHCSC" CDS join(446927..446998,447195..447263) /gene="CBG25231" /locus_tag="CBG_25231" /standard_name="CBG25231" /product="Protein CBG25231" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFK1" /protein_id="CAR98681.1" /translation="MKNRKEPCLCEKTEIGTFFGSLRIKERWKRRMKNKTTDTAVYVL AV" CDS complement(448171..448356) /gene="CBG25232" /locus_tag="CBG_25232" /standard_name="CBG25232" /product="Protein CBG25232" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFK2" /protein_id="CAR98682.1" /translation="MFLLILFLTCCSFARRLFLFFLYIIQQLAPLCSMYFEFFVQFDM VLQTPFSSDLSIKNIEL" CDS complement(join(450707..450709,450971..451314, 451664..451721)) /gene="CBG03872" /locus_tag="CBG_03872" /standard_name="CBG03872" /product="Protein CBG03872" /note="Predicted" /db_xref="GOA:A8WWY9" /db_xref="UniProtKB/TrEMBL:A8WWY9" /protein_id="CAP24688.2" /translation="MCFSSPKCCTFFPFFFLLVSVITQPIVSRFPSSSSTSSIYSRSF FMPAFIFFLFLHIFFTSAHLFFLIITLILYFCVFMCACVCFVFLPSVSSSISLSLIFL HSVCLFKCSSSGSSITFASSSSFLSDLTPLLC" CDS complement(452644..452745) /gene="CBG25233" /locus_tag="CBG_25233" /standard_name="CBG25233" /product="Protein CBG25233" /note="Predicted" /db_xref="GOA:B6IFK3" /db_xref="UniProtKB/TrEMBL:B6IFK3" /protein_id="CAR98683.1" /translation="MPLTRFLPIPPVSTSPSIPIFFVLLLGNMFVTR" CDS join(456249..456301,456358..457027,457237..457607, 457656..458028,458206..458363,458407..458614) /gene="CBG03873" /locus_tag="CBG_03873" /standard_name="CBG03873" /product="Protein CBG03873" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WWZ0" /protein_id="CAP24689.1" /translation="MENDGKNLIKNNGEPEKDGGKVLTASKRSGRKNKTATIEEKEKT KENELPPALLPKFPSHKSLRRRSSGEAIEVTPMYPSDQYINENDENEMTRELEREKAE NHWEEGLLLIDELQLKEEEMEQQQKEMQENAHASPSDQNSLEANQKKMKQEKVEKGEK PVEKKVDKASARDKKSGRSEDRKKSKKDVASSDEKKSNEDKNKGVGLRKKASAEDANS DEFRKSGRKSKRLKKSVFKPPVQKPGQPPTQGPTSIYQSPMVPAPKNERSLKLNVGEP KSYDDKGKKLAAYPKKDGQKGTAIPAKSPLPGTPGTEIQKNPQLPPTPHQLQQQQQLQ LMQKKRRIGFLKNVYQKTKFWGRKADCVADPSMDFLSKSYVKPDYDPNNPTDFMPELS ASKILSDEDWAKRNSNIRFSKDEVFINMRPFWLTRTINDTTPKVRIQLHRPLKQMYQG NPSCILPKLSRTEPFCDPKKDSIVAMKAIDQLIGVDLNYSEYEGKQDTQRRGKKEKAQ EKEEGKEQNSKPNVTFDIPLPVPGVELDLQIYNRKHRPQTKYPNGITVENRRRFAGMR YGLKPTKEKKDRDKVKARSPSGGPVSVNSTSSNSQSSSAEGKKN" CDS join(460073..460077,460131..460635,460686..461183, 461228..461441,462059..462069) /gene="Cbr-pph-2" /locus_tag="CBG_03874" /standard_name="CBG03874" /product="Protein CBR-PPH-2" /note="C. briggsae CBR-PPH-2 protein; contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)" /note="Predicted" /db_xref="GOA:A8WWZ1" /db_xref="InterPro:IPR000242" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="InterPro:IPR029021" /db_xref="UniProtKB/TrEMBL:A8WWZ1" /protein_id="CAP24690.1" /translation="MAIKPHAAKKSPNTKTNNNKRREAESRTEEKTAIHGPKLKTTQL KKTASKSSASADRKGSTTDLAVKKSKSNVNTAYEKTITEDKEKKKKEKWSGEEAAGKF AKTLDTVNMKEEYEEIQKTTVQAERCKIWQAHSSRNRNPNYKCYDDNRVIVQLCKSDY INGSKINVPNFAPLVYLLQLPKVETPEAVEEFWRVVFQEQCQSVHIIARPEELQNPGI EQLFAQKSGAYLYANQFFINTRKVEKKDNSKADQFVVELLPEGCSNSVMCSVYLHTYW KQFAGPDRFAAQYRAAQQIAKNENGNSPIIIASVNGAGRNAALLSFAVVVDQLSKGKE PKISEIVRTVREQRPQSVDSFPQYVSLYLATNWLIKTKASSGSNTDEMISRIKKFNEK ATHDMPSSTMKQPTEECV" CDS join(463848..463925,464169..464672) /gene="CBG03875" /locus_tag="CBG_03875" /standard_name="CBG03875" /product="Protein CBG03875" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WWZ2" /protein_id="CAP24691.1" /translation="MILTILLLTILSALELICYSSLDFILKKFAEKVAELRGEGSIVW INKEEYEETKMAREMENKKKKESQPEPRVLAEETEDLLHEVDFLKRSLKCAEDVAESL KKTILSQRAEIEKHRRETEEVRNKFEQSEKDLQDELQDIVNDLIAQEKKRRQEYKDAR DEEAFDRLEASPMSLDVKSSTPKILNSETLFKY" CDS complement(join(464985..465173,465223..465295, 465346..465467,465516..465626,465677..465784, 465925..466248,466299..466403)) /gene="Cbr-cdk-7" /locus_tag="CBG_03876" /standard_name="CBG03876" /product="Protein CBR-CDK-7" /note="C. briggsae CBR-CDK-7 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WWZ3" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR037770" /db_xref="UniProtKB/TrEMBL:A8WWZ3" /protein_id="CAP24692.2" /translation="MSKRYETIRHLGEGQFANVYMAKDLETGEVVAIKKIKLGSREEA KDGINRTAIREIKLLKEIHHDNIITVGFKVGKDPIFDFQLRDVIGHRTSIQLVFDFMD TDLEHVVKDQSIILSPSHIKNITMQMLLGMEFLHTHWILHRDLKPNNLLLNNMGRVKV TDFGLARFFGSPNRNYTHQVVTRWYRAPELLFGARSYGVGIDIWSIGCIIAELLLRNP IFPGDSDIDQLVKIFNVLGCPTDESWPTMKAMNSYVNIKPQSETPGLNFIFSAAPQDL IDLMTGMWVFDPVKRLTCTQSLQMEYFRAQPYCCLDEELPLPNKKPAKRTRRLEEDGS HPARRLIFD" CDS join(467794..467850,467898..469910,469955..470299) /gene="CBG03877" /locus_tag="CBG_03877" /standard_name="CBG03877" /product="Protein CBG03877" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WWZ4" /protein_id="CAP24693.1" /translation="MSESLHRLMELAQAETDRMKIGELEDQLVTCQVEKRDLQSKFEK EQEENKALHLTLALRTDCEHELERVRSETHPGVEELEVKLAAAEAEILLMESTNKELL ASLNTTRGQLGKMLRERNEKIKEVEQLEEALEKMENRQKRSWSDDLHCDFELNTYSTN MKLMLEELNDQTSKWEKEKVMLKKHYEETEKKLTKENAKLKAQKEDIVNHSRNSEKMY QERLDQVFVELAMLQDGKKSAGSKEDLRTQSNQEVNRKLQTALEAIDEMEDENVTLRE KLDEATARISHLDAEISVLRPKLAGRETLLEDARKNAEHMALLVKDVIALQDERSTLK HELSEIMEKQTQQTITFSNEKAKFCHDMERMEEHWSNEVGKLKEQNEVMERMLFAATK DSMDKKELFEEEIKEHNQKIEELECLLKVQATMSDRKSEQFKGEIAELKDQLEQAKTV QETAVRQWDDECADLEDEINTLLEKRSTETKKMRTMTRKNVWLIKSIRKLAEQRRAEI DSKQVEIQKLTKLCELQRLENNECLSNLKEEMNAWKEDSAVRQELEVEVADLKNHNTA LENRVVRMLARSKSEREDYLRNMEILRSDSDFDLSRAEANLNTAKKEKEELSMQIQTL KEVIEEKERTLAVQKVESSKLLEATLKSLTTEMDNIRTVMNMEKDRILDEKALLTNHL AAKNEIIQTHEIDRKTLIEAIAKISQMEKEAQSSYEQHEYECSMWRAEVRQLKTDNKM LKENMGVEVLEDQSSDDSSCSDDSDCSDESDSEEDGYDMPKPEEVEKKVSNEWEMVHE DEDECK" CDS join(471603..471671,471778..471852,471901..473550) /gene="Cbr-epg-2" /locus_tag="CBG_03878" /standard_name="CBG03878" /product="Protein CBR-EPG-2" /note="C. briggsae CBR-EPG-2 protein ;" /note="Partially confirmed by transcript evidence" /db_xref="UniProtKB/TrEMBL:A8WWZ5" /protein_id="CAP24694.1" /translation="MSSESIDFSMVSRLLQEIQKLKDEAKDSTEALNTQNSKLLKENE KLKEEKNIQEELAKKFKIYATLLESMLDNAREEQNTESSQVNDPTLEEMRETVNRLQR EKDDLNDMMDEFKAMWKKDSKDFLETLKIVRKEEADMKAKFDRQEQRHIRDQGLIHEA YGKMQLVENARRITLDANVHMEQELRRNVAEVDVCKKQIEELSKEKAALDSKLKQQES WMQTQSAELSTALAEMFKSREIAARQIKDLKENYQLLQNSHAQELAAVKKQKEEDKEY FENEKAYLSDRMNKAIYEVEVLQNKATWLEASLKTTTENSAEATRKFLAIEKDLNEQL KEIEERLEKKSREYEEACDDVKRSKSVISECQVNFASTHNALALKHLKLEEKEAEMSQ IREQLGATLRNCLDEKEKLEQKHQDTIAAVQQRFVYQIEEIKHNNMLAINQEMIKAQM ALDSEKKKNALENDANQKKMEKMAAEIERAQRELRASTAKINVLTKDVISLSNDNDRI ETECAHLKDDQVINRTKISSLKTYIGKLETAAFEAEEKHQSEMNELRDATRSLMENMG VEELDECNDNDSTVVTQEKTESAEWELVDEE" CDS complement(join(473914..474066,474118..475178, 475225..475369)) /gene="Cbr-tpxl-1" /locus_tag="CBG_03879" /standard_name="CBG03879" /product="Protein CBR-TPXL-1" /note="C. briggsae CBR-TPXL-1 protein ;" /note="Predicted" /db_xref="GOA:A8WWZ7" /db_xref="UniProtKB/TrEMBL:A8WWZ7" /protein_id="CAP24695.1" /translation="MSKNQTIQEFDENFFSSIAVPKVKDYSRLSSSPSRDQPCDSSYF EKHFPNLECDTPVKMRLPAVNRNSDDALPAGNMDNFLSSSASSETTVNAEQQDTTSVK QQPSHNNREPLKIVPNEAAIPAQSKVYGESQLIEGLEKLTMFAPKEPEERLSQRRRSE QKKRNEEEENKRRSGVPASSVNRARSISTKRSISREPSSTTKRESSIPRSRHNSVTRT ISAPINATATGVVTRAMAARAAETSTKPLVRRSVMPLKVAQKTPVSTLKKETAPGSGD RSRDRTRRTNTTGTSVRRSVMPVKPSGAATPVAPPRRSASATRAPVSVSKMTPKNRPI ATANRSSILRMNTVKLTAPPVSITAESEAQPKKLITRPAVPTTATTRIRQPLRVNPST PSSMAKKPAMPSSGQRPARVPHVVTRARSVDRSAPPPPAASTPSASVIFKKTPVPKMR IL" CDS complement(join(475644..475769,475820..476554, 476598..477287)) /gene="Cbr-icp-1" /locus_tag="CBG_03880" /standard_name="CBG03880" /product="Protein CBR-ICP-1" /note="C. briggsae CBR-ICP-1 protein; contains similarity to Pfam domain PF03941 Inner centromere protein, ARK binding region contains similarity to Interpro domain IPR005635 (Inner centromere protein, ARK-binding domain)" /note="Predicted" /db_xref="GOA:A8WWZ8" /db_xref="InterPro:IPR005635" /db_xref="InterPro:IPR039130" /db_xref="UniProtKB/TrEMBL:A8WWZ8" /protein_id="CAP24696.1" /translation="MTDAEFEEIAIPRTLIRMEQMSITRKAVAQSSSLSRNAAYSGTP RRNPPREAHGNHGTPRNIFPSTPGKGIATPSRVVAPPRTPHRAIPFSEAEKNPDQKLK HADELRNKALEEKREKARKAEENRAAVLQRKQELDRIRMEKLDGIKKKDERVATFQKN MKDHHKSPTRTRVNPEARTPVAMKQSARKVFPTTSDAATPGRGPAKKGRIEVFGAEKE GVTVAQATVQISPSRDPLRNSNRQVKGEQMESEGIVPVKQPKPRLKAKRSQPTHTVPS SSKSTAEDDGAAVLKAEQEQYLIKQAADAKVRAEEQRFLQEKTAAELRARAEEQRLQQ EKKAAEEKAEARRKRAEEEKSRLLEAQREEEERLRKQQAREDAELQATLAKQAEKKAK LEAQGKEPPSTAYQMTPPRTYQANSKNDYGLNDLNSDDETDQEDDPRKEVPPWADFVI VRQNVRRQVKNPPFDIAEFFGVIEKPNLKEIFGDTVKMKKRGSSAVWRSPAGPGNVSR TPLEEIVE" assembly_gap 477295..477410 /estimated_length=116 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(478013..478095,478138..478306,478596..478967, 479013..479220,479649..479860) /gene="CBG25234" /locus_tag="CBG_25234" /standard_name="CBG25234" /product="Protein CBG25234" /note="contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR019775 (WD40 repeat, conserved site), IPR001680 (WD40 repeat)" /note="Predicted" /db_xref="GOA:B6IFK4" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR019775" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:B6IFK4" /protein_id="CAR98684.1" /translation="MEVDNDTQPTVNIDETLTIQCDWHLALREPISLFWLGIKRSGAA KSEFFDVQVTKLVDEYGFAVMPGEGTIKSSAFTKILLDELRVLEGHIMDVYRCMYFPS GLVVLSGGMDMTVKIWGVDSGKCAATLKGHTQAVTGLGIIGVGREVLSCSNDGTARMW ECRDSKTVKTWNFGKGRCADLSVSVDCSRFAVICESNFLSVIDLHGDQVRRDIKLPSE PSALCFSNDEAGEIVFVGFEDGSVGAYNVAQQHLIGQIKTQKSSVKCLKYFCNRLLVA FNDGGVFAYPIPSLPQKSGESTDESENIISAEYELTGADCDPIYDIAIHKRSVYTCCR DGVVRMYKLLWNT" CDS join(480002..480076,480129..480283,480333..480770, 480818..481115,481162..481364,481441..481720) /gene="CBG03881" /locus_tag="CBG_03881" /standard_name="CBG03881" /product="Protein CBG03881" /note="contains similarity to Pfam domain PF01189 NOL1/NOP2/sun family contains similarity to Interpro domains IPR001678 (Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p), IPR023267 (RNA (C5-cytosine) methyltransferase)" /note="Predicted" /db_xref="GOA:A8WWZ9" /db_xref="InterPro:IPR001678" /db_xref="InterPro:IPR023267" /db_xref="InterPro:IPR029063" /db_xref="UniProtKB/TrEMBL:A8WWZ9" /protein_id="CAP24697.2" /translation="MSFFRYNKFIYLTQFRCKTVKFKPKIAKTKPLKTPSALALDHFD FYYGPLFGKKWPSIRLGLLSPNRYLAVMNTMSRDWEPHDEILADMGAKDLLASIRGKT EDDIIEAKRQLVEMKADEETKKVKNEIAVGRIDEKIIQCLCCLQNPSTSSERNFSLDE EQEAIFRSAAGLSEFRASPGELSSGSLQMSRGGIKNNKDVEITGFEGEGVRIPKREHF LYYPKDLRVRAFKRGVLLDFPAPMKDQVGVPSYWLLDGGSLLPVLALGLQKDDSLLDM CAAPGGKSLLAALSNLPSKIVCNDFKLARLGQLKRALMTYVPEESEAVDKFVLKRKDA SDVKSWDEFEAYDKVLADVPCSTDRLSVNTDDGNIFSTSSTQQRLDLPLLQTKILVNA IRSVKVGGSVVYSTCTLSPSQNEAVVENAVAVVKNDFGIEIVEESLHQLVSHMTASGL YRFHDTPLGALVVPFLPSNFGPMYICKLTRLQ" CDS join(482315..482500,482545..482697) /gene="CBG03882" /locus_tag="CBG_03882" /standard_name="CBG03882" /product="Protein CBG03882" /note="contains similarity to Pfam domain PF02970 Tubulin binding cofactor A contains similarity to Interpro domain IPR004226 (Tubulin binding cofactor A)" /note="Predicted" /db_xref="GOA:A8WX00" /db_xref="InterPro:IPR004226" /db_xref="InterPro:IPR036126" /db_xref="UniProtKB/TrEMBL:A8WX00" /protein_id="CAP24698.1" /translation="MSDADQLKQLKIKAGVVKRLIKEHASYQKQVVKDEEKADKMAAD ATNEDEEYAAKKAKEVARETVTMVRDAHGRLQKAVADLQSFVSSGNFSDESAELVEAK AQLEAATASA" CDS complement(join(482906..483367,483421..483690, 483737..484087)) /gene="CBG25235" /locus_tag="CBG_25235" /standard_name="CBG25235" /product="Protein CBG25235" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFK5" /protein_id="CAR98685.1" /translation="MDRLFAEDEMKNSPFSPKTSTTSSPAKSTTYFSAAAFWKNDTES VKVGVILSELENAEELNFLMFDASKRILRKLCVDDAEFQLSEDSLAVRVETPPEVSVN VKFVDRLTFMNFSTTVILRSKKHMFLKLSDGSGDSQIENGCDIRYNLTKHSFDEKGHL KLPDERKGVKARLTKEKLMDHVVYKWMSGLRKGCHFLIKDTLSSVFEVLVDKIRKSTD VIDEEKSVHESKEASVEIELKADTEISESSQDVTTKDQLINPPISDESLIASDVTIVP TSSPAPEHDPQLVPVTNSTSQNFVPPLPVTDDIRDVLHRIVGIELDRIEMRLNNKFEK LQNDIMARLDHQAVLIQKILEKSLAE" CDS join(484530..484539,484587..484675,484727..484932, 484977..485367,485417..486025,486076..486180) /gene="CBG03884" /locus_tag="CBG_03884" /standard_name="CBG03884" /product="Protein CBG03884" /note="contains similarity to Pfam domains PF09173 (Initiation factor eIF2 gamma, C terminal) , PF03144 (Elongation factor Tu domain 2) , PF00009 (Elongation factor Tu GTP binding domain) contains similarity to Interpro domains IPR000795 (Protein synthesis factor, GTP-binding), IPR004161 (Translation elongation factor EFTu/EF1A, domain 2), IPR015256 (Translation initiation factor 2, gamma subunit, C-terminal)" /note="Predicted" /db_xref="GOA:A8WX01" /db_xref="InterPro:IPR000795" /db_xref="InterPro:IPR004161" /db_xref="InterPro:IPR009000" /db_xref="InterPro:IPR009001" /db_xref="InterPro:IPR015256" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8WX01" /protein_id="CAP24699.1" /translation="MAAEVEKDECQSWLAKQDLDKIGVDNLNPLTDEVISRQATINIG TIGHVAHGKSTLVKAFSGVHTVKFKRELERNITIKLGYANAKIYRCSNAECPRPGCYR SAGSSTPDRIPCERPNCGGEFVCVRHVSFVDCPGHDILMATMLNGAAVMDAAFLLVAG NEQCPQPQTSEHLAAVEIMQLKHLMILQNKVDIIKESQARENYEQIAGFVQGTVAENA PVIPISAQLKYNVDLVCEYLCKKIPVPVRDFKSPARLIIIRSFDVNKPGSEVENLKGG VAGGTLTKGILRVGQEIEVRPGIVSKTATGQLQCRPIFSRIDSLFAEKNQLEYAVPGG LIGVGTKIDPTLCRGDRLVGHILGAVGTLPDIFIEIEISFYLLRRLLGVRTEGKKKGA KVQKLVKEETLLVNIGSLSTGGRVTAVKGDAAKIRLNDPICTEVGEKIAMSRRFEKSW RLIGWGTIRKGQTVEPIKN" CDS complement(join(486557..486653,486977..487157, 487205..487292,487336..487425,487475..487626, 487672..487801,487849..487974,488779..489122, 489167..489323,489493..489610,489655..489772, 490013..490176,491581..491603,493516..493953, 494209..494328,494377..494454,494500..494700, 494743..494862,494906..495029,495059..495267)) /gene="Cbr-lgc-51" /locus_tag="CBG_03886" /standard_name="CBG03886" /product="Protein CBR-LGC-51" /note="C. briggsae CBR-LGC-51 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF07690 (Major Facilitator Superfamily) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR011701 (Major facilitator superfamily), IPR018000 (Neurotransmitter-gated ion-channel, conserved site), IPR006028 (Gamma-aminobutyric acid A receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain)" /note="Predicted" /db_xref="GOA:A8WVN8" /db_xref="InterPro:IPR006028" /db_xref="InterPro:IPR006029" /db_xref="InterPro:IPR006201" /db_xref="InterPro:IPR006202" /db_xref="InterPro:IPR011701" /db_xref="InterPro:IPR018000" /db_xref="InterPro:IPR020846" /db_xref="InterPro:IPR036259" /db_xref="InterPro:IPR036719" /db_xref="InterPro:IPR036734" /db_xref="UniProtKB/TrEMBL:A8WVN8" /protein_id="CAP24701.2" /translation="MCLIHFLAVIAMTFAQFSDKVPKCTKPRLTPAAILDVIMANYSR FLLKSILMFFVSLDLFQVIQLVFKWNVLSNSFTADIWFSSIWYDPRLAYSHLDDCRQN LSFDDRFEKLIWSPNVCIVNTKSAHVHKSPKPNVLLMLLPNGTIWLNYRIRVQSPCSM NLERFPIDTQYCHLVFESYSYNTASVSVNWMDNPVTVLPEISLADFDLSRYRTSRHTE VYKAGEWYRLTVELEFTRKYGFYILQLYVPTYISLFISWIAFCIDTKALPARIVLGVN SLMSLTFQFGNIIRSLPPVSYVKAIDIWMCTCVGFIFASLLELAFVAYQDKKLILKSG KSNAAISTLVSYLKHFEPYHEVASPPPPHPIDEKKMMSRTPSTVTNPSKSELDGLDTT DLEEEINEYRKLAYARKKFRLLDFGANVDRISFIVFPLNSDQNPYLLLISTLFLLSCL LFRRNPKLKHLVLCHFQLLLLSLFSPTSKNLRLLLSSFLHIVSLWTLKSIRFQTALLI SSACLVFGLMRTCFGMAMVDIVRSGNETFHSDLHMDWNGEEQARIHTSFYIGAFIAVF PSEFLKHCKIFRLGPKHLLSFALILNIIGSILTPFVAIYFKTYILIFGIRMIMGFGYG FMIPAGSVLISKWFPISEKSTAMAIFTTGNQIGIAVSMFLTAKLCQLPIFEGWPLVFI VYGLIGVIFLIVWHVRLADKPRESRYITATELTYIKGGKQKRSRAETIVRPTPYMKII LNGCVCAICVCSFAQSFVLVALVTYLPKYNQIALKMNLTYNGIWSSLPFFIQMITKLL FAVIADKVKQAKVNATLVTKVSNSIASFVSAAFIVLAALTPFGSAELVQLSIIISMAA FSAYVPGYNTSIVTVAPQFTAFISSYAQLYAQIASTLAPILIGRITSHDTIEEWKFAF YSLAAVLAVTGIVFQIFGHGRTEPWGETPSNAASARISTSLAVCEDGQCKLTLLEKHN HDFRTESKMSSDSGIAKKKASLVSYAGEEILIPGRIEDLENDVIYSIEEERED" assembly_gap 496275..496891 /estimated_length=617 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(498360..498521) /gene="CBG25236" /locus_tag="CBG_25236" /standard_name="CBG25236" /product="Protein CBG25236" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFK6" /protein_id="CAR98686.1" /translation="MNNIRVTIENPRDEVLLRARIAQLEEKVRQERERGEKVKMEGRA KTEDTGELK" CDS join(499516..499634,499680..499827,499874..500011) /gene="CBG03889" /locus_tag="CBG_03889" /standard_name="CBG03889" /product="Protein CBG03889" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVN9" /protein_id="CAP24702.2" /translation="MSSTAFDGEAPETDDETEEEIFENTQVGSASAKREESHQKFSSV DRKLERRWTQVATGAIQICRNRCMNEEKTMQKVIESAAEYFTSMQTVAAKLNVVHTNV TRLEDSVADLLEASKLIPNKCINRDLNIPEFF" CDS join(500412..500535,500580..500805,500852..501080, 501125..502497,502536..502748,502768..502990, 503045..503149) /gene="Cbr-mcm-4" /locus_tag="CBG_03890" /standard_name="CBG03890" /product="Protein CBR-MCM-4" /note="C. briggsae CBR-MCM-4 protein; contains similarity to Pfam domains PF00493 (MCM2/3/5 family) , PF01078 (Magnesium chelatase, subunit ChlI) , PF07728 (AAA domain (dynein-related subfamily)) contains similarity to Interpro domains IPR018525 (Mini-chromosome maintenance, conserved site), IPR011704 (ATPase, dynein-related, AAA domain), IPR000523 (Magnesium chelatase, ChlI subunit), IPR003593 (ATPase, AAA+ type, core), IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR008047 (Mini-chromosome maintenance complex protein 4)" /note="Predicted" /db_xref="GOA:A8WVP0" /db_xref="InterPro:IPR001208" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR008047" /db_xref="InterPro:IPR012340" /db_xref="InterPro:IPR018525" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR027925" /db_xref="InterPro:IPR031327" /db_xref="InterPro:IPR033762" /db_xref="InterPro:IPR041562" /db_xref="UniProtKB/TrEMBL:A8WVP0" /protein_id="CAP24703.2" /translation="MSRPNDQREPQSESTDLFAEPSSQGSGMRSEQASGVMSPRSGSS ASALHYGSEMGSVSQMSSQSTMRRGGPRGDLGIAAVDHRTVQIQGMDDDLAADDGQPR LYVWGTRICVADVQKSFRDFLTLFKISHLDEDENMMAGNDETLHPIDISQPYYMERLL ECNDAEVTHINLNLAHLQSFSEPLYRKVIAYPADVIPYLDIVVNEVFAERFNRTLSQS IELRPFNAEKTRNMRGLNPNDVDQLITISGMVTRTSALIPEMRCGFFQCTVCSFGIES EVDKGRIEEPVVCTNCSNTHCFQLVHNRSVFLDKQVIKLQESPDDMPSGETPHTVSVY AHGSLVESVQPGDRITVTGIFRAVGMKVNPKQRALASVYRTSIDALHFRKMDTSRLHQ DNGETLTEERINQIIELSKRPDIMDALAQAIAPSIYEHDDVKKGLLCLLFGGTRKDDE TTNKTKLRSEINILLCGDPGTSKSQMLQYVYRLLPRSQYTSGKGSSAVGLTASVSRDA DTKQLVLQTGALVLADNGVCCIDEFDKMNDSARSVLHEVMEQQTLSIAKAGIICQLNA RASILAAANPVDSKWNRNKTIVENIQLPHTLLSRFDLIFLIVDAQDEMQDRRLGNHLV SLYFENDGDQAKTEQLDMNLLRDYIGNICKGQHSSETCEDASQFIIEKYLFMRKAGAQ HGQITAYPRQLESLIRLSEAHAKIRLSQEVSVEDVEKAFTKVTIAFSLWREALRQSAV DPATGRVDVAILASGMSSSGRKAVEAMCEVILKQLQSAKGFVTSKALYQTLKSADKAC SKEVFDEALNELTKKESIARSGERVRFQPVDA" assembly_gap 503577..503825 /estimated_length=249 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(504006..504194,504320..504838, 504892..505360,505409..505565,505611..505743, 505793..506056,506106..506365,506411..506748, 506798..506937,506984..507107,507156..507242, 507287..507656,507719..507822,507868..507962, 508015..508129,508176..508359,508403..508480, 508525..508662,508707..508846,508875..509104, 509150..509241,509286..509604,509652..509794, 509848..510034,510285..510411,510460..510661, 510711..510891,510938..511099,511146..511449, 511501..512199,512244..512403,513223..513316, 513375..513505,513553..513604)) /gene="Cbr-abt-2" /locus_tag="CBG_03891" /standard_name="CBG03891" /product="Protein CBR-ABT-2" /note="C. briggsae CBR-ABT-2 protein; contains similarity to Pfam domains PF12698 (ABC-2 family transporter protein) (2), PF00005 (ABC transporter) (2)contains similarity to Interpro domains IPR003439 (ABC transporter-like), IPR017871 (ABC transporter, conserved site), IPR003593 (ATPase, AAA+ type, core)" /note="Predicted" /db_xref="GOA:A8WVP1" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR026082" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8WVP1" /protein_id="CAP24704.2" /translation="MEAESFRSESQCLLLSPKKQKSSDASPDTKLFEEPGLGMVGFWR QLHFLLWKCVLVRRRQKFWLAVELIVPFILFIIIALVRTKDFSEGMPQCHYDSKGMLS AGVLPFIHSFFCSFSNRCNAIPTTGDEREFLFNDNGNLTRNESIIVDAIYYSSLQLRW IGKNPKKFEDLTKGGAEIIHWLAGKSLNSTEVVRIGDLFDTPIRENLTKALNNTGLRL ETAQKLMNVRLEVGAIEVYDVLRNELSWTDLLFSNPLFCDERMFEKTFSFETGQEMTS EERDELCDVLTLAEIMDYKGYISEVTIPTASRFRAQTFMTSFQNLFEPSLIFFQKYSN YTTDQLLLALFCGEDPRDVIEQTINPNNDKTVETPFEKLRKQVIKFIQNVTPGKEQEK NSTCSPVPYHNDMNCSSLESPILMKVRAALSGYILVSPDNPATRRVVERLNVPLRDVE HIRNLLYSYPSDALEFQDRLHASDLWPASQKLLHFIKLYKDGQNPLNNRNIRFLLEHL FAPSSDEYSFGSFTKNITEVANKYTGCFLLDRFRFVSDEKEMETNAVCLMESHQYFTG IVFEMNSNATEFDGFTTYKIRHYPEMIDSTTSFMDSRSNPFTRDKPLIDLKYLTFGFS FLQEAVDRAIISEKSNLSDANLGVYSQQEPYPCTVKDTFNVALFMPLFLLISFIFPSA LLVKNIVYEKEQKIKVGISKITEQMRAMGLGDAVHFVSWALISLVLNFISVLVISIIS KVAKIFDYTDYTLLLFVLVLFLFASIAMSIFFSTLFTNANIATAATCVLWFVFFIPFQ LLRTDRISSPTFNRIALLLPPTAMGHCFKLLESFNAMERASWSDLGEMSNPDLGVSVE LCMAMLLVDTALFLILAWYISAVAPGEYGVRQPLYFPFILKYWAPGLYKNRVEFIDDE HFDVIPTSDSFDSEPTNLNLTVHINSMSKVYENGTKALDSLNLRLYEGQITGLLGHNG AGKTTTMSILCGLYAPSSGTAKIYQRDIRTDLRRVRDVLGICPQHNVLFSQLVIFNLT VAEQLRLFAALKGVPDKELDIQVEEILASVSLTEKANKLANTLSGGMKRRLCIGIAFI GGSRFVILDEPTAGVDVTARKDIWKLLQRNKEGRTILLSTHHMDEADVLSDRIAILSQ GQCITVGSSVFLKRRFGNNMSLAMVKEDLKVDYARISSEIIELGSDIGLGIGDENEEE IVFKIPIQTESDKLEKFFLRLDENLEKYRLGQYGISAPTLQNIFVSLAPQKEYHVPKV VKCGFLKRLKDKLCNSGGHEEDQNDLTSLNPVVVENNMPQNNEVEEVKFEDFEKPDLL QGKRLILQHFWALLVCRMNYTLKSKRTFLFQVIIPLVLLAVAELFVVLQVSSSRPDLM TSMPPLPLETSILGNHSDFYVNSWDASENSTATGILHSMFTSPGTGPRCAKDTPTEYL SSIRRELLFRNRYGWGRNMPPPGVKKETVENEYQCQDITGTFDYTEDISNVTYNEPVY CDCEDFGWNCTLENWPWRETPWIGLNTTDRIFDLSGKNLTQFRMITRNAQTSNATAPF FLGGFSLGHVNQRAQSQNDIDISKSGWLEAVKDITEATVIINLNTTGIEPSTPKVKDP FAENITVTKVIDDVLQNLDVKTNVKVWFNNKIWPGLPITSNILSNALLRLEDPDIAPE DLGILAMNHPMNKTISQTLDQNALRFTQTLALFRITCLLLVLSMIPAGFTVYLVEDRI CEAFHLQIVGGLRKMTYWVTSYLYDLTVYTCVILVIMLIYVSFRVTDFTGDAATFFSF LLLFFMQGMSAILYAYVFQKMFSVPALSFVLIAIGSYFVGIVCALTVIMLETLMVQDP TLVPAHNICAIVFLILPQYNLGIAIFRGLMIYQVRKIGSNFLEQINRPDMIDQLPLPA LLSFDQMGMHVMCLFLHAILATICLIFSQMDEFGFVRRRERNLTSAMMLREPPYDEDE DVVKEKNRVDGITSESSHNYSLVVRNLAKAYNPELLAVKGISFAVEPGECFGLLGLNG AGKTTTFSMLTAKIRPGHGSIEMQQTRITTGSFSDVQNFQQLGYCPQFDALNMKLSTR ENLKFYARIRGIVPTQIDSIIDRLLVALHLRPYANTQTSSLSGGNRRKLSVAVALVSQ PSLIFLDEPSAGMDPGSQQFLWKVIERLCKSGKAVVLTSHSMEECEALCTRIAIMNRG RIRCLGGKQHLKSKYGKGSMLTMKMGKNENSREIAGILVAKIGEGSRIEAVHCSTIFI HIEQGTASVARVLKIVNQIKQTYEVDDFTLSQSTLDNVFQSIAENQQDSSSSSSDSHS PNATLSINRNNTASTYVMASDH" assembly_gap 519116..520115 /estimated_length=1000 /gap_type="between scaffolds" CDS join(522093..522215,522655..522752,525224..525285, 525332..526647,526697..526792,527176..527321, 527371..527842,527868..528170,528286..528717, 528837..529361,529680..529931) /gene="Cbr-afd-1" /locus_tag="CBG_03894" /standard_name="CBG03894" /product="Protein CBR-AFD-1" /note="C. briggsae CBR-AFD-1 protein; contains similarity to Pfam domains PF00595 (PDZ domain (Also known as DHR or GLGF)) , PF01843 (DIL domain) contains similarity to Interpro domains IPR018444 (Dil domain), IPR001478 (PDZ/DHR/GLGF)" /note="Predicted" /db_xref="GOA:A8WVP2" /db_xref="InterPro:IPR001478" /db_xref="InterPro:IPR002710" /db_xref="InterPro:IPR036034" /db_xref="InterPro:IPR037977" /db_xref="UniProtKB/TrEMBL:A8WVP2" /protein_id="CAP24705.3" /translation="MQTEILREGDTIRIGADHLFKFSGGPQANQKHFQQQNYAEMVDS RASTARCGPSDYCSLPLAQGGGNNDYYPPSISGSSVSSSRQEDLLMHANNNILPPYST SGGFSSKLSQEPFQIPLSIQIGDYNVWDFLAEVMSNRAATSSEMSSFRLSPAYSLYLA LRFFHAHNKPYSVQFFSRIESNFKQIAQECNSKDDLIFWLANASEFNHLVERDTELKA SRYGKVSIEIERIFRRLVLILKGLIRPAARSLLDVHMNDHDATGDVIHLLDTTMRQAR VCGLNAALTIQLCGHLLHMVNAFVFNSLVSVELPAASLTTRLGKCLQYRIDSIHRFCE RMGVELAAECHLDRTRQAANLLAAQKNDVATLGATCYKLNSLQVVHILSGFQPENGEI PCDDDIIDRICHLAEKQADVLTQEDGQRMALEEFEDLNLPFLIPQDGYFIEQFKTVPD GLFQYLQQLQHRRLCHSVSMSPTQPTPHPSMTTSMHAMHIGSGDSTQNHQHYQHHQQQ HPQQQQPIVRSVSQTTLTSIPPTPFGNSFGSSASDVVTRVTLKKNGGGIGLSIVAAQL QGYGERQMGIYVKKVVEGTPAALNGRLETGDQLLSVNGHSLIGISQEDAARLMTKSEN EVHFEVRKQAAHRNGLSNFLHPQTPTTSNGHFVAPSPSTIPPPQYPPNYSNFGQNGTY AAPPPPPPSYSQRYNQPQQNGQAGRNSAYVAPLSNSSSNASSNHMQQHYAHHNMHMNS GADPNANKHYRSSSASDLQQDVSASFFFSSNPNASFSQSSMTGSARSSLFDKLPSHYR HSTRPTVIQPTRPGAQSPSALRKNAASPANVSTSSNLYRPTSASNLFAPPRNSGGLVG YSSKAARESTQDIHRALMELEMNSPLARSTPNHEDSINNSSSYRVPPTVSNYAPLHSI RPASMYGYNSPSSSSTTTGTTVIPSVSLATSHRNISNTSSSNTSPRVNVTLGGAVSSS RSHNNLGPTSNSSQEPAIVRPVDLNMPKAVPASIKGAVPTAITQALQLKQNGGGPVLR QIRPQSGLRERLQDADIRKLEKTNIALMSYEAVNDELDRLESKGSTMTDEEQRRFREL LNVAHEQSRARKMLSEIRSPPSHQERDIPIHVEKEQQRSESRRTETLIDDVPHSSSSV ENMSPVSPPENRKVQFIDEVSQYQTPTSNTAMLFAADVPVLDSPGIVGTNEIYRDPRQ RRLNELQDRNRNDNGADGTKLDFRDKQRLFARQIGEDSMPRQRMDVSSAQRLIETDLA AATSPSTANQKP" CDS join(532345..532386,533530..533536,533560..533642, 533691..533813,535140..535427,535477..535722) /gene="CBG03895" /locus_tag="CBG_03895" /standard_name="CBG03895" /product="Protein CBG03895" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVP3" /protein_id="CAP24706.2" /translation="MEYKLMLFALYKSIEIQEVPRGIYHFSDTDRDIETSFKIPDFEA MDPIKVASDLMSSAMKVDTKRKTLAGIQMPFSLTGRPMSLQINGESHDAVSLVDNPKK KNEDKKPEVRRSDMTPESRKAFLRARQVCLEQSADSCDQALDTFHRVRYGKSLLVEDE ENGENEQYRSIIERRLKEEEKVSPSTSHSTSEESTSSNFDPFTKSESHEDLEEEKEEE EEEDEEEASESTTTQKSPSSNHRFSHITLPKYHDKANSFLRDIN" CDS complement(join(535853..535876,535925..535999, 536059..536350,536644..536818,537295..537646, 537693..537820,537866..537917)) /gene="Cbr-dct-9" /locus_tag="CBG_03896" /standard_name="CBG03896" /product="Protein CBR-DCT-9" /note="C. briggsae CBR-DCT-9 protein; contains similarity to Pfam domain PF01607 Chitin binding Peritrophin-A domain contains similarity to Interpro domain IPR002557 (Chitin binding domain)" /note="Predicted" /db_xref="GOA:A8WVP4" /db_xref="InterPro:IPR000535" /db_xref="InterPro:IPR002557" /db_xref="InterPro:IPR008962" /db_xref="InterPro:IPR036508" /db_xref="UniProtKB/TrEMBL:A8WVP4" /protein_id="CAP24707.2" /translation="MLLFYIILLIGAASAAKPKYGNCLEGDKIRHEVDAEKYYQCVRN KWVLLECQINYYFNVVTGFCEFYRVTPMPPTPPPMRVCRPGSRKPDVFDNTRYLECTY DGKGFIVRYCQPGAIFVSSENMCVNIRPTYTPPTLPTYTPPTPATPYYGACKESAGRD GYKPDIFNCRKFYKCASGLWTQMSCGQGTIWNQAILTCDHDRGQCSYPPVTTTYPTTW HSTTWWPTTRYPTNPFKKWLCFNSQNGYKTPLFVRFFVENREPYPVTYNVKAREKIFR VDSSSGILKSGERKTIKLFLISSDDWPLSFGEYTQKRIKMAIECLRLPEQIEPSNPKE ASMMAKTIWKRSFNEWPLERIYTKVNIFIVS" assembly_gap 538719..546225 /estimated_length=7507 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(546618..546859,546903..547001, 547051..547225,547271..547463,547512..548308, 548375..548449,548504..548693,548742..549211, 549257..549379,549427..549545,549592..549717, 549766..549877,550065..550312,550367..550476, 550527..550693,550749..550790)) /gene="Cbr-gcy-17" /locus_tag="CBG_03898" /standard_name="CBG03898" /product="Protein CBR-GCY-17" /note="C. briggsae CBR-GCY-17 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF07701 (Heme NO binding associated) , PF00211 (Adenylate and Guanylate cyclase catalytic domain) , PF01094 (Receptor family ligand binding region) contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR011645 (Haem NO binding associated), IPR018297 (Adenylyl cyclase class-3/4/guanylyl cyclase, conserved site), IPR001054 (Adenylyl cyclase class-3/4/guanylyl cyclase), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR001828 (Extracellular ligand-binding receptor), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WVP6" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001054" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR001828" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR011645" /db_xref="InterPro:IPR018297" /db_xref="InterPro:IPR028082" /db_xref="InterPro:IPR029787" /db_xref="UniProtKB/TrEMBL:A8WVP6" /protein_id="CAP24709.1" /translation="MIQRLLIIIFTTFLVLTQCQVRQTLKVGLIFVQNVTNLQVAIGY RTSASAVLVTKEKIREEHLLDNFDFEFIYDFDECNEIQAAGKTVDLLVNKRVDVIFGP TCSRSGMISSTLAAQYNIPIFEWGLTSARQLTDVVRYPTSLPFSVNSYSLAMAIRGTL KQFEWTEFVFMYCNDGDDEKCESLKDDIQTVASQHSDITLAYTTRIMTGSLSDMRTAI RDIKKRGRIIVACVASGNGSKRTLMQAASLEEANNSEYVYIMAETNSRGFIVDEPGGK WHYLWEGVFNDSASFTSEDSRQSMANLLFLVDNMGMNDEVTPQYLNFSRKVIEMMKDP PFNCIEDCAGEQYSSVAKYAGQLADAFYAYAVALNRSLTSNPYADIRNGTMILGNIGM TFEGVGGGDVTVDPDSSRTSVITMIGLNSSKLPETYGRFVINNQSIDFEPLYANEMYD VWNGRERPKVKPICGFTGNQCPPNFVRDYLAFVAIIAVFLVFAIGAAIGGVFYAIKQK QREIERQDELWHVDVGHLQIIPKKSKSEASQRSFASGPSTSTKLTLESRTETNRFSFY LYKNEMVAANKHNARPSLTEQERYQLRQMRSLDHDNINKFIGLCLNGPQLMSVYRYCS RGSLADVIERSSMQMDAFFMFSLIHDIANGLAFIHSSILHLHGYLSSKNCLIDDRWQV KISSFGIPMIRQSDEVSKKGMLWSAPEVLRNETEERTQEGDIYSFGIICSEIITRSSA FDIENRKEKPEEIIYQLKKGGFNAIRPSLLTDESLEINPALTHLIRDCWTEKPSERPP IDQVKSLLKGMNDGKKVNLMDHVFNMLEAYASNLEDEVSERTKELVEEKKKSDLLLYR MLPKTVADKLKSGLSIQPETFELVTIFFSDVVQFTVLAGKCTPLQVVQLLNDLYTIFD SIIEQHDVYKVETIGDGYLCVSGLPHRNGNEHIRHIARMSLAFLSSLAKFRISHMPNE RINLRIGINCGSVVAGVVGLTMPRYCLFGDAVNTASRMESNGKPGRIHVSSEANRLLT KVVGGFRTEARGEVIIKGKGVMETFWLLEENGSDPMKSLLKKERKNSTTSSQARSVTP TMDGFSL" CDS join(552438..552814,553236..553674,554190..554251, 558618..558690) /gene="CBG25238" /locus_tag="CBG_25238" /standard_name="CBG25238" /product="Protein CBG25238" /note="contains similarity to Pfam domain PF00046 Homeobox domain contains similarity to Interpro domains IPR017970 (Homeobox, conserved site), IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:B6IFK8" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="UniProtKB/TrEMBL:B6IFK8" /protein_id="CAR98688.1" /translation="MEQQAEPSDFSTPQSSSSSFAKSSSMDPCSYSLSETSQKVQETT VLDSKSPQISLALDSPTVDINVLNPPDAPIMDASKSGDAIPADPQQYPLPQHPPENHQ HPPGHPEYYPAFQPYYPMGFHAPETFWLAPPPGAPYYFGLPQMYPHNPYASLLANNSN EKKEPPRVAPKNEEAHSSPVSDLTPNESRDIKAFKKPFTDKQRNVMLERFRQSDRIGL EERKTLAGRIGLSAEQVRTWFANQKAREKAAKKHPQKLTLLKVNPEEKMEHRGLIFFV RRGFSKFRPNLLSNLKKSVSYNFSFQKQFNSKTNSRLQFS" CDS join(559330..559540,559713..559996,560081..560325, 560385..560648,560697..560759,560808..560907, 560952..561107,561150..561317,561611..561734, 561783..561988,562032..562130,562248..562524, 562567..562928,562985..563766,563812..564010, 564050..564323,564371..564491,564536..564611, 564658..564761,564821..564902,564947..565138, 565235..565273,566203..566391,566438..566568, 566619..566677,566906..567034,567086..567411, 567464..567588,567636..567909) /gene="Cbr-hum-7" /locus_tag="CBG_03901" /standard_name="CBG03901" /product="Protein CBR-HUM-7" /note="C. briggsae CBR-HUM-7 protein; contains similarity to Pfam domains PF00620 (RhoGAP domain) , PF00612 (IQ calmodulin-binding motif) , PF00788 (Ras association (RalGDS/AF-6) domain) , PF00063 (Myosin head (motor domain)) contains similarity to Interpro domains IPR000159 (Ras-association), IPR000048 (IQ motif, EF-hand binding site), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol binding), IPR001609 (Myosin head, motor domain), IPR000198 (Rho GTPase-activating protein domain)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WVP7" /db_xref="InterPro:IPR000048" /db_xref="InterPro:IPR000159" /db_xref="InterPro:IPR000198" /db_xref="InterPro:IPR001609" /db_xref="InterPro:IPR002219" /db_xref="InterPro:IPR008936" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR029071" /db_xref="InterPro:IPR036023" /db_xref="InterPro:IPR036961" /db_xref="UniProtKB/TrEMBL:A8WVP7" /protein_id="CAP24710.3" /translation="MSFDSISAGAMGCFPRRAHTINATDDAHTHTVAVYMHSFNPDCE NDTVHLEVHKRCTTEELIEKVLAGRSELEGQSVQDFDLFEMMGTPDGQTYKERRLDPG EYPVAVQAIWSRLPVVVDSATPKNRFVFRHRGYRAATGGTRFGSAEVASSIDAFLTKF LVQPQDREYADLCMLPELTEQTLLDNLRERFANGHIYTYIGPILVAVNPFCFFPIYNP KYARLYFQSKRLGSLPPHIFAIADVCYHNMLRIKENQCVVISGESGSGKTESTNHLMS HLISLSQKGSTGCSTEQTLLSAGPVLEAFGNAVTLTNNNSSRFGKFIKINYRENGMVS GANVEIYLLEKSRIIFQTKGERNYHVFYYLLEGADEEERKKYFLLKPNDYKYLNQNEP FALEGVNERNEFDRLRHAMSSVGFCAKTQQTIFGIISAVLLLGNITYIKRHGYHSDES GYIENEEVVDLVAKLLHIKTETLMQALTMKRHVMKTETVVLRYSVSEATNTRDAMAKC IYNSLFHYIVLRINQALLKKDFSAGKGYYIGILDIFGFEDVGAQCNSFEQLCINYANE KLQSYFNQHIFQFEQEEYLKEGISWTNIEYTDNTECVQLFQSKPYGILRLIDEESNIN NGTDDSMLAKLNQFLKNNEYYETPQKKEPAFIVAHYAGKVKYQITGFREKNKDLMRQD VLNALKSSTSSVMKTLLGIDPVAVHRWNVLRSVFRAMNAFKQSARKLQKSESAGHLRV MDSIATSPRRGSDSALSAFLRGELRCEVPDFCDTSMFNTIRNQARRTPAGKSDDKMSL LKSLQILKEAIGGRRLTKKPSSVSKQFEYSLTRLMSTLANATPYFIRCIKSNNDKIAN HFDDNIILRQLRYTGMLETVRIRRAGYSVRIEYPSFVQQYRTLLKNGRDSTVEDVKEF IQSHPSLDNDNIQYGTHKIFMRDAEKLILDDHLHRTIMQSIDTLQRWFRTILARKRYL RMKEGIVRIQALIRGSIARNEVRRKALAAQTIQCNWKTFKARQKYVSTRNSVIAIQSA FRGAALRKKIGEIPKNIGNGGVNNIKKSPFRVRKVHAVNLTKFDLNDPNSLAAFALSD DDSDSDKSTQDGLDDDISEESDAFQDDDAVDVDATFILEDTKLKLIEGAELSHHRRQS LAPTASTTKLKMLRRANSTESNNFSVSRCDDSFTFQLSPTNSKKKTVGTGKLGFQKAK KNLKALFGRKEDEEEPSPGPSFSSELTPDVFISKDHQFKMSRLHRQEICALCNRHLTN FISQAHKCQRCKMCLHKECFVFASSIPCNPTSPVRSPTRLHSPKRPWDLMPHKQRQSS SPIPTTGTFSLTKTKQQTDPGNMVVESTEDLRQFSVFIFNKTSTLSGTTSKRDTIVDA VFKKSLKSFHMELLGYEAVLSVDQSVLKYRDVITMFEGLLTKTCMEENVSFPTTLGVN AFRGFLNEFMHTQSKKKRGKEKSSMIKKVGKKRRKSDVTAVHAGHRFRADVVHVPTYC EVCNQLIWHHEKLFICVACRISCHKKCQPKVTHPCSLIGKTIDPQTNGGRFFGASLTS IVDDDHTVPTLLDRLFFAIETRALFVEGVYRKSGSLPQVRSIRKVIESTPDAESVNLE DVGVHVLTTLVKAFFRELAEPIIIFDLYENFLNVSEVEDMGERVRCLSVMIELLPKPN RAVLDRLMYHLARVADQESVNKMGCNNLALIFGPCVLRRQDSTHAQEQLNDVARQTGC VQTLIEEKLKQYKATLHNIVELEDASHKVSANLRKIEEHRRNSEPSKTSPNIGTAKQL FEEQLEFLGKQKERLLQELPPLAPVASSEDLSSSDENANASSSLSVEEYALDLDAPPV FCLLKYPTKLRPPGPSHRRRPDLDLRRKAFANSRGIVSFYTPVE" CDS join(568619..568655,569131..569600) /gene="CBG25239" /locus_tag="CBG_25239" /standard_name="CBG25239" /product="Protein CBG25239" /note="contains similarity to Interpro domain IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:B6IFK9" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR013087" /db_xref="UniProtKB/TrEMBL:B6IFK9" /protein_id="CAR98689.1" /translation="MSTSCGICYDDYDSDEQIPCIGTCGHTICDRCRLLMHSSKCPHC NRKEAFSVKHVNKQLWDLIQFSNFVFGKPQNVEDNKNLKQCTNCGEFSKKLRVCRDCC VRSGIVQKYFRGDEEVLGDEDEVCEKIRSQAMCGDCIIDGEHFRHSTENLEKFIESYL DFLRIIKK" CDS join(570051..570128,570176..570406,570452..571047, 571292..571460,571508..571545,571592..571686, 571854..572090,572141..572363,573578..573589, 575242..575388,575461..575551,575596..575814, 575864..576170,576335..576420,576466..576730, 577284..577483) /gene="CBG03902" /locus_tag="CBG_03902" /standard_name="CBG03902" /product="Protein CBG03902" /note="Predicted" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="UniProtKB/TrEMBL:A8WVP8" /protein_id="CAP24711.2" /translation="MRLLKTIKFHPTAIPGKRAMDIGTMMILIFFCFVPAFCQTQQTP LPESFTYYYQEVERQGMDVDHSALMICYKIGGEVKLVDSSNHEKGYKCEGKTATWVVD DKQTMEYCTSLIPYHIIEAKKLAHGVSCTFRRIFQHTVRRTISNVSEINLKCETGWYQ MKNKCYSTFPVKNGFEAAKDYCLKQKPEINTKIAEYYSGHLSNFIKGLTFSEAWISAP EMELAYEGSGLAPVMLLGGAYKYDTRPGTVFMFDVNSRKEKVLCEYAPPMNMAEMYLL AEMYSEIYPIHVTTTGAVFSTSNYLTIQQEGLKTNSKGAYAESFTTKNIIDRCKSIGN IISVDSHPMASIQEEFDEVQRFLKDHRFHLTSAYKNAGCQKTTYQDWDFASETLFSVY KTVHQTKEDYYSFAYEYGDCDPGWVTAKRSKTTKFCHYVSEIQVGFNFFFQIYTEKEV THAEAIAACKDLNSALTGFESFEEFEYVKNQFSDDKPGWGDHFWLGGILPCKEDCTDP SYKASWDAGVSRNTHFLNNHDHDGYPWAADADDNTISFRSDVAAFHSQNQQLFALTAI FGLSIVVAYRLYHVRNRRRSNCNNKKKQPIRKLKSEGYLEKCLPKKIAPKKPKDADVS LRPTGSDILHPAPFDNVTGTMTVPRSNEKADDSSSPHSSITYLRDPSEARISPKPAKN SAEKTTDVTVKTGSKEDDKKPKESSSSLDNRATNKLVGTQTESERKEIEQMPYSFESC ATAKFEPAQPQKGSGEKIEDSPSSKTKIEKKPEEEKKENTEEKKKKRETIENGSAERS LSEPNTTDIIVPSGTGAIIAFGNPVTPLPPIPCPTLTSPLETSSPKITEPSAALIETA VERNAESSISLDTVQSMYKVCRCRKKDRCGLLIDSEAPVYDPNLKLDIPVTKVIPVSF HKYNPPNLMDPPTDGSTEIIELPDSYITANEDEPDVTITILPHVFRSFQNYLSPMYPM LATMNAAHQHACLINHLIENYEFFE" CDS complement(join(577793..578329,578384..579165, 579212..579372,579422..579606,580901..581128, 581176..581404,581451..582040,582114..582289, 582336..583204,583256..583386,583435..583642, 583679..583920,583976..584356,584764..584826)) /gene="CBG03903" /locus_tag="CBG_03903" /standard_name="CBG03903" /product="Protein CBG03903" /note="Partially confirmed by transcript evidence" /db_xref="UniProtKB/TrEMBL:A8WVP9" /protein_id="CAP24712.2" /translation="MSEEAKEAEKSDDAVQIQHEQIVVPEYSVETEIGEQPQSDLSLT EQINETPSSSSTSARPKRNARKSVLYNNEDYELQLPGVQKEEEGVMSLESATASATPS QKNVVKRAREEGVARGSKKRKTHPRVEENNELSSQASEQLDSGLESVQHIYDDSTIQE LGTEAEIPYCGAVDDDGPPILNVSSSYNDSRVHIAGDERDDMGSFGDEDEDDFLDGQP PDLELNLLDLSPNRRRGRPRKDLGGEDETMEGSKSSGTDAEKKEKKIPGVKQQMPPKS FRMQGERVVSRALAERHFHVKLFEDEVEITENGDCYATVISGCLAYLLRKERIIELLT NEAEINMIREGGWLLEKPPRLPPLVQHKACYAFYIDGSKLTSIKDVSNDDLKPWSSSG EQYGDPVIKPNVRRHPVGRLDGRLQPIKTDPRLAELHLTEYSAWLPRLLRLRKKVKGY NVYFPRPVAFQIFYLSRDGQIYGNVLILYDYTCPGEVPVVVNLPHGNDYLRSAMIEAS DPHNAMDIDDSPGSTPVGIVQFCESAIIVFFQFEDELVNGPRGGIFLRVKPSKLGWAQ NKKLLLRYLVNEPALLDHSNCLNRRTPYIPPLIQSIGVFVYFVPSSFVANQIHHTGDG LSPWTVNLQSSGEAPSPRVRSTRKPLTQDESGQYVIIRDNTGWQQTQLCLVETMSVLA RCPRLRKRVIYVQRNNAIIVGNVCYIYEYVREGPLPGPYCKPAPSTGTPSKNQHMDQW TEEKKPLAGAGPSTSSGVPNNDVIEDDQFIDVEDIEVVEEEVIGHDTLNDEDEDVHHQ QGMMQQMPVLNTSQVMEEEIPDLPQEDVLNDGYDLEFDDDPLTQQENPAPYYETPRQL ETGHIYLTVRHKRIASTFEAVLEWIANTNVVEERGLLNYAKPGHPPIVRNARAYAFFV AGTAIFPHDINRDDFSPWSHNGNAQNPTCYRTKVRKTGVVCDDAESQFRIKDVDYKTC PFHLVFLYSINPREPRLRKKIYYMMETESRLVVSHALIMYDYNMEGDLPRMHGGYLKR FAKRPGKKPPMQIHDIDNDVSDMSESEKECPFIVPPQMCEDGSMYLQLHDMDFWNDRN RQLHFLVNKPALIDSLNCLNTRVPSCPPTTTSKAAFVFFVDGFEVDARNLTCDNLVPW SENTSSNPNGITKRPKSSKCPLALNREGQLRVWKTPANRGDHVEYQLHVYTATLPRCP RLRKKVTYVLKNGHQVGNAMIIYWYTESGEMPTPINMNHGNGAEYTLQRLPPHIREDV LRYLSRMTPPEVAKMILDKYGIQVNTKMLYYMRRREIISATGDSMRASELHVQDELKN GMIEPSGYIDDWAANIDPSAPSTSAEGSKPKLLHDEVLDEGDIQVARTEEIEEPSHSQ VRKSMDGSVHHHSHHHHPMSHQHTHHLNDSKNFMRPMQPTPGMVRGSSRNEAIWRIAK NSFGTAADNDTFDLLFKMLFDKNEQRLLQIVNQTFGVEILAGEEVMDNGEMMHMGNEG DIVEEIVEEEIVQVADEVPGNVPLQEEKVYLDDKELSGETRRILRFFETNQFVSGGME QVIVEEQVNDQMISDALVGGVIIDEEVDPSAVIIGDPHIDP" CDS complement(join(586126..586307,586355..586646, 586694..586855)) /gene="Cbr-rab-11.1" /locus_tag="CBG_03904" /standard_name="CBG03904" /product="Protein CBR-RAB-11.1" /note="C. briggsae CBR-RAB-11.1 protein; contains similarity to Pfam domains PF00071 (Ras family) , PF04670 (Gtr1/RagA G protein conserved region) , PF00009 (Elongation factor Tu GTP binding domain) , PF00025 (ADP-ribosylation factor family) , PF08477 (Miro-like protein) contains similarity to Interpro domains IPR002041 (Ran GTPase), IPR000795 (Protein synthesis factor, GTP-binding), IPR013684 (Mitochondrial Rho-like), IPR003578 (Small GTPase superfamily, Rho type), IPR005225 (Small GTP-binding protein domain), IPR001806 (Small GTPase superfamily), IPR003579 (Small GTPase superfamily, Rab type), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR006762 (Gtr1/RagA G protein), IPR020849 (Small GTPase superfamily, Ras type), IPR002078 (RNA polymerase sigma factor 54, interaction)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WVQ0" /db_xref="InterPro:IPR001806" /db_xref="InterPro:IPR005225" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8WVQ0" /protein_id="CAP24713.1" /translation="MGSRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI GVEFATRSISVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHVTYENV ERWLKELRDHADQNIVIMLVGNKSDLRHLRAVPTDEAKIYAERNQLSFIETSALDSTN VEAAFTNILTEIYKSVSNKHVGSDRQGYGGGGGTIIPAPPTEPPKKQCCNS" CDS join(587872..587882,587958..588057,588283..588480, 588527..588743,588789..588997) /gene="Cbr-rpl-7" /locus_tag="CBG_03905" /standard_name="CBG03905" /product="Protein CBR-RPL-7" /note="C. briggsae CBR-RPL-7 protein; contains similarity to Pfam domains PF08079 (Ribosomal L30 N-terminal domain) , PF00327 (Ribosomal protein L30p/L7e) contains similarity to Interpro domains IPR012988 (Ribosomal protein L30, N-terminal), IPR018038 (Ribosomal protein L30, conserved site), IPR000169 (Peptidase, cysteine peptidase active site), IPR016082 (Ribosomal protein L30, ferredoxin-like fold domain), IPR005998 (Ribosomal protein L7, eukaryotic)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WVQ1" /db_xref="InterPro:IPR005998" /db_xref="InterPro:IPR012988" /db_xref="InterPro:IPR016082" /db_xref="InterPro:IPR018038" /db_xref="InterPro:IPR023106" /db_xref="InterPro:IPR035808" /db_xref="InterPro:IPR036919" /db_xref="InterPro:IPR039699" /db_xref="UniProtKB/TrEMBL:A8WVQ1" /protein_id="CAP24714.2" /translation="MAPTKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKS QYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHQVAFVVRIRGINQLHPKPR KALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDG NRVPITDNTIVEKSLGKYNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTK KTNHFVEGGDFGNREDQLNNLLRRMV" CDS join(589540..589665,589718..589861,590026..590127, 590180..590242) /gene="CBG25240" /locus_tag="CBG_25240" /standard_name="CBG25240" /product="Protein CBG25240" /note="Predicted" /db_xref="InterPro:IPR033468" /db_xref="InterPro:IPR036282" /db_xref="UniProtKB/TrEMBL:B6IFL0" /protein_id="CAR98690.1" /translation="MLAYSRGQDFSWLREDRKIIEDFGLVQLYFWRNWIVPQMQKRTR RRVRGYGLSGKSAGKEVTIRTEAMLEALASLLNSNKYFFDVNEPSWLDCKAFAVLVQF KYTPLHNEARLKQFMKDRTPNLMTFVTRMKEEFWSDWVTISD" CDS 594035..594388 /gene="CBG03906" /locus_tag="CBG_03906" /standard_name="CBG03906" /product="Protein CBG03906" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVQ2" /protein_id="CAP24715.2" /translation="MILFILLQFALIVHLVLVCGGGKKKKSSGASKEPAKSKMNAPQA NSVKSAVKDTEQKATKEPAAPPPKPPSPPKPVVEDTRVAEMMPESVKEDEMKGGIKLP APPKNLVGYGNGIYS" CDS join(595240..595416,595477..595714,595760..596015, 596058..596373) /gene="Cbr-col-45" /locus_tag="CBG_03907" /standard_name="CBG03907" /product="Protein CBR-COL-45" /note="C. briggsae CBR-COL-45 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)" /note="Predicted" /db_xref="GOA:A8WVQ3" /db_xref="InterPro:IPR002486" /db_xref="InterPro:IPR008160" /db_xref="UniProtKB/TrEMBL:A8WVQ3" /protein_id="CAP24716.1" /translation="MKSLIDDEDVEVSRFRRNAFSAVALSTSCILAIVILTPIAYQAI QRIHSNLLNDAHFCQSRNRDLWTETMEMARSRGRDEELVARTKREVKGTWLFGQYIPD RSSRNRRQQYAEAQAAGGGAPPPAECRRGPPGPPGDNGVDGSDGKDGAPGTDGKNGEQ PQAPSDAGYQEGPSDTVEACVRECPPGPPGPTGAPGDKGARGYPGESGEPGTPGKAGP KGNAGPAGPPGPPGYPGRPGETGGNGKTLAGEAPPGPPGRQGEMGPQGPPGPPGPRGK DGAGGEKGAPGDQGNPGPYGKPGQPGEPGSDGSAGEKGSCDHCPPPRTPPGY" CDS join(597266..597421,598145..598634,598689..598774) /gene="CBG03908" /locus_tag="CBG_03908" /standard_name="CBG03908" /product="Protein CBG03908" /note="contains similarity to Pfam domain PF01607 Chitin binding Peritrophin-A domain contains similarity to Interpro domain IPR002557 (Chitin binding domain)" /note="Predicted" /db_xref="GOA:A8WVQ4" /db_xref="InterPro:IPR002557" /db_xref="InterPro:IPR036508" /db_xref="UniProtKB/TrEMBL:A8WVQ4" /protein_id="CAP24717.1" /translation="MKMSANPTPTNGTCAYDGLTMADPYDLTAYYQCCKNQWFLKYCL EREIFDKYKLTCILSDSPVPTPTRNHHHFRPTTLVCTPGDRRQNPFDNSKFDECVDGI HWVTESCQFGFKFNSNTKQCQYLPTTTDCSVGDTRPISNGDPSKYLLCDGNEWEIRDC SSGFIYDQNLKKCIQKYTTPGVPTQAPNGFCQESMSQEGYKPNPQNCQTYFQCVHGEW QLRNCGTGTKWMQSIIACDYYNGVC" CDS complement(join(598854..598976,599026..599103, 599152..599259)) /gene="CBG03909" /locus_tag="CBG_03909" /standard_name="CBG03909" /product="Protein CBG03909" /note="contains similarity to Pfam domain PF01423 LSM domain contains similarity to Interpro domains IPR001163 (Like-Sm ribonucleoprotein (LSM) domain), IPR006649 (Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type)" /note="Predicted" /db_xref="GOA:A8WVQ5" /db_xref="InterPro:IPR001163" /db_xref="InterPro:IPR010920" /db_xref="InterPro:IPR034110" /db_xref="UniProtKB/TrEMBL:A8WVQ5" /protein_id="CAP24718.1" /translation="MSEGRSRDLIESQATEPAEKSEVHKKVQEYIGKRYEVQLTDGRF IRGTMIATDKDANMVFNKADERWTVKADRPVRFLGQAMISKKYVKKMCLLPDPKETEI " CDS complement(join(599675..599863,602947..603159, 603207..603350,603412..603644,603695..603909, 604124..604388,604437..604586,604633..604757, 604802..604981,605032..605155,605200..605439, 605489..605579,605622..605702)) /gene="CBG03910" /locus_tag="CBG_03910" /standard_name="CBG03910" /product="Protein CBG03910" /note="contains similarity to Pfam domain PF12578 Myotubularin-associated protein contains similarity to Interpro domain IPR022587 (Myotubularin-associated)" /note="Predicted" /db_xref="InterPro:IPR010569" /db_xref="InterPro:IPR029021" /db_xref="InterPro:IPR030564" /db_xref="UniProtKB/TrEMBL:A8WVQ6" /protein_id="CAP24719.2" /translation="MQFGESEQGKVICTKVRLRFIPIILKERDVPQRSKFFDDFYDVP LTAIAKMEVALVRGGSRGKPDKFHRIEYSISSMETASVIRLTLKDMRVVTIDLRRSQN GTHLANQILFFSKSGPIEKMTQVGAAMEDRGQKAKMPYNGYDAWHAELQRCQQKTDSS SKWNILALHKDGLNPPGQGYPLYVVVCNILSRQDLDRQMRHFKHGRFPIWVWSRANGN GSLFISADHEHNVATSEILAKVQDSIARCHPEGEKPHILKLDSGFVARIGKAFDNLLS LCAIDSYEQYVSRQRSWSTKVHRTGWLHAVQSCLEVTHETVRWLIDKDRSVILQEEDG KDLSIVVASLVQICCDPFYRTTTGLHQLIEKMWIALGHPFGERLLSTEQEKKQLTKMP SSKTGINPTWLLFLDCIAQLHRIYTFEFTFSPHVLIALWDLSLTGMVPSMTCNNLQEQ LVAHVGGGPFPLDRYYEKSYLKMFGNVWHDSSLFIESIKKNQPISPHSKFLRCESIRP PTEFCDIHLWSDCYLRWILPANGKNSGNLSDEQALDEKMIEMAKKWRSTEWKKHLELP EEYSSAYPYSIPEISRPIMELNDSDMRRPDDLDSISLDSTFNNSISFTQTPVRNNATT EPIFDQSTLERRNRKAAETIGSESPVIVMRPKEQIVGFSKYAFDETPSRRQHSKTIET PILDSFPAKYEHAYQPTPARRSNTVRSDRPIPPPRPAGLTPSRPEAILRVHIDHHDDT SPTTRVTRF" CDS complement(join(606588..606626,606807..606941, 607361..607447,607497..607701,607746..607907, 607962..608281,608600..608783,608826..608981, 609097..609173,609222..609467)) /gene="Cbr-csk-1" /locus_tag="CBG_03911" /standard_name="CBG03911" /product="Protein CBR-CSK-1" /note="C. briggsae CBR-CSK-1 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR001720 (PI3 kinase, P85 regulatory subunit), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR000980 (SH2 motif), IPR008266 (Tyrosine-protein kinase, active site), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WVQ7" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR000980" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR001452" /db_xref="InterPro:IPR008266" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR020635" /db_xref="InterPro:IPR035027" /db_xref="InterPro:IPR036860" /db_xref="UniProtKB/TrEMBL:A8WVQ7" /protein_id="CAP24720.2" /translation="MNNGNSYNHHHFPTSIPISCSSHSIQSQSRMNTLNANRDLLSPG NDVIVTRTVSPSFYSHGMPSRDNVFRKDDHVRILGNTSDPAWYRARNASHEEGLVHAD CVVRVNGQSYENGIVRMRASGCDPGAASTASSTSSHHSSVANNQPWFHSMISRENTEK LLRGKPDGTFLVRESTNFPGDFTLCMAYHGKVEHYRIEQTSGGQLTCDKEEYFSNLTQ LVSHYKRDADGLCHRLVTPIICETATFSSNGSSSFGSSSTVDLEDRTSVFRHAGLVIP SNEIDVGDTIGHGEFGDVRLGTYKNRKVALKVSKRHGNGMLDSLLDEAKFMVGLSHPN LVTLVGVVLDDVNVYMITEYMANGNLIDLLRSRGRHALERRQLMMFAIDICQGMCYLE SKQIVHRDLAARNVLLDEDLVAKVSDFGLAKKANSQSNDSASGKFPIKWTAPEALRHS QFTTKSDVWSFGILLWEIFSFGRVPYPRIPIQDVVRYIEKGYRMEAPEGCPPEVFKVM NETWALSAQDRPSFGQVLQKLTSIRKTV" assembly_gap 609902..610564 /estimated_length=663 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(611358..611546) /gene="CBG25241" /locus_tag="CBG_25241" /standard_name="CBG25241" /product="Protein CBG25241" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFL1" /protein_id="CAR98691.1" /translation="MASRTFSLLPLTNRLRMPLGGLPDHLVLPTCSFYRNVSDFSKGP TSAGLLSLFSWCHFIGFL" CDS complement(join(612498..612700,612867..612960, 613010..613380,613426..613532,613841..613968, 614011..614229,614277..614372)) /gene="Cbr-pgs-1" /locus_tag="CBG_03912" /standard_name="CBG03912" /product="Protein CBR-PGS-1" /note="C. briggsae CBR-PGS-1 protein; contains similarity to Interpro domain IPR016270 (Phospholipase D, phosphatidylserine synthase type)" /note="Predicted" /db_xref="GOA:A8WVQ8" /db_xref="InterPro:IPR001736" /db_xref="InterPro:IPR016270" /db_xref="UniProtKB/TrEMBL:A8WVQ8" /protein_id="CAP24721.2" /translation="MEVLECEMPGIPIESSNLEILETPTQFYEKLLELTTKSERRIAL SSLYLGEGLLEKQLVSTIRERMDQVEDIDVTILLDLLRGTRRSSDGESSVTVMKPISD RAKIFLYHTPELNGLVKRVLPQRADEIIGLQHMKLYIFDDNVLISGANLSYSYFTDRT DRWFLFRNCKTLADFFYEIITTVGESSFIVQNDEVVPSSKCDVHPYLGGSQSYRDLLK LRVESVIEKYREARKSDKTVSETWIYPILQMGLLGIHQEYNLLNKVFAMKDAQIKMTM ASGYFNFIRDYEDLILNEGTYQLDILTASPFANGFFESKGFSKYIPPLYSKISEQFLL KMQRRYRSVHRDLEAQVMIVTTDPNLMSRLREEKDRLFKFSTHLDMVALQQPEHHIPP IIRVISRLVRSFL" CDS complement(join(614565..614727,614773..614955, 615003..615165,615214..615352)) /gene="CBG03913" /locus_tag="CBG_03913" /standard_name="CBG03913" /product="Protein CBG03913" /note="contains similarity to Pfam domain PF03256 Anaphase-promoting complex, subunit 10 (APC10) contains similarity to Interpro domain IPR004939 (Anaphase-promoting complex, subunit 10/DOC domain)" /note="Predicted" /db_xref="GOA:A8WVQ9" /db_xref="InterPro:IPR004939" /db_xref="InterPro:IPR008979" /db_xref="InterPro:IPR016901" /db_xref="UniProtKB/TrEMBL:A8WVQ9" /protein_id="CAP24722.2" /translation="MEVDESKKTDGSIGWIPYIPKNVEPRDSPLLDISNQAIWTVSSC KNGYGIDELMSDNVEKYWQSDGPQPHTIHLEFQKKTDVAFMMFYLDYKNDESYTPSKI QIKLGSSHQDIFFRNAQSFNEPQGWCAIDIRDKMERPQRVFWIQIQVIQNHQNGRDTH IRHVRVLGPKRSRVSPTNRIFTGEPHGPFPEHNLVDDEEEFAAFVDRSLVHLSLR" assembly_gap 625282..625716 /estimated_length=435 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(629940..630271,631588..632547,632597..632852, 632903..633028) /gene="CBG03915" /locus_tag="CBG_03915" /standard_name="CBG03915" /product="Protein CBG03915" /note="contains similarity to Pfam domain PF04636 PA26 p53-induced protein (sestrin) contains similarity to Interpro domain IPR006730 (PA26 p53-induced protein (sestrin))" /note="Predicted" /db_xref="GOA:A8WVR0" /db_xref="InterPro:IPR006730" /db_xref="InterPro:IPR029032" /db_xref="UniProtKB/TrEMBL:A8WVR0" /protein_id="CAP24723.1" /translation="MGEAHKLENIEKKNKDIGLFGECLRFRIEQHRRGFLNTEEEGMV EKKKRKMERSGDRHIIDVERMDTDLWQVVYSLCVCSAIRGEETTKTNPFVFLGRWSFG FVSQFTENLLFRFTCKHPALHVHMTGSYGHMFVDISDLPAPSRHYLAVMGASRHRCLS LIDHHRRKFLEKGGNPYWLLGVDWAHMKYRKLDYLNRMICHRPWMIHWKNFAVLITRR SPDGGPAFFSICSLHHAIGIMSMTHAMCTVVCCIGLERRVDLTQEEIDFLNIDDIDYW EARLSELFRKVADRPETNVEYMISEMKKTEKGMKRPAAKLCAMTTETIESLINAPPAT YSSNRKSYSPVLLLANIDENGDDILEKEPPCEYPIYSHHRTFGYIDFRKRPEKDIPPF RVEEFGWDHVYNTMNEYTDTLTSRLDHMFDHIRTLTGNMSSASNSSGEGSPADQNEID TTAFREAVWNYTQGLYGVRVDDYDYSKINRVLDKGTKTFIKLAACYPHKLTTEFTKAL PGFKDSEKIHVVMMIAMARFQASMFHYTRAVCNYNAMCLSKKGWKKPLD" CDS complement(join(634501..634613,634973..635084, 635131..635222,635963..636011)) /gene="Cbr-nlp-40" /locus_tag="CBG_03916" /standard_name="CBG03916" /product="Protein CBR-NLP-40" /note="C. briggsae CBR-NLP-40 protein ;" /note="Predicted" /db_xref="GOA:A8WVR1" /db_xref="UniProtKB/TrEMBL:A8WVR1" /protein_id="CAP24724.1" /translation="MKLLILLSCVAAVVVFAAPSAPGLEEKLRALQEQLYNIEKENGV DVKQQQPAERDTFLGFVPQKRMVAWQPMKRSMVNEDSRATLLHAIEARLAEVLRAGER LGVNPEEVLADLRGRNQFQ" CDS join(636994..637035,637093..637212,639270..639560, 639608..639709,639912..640052) /gene="CBG03917" /locus_tag="CBG_03917" /standard_name="CBG03917" /product="Protein CBG03917" /note="contains similarity to Pfam domains PF08241 (Methyltransferase domain) , PF05891 (AdoMet dependent proline di-methyltransferase) contains similarity to Interpro domains IPR008576 (Protein of unknown function DUF858, methyltransferase-like), IPR013216 (Methyltransferase type 11)" /note="Predicted" /db_xref="GOA:A8WVR2" /db_xref="InterPro:IPR008576" /db_xref="InterPro:IPR029063" /db_xref="UniProtKB/Swiss-Prot:A8WVR2" /protein_id="CAP24725.1" /translation="MSSRLHNGNDVYEKAEEYWSRASQDVNGMLGGFETLHTPDITVS KRFIEGLKKRNLFGSYDYALDCGAGIGRVTKHLLMPLFKKVDMEDLVEELIVSSEQYI GSDPRIGEKFIEGIQTFAPPERRYDLIWIQWVSGHLVDEDLVAFFKRCVKGLKPGGCI VLKDNVTNHEKRLFDDEDHSWTRTEPELMEAFNGADLDMVVKTIQTGFPKEIYPVKIF ALKPRRQETSDDN" CDS complement(join(642211..642335,642386..642580, 642627..642708)) /gene="CBG03918" /locus_tag="CBG_03918" /standard_name="CBG03918" /product="Protein CBG03918" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVR3" /protein_id="CAP24726.2" /translation="MAGRQKSEARSRNFENSGRSIASVLSKGCQKISIFLYVDWALRK NANENEEGKSSGTVGKFENEYQRKKLISDGSVKFADFEKNVQSITCVRVTSKQQSTSS SAHRHRLRQKWTKREAPMPFQPVRQQRKRII" CDS complement(join(643912..643952,643994..644195, 644293..644394,644447..644551,644602..644726, 644944..644974,645394..645528,645569..645759, 645824..645911,645969..646033,646129..646269, 646315..646397,646440..646516,647316..647408, 648241..648401,648501..648657)) /gene="Cbr-avr-14" /locus_tag="CBG_03919" /standard_name="CBG03919" /product="Protein CBR-AVR-14" /note="C. briggsae CBR-AVR-14 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) (2)contains similarity to Interpro domains IPR018000 (Neurotransmitter-gated ion-channel, conserved site), IPR006028 (Gamma-aminobutyric acid A receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain)" /note="Predicted" /db_xref="GOA:A8WVR4" /db_xref="InterPro:IPR006028" /db_xref="InterPro:IPR006029" /db_xref="InterPro:IPR006201" /db_xref="InterPro:IPR006202" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR018000" /db_xref="InterPro:IPR036719" /db_xref="InterPro:IPR036734" /db_xref="UniProtKB/TrEMBL:A8WVR4" /protein_id="CAP24727.2" /translation="MWYYRLTTLLLIMSTLQTVRSKRKLKEQEIIQRILKDYDWRVRP RGMNATWPDTGGPVLVTVNIYLRSISKIDDVNMEYSAQFTFREEWTDQRLAYERYEES GDTEVPPFVVLATSENADQSQQIWMPDTFFQNEKLARRHLIDKPNVLIRIHKNGQILY SVRLSLVLSCPMSLEFYPLDRQNCLIDLASYAYTTQDIKYEWKNTKPIQQKDGLRQSL PSFELQDVVTDYCTSLTNTGEYSCLRTRMVLRREFSYYLLQLYIPSFMLVIVSWVSFW LDKDSVPARVTLGVTTLLTMTTQSSGINAKLPPVSYTKAIDVWIGVCLAFIFGALLEF ALVNYAARKDMTQVSQRIRQMKQLPTDGYRPLSASQGRSSFCCRIFVRRYKERSKRID VVSRLVFPIGYACFNGEYSCARVVLKLRREYSYYLIQLYIPCIMLVVVSWVSFWLDKD AVPARVSLGVTTLLTMTTQASGINSKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVVN YYGRKEFNDQKKKGGIGDCVCPPGQRSTRLDSSSYIGVGRIAIVKRIRELLSVKMKIS RKVDLMSRLTFPLTFFSFLVFYYQAYVKQSRD" assembly_gap 649683..650041 /estimated_length=359 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(653508..653597,653651..653796, 654021..654079,656357..656360,657218..657304, 657355..657646,658110..658114,658590..659062, 659107..659777)) /gene="Cbr-hpo-40" /locus_tag="CBG_03920" /standard_name="CBG03920" /product="Protein CBR-HPO-40" /note="C. briggsae CBR-HPO-40 protein ;" /note="Predicted" /db_xref="GOA:A8WVR5" /db_xref="UniProtKB/TrEMBL:A8WVR5" /protein_id="CAP24728.2" /translation="MSSDLHEALQQAKSELTLNPNESDVRTGGLFVYKHKDGSCYRCM VLSEVNSDQNERKYEVAFLDRIQIIVLKLKYLFVMKDLSLEKFPCSLHVARLVGVTMF RPGYVTENNNEIRNFYSDKIRKKTGVKALIYMKNMDERKLVIDFLSLSGNSLTSSEEI KKIHGHSALSERDPYPLTYQQLINQEMLPLEFPESVPNKENNQNELVIANELGNRDAD ESDDISLDLSDLKISEPITLNIVANSECAFGRSSIQKFLDQHRAMTNQLPLKKPGDGA SKESLPIEVVNVAPQVNVVETAEKYTTDARLNDSVSSLRSGTISQTRSSNVTPQPTFD DLLSEEATPKKSAPNLNGSSDGWDTPKKSPPKMEGSKEFGFQKPLLVRRGCPKRRPDL GRPRKSLGRRKKASARSIEEKPREASAGRGRPRKCDYGQQVAYFTTSCVFFFNFLFFL ALFQQITHFSRVFSIFPSISGDMNISNASNDTIQMPQWFIDPNKTDCELVIKNKREGF GVLSGATNSAINRFDRAEGALSTGLSNDTGADENINPIIKEMASSFIKDVTDAASQKN RVAFKVEVLAMEAMINKIPGEANKIFWKSKLAEAEKLNEMFN" assembly_gap 658527..658536 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 659790..660843 /estimated_length=1054 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(661362..661457,661540..661892,661942..662806, 662857..662987,663054..663589,663637..663826, 663934..664108) /gene="CBG03921" /locus_tag="CBG_03921" /standard_name="CBG03921" /product="Protein CBG03921" /note="contains similarity to Pfam domain PF00855 PWWP domain contains similarity to Interpro domain IPR000313 (PWWP)" /note="Predicted" /db_xref="InterPro:IPR000313" /db_xref="InterPro:IPR035496" /db_xref="UniProtKB/TrEMBL:A8WVR6" /protein_id="CAP24729.2" /translation="MDTSEPNCSSHNFQPNDLIWAKMKGFPPWPAKVLERTEDTPARR IPVMFFGTLETSFMKPTDLSDYEAHRSDHEIPRKQKDFNKAVQEIRKAAGIESDSDEI NFPIMERKSPPSSPTAGRKRQTSGRFMDAILAGPDKMRGNRSGSASTKTRSRASSNAS ATKVLRDMIRKERRHRMNSESSHGSRRKLLNNALLSGGGIPSTSDAFPDYADSTDFNA LFGDAILGNFDLGDDSKSYKSKRSRGSSKVFEDIFSRSRHRSGSASGRRSRMISLSGF SGVSDMFDELFNNQGDLDNHADQLILTLNNMPSDGSIDRPLSPELLTLNPLDRPAVEF CDQCGYECRAQNGVWSCKSAHCGVIKTQGGATVRGILDETIRIPKLEVKTECISDNSS EKTELPVVLPAKRVRKPKRNSDDDESDDEDASKRSKAVIKKKKKVQVLSPRSRTSSPT PQTPSATVLLGRSNSPTSSSHRIRDRARPKHYKVEKTPVISESGHRHCVNCNGQVRPQ MCGGNRHRWRCVDKKCRKWYGWVRSHEEIPKNTGRKKMTTFKSPITKPMKPIKPRKEE EDDGYTLKRKVGRPSKHDLKIRLRLQKEAEEKQAVVNAARAAQMLSDPPVEMSPGGQV VPQPRRKYTKRKKDGLGGANGSKRDFSPFDEDVKHRPASPISEQTASYRPSAMEKRAR WWTGEKRRVDASPEREFGTTGADSTAAFRMMAHAVRSAAVTRADEVGTVNGSLDLLMD SLIGSMGPLLANLTRLPAFRDDNQLAQQLWNASAVHIPTFQ" CDS join(664981..665522,665580..665877,665920..666054) /gene="Cbr-sir-2.4" /locus_tag="CBG_03922" /standard_name="CBG03922" /product="Protein CBR-SIR-2.4" /note="C. briggsae CBR-SIR-2.4 protein; contains similarity to Pfam domain PF02146 Sir2 family contains similarity to Interpro domain IPR003000 (NAD-dependent deacetylase, sirtuin family)" /note="Predicted" /db_xref="GOA:A8WVR7" /db_xref="InterPro:IPR003000" /db_xref="InterPro:IPR026590" /db_xref="InterPro:IPR029035" /db_xref="UniProtKB/TrEMBL:A8WVR7" /protein_id="CAP24730.2" /translation="MTSVYESLLSEYPDKGVVGKPEVNPMFPTYLKNQCFQIRDTEDQ MIEKLRVLTNHFRNAKDTEKPIFVLIGAGVSTGSKLPDFRGKQGVWTLQAEGKHAEGV NFQVVRHLKFRFNLQSLVRVQARPGVSHKCILALHKAGYIKTIITQNVDGLDRKVGIP VEDLIEVHGNLFLEVCQSCFSEYVRENIVMSVGLKPTGRNCEGNKKTGRSCRGKLRDA TLDWDSEIDHKHLTKIKKTWKESSHLLCIGTSLEIIPMGSLPVDAKARGIKTTTINYQ ETAHEKIVETAIHADVKLILYSLCHSLGVEVDLGNDLPDEVPVPLEIC" CDS complement(join(666681..666718,667152..667299, 667536..667679,667726..667821,667870..667936, 667986..668148,668202..668523,670005..670091, 670145..670238,670378..670439)) /gene="Cbr-unc-94" /locus_tag="CBG_03923" /standard_name="CBG03923" /product="Protein CBR-UNC-94" /note="C. briggsae CBR-UNC-94 protein; contains similarity to Pfam domain PF03250 Tropomodulin contains similarity to Interpro domain IPR004934 (Tropomodulin)" /note="Predicted" /db_xref="GOA:A8WVR8" /db_xref="InterPro:IPR004934" /db_xref="InterPro:IPR030137" /db_xref="InterPro:IPR032675" /db_xref="UniProtKB/TrEMBL:A8WVR8" /protein_id="CAP24731.2" /translation="METPASQPPPPMFPRSRIYHSYYSEEKTFSAPSANTQQGNQLPS KVYNKGLKDLEDNDIEGLLSKLSIDELEDLNNDFDPDNSMLPPSQRCRDQTDKEPTGP YKRDNLLKFLEEKAKTEKDWDDVCPYTPGVKRGKVYDSDSGRNSEEPEVGKMEMPIEI DLDDDEEELECALVSAPEKDLVDLAGILGMHNVLNQPQYYNALKGKTQDETTGTTFNG IIQSYVPRIVPDEPDNDTDVESCINRLREDDTDLKEVNINNMKRLSKERIRTLIEAAC NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAKLLRSTLVT QSIVEFKADNQRQSVLGNQIEMDMMMAIEENESLLRVGISFASMEARHRVSEALERNY ERVRLRRLGKDTNV" CDS complement(join(676052..676126,676174..676777, 676827..677391,677436..677571,677629..677709)) /gene="CBG03924" /locus_tag="CBG_03924" /standard_name="CBG03924" /product="Protein CBG03924" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVR9" /protein_id="CAP24732.1" /translation="MPPPNFMESPNTVQTSLYGYDKSKRVQMNSLRGKPILVLRGEPA GSKAQFGGGSKFSKKWIDRSNHMPQPVPNKPMYPSYTHFHHQYSSAKQTPIPPISLPS TPTIPPGRSAFFPQSPHRRGSRRPPFSPISRFAPTSPKSLEEEMTVKRLFDKLEVSTP PPTSSSSSFANITSDITLLELHPKTSAKTFTTTSICVSDTEITSTSPDSSNRPSLLDT PKSLSESNRTFSETTRLDSETTDDEQSSICTTSRTAEKTSRHICPDEAQCIIFRNGVC ADDLMERQNMIQWYNELIQWRHEVVTRRCFGPPRCHPPPLTVTIIGASRAQRANSFQR IGNIHPFQMEAMDHVRRRMDAKKSNRLVPADLPLPAPHEFMANAKCMEPHLFIEYCYQ LTAAAYMDTGLNPPSRRPPIPPRIDPIQQHTSRESICSSASEFSSDGEYSDDSEDTKA ERLRQKMERHRKRERRLQRIFQRRQVLDEIDEADDD" CDS join(679958..680074,681718..681862,681905..682161, 682211..682482,682534..682597) /gene="CBG03925" /locus_tag="CBG_03925" /standard_name="CBG03925" /product="Protein CBG03925" /note="Predicted" /db_xref="InterPro:IPR039962" /db_xref="UniProtKB/TrEMBL:A8WVS0" /protein_id="CAP24733.2" /translation="METSEIIETSRFPPPVGGYNVLVSLKTFESQNRKEIEDEAKKKQ DRPLNQTPSQIKANIGQPAGEPKPATNQTTPAKNETPNKDDDDDDVKFNINIKKPEEK KDEFDDDEENPLAKITMKPRNKNGPGKKVAAGGQPKPAEKNPGKAMKTKEEVGPERPF LAPNEKQYGVSCYQFEPSQQQAAAAAAPPKKVPMQKSTDGPRTAATRTIATAPTQHTA PSAAPSATLLSATTPIPQVSIIPIADTNTKSTISLTGKNKPKTVEQERTNNDNAVEKT QKDGGDGN" CDS join(682722..683111,683159..683305) /gene="CBG03926" /locus_tag="CBG_03926" /standard_name="CBG03926" /product="Protein CBG03926" /note="Predicted" /db_xref="InterPro:IPR000535" /db_xref="InterPro:IPR008962" /db_xref="InterPro:IPR013783" /db_xref="UniProtKB/TrEMBL:A8WVS1" /protein_id="CAP24734.1" /translation="MIIVSFSSSDTTSSEAPYSATSPILTSTGQPTSSSSISTISCGS PDKSDEIVDVTFSPNRTFFFNAPFDINYMTFFKVRHPEYRRIAYRVSLEKSEKSTIVL PESNGMMEEKDWDGNVKIGYTEFEFDKLNFKNDSITIEWVNIPKEAQREAGFECFAVW FGEEVTPKNHTLKVQYNS" CDS complement(join(683367..683556,683606..683739, 683789..683875,683922..684176,684759..684813, 684862..684983)) /gene="CBG03927" /locus_tag="CBG_03927" /standard_name="CBG03927" /product="Protein CBG03927" /note="contains similarity to Pfam domain PF05705 Eukaryotic protein of unknown function (DUF829) contains similarity to Interpro domain IPR008547 (Protein of unknown function DUF829, TMEM53)" /note="Predicted" /db_xref="InterPro:IPR008547" /db_xref="InterPro:IPR029058" /db_xref="UniProtKB/TrEMBL:A8WVS2" /protein_id="CAP24735.1" /translation="MQNPKSIVTYGKKDTVVALLGWAGAADKNVAKYAGIYQKKGYTT IQYTAHAAAKGWGTKEGREVENLAQTLDSVLINPSNRLIFHVFSMNGFLTLTSLDSQY PELKAFEKCDGLFLDSCPACFAFSFDNMYKHSLVMNHVYDGLIKNSNFLVGNFYWMYK KWETTRFGSRLLLDELMIIAGICSMEDANPFFYLLNNPHLPPIIYSVFSDADIVCSAD EINSFNQLASKRSDKRREVVITRLKDSAHVEHFKKHPKLYLERMEEFLQKVEKFRNGG NSKL" CDS complement(join(686361..686523,686572..686705, 686752..686893,686940..687062,687112..687243, 687289..687421,687481..687631)) /gene="CBG03928" /locus_tag="CBG_03928" /standard_name="CBG03928" /product="Protein CBG03928" /note="contains similarity to Pfam domain PF05705 Eukaryotic protein of unknown function (DUF829) contains similarity to Interpro domain IPR008547 (Protein of unknown function DUF829, TMEM53)" /note="Predicted" /db_xref="InterPro:IPR008547" /db_xref="InterPro:IPR029058" /db_xref="UniProtKB/TrEMBL:A8WVS3" /protein_id="CAP24736.1" /translation="MLATRRLLPKLVAVTSSSTAATSSSGSQKRKYFTRHVPEPKMQI HLPKSEDVTVDSIVLSDNHHDEKKPVVLMVGWAGANPKHIDKYIKIYNDEGYRVVSLC PPCYHYSIPNSRVGFYISPLFRAVDSKAGDFRSFSQCPIVIHSFSMNGVRGLISFWKW TEAEEKPELRGRIKGIIFDSAPSRPYGKQDATAMVISTPPIDALERWISEQTRISMLT WFLNLRATLQIPLLAVVPFLRSFMSIYYYLQTHITLPRDQLYLYSKADTMIKAKHVEK FINKQKEKGNSVTAIDFVDSDHVAHIRTHPEEYRSACLNFVRHIEATFQ" CDS complement(join(688207..689159,689205..689282, 689332..689498,689544..689708,689754..689864, 689913..690127,690176..690283)) /gene="CBG03929" /locus_tag="CBG_03929" /standard_name="CBG03929" /product="Protein CBG03929" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVS4" /protein_id="CAP24737.2" /translation="MDELTRISRNVSEEIERKFSWNRDIIVVLHPRSSKENEKECGNH LIAVINAVRNSIHIEQNESHPNTNLVQYIQSIPDSLPEDRVVYWNSRVFGEVLTMNRS KALKKLDSSDVLRPFKVCHTSGKFLNNYGPVKQFLDFSIDEHEVDHDSLKDALTEVLG GSMKFSLFQFVVKCVIDSQYCYHCLGLILNSLENSYLVSNKMMKFGFDWRTDYGETYK YSFWRLEYQLTQSKFAPEATFDNEWDSLSSTNFSKRHGEGRSTSFRQYSLDCPEMDDS FYDFDDPELCRARSSPTYGDDDQQEVDYEIEKSAPKRVEMNMHKRRSVKTNASQKGVE GGGEDPVPKKLPVELKQSASESPSPRRFMRSRSFLSKQIARSKKAQDVEKGDISKGER DGDVIIVTEEEILKTRKNMIIRRTVESGFRFFKDRGLQCFNYRLANLVFSESSLSLPN VMSVWSRNHHRMAVLGSIYGALQNFKPEFLKKDNGTVIEFESVYVEPTQEESPFNEES QEEIIIESDISSSFSPPHGELDTEKEASPEAPDHSFMVPRCESPIEEFDYFVKEERQF FSYAAEYAKYRRSPPRYKSQNQFQHIYGQRFY" assembly_gap 691048..691398 /estimated_length=351 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(692401..692544,692780..692980,693027..693119) /gene="Cbr-pcbd-1" /locus_tag="CBG_03930" /standard_name="CBG03930" /product="Protein CBR-PCBD-1" /note="C. briggsae CBR-PCBD-1 protein; contains similarity to Pfam domain PF01329 Pterin 4 alpha carbinolamine dehydratase contains similarity to Interpro domain IPR001533 (Transcriptional coactivator/pterin dehydratase)" /note="Predicted" /db_xref="GOA:A8WVS5" /db_xref="InterPro:IPR001533" /db_xref="InterPro:IPR036428" /db_xref="UniProtKB/TrEMBL:A8WVS5" /protein_id="CAP24738.1" /translation="MRTSFSLLLHRLQTSVRFLSTSSLSSSLPSTSHRLFSSTIAVSA RKKMPLLTESERTEQLSGLKSAGWKLVEGRDAIQKTFMFKDFNEAFGFMTRVGLKAEK MDHHPEWFNVYNKVDITLSTHDCGGLSPNDVKLARFIESIAKN" CDS complement(join(693281..693338,693391..693504, 693549..693779,693820..693922,693963..694039, 694342..694464,694508..694725)) /gene="CBG03931" /locus_tag="CBG_03931" /standard_name="CBG03931" /product="Protein CBG03931" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVS6" /protein_id="CAP24739.2" /translation="MTSTELINNYDIHLERYCNIYIRRKSGVPGDPTIFDEIDQLRFC QSVNQITDNYYNPSCPKRWDIECPKLQKALSCSLSRLINQHDLKNPFYSWGFKTKGSS FEPREPLKHIPQVGSVVTTTSSGYGTNKSSSSSQPRFDIVTEFQENCSIVGPKVNNRQ EAATALKTKHELMGPECYRQQQKPKWNWHNQNKQDKNRRMEHPTSSYLSCAKMPVTHR PAAASRVPFAQQQSVGNSKNQNSLHSSTHHPKKYFTNTSEPRKQVSSHKKPSEPKLVK PKPSIKYNEFIAKPKPKFSFDPVTNVLQKNF" CDS join(695473..695500,695548..695674,695723..696033, 696080..696204,696278..696442) /gene="CBG03932" /locus_tag="CBG_03932" /standard_name="CBG03932" /product="Protein CBG03932" /note="Predicted" /db_xref="GOA:A8WVS7" /db_xref="UniProtKB/TrEMBL:A8WVS7" /protein_id="CAP24740.1" /translation="MTINPVECLPQEYEEAPLTPRNDGKVQFLGPETVRYISPPRIEV VRQRVRPIAPQPPQTAAYSSISPPPSYQSSLYPTAIPPQPQVVPISMPMMSPQYMMPQ MAPMITHQPQMMCMPTIQQPVIAAPVAQMAQMLAPVQLSPPQFVQAPQQQTSPAVTLC INQSPQVGGISGGNGNALVCPKCRKGIITRQQDKLRKKILMCLAFCCCPLTCGIPLFW ICCNYVDTCGACGKSYGHRGKKNYKKKVNAVTM" CDS join(697162..697225,697271..697380,697426..697524, 697572..697827,697885..697981,698115..698283) /gene="CBG03933" /locus_tag="CBG_03933" /standard_name="CBG03933" /product="Protein CBG03933" /note="Predicted" /db_xref="GOA:A8WVS8" /db_xref="UniProtKB/TrEMBL:A8WVS8" /protein_id="CAP24741.1" /translation="MRSIRRDGSGSRHNRHSLQSEATTCIISDWEYDEDRTRESFDPN HYRYLCCCGHAHSLTGMKIVAGMLCVTVVFELWHLIVSILASEMVEKADVTGAAIRFL AGVFIAGSVLWAILAQRAELLVPYLLLQGAGLAIGLVFFVSFMYIGLFGDKKVGTTVL GSYGIPVNPRDQTAYFNYAAWLMAGSFAIVIVLQIWMMMIVVACWRFFRDKRNNEKNY KEIVTVQKIQLLTRMRISLSAEALGSEVCHPKDWAKTRSFSASLDV" CDS join(698921..699040,699083..699211,699343..699496, 699538..699860,699908..700055,700104..700477, 700522..700662) /gene="CBG03934" /locus_tag="CBG_03934" /standard_name="CBG03934" /product="Protein CBG03934" /note="contains similarity to Pfam domain PF03969 AFG1-like ATPase contains similarity to Interpro domain IPR005654 (ATPase, AFG1-like)" /note="Predicted" /db_xref="GOA:A8WVS9" /db_xref="InterPro:IPR005654" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8WVS9" /protein_id="CAP24742.2" /translation="MLSPLRRRTQTHQIQRFLVTLSDVYSKKVNEGALKEDDYQRKMI VDFDRLRKEIETYQPSNVSKSSEKSSTGFWKMFQKSKTEDASTTNSPRGIYLYGSVGC GKTMLMDLFFENCPITKKRRVHFNDFMQNVHKRMHELKMQSNEARGKFDPVPVIVDEI METTNLLCFDEFRFVSLKTILPHVNWIFQVTDIADAMILKRFFSMLFERGLVMVATSN RAPSELYKNGLQRHQFVPFITILEDKCASLALDSGMDYRRSASGDGNPIYFHGDDANN QCDIVFKQSAANETDNVRSKTLEILGRRVVVEKCCGGVADIDFKELCMTAKGAADYLV YARVFHTVIVRNVPVMNQDMWNAMRRFITMIDTFYDQKVRVVIGAAAPLDELFQFESH NVSHDALSDSKRILMDDLGIKSDHEGMSANVFSGDEEAFAYSRTVSRLYEMQTEKYRR HRRPYNSIESSI" CDS join(708631..708962,709686..709750,709804..709928, 709995..710260,711102..711206,711254..711340, 711389..711565,712480..712706,712792..713040, 713085..713262,713312..713483) /gene="CBG03935" /locus_tag="CBG_03935" /standard_name="CBG03935" /product="Protein CBG03935" /note="contains similarity to Pfam domain PF11977 Zc3h12a-like Ribonuclease NYN domain contains similarity to Interpro domains IPR019794 (Peroxidase, active site), IPR021869 (Ribonuclease Zc3h12a-like)" /note="Predicted" /db_xref="GOA:A8WVT0" /db_xref="InterPro:IPR000571" /db_xref="InterPro:IPR021869" /db_xref="InterPro:IPR040546" /db_xref="InterPro:IPR040757" /db_xref="UniProtKB/TrEMBL:A8WVT0" /protein_id="CAP24743.1" /translation="MDSLPRGHAPLCRTTGGGGNISNQRGLGTRLNPYYQSTPHQPTV QSMSQPIQSNGYNNHSQQQQKMMNYGNGGAASAGGANMSGQVLLEGPPPGLVAVQSSS ALDFDSCYSSCDDISHPSLSRESSDPSKIDDDQKTLMIRYPAPEVVEFATKLGYSTEQ LSHVLNTIGVDSRMDDVLSELVKMGLPSGNVRSSDGVMAISQPSSSSTSANHRPVAPS SSAPPMSSAIAISSASCSWAPYYPQYTPNMNLRSVVVDGSNIAMLHGRKEVFSCAGLR ECLHYFLERGHPEVLIFIPQYRREQPRSDSPITDQHILLEIERHIIYTPSRNVNGRRV VCHDDRYILRTAELKDAVIVSNDEYRDLTRENPAWKKIVEERLLMFTFVEDKFMPPDD PSGRNGPRIESFLSKVPVSSPNPLVCPYARKCTYGNKCKFYHPERANGQHMSVTERLM KENQQKKSLGAVKSMQYEMFKNKHAALSRTQSLNVVKPLTENICQLPPTPESPIQMPR QHMQLQQANSAPWQQHSVVQRHGSSPLTPVNRQMNNAHPEMYNQQHHHKVLPHQHGVI GSQRPSKMATAVSQTHLFAPSTAVWGHSELSVGPVNTGSDANESLSEVRARVHFHLCH IFPHDFVESVMAANPEEVNAPVLCELIIRAQKDYRK" CDS complement(join(715055..715339,715460..715855, 716050..716171,716712..717278,717960..718037, 718818..718824)) /gene="CBG03936" /locus_tag="CBG_03936" /standard_name="CBG03936" /product="Protein CBG03936" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVT1" /protein_id="CAP24744.2" /translation="MKVLKLLFLGSLCRLSASSSTPSNATSEDSVFLRIDTSLDAHSR LEAALNTLAELINPTKPNSELGKYFLLDDSIISELTNVDGTHADRIVKELTDLKYNLT AFNEKSKQFKMFEKLHQLINTTVIPGKSEKDEVEAIIGGWDKFDVLEFNLLKFHGSNL KNLEHSKDGAIAESRVRGAAARRFQQFWRRSRREYHGWTSTSYGDFRRFRNFDFQPEA AINGAKVIKTLEGAIVYEIRNKTTGEYKVDKGKFDKVMDERFNGPNCAFSNAHVFKFV DSHPKSSPDFTDFAHVCSKLAASVKTGTSKVEGLKTKLSSLKEGPYTKYVMEFSEYNV TQKFQSASILFKLFDRVIQASAGFDTFFKQGDLMNIEFQNLRYDDPNRRGWVEKMKIL ESVKSKFFDMKNQILKGREFYTPVSIENLMSLRWLVENLADISNPALQISQWSDFVLE IKNSSINLTAVDGFVASLNPIFDLNLLMQIIKHF" CDS join(722038..722115,722161..722268,722318..722419, 722493..722621,723838..723915,724346..724477, 724522..724932,724997..725065) /gene="Cbr-idhg-2" /locus_tag="CBG_03937" /standard_name="CBG03937" /product="Protein CBR-IDHG-2" /note="C. briggsae CBR-IDHG-2 protein; contains similarity to Pfam domain PF00180 Isocitrate/isopropylmalate dehydrogenase contains similarity to Interpro domains IPR004434 (Isocitrate dehydrogenase NAD-dependent), IPR001804 (Isocitrate/isopropylmalate dehydrogenase), IPR019818 (Isocitrate/isopropylmalate dehydrogenase, conserved site), IPR024084 (Isopropylmalate dehydrogenase-like domain)" /note="Predicted" /db_xref="GOA:A8WVT2" /db_xref="InterPro:IPR004434" /db_xref="InterPro:IPR019818" /db_xref="InterPro:IPR024084" /db_xref="UniProtKB/TrEMBL:A8WVT2" /protein_id="CAP24745.2" /translation="MFSKLPFQAIRGTASAIRTHQIPGHRLPLAKYGGRHTVCALPGD GIGPEMIAHIKNIFSFCHAPINFEEVQVSSSLLDGDMDAALLAIERNGVAIKGNIETK HDDPQFHSRNVELRTKLDLYANILHCVTIPTVPSRHAGIDIVLIRENTEGEYSGLEHE TVPGIIVTREKIERISRMAFEYAKANGRKKVTAVHKANIQKLGDGLFLKVVRDMSEEY KDIKFEAMIVDNASMQLVSKPQQFDVMVMPNLYGNIISNIACGLVGGPGLVSGMNLGD KYAVFETGTRNTGTSLAGKDIANPTAFIRASVDMLRYLGCHYHANIISDALWKALVEQ KIHTKDIGGSNSASDVVNATLINIEKLMEENPKK" assembly_gap 735204..739704 /estimated_length=4501 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(743149..743343,743399..743525,744624..744735, 744779..744938,744986..745115,745169..745284, 745337..745589,746309..746409) /gene="Cbr-nmur-4" /locus_tag="CBG_03939" /standard_name="CBG03939" /product="Protein CBR-NMUR-4" /note="C. briggsae CBR-NMUR-4 protein; contains similarity to Pfam domains PF00001 (7 transmembrane receptor (rhodopsin family)) , PF10328 (Serpentine type 7TM GPCR chemoreceptor Srx) , PF10320 (Serpentine type 7TM GPCR chemoreceptor Srsx) contains similarity to Interpro domains IPR019424 (7TM GPCR, serpentine receptor class sx (Srsx)), IPR009144 (Thyrotropin-releasing hormone receptor), IPR019430 (7TM GPCR, serpentine receptor class x (Srx)), IPR000276 (GPCR, rhodopsin-like, 7TM)" /note="Predicted" /db_xref="GOA:A8WVT3" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR002120" /db_xref="InterPro:IPR017452" /db_xref="UniProtKB/TrEMBL:A8WVT3" /protein_id="CAP24746.1" /translation="MTSASLAGISISPIMPTEHLLEGTMAPVGNQPLDITLAFIFSTI SVIGVLGNLLVITVVLKVRGMKTPTNCYLVSLAASDTLFFFASLPHEMMYLLFPSDNY LFGKLGCVLLTYLPYLAMNTSSLSILAFTIERYYGICNPYKARTMCTVKRATFIIAGI WAFSMIYHSYWLFLATLIKDDIGTSCSFRLERNSNAYKIVFLLDFVLWYVLPILCDII IYAKIGITLSQCGDKIKKSVKPKISNEVIIEKSKTSSTSMGHYSGRDSHISGKRNSTR GKNQVVKMLAIVVAVFAICWLPYRGMVVYNSFVSDPKYSWSPDWYINLSKTLVFINCA INPILYNLMSARFRAAFKSLLSKRKNSGFKTTALSHRHRLNTMDIMSSAEPKSPLITS MTGTP" CDS complement(join(746890..747023,747381..747634, 747687..747757,748106..748213,748624..748722, 748776..748856,750184..750291,750524..750605, 751861..752015,755080..755142)) /gene="CBG03940" /locus_tag="CBG_03940" /standard_name="CBG03940" /product="Protein CBG03940" /note="Predicted" /db_xref="GOA:A8WVT4" /db_xref="UniProtKB/TrEMBL:A8WVT4" /protein_id="CAP24747.2" /translation="MKSSSAVASILCLLLFVFIEQVNSTVFEEETEQCKSESGYGRKT FVCDVHGRLAATTKKKLTDILAGLKDRIGCECADGCLRADGTDAFIGLLHVTSSKNTD DLKRDMEKEYDDATLGNTTCDHGLVMVYLKDTQQLATFRGGDSFVLLGDDDMQKLHKL AAQQGSESDTLAVQYLLANYKQVSEAPIDNWYAGWLPVIGLIVAVLLVLCLVSILLSM ICAKCFCCCRKNKKEKYEVTKPATYKSIEPLYVITPPSTLNPRHHDAIYSTPYSGSPL PFPPPPGTTVPHTPNSTYRYRVDTNRKAPKDYENGSMGQLPIDEPRIGHPIYSPLPAL DPTYGTIPRARLAPNGAAPPLSPSYSSGNDPHFLDPRRKQETQTREELIY" CDS join(768444..768653,769522..769676,769730..769816, 771549..771720,779822..779994,781985..782105, 782156..782312,782358..782577,782628..783208, 783417..783568,783616..783774,783824..784448, 784823..784998) /gene="Cbr-rga-6" /locus_tag="CBG_03944" /standard_name="CBG03944" /product="Protein CBR-RGA-6" /note="C. briggsae CBR-RGA-6 protein; contains similarity to Pfam domain PF00620 RhoGAP domain contains similarity to Interpro domain IPR000198 (Rho GTPase-activating protein domain)" /note="Predicted" /db_xref="GOA:A8WVT5" /db_xref="InterPro:IPR000198" /db_xref="InterPro:IPR008936" /db_xref="InterPro:IPR037863" /db_xref="UniProtKB/TrEMBL:A8WVT5" /protein_id="CAP24748.2" /translation="MSTASRTPSPSSLSACGVSTSTATGNISSPRSKTSVASSTRSDS DVVVVPEHKPSSSFSIGRLLFRKGSSSSTSPVSDSVDSGKDDETGRSPVTSRPGSPNP GREKSPQMSTTRKLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKNKNQLQLPRLTLRH PSIDSSAMPLQLDVDENPMGESGGGGARDDFLQIRRSTQRRWTDSDTQGRLRDSRDSS DFNDSHDTLDVAGTSTHGVADSSSSSHHHHNYSMTAPVSPNVPLSASSSHSEGWKYSS QKLLWKLKPKYAYSHASSTSSSTDSAWKSLDSMTWRSVDGAEVILRGARLENLSEIER SALQLLAAQRLTKMLPGLNLGKPKDPLSALRQKRQKLVKSNRTPTVADVQRRASGTPM PEEKRVFGVSLAMCMMNEKRLDQESRCRSLDDSTVILLNKSKAKPTKSEPEMVGQTMP EDRKWLYPSTQNLYPTSTSNPSSPSPLIGSAPPTCSILPSANLLSAEPVEPQQVTGRF LKKQRPASASFSCSLDANIDDVDPHALQVPKIVENCTQYLMTYGLTQVGLFRVAGNTK RCRQLRNALEKVGGGAVINDNMVENTTSHDVATLLKEYFRDLPQSLLPAEHYSAYIGA AKFNIDERIEAIRLLFALLVSPNLDTLFVLLKFLHEVSCNSQDKHNAAGDLVLPGNKM DARNLATIFAPSILRVDHDKLQETLAENESQVTIVETMISNVEEIFKIPKELQCKIYT KLRETEPDRLDKILNHLSKMDSHESHPGALLSPFPATLEEDSPRHHRHCDHSHIGRQS PLARELTTNGKVKVQSQRSGSWPFSLTKTQTSPSRPEAQHFFPDDSQDGQGPSQECTS TSALGTKSASTTPAPGRKAEFNLKAADDSGRDSEFCSDEITFGTVSQPETSRDRVDTL SAACNSGPSSNSSKKTPMMASLQGATTSKSVDARSPSRERVDIRTAARSSAAAARRRL RNVVRAFRFTSMTRSTPDIAQSS" CDS complement(join(785317..785564,785620..785914, 785957..786075,786121..786225,786379..786463, 786511..786630)) /gene="CBG03945" /locus_tag="CBG_03945" /standard_name="CBG03945" /product="Protein CBG03945" /note="contains similarity to Pfam domains PF00294 (pfkB family carbohydrate kinase) , PF08543 (Phosphomethylpyrimidine kinase) contains similarity to Interpro domains IPR011611 (Carbohydrate/purine kinase), IPR004625 (Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase), IPR013749 (Phosphomethylpyrimidine kinase type-1)" /note="Predicted" /db_xref="GOA:A8WVT6" /db_xref="InterPro:IPR004625" /db_xref="InterPro:IPR011611" /db_xref="InterPro:IPR029056" /db_xref="UniProtKB/TrEMBL:A8WVT6" /protein_id="CAP24749.1" /translation="MSNTQVIAELERERDRHVLSIQSHVVHGYAGNKASVFPLQLHGF DVDFINSVQYSNHAGNIEYLTLPTRYPTVKGQKLTEKELEELYEGLVLNNVNHYTHIL TGYCGNVEFLKKIADIVKDLKKKDPTTKYVCDPVMGDNGRYYTPKELKPVYLDLIIPL ADVLTPNAFELGELTDTQIETEEDCLRAVKILHDKGVKTVVVTSGVTGAQTDECLRCY ASVAGSEIYRFTFPRLRGQFVGTGDVFASLLVVWLDETNGNVAESVKKVLGSMQKLIQ RTSDFAQQQVDQNSRAMCELRLVQSRKDLVLPPTCEQVKVEKIENTN" CDS complement(join(787913..788095,788149..788349, 788579..788633,791416..791579)) /gene="Cbr-clec-90" /locus_tag="CBG_03946" /standard_name="CBG03946" /product="Protein CBR-CLEC-90" /note="C. briggsae CBR-CLEC-90 protein ;" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVT7" /protein_id="CAP24750.2" /translation="MIIKNEMKLNILLYLQVSRAHAYIPILKQISKDMIEICERTQAL KKRTRQLESTELSRDFCCKATPIMCQSHQVCLRALVYSPYGNFFLSGCHPEEDHLSGC DFHSLPHNSSVHRCVCKDGECQNDFPGDCPIKGITDTTKPVITTTLSPTSTPPCLIAR NRTKTNSARNRHHHNHSMTSSSAVSSTILLSIWVIAVTTI" CDS complement(join(793556..793717,793766..793856, 793905..794235,794340..794751,794798..795166, 795218..795331)) /gene="CBG03948" /locus_tag="CBG_03948" /standard_name="CBG03948" /product="Protein CBG03948" /note="contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:A8WVT9" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR036236" /db_xref="UniProtKB/TrEMBL:A8WVT9" /protein_id="CAP24752.1" /translation="MISPSDSRLLYESQFSIFNGRLCSLRILLIPQSETISKIRVTSP SDASILLENTIAEQSDVETFVDVLKMITNVRSQDPTILGPRVEPSLGEPEFPYRLVID PISPSTDVITLPLCQASPQARCDYVLQLYAREKAQHQIQIEKSDELSKQLHNAIVDYN SMKTRCEFQEKEIALLRQLAESNSNKNKRARDDSENTPSKKRRCGCGDEESCDSDCDG EINEDEEDDMEADAELFRAATSQLQLSGRGSHNGMKLGCVDILIAFSFSVEVSSGEGG SNDNDQMNLMKQLEKLSSVIVKAPNLPSTSSMSTMHIKMENNQEQSGPIVLQSQGTSE DQNGVKKVVGVVQYVICQLCPEEEQKSMDPANQQQMQEHFLDKHVDKEKKKCEACPTD QFQPHNIGQHYRFHTNSVYACQHCGKRGRRNYLMSHVRTHTGERPYRCDTCSKSFSDA STLRRHRLVHTGEKKYQCPVCGRAIARKDNVKVHIRSHGIHA" CDS complement(join(796122..796206,796253..796393, 796436..796633,796682..796820,796867..796985, 797036..797240,797286..797465,797522..797675)) /gene="CBG03949" /locus_tag="CBG_03949" /standard_name="CBG03949" /product="Protein CBG03949" /note="contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domain IPR000276 (GPCR, rhodopsin-like, 7TM)" /note="Predicted" /db_xref="GOA:A8WVU0" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR017452" /db_xref="UniProtKB/TrEMBL:A8WVU0" /protein_id="CAP24753.2" /translation="MNSTHDHLNNETKALATTEATISEEMMREWFQSQMGKGTGGGKI QAIVPLEEDMEWATVGGRFGMAYIAFGILAILVNIVIFVCICLRRRTTSSHVFYIIIL NFCIIDTIKGICSVLFALKLLTFNMATDASMWTVRVDQYSGVLLRFTNLTTIMNVLLI TMNEFIFICYPLRYSCIVTRFRVLCAIVFSWLIALMLTILNMLTSTRQRSVMIDTDCE NESLINASFCIKHQETSLFHYFVFHMVLIAFCLICLAITASCYFILFRIITKLVRADV KYQVETDLLREEHSHGKSIARRKKYVLMIGSVILVYTVYLTTYAVIQGMHLVNITSRS KGTPVHARSGYIYTKYTCYLFISFHSLLQPLCFARMREFRNILKRTLFPCLTKTDPIL TTDVYKRNSQPTDI" CDS complement(join(805106..805177,805285..805379, 805420..805507,805557..805774,805824..805929, 805978..806180,806227..806473,806525..806593, 806645..806728)) /gene="CBG03950" /locus_tag="CBG_03950" /standard_name="CBG03950" /product="Protein CBG03950" /note="contains similarity to Pfam domain PF01066 CDP-alcohol phosphatidyltransferase contains similarity to Interpro domains IPR014472 (Choline/ethanolamine phosphotransferase), IPR001917 (Aminotransferase, class-II, pyridoxal-phosphate binding site), IPR000462 (CDP-alcohol phosphatidyltransferase)" /note="Predicted" /db_xref="GOA:A8WVU1" /db_xref="InterPro:IPR000462" /db_xref="InterPro:IPR014472" /db_xref="UniProtKB/TrEMBL:A8WVU1" /protein_id="CAP24754.2" /translation="MGYVKQEKHPLEYEYLQPEHLKGFDSYKYNCVDNSPLSVYVSHP FWNWLVEFYPRTWVPNVLTLVGWGFVMAGFFIEGYLDYRIDRNSDGSLNPIPDWFWFA AALCTFLGHTLDGTDGKQSRRIGASGPTGELFDHGLDSWSTVPFTITIFSIFGRGRFS ISSVELLCVLISTQIVFFTTHWEKYNTGIMFLSWAYDVSQFGLVIVYLWTYVVGYKWF HFDLFGVNFALTFEIGFYLCCLMSLIASAYNVNKAEKLKQPTLLAGVRPAWPVLVLFA SSIFWAVKSPTNVIDADPRFFFFCMGTVFSNITCRLIIAQMASTVCDIYNLTLGIYLA TIGKSLAFYSPAHELLILRLSTLVITALHLHYGICVVRQLCRHFKIYAFDVSYLQNRS K" CDS complement(join(808468..808597,808656..808998, 810493..810622,810668..810943,811839..811974, 812345..812478)) /gene="Cbr-gnrr-1" /locus_tag="CBG_03951" /standard_name="CBG03951" /product="Protein CBR-GNRR-1" /note="C. briggsae CBR-GNRR-1 protein; contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR000276 (GPCR, rhodopsin-like, 7TM), IPR001817 (Vasopressin receptor)" /note="Predicted" /db_xref="GOA:A8WVU2" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR001817" /db_xref="InterPro:IPR017452" /db_xref="UniProtKB/TrEMBL:A8WVU2" /protein_id="CAP24755.2" /translation="MINCSRSQPPDIAIKSSVISIVLTYLALFILAFIGNVTMFMILC RNQLVKVRRVHSLLLHMNIAHLLVTLVVMPKEILHNYMVAWFAGDIMCRVCKFFDVFG ISLSMNVLICITLDRFYSIFFPLYAMRARKSVQRMVSIAWIVSLITSAPQLYLFKTAE HPCFAWYTQCVSLNFIGELSNDVVFYFSIINIIQVYIAPLIVTVICYSLILWKISRKT KLVGEKESEKSSELLLRRNGQNNLEKARSRTLKMTFVIVLAFISCWTPYSILMFLHFL RRTDWIPKDIRKFIYAFAVLNSAISPYLYGYFSFDIRKELQLLFACSRATAADRHLSC SANISRNVHSSSEIKSVRECANGAHRPVILTEKQLTTHYRHGQPVDTV" assembly_gap 809523..809723 /estimated_length=201 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(819845..819866,819926..820070,820118..820190, 820233..820368,821147..821316) /gene="Cbr-zig-7" /locus_tag="CBG_03952" /standard_name="CBG03952" /product="Protein CBR-ZIG-7" /note="C. briggsae CBR-ZIG-7 protein ;" /note="Predicted" /db_xref="GOA:A8WVU3" /db_xref="UniProtKB/TrEMBL:A8WVU3" /protein_id="CAP24756.2" /translation="MSNLLLILLCSILPVLLTAEMVIPINVIGNLAVIATPESHIGNP NKTLYADIPNLWCGAQKLGEHLDVEYGEFTRLSDGKVFPGTLNQGKVYLEIGKANVRV TGRYRCEVRTLDKQIHSGNLIIYCNSENIEYDGNNLILKELAEEHAGKYRCTGDNSFP LFVDGPSIPHQLYFDQDIKVV" assembly_gap 820590..820871 /estimated_length=282 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(828561..829374,829425..829732,829900..830365, 830411..830661) /gene="CBG03954" /locus_tag="CBG_03954" /standard_name="CBG03954" /product="Protein CBG03954" /note="contains similarity to Pfam domain PF08397 IRSp53/MIM homology domain contains similarity to Interpro domain IPR013606 (IRSp53/MIM homology domain (IMD))" /note="Predicted" /db_xref="GOA:A8WVU4" /db_xref="InterPro:IPR013606" /db_xref="InterPro:IPR027267" /db_xref="InterPro:IPR030127" /db_xref="UniProtKB/TrEMBL:A8WVU4" /protein_id="CAP24757.2" /translation="MDPDAEFNLLTTLYQSVVHDMKHTYPGWDALGQKAQKLGTQLRA TAQCLSSFTEAMQLVCDNANNLKGSLTHSSFFQTKKNSSGASRDVGACVTRVCIKQRA IENRMRSWADALCEELAISLQQRGNYWKGRCSDMDKMASKHVKKVRARKQRPDVTAMS DKREICTKVLTEQRTQFSFFIQTLMPVLNAQMNMLDEGAHLRQVVENLDSTVKHVDTE QLVSSIVSDIAQGPDSAWKQCLAQAGKKWMSSEDGYSYMGSIRDLSTRATTPARTTRS ISTSCTRNLPLLTNTVLDSSASSVVSSSTRYSKPPLQRRNSEKSIGHYSMSSPNTDGS STYLNLMGNGAANSSSNTITEMSQYQQNGHHQPVMRTNSANTNTSIGTTPTVYHPATP ATSSSCGQPEMSSGSSGTSTSAFLISEACRDIDQLGHLSDLENYGATQDSTRYFLHDV PSHNTQKNGTNASSTAHVAAMIQRRASQAGEYAGHQTNTDLGKRASVSTLGSSSISNY GSVGHPPPPNQAPNQPVRMRTTSASRPPPPARRSSQITAATPTAPSVAEQRMNGSMGS RQSLDSAGLYESEMPHPQHFYQMSSFNRPTPASVTASAAAAAKFRI" CDS join(831227..831285,831512..831653,831787..831895, 831942..832071,832120..832201) /gene="CBG03955" /locus_tag="CBG_03955" /standard_name="CBG03955" /product="Protein CBG03955" /note="contains similarity to Pfam domain PF00036 EF hand contains similarity to Interpro domains IPR002048 (Calcium-binding EF-hand), IPR018248 (EF-hand), IPR018247 (EF-Hand 1, calcium-binding site)" /note="Predicted" /db_xref="GOA:A8WVU5" /db_xref="InterPro:IPR002048" /db_xref="InterPro:IPR011992" /db_xref="InterPro:IPR018247" /db_xref="UniProtKB/TrEMBL:A8WVU5" /protein_id="CAP24758.1" /translation="MTAFQQPNLQQIFSSVDKDRSGQISADELQRALSNGTWNPFNPE TCRLMIGMFDSNGDGAINFQEFQALWRYINDWTNCFRGFDTDGSGNIDKTELTNALTQ FGYRLSPQFYNILMHKFDRSHSNRINFDDFIQLCVVLQTLTAAFRDVDSDRDGVITVG YEQFLTMVFSLKM" CDS complement(join(832511..832965,833013..833334, 833381..833464)) /gene="Cbr-rpa-2" /locus_tag="CBG_03956" /standard_name="CBG03956" /product="Protein CBR-RPA-2" /note="C. briggsae CBR-RPA-2 protein; contains similarity to Pfam domain PF08784 Replication protein A C terminal contains similarity to Interpro domains IPR014646 (Replication protein A, subunit RPA32), IPR014892 (Replication protein A, C-terminal)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WVU6" /db_xref="InterPro:IPR012340" /db_xref="InterPro:IPR014646" /db_xref="InterPro:IPR014892" /db_xref="InterPro:IPR036388" /db_xref="InterPro:IPR036390" /db_xref="InterPro:IPR040260" /db_xref="UniProtKB/TrEMBL:A8WVU6" /protein_id="CAP24759.1" /translation="MWNETADHEHGAGGWAGGESSFMTDRKPDSKAATLGDRLPVPVT ISNLNEHFSATDDKYIIGNFRFATVQTVGIVKEINQEGTTWSYDLCDPNNEAMEYRAL KYENEGSNSDQSSIVEGTRVRAIGKLKSFDGSNSIMLFNITPVTDDKDFTIFELEAEA ARLFFQKNMNDKLKSDASSRGFQGMLAPPKSRAGQQPMQQSSQGSDKKERLYPAQSQV NVEGDLRQRVTAVLKGVSEEAHEEGSNILWIAEQLQEKDIKKLRDCLSGMVENGLAYT TTDEETFSVI" CDS join(834029..834293,834338..835419,835475..835693, 835750..836007,836053..836289) /gene="Cbr-cpg-1" /locus_tag="CBG_03957" /standard_name="CBG03957" /product="Protein CBR-CPG-1" /note="C. briggsae CBR-CPG-1 protein; contains similarity to Pfam domain PF01607 Chitin binding Peritrophin-A domain contains similarity to Interpro domain IPR002557 (Chitin binding domain)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WVU7" /db_xref="InterPro:IPR002557" /db_xref="InterPro:IPR036508" /db_xref="UniProtKB/Swiss-Prot:A8WVU7" /protein_id="CAP24760.1" /translation="MLPKSVLIVAFLVASSSAQYGVTGMYENLPLESTTVEASGEGSG YNESNDDGFVTGADAVAIDTDCSTKEDGLYAIGGCSPQFLTCSGGIARIMDCPANLIY DQRIIACEYSYNVPECSGVPQDVSSTQAYYPATEETTPAENVTVPAETTVDPYAPVEV ATTAAPSEDVPVETTASPYAPVEVETTTAPAEDVTVPEETTVAPYAPVEVYTTAAPAN DEPVTRTLLDKTCNGKADGFYSFGQCSDHYIACSNGYTIPMQCPARLSFDEARVICDY TMNVPECQNGSGNYEGSAEETTTEASGELPYSNGYGYEETTTAAADVPSTEGYAPETT AEAWVAPYRLESTTAADVPTTTVGYAPEVIEETTTSEYVEETTTAADVSTTTTVEYVP EVTETTTAPYVEETTTAEYVEETTTAADVPTTTTVAYAPEVTETTTVPYIEETTTVEE ATTAADVPTTTGYVPEVIETTTTPYVEETTTAEYVEETSTAADVPTTTTVAYAPEVTE TTTVPYIEETTTVEEATTAADVPTTTGYVPEVIETTTTPYVEETTTVEETTTTTVAYA PEVVETTTTPYVEESTTTPYVEETTTALMFHPPQSKATKLPQIHHPASKEHLLSSHAH KTIETVSMDMNLSSSASRDSSSLQSKDDAQLLTKLRSATNRTSTKEATTRTQNMHAHY HRNH" CDS complement(join(837003..837434,837479..838465, 838511..839387,839435..839555,839600..839744, 839789..839932)) /gene="CBG03958" /locus_tag="CBG_03958" /standard_name="CBG03958" /product="Protein CBG03958" /note="contains similarity to Pfam domain PF00626 Gelsolin repeat contains similarity to Interpro domains IPR007122 (Gelsolin), IPR003128 (Villin headpiece), IPR007123 (Gelsolin domain)" /note="Predicted" /db_xref="GOA:A8WVU8" /db_xref="InterPro:IPR003128" /db_xref="InterPro:IPR007122" /db_xref="InterPro:IPR007123" /db_xref="InterPro:IPR029006" /db_xref="InterPro:IPR036886" /db_xref="UniProtKB/TrEMBL:A8WVU8" /protein_id="CAP24761.1" /translation="MSIIPFSDHLMIAQLQKSLQQSSTYEKKNVEVALAERSLKERLA SLNNSADQWKSRPVRHTPPPLQRRTSANVLHDLPIFQRAQRNVRQSLPVLEKPCDITS GLKKFFGNNPTISTNSQSDANEIDLDVISSKATPVLKSVTRPRAPCRSKTTKSENLDD RTRLDAVKIDEEKFIEVEEEPEKLETQEQAIAAIQGAKQLLKSPTKVSPYPEVMLIQV RGSKHVDVRLVAPSISSIHEHACFVVVHQNHLIKYEGTMSNILEKTKASQLCIEILGK NDLHCTAKSITTVTENGKNSLSNLLFCSENSASKVSNHYQTTLEPFETTISKLNLVLR IADDCSAQTCARREKLSHSIMQPNEVLIFDFGSEIYIWTGKYSKKVSTAYAVEYAKQL MKKPVKNGKTLLGDSEFSDDDGRPEWTLFRKIHQGVLDTLFKAKFSDWPETHEVITTC KPKPLFSKKTPGIKTYEDVLATNQDEEVDNLVRRMLEEPELDPVLIIEDQEIDRKLHD IISEDRCLWILRGEELQKIEYTNHFDSRKCYVLQWQYRIQKSGVRRIKTGKEEERETG RSRVAFFYWLGEHTTPKQHGLCALRIKEIDRENSPRIRVTDGNEPALFLTLFEGKFMV SNDVADKDQLRRYVVVGANSQESSLRQIDDMDSKLRSHAAYIEKTSDGPHIVCGANCT PEQVHFVLAHADHLRQTAGIRGNSEVEVEGDKKTRNWVSSVGRKRSMRVWRIFENESE QVNHMSGHKDCAFTFPQQILTETILIDVGEALWLWSEDVVTTFALKVAEKYWKNRNGT ARVVYKGAEPESFSALFMKWENFEVENPMDSKDLSELLKERCRTFSLKELKERTQLPA GMDMRRLESYLTDDDFIKAFGIVRTEFYAQKAWKQNEARKRVGLF" CDS join(846360..846428,846591..846672,846794..846954, 847050..847764,847808..848207,848254..849460, 849474..849542,849584..850042,850087..850342, 850393..850559) /gene="Cbr-let-502" /locus_tag="CBG_03960" /standard_name="CBG03960" /product="Protein CBR-LET-502" /note="C. briggsae CBR-LET-502 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00433 (Protein kinase C terminal domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR017892 (Protein kinase, C-terminal), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR000961 (AGC-kinase, C-terminal), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol binding), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WVU9" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR000961" /db_xref="InterPro:IPR002219" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR011993" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR029875" /db_xref="UniProtKB/Swiss-Prot:A8WVU9" /protein_id="CAP24762.2" /translation="MEQDELLHQLVDPKSPINIESLLDTITALVNDCKIPVLMRMKSV DNFISRYERIVESVAALRMKATDFRQLKVIGRGAFGEVHLVRHTRTNTVYAMKMLNKD DMIKRADSAFFWEERDIMAHANSEWIVRLQYAFQDPRHLYMVMEYMPGGDLVNLMTSY EVSEKWTRFYTAEIVEALAALHNMGYIHRDVKPDNMLISRSGHIKLADFGTCVKMNSN GVVRCSTAVGTPDYISPEVLRNQGKDSEFGKEVDWWSVGVFIYEMLVGETPFYAEALV STYANIMNHQTSLRFPDEPLISTQAKDIIKKFLSAAPERLGKNNVDEIRNHKFFKNDE WTFETLKDATPPIVPSLKSDDDTTHFEEIETRDRDNASDFQLPKTFNGNQLPFIGFTY SNEYSPVKKLLNGASSNGVQNGVENKPVVVQQPLTNGHSTGIPEEQYEEVVIELDSKK RELESLKDSISRTEIRAKLIETEKNSLSSKINDLERELKDNKERLRLGADSDTKVNEL SVELRMSKEYNGEMENELSKFRDKCEQLKEDLRKKSGELAQEKNETQRVLQQKKNAEE AFAEIKRDHEMLQTREAEKSLQLKKALDERKENGAYQQSVAKATDAEWERKMQYYEKQ LEQATDDRKREEQKRTAAEFDQSRVARKLAGIEANYELLQNDYTNMKEARKDLERDLQ DVIAEKRRLEIRVEQLMDSRNTDERVLNLCQEELLESQEEAKYKEDGLRGKIDGIRNE LENEKMKSQTLEENLIVADKERGMLKMEVQELMQRHKWEMANKEQNLKHIENQLEELK EHSRIESTEQESNDKKTIADLNKKLELEKAHKKAVINKLEEEMAKRQPLKKGDKGITK SALIKKEREIVGFKKCRTGRILMSLQQENQHLQQKMTEMYMDSEKQGEHFSYQMQEMS QLIETLRDELKEYKDEYPQRHSVNRYEDKRSLDSREGIPTSISHQNIQIDGWLSLRDM TKKSRKPKVVFKKKSDHQLTLFFQWTNYFVILNEYAFTIYTDEKHLNSVVLTIEAGAM AHVRHVTSADLRNVDDNQLPKIFHIMYDDTSSNSSRHASNSDLSICEPREEGWKRHDF QELSYHTRTYCDDCGKKLSDFIRPTPAFECKNCHYKTHKEHIAQGTITMCRYTGLSRE LVLMGTHKEVCNQWVSQLRRFIEASRPANVSVSRVSSRRHVGGPGSSA" CDS join(851277..851279,851328..851465,851515..851658, 851708..852324,852375..852504) /gene="CBG03961" /locus_tag="CBG_03961" /standard_name="CBG03961" /product="Protein CBG03961" /note="contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR019775 (WD40 repeat, conserved site), IPR001680 (WD40 repeat), IPR020472 (G-protein beta WD-40 repeat)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WVV0" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR019775" /db_xref="InterPro:IPR020472" /db_xref="InterPro:IPR036322" /db_xref="InterPro:IPR037588" /db_xref="UniProtKB/TrEMBL:A8WVV0" /protein_id="CAP24763.2" /translation="MSTTDTPPPFDNSPNALLVSASYDLSIRLWQLASGKCIGTIPHN EGQVNALSLTSTGRDLAVGAWQRVRIYDVSSGKDPKATIELPRNVTVVGFEAAGRWMY TGGEDGVCRIWEMRNNQLVANRLLSFSGNGVTSIVPNTNQTDLFISTNSGHVWIWDVV NHMFMRLPMPDDLRMQEYVHRLAVHPSGKKLSGVTNQGRLLCWDLMTRQVEAHSFDMF KSPIVPIEQDTGTYGCLRDEDRQHRMQTGHGISCRYSPDGKWIVASGSEKDVYVYNSE TMDQVATLPTGCGWNWDAIFSSEGRYIFTGGDDNQVKIWDVINSKKVAQWDGHGKPIT AMCINGPTP" CDS complement(join(852776..853409,853636..854267, 854311..854403,854490..854570,854623..854958)) /gene="Cbr-ugt-25" /locus_tag="CBG_03962" /standard_name="CBG03962" /product="Protein CBR-UGT-25" /note="C. briggsae CBR-UGT-25 protein; contains similarity to Pfam domains PF04101 (Glycosyltransferase family 28 C-terminal domain) , PF00201 (UDP-glucoronosyl and UDP-glucosyl transferase) contains similarity to Interpro domains IPR002213 (UDP-glucuronosyl/UDP- glucosyltransferase), IPR007235 (Glycosyl transferase, family 28, C-terminal)" /note="Predicted" /db_xref="GOA:A8WVV1" /db_xref="InterPro:IPR002213" /db_xref="InterPro:IPR035595" /db_xref="UniProtKB/TrEMBL:A8WVV1" /protein_id="CAP24764.2" /translation="MVPPLHLYQYHLTYHISQIRKLRKLPCVCCIRDKKAESPFLVSS LNKTYKRKMMKRESSPSTAMIIQSLFFLSLIGLLNAYNILVYSPSFGGSHTNFMARLA DTLTDVGHNVTFLIPVADEARKGQLGVKKTKDVVIVEQDQIMKRQVKPIDDDMAQYWT TDMDSSNADTIFNVFFDAMVLSCENFMRNKEAFEDLKRRNFDVGIFEPVSVCGLGYMN ALRIEKIIMASSCALYDGALAAVGEPLDFSYVPGMMSKSGEKMSLSEKLENYRLSMAS YRMQHGMWDKETEIYRKHLGYGIPHWRDLMPTSSVFFTNSIPYVDFPRTVTQKTVPIG GISVDIESIRSQKLSIEWSTVLDERPFNMLISFGSMVRSMDMPTEWRRGLLEAIKSEP NVTFIWKYENDDLEWAKGIKNIYFSKWVPQTALLNDDRLTAFMTHGGLGSTNELAHLG KPALMIPVFADQDRNANMLARHGGVKVIHKSELGNTKVIKNAIRSILHDEEFKKHAEK LADLLVNQPLKPKEQVVKYTEFVARFGPFPEMDSFGRKLGFIERNLLDIYSVIGLSYI IAFLLIFFACRFVFGLLPLKFIKKD" CDS complement(856670..857014) /gene="CBG25242" /locus_tag="CBG_25242" /standard_name="CBG25242" /product="Protein CBG25242" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFL2" /protein_id="CAR98692.1" /translation="MSLNISNVQSSSRGEVSNSSPQSREKILDDARRAVDESCQMFEK AHEGVYGLHYELLAAYEQVEAFERKIDEGGNNSTLQKLQKQLRAAEIEVEKVQLRLDV AVIEKRELYKQM" CDS complement(join(858523..858712,858758..859048, 859267..859367,859630..859941,859988..860089, 860245..860328,860842..861069,861941..862252, 863073..863165,863210..863290,863336..863485)) /gene="CBG03964" /locus_tag="CBG_03964" /standard_name="CBG03964" /product="Protein CBG03964" /note="contains similarity to Pfam domains PF04101 (Glycosyltransferase family 28 C-terminal domain) , PF00201 (UDP-glucoronosyl and UDP-glucosyl transferase) (3)contains similarity to Interpro domains IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR007235 (Glycosyl transferase, family 28, C-terminal)" /note="Predicted" /db_xref="GOA:A8WVV2" /db_xref="InterPro:IPR002213" /db_xref="UniProtKB/TrEMBL:A8WVV2" /protein_id="CAP24765.2" /translation="MSTKLFLIFSFFFLSVNSVNVLVYSPAFAASHTNFMARLADTLT ESGHNVTFLVPIIDVARRNQLGVRLTTDVLVVEQDDKARQEHIPFDESMEAYWTEETD SSNVEDSIKWFFDGMKVGCENFLRDKNVFDLMKSRNFDVAILEPLSVCGLGFFEKLGI EKTILASSCANYDYLFRHLGEPNEYSYVPSLMSTKGEKMNFFERFENYKVSEIRTISG NGPIRTKAELLPTPSSGCLVDGNFGTSCTILGYILGDTFQIEKNGDRKEITCILFFCK LYCRRLIAISRLTYLMPVVDVEKRDECIGVKLTKDLIIVEAGAEMLAQKTSDTSSDEI MEVFWKAEMDSSNSRDMFKWFSSDMKIACRNFISRRDIFSQMKSRNFDLAILEPVSVC GLGFVKALGIEKIILASSCTFFDTVLPYIGEPLDFSYVPAGFSVTGDVMSISERYENW LVTKISSGWEQILNKRTSNVLISFGSMVKSTHMPLKWSHGGLGSTMELAYSGKPAVVI PVFADQIRNANMLARHKGAIYLHKNFMENIEIVRKAFENVLFDQSYKKNALKLADILN NQPYSPKENVIKYTEFVGEHGPFPSMDPYGRHPNYFQKTFLDIYAIFALFCLTIIIFT LVVARIIYATIRNCFQSKLIKRN" CDS complement(join(864103..864250,864304..864615, 864666..865008,865058..865164,865213..866975, 867026..867616,867667..867732)) /gene="CBG03965" /locus_tag="CBG_03965" /standard_name="CBG03965" /product="Protein CBG03965" /note="contains similarity to Pfam domains PF00271 (Helicase conserved C-terminal domain) , PF04851 (Type III restriction enzyme, res subunit) , PF00176 (SNF2 family N-terminal domain) contains similarity to Interpro domains IPR006935 (Helicase/UvrB domain), IPR000330 (SNF2-related), IPR014001 (DEAD-like helicase), IPR001650 (Helicase, C-terminal)" /note="Predicted" /db_xref="GOA:A8WVV3" /db_xref="InterPro:IPR000330" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8WVV3" /protein_id="CAP24766.2" /translation="MSSAYRRRVVLESSEESDAGEKSENDHSKSGSPEGGAEQNISEI SDIYKTPEESIIADSVLLNNSGVNAGMDIEECSPPISNHSGSFATSTPNSKSRASFKV DSSYASSKSSPQNHDHDRSLVENDENKPLTPISKKLIESNDPRSKAKLRERLLRKSLK SKNQSSENLEKSESVGKVGGWGSSLGEGSSESTDLFNSVLSPINKVSTSKLDFDAETF MNIPPIATSTQINHIDETENVMETIVDNQGNKSESLFGTPTRVKQDESDMETLLKLPP PLKNTEILANSDDSDIMIVSSPPSQQRQNPQFNIQFEQEDYTKLSFKDLLAKKNHVMG LISLAESLPDKGAAVLRKFNEIDDEIERRKDFGLDIREPSDDDDEDIIVLSDDEPTSS RQPSFPVGRVAPKPPPRRIDPLNVPKPDFNAMLDKNNKKLMAGKMTDEKYRRVQLISD RVVQQLAELVPFPNRLLIRFFYRATHTIPGETDLTETPKGFKIDLMPHQKAGLTWMLW RESQPQPGGILADDMGLGKTLSMISLIAHQKQARIARKDAGDDERDKEERKVVKEQGL TASNSTLIVAPASLIHQWEAEITRRLKDDALSVYMFHGTKKQRNIDARRLARYDVVIT TYTLLANELIEKIKTKSKADSSSDDDMDNSKSGIRRAVGKDDSVLAQICWARVILDEA HAIKNRLSLASKAVCRLSAFSRWCLSGTPIHNNLWDLYSLIRFLRVPPFSDDTYWKES IMPMKAIMADRVNLLTKNLLLRRTKEQTCAVTNKKLVELPQKIVKIHELELGGAEAQA YDIMMAAGKKFVKKLLENSDDMRNHGFVRRRKRNDEDDVQNPFNFGPRNLDSRSNFEK MSYVLLLLLRLRQACVHFHITKSAMDMDAFELIGGDEDSADIDDLSDMMDKTMRMLED DDEDDEQARVQNPSRIFEPDYLSCKMKATLEILNEATEKNEKVVVVSQWTSVLDLIKK HVKENGIRYTSITGQVLVKDRQERVDSFNQEKGGANVMLLSLTAGGVGLNLCGGNHLI MVDLHWNPALEQQAFDRIYRMGQKKPVFIHRLVTNNTIEQRVAELQKSKLQLASSILD GTATRKMNKLTTSDIKMLFDL" assembly_gap 868681..868851 /estimated_length=171 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(869487..869676,869964..870807, 870857..871100,871152..871244,871295..871375, 871422..871565)) /gene="CBG03966" /locus_tag="CBG_03966" /standard_name="CBG03966" /product="Protein CBG03966" /note="contains similarity to Pfam domains PF04101 (Glycosyltransferase family 28 C-terminal domain) , PF00201 (UDP-glucoronosyl and UDP-glucosyl transferase) contains similarity to Interpro domains IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR007235 (Glycosyl transferase, family 28, C-terminal)" /note="Predicted" /db_xref="GOA:A8WVV4" /db_xref="InterPro:IPR002213" /db_xref="InterPro:IPR035595" /db_xref="UniProtKB/TrEMBL:A8WVV4" /protein_id="CAP24767.1" /translation="MIRKLCFLLLIVQTLSFNVLVLSPAFGASHMNFMAHLADTLTEV GHNVTFLIPVADEARKDQLGVKITKDVVLVEQDEIMSRQSLVVDDHMDSMWTLDTHEP NFEEMFSWFHKLMELSCANFMRNTEVLSLMKTKNFDVAILEPLSVCGLGFFKKLGIEK TILASSCSLYDFLLPDIGEPEEHSYVPSLSSQTGDQMNLYERYKNYKFSKEWKTQMDK LFDQETAIYRKYLGKDIPDWRELLPSASLFFTNSNPYLDFPRPVIQKTIPIGGISVNM KKIKSQKLDSDWDEILNRRDHNMLVSFGSMVKSAQMPIEWKNNILKVIESEPNVTFIW KYETNDTEFAKGIDNVIFSKWVPQTALLNDDRLTAFLTHGGLGSTNELAHCGKPAVMV PIFGDQVRNANMLARHKGSIFVWKNDLADFDILKQAVHSILYDPKYKKNAMHLADILE NQPHQPKDLVVKHTEFLAQYGPFPKMDPVGRSLGFIARNFIDIYAAAIITYLTLGYSF YIVLRFLASKFPVRLVRKNKKDL" CDS complement(873199..873600) /gene="CBG25243" /locus_tag="CBG_25243" /standard_name="CBG25243" /product="Protein CBG25243" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFL3" /protein_id="CAR98693.1" /translation="MAQPVNFNESNEFCSRVVYIDLNRSTLRDDEGNISIIENPERGN IRAKLTKEMQKLGWYPGEASTSFIFYKRDDENSAEENVNEAIRRTNETYRYAHFQFAL LKPIRLSNVDDDVDGLKNLFSNFPADAENEN" tRNA complement(join(874938..874973,875102..875138)) /gene="CBG28300" /locus_tag="CBG_28300" /standard_name="CBG28300" /product="RNA transcript CBG28300" /note="C. briggsae predicted tRNA" CDS join(878060..879084,880222..880495) /gene="CBG03968" /locus_tag="CBG_03968" /standard_name="CBG03968" /product="Protein CBG03968" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVV5" /protein_id="CAP24768.2" /translation="MYTDFSGYEHLAEKELNHRSISVAECREWIANKKCEYGSLGKGK EGIYSTNNKVNEDYPNRFTSFFTSKRYYKENCVIMETKVYSHFNQSRPSNVLSDLSNC KYQDGYCQPGKMNEIIIWDVNKDQKCQYISIGKLDGIMNNGLRINSQNQIALSLNKSK IIRDCNLNLLISEEGFAVKEIQKLPTPQALTSTPSLQEMSINPQKFQKEIEENYKRQQ EQIQKDRELCEKLQTEKDKEVRDKYEADRKEFEKRREEKMKQYLEFEKRKKEKMERQG LLNTTTSVNSNTTNRIKKSTKRKQSFLEANQSLEDTSRPFPLPTYEEYSKIKNDCLLL RSYADYLRIKYFTMRFFNSDFKETSSSERSFIIITPKEKDKIQLVDNLDEEKIENNKK VSEGASITQKSLNTNRTEGLNKKNAAFLRALKRGSGFKRI" CDS 881203..881748 /gene="CBG25244" /locus_tag="CBG_25244" /standard_name="CBG25244" /product="Protein CBG25244" /note="contains similarity to Pfam domain PF04665 Poxvirus A32 protein contains similarity to Interpro domain IPR006758 (Uncharacterised protein family B354L)" /note="Predicted" /db_xref="InterPro:IPR006758" /db_xref="UniProtKB/TrEMBL:B6IFL4" /protein_id="CAR98694.1" /translation="MNEGLSKKEITKCFEKQDFIIEIPSRNPTSQGEEKDPRAQKIIE VHSSDKIEDIPDPSSLDVNKKTLIIFDDLLLEKQNKIEQYYTRGRHSSIDCFYISQNY IKLPKNTIRENANFFIIFPQDKMNLDYIYRDHCNEIKKEEFLEFTKEVWSTKYNFLTI DKSSPMEDGRFRKCLKYFYIF" CDS 882285..882869 /gene="CBG25245" /locus_tag="CBG_25245" /standard_name="CBG25245" /product="Protein CBG25245" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFL5" /protein_id="CAR98695.1" /translation="MNRTPNEIDQLKLSKFVTDIKKLDGTKDVDFSEILEYTQNEHTK EIAQNYLDALEKMITTIDSSKLSTSDKFNYKFAFTKHMTSECKSECKSIIINCLGISN KKKSMMIKEVDNAFQKERDEHNELRKKYNEKQKEQIVKVPSIDLALTIKNKKTLTNRE CLDFLNDLDIDDTLLADKFKLVFLKIFQMFQEHM" CDS 884083..884241 /gene="CBG25246" /locus_tag="CBG_25246" /standard_name="CBG25246" /product="Protein CBG25246" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFL6" /protein_id="CAR98696.1" /translation="MKRDEVRRKVAMIGSELRKYILKSKEIQTMRKQEMIDFIMKFKD ITFAESEI" CDS join(884327..884596,887573..887720,890841..890896) /gene="CBG03969" /locus_tag="CBG_03969" /standard_name="CBG03969" /product="Protein CBG03969" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVV6" /protein_id="CAP24769.1" /translation="MDHFNSMSRDDLRKEVIKLLDIMSGGVKSKRILKSQQLKSMSTP ELLTFIREHLQVNQAEIRTFPNVPLKEIFPYDDLIFSDYKETRKGIQKKDSQKSENFA VRSETKELCVGEDREEWYHHACQELMMNMENLQSRGSDSHSTMAFGNVNIKPNLL" CDS join(887055..887143,888235..888902,888964..889010, 889067..890719,891041..891154) /gene="CBG03970" /locus_tag="CBG_03970" /standard_name="CBG03970" /product="Protein CBG03970" /note="contains similarity to Pfam domain PF02945 Recombination endonuclease VII contains similarity to Interpro domain IPR004211 (Recombination endonuclease VII)" /note="Predicted" /db_xref="InterPro:IPR004211" /db_xref="InterPro:IPR012337" /db_xref="InterPro:IPR038563" /db_xref="UniProtKB/TrEMBL:A8WVV7" /protein_id="CAP24770.1" /translation="MAYTSYFEALEECQLSSLEYRRLYNYLVYTCHCYYNVNINNESR SNYHRHLEDCGRNKPIEHNLSSEKHIKFQNIGKTQKHRYVIYADFESIIKKYYTQLNN PEESWTTDVGKHIPAGFCVVLVDSYEKKIYAKKSYIGYDAALEFNKYIIEISREILKL GNVRMKQLSQKEWTDYNENKECPNCKIKYNSKNMKTTKVRDHDHWTGEYRGPLCGSCN LAKRKNNFIPIFFHNLRGYDSHLIVGCLESTKYLFINYLQRQITFMIEWSNMTSDNFK ISKDYYSSCKEVVEKFELMQRKGVYPYEYMDSFKRFQEMKLPHISLFYDKLNGKECSQ KDYLYAKLVWNKMNCSTLEDYTRIYMINDVLLLADVFENFRNLSLRVYELDPCWYFTS PGLARDAMLKKTKVELEVLQDVEKYLMIEKGIRGGIVNAVKRYSKVNNKYTNTFDPSI PSNYLMYLDANNLYGWAMKQKLPTGDFQFVIQSLIDVLNDERLKIEDYIDYLKNLGKG CIFEVDLEYPKDLHSKHNDFPLCPENVKINKQTVKKLCNTLFDKEKYVIHNENVLQCL QLGLKIKKIHRILTFKESKWLESYIEMNTNLRKTAKNDFEKDFFKLMNNSVFGKTMEN VRERVDVRLVTDEDKIIKLASKPNYKRTIMYNSELSAVEMEKTNIVLDKPIYIGFAIL DLSKWLMHDFHYNVMQKKYRNVELCYQDTDSLIYDIKTEDFYKDVEKDIYFRRHFDFS DYSEDHVLHSTENKKVVGKFKDELNGNIITEIVALKPKQYAFKTLDGDETKKSKGVKK NVVKNELTVDDYKHSLFNKTVVFYDFFWWIQSKRIKIINIFFILGVADPMSTFSTRRI " CDS complement(join(891850..891939,892071..892233, 892406..892527,892592..892794,892970..893077, 893124..893274,893318..893353)) /gene="CBG03971" /locus_tag="CBG_03971" /standard_name="CBG03971" /product="Protein CBG03971" /note="contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WVV8" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/TrEMBL:A8WVV8" /protein_id="CAP24771.1" /translation="MNEDENKGIVFQTGYELPSQQRVIMQIANLRLHAWGVFSNVYRG TLVSPGTEQEIAIKKTWPKTPERNFELLFLSGIRRKPHKNVVQMLSRGNYLKEYESKE YYWMVDVWSAGCVVGEMMKGKVLFPSTARDMMLKLIAQAIGIPSPRDHDYMKVAKMID PVSDVKVLGDVSQEWADFIGEILRYRPRERLHGPELLAHTFFDQIFTRNDCVAGKQYA MSVLRNEVKFTLKDALPTPVPVENSKENKDYKESKEVVKDGKETYCSSTKKIGTVDEK RRWSCPNLPKRQLP" CDS join(894322..894364,894418..896579) /gene="CBG03972" /locus_tag="CBG_03972" /standard_name="CBG03972" /product="Protein CBG03972" /note="Predicted" /db_xref="GOA:A8WVV9" /db_xref="UniProtKB/TrEMBL:A8WVV9" /protein_id="CAP24772.2" /translation="MSLQPEELQDVMNYLCLAATASITGAVISIGCTAGHRENFRNRG SKSKRSKRPKRSKSSRNRSDKGKKSSSRRKKKLRKVKSEKSKKSQKRSKKHKKKKRGS KSKSNSSKSKKSRKEASEKRNSKRGSSRGQKPIDKDRRDDDRGSSRSKRDSKRSQKSM ALEKNRSSKSNRDLSKKKSSRNKRDRNSSRSGKGSSRDKKMSNCGSEKSRHGSKRGDS SGKNGKDLSKNKSSHSLREDRKSSRSGKGSSREENGRNGKDHRDNSRSEKGRSRESKG ALVPVPLDRKKSRSRREENDRDRGERKSSKSNREKGSRRKRSTDGSQKSARGVIPLEK KPSSKSNRSKKDRDGDNREPSRKKSSRDNAKEERSRSKRSTVAPMDGGGLERKKSSRS NKYDEIDEKGAPLSKKKSSRKEGEGSRKYEKNMNEELDRKKSSRDNKVSNRGSEKSLH GSKREESDKRRSSERKSARSNQVERKSGSRNVEKTERGMSKLRADALRRMEPKPLVVS DHGFQNKSTKFQSPNANSDRFNCNEEGCRKRQCSKDARHSQQARRSASQRSLRTAREK RMTDGVGKSDEEVKKAPSQKSIKIEDETRAPPQISSEAPMRSVYLDTGKSSYGELSKP SMQPDQKSVYYPSSNDAPVEKKKSKKSIKQTKIEQQPSVRKSVSKQEIKSSRPSKTAS KRNVQNDSKRRPPTKTASKKDVDSSRPKSKAVQSSRAPKGSDHSHRTKKHRK" CDS join(896955..897032,897075..897233,897323..897550) /gene="CBG25247" /locus_tag="CBG_25247" /standard_name="CBG25247" /product="Protein CBG25247" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFL7" /protein_id="CAR98697.1" /translation="MARLPFLLFFGFIFQAANAEIPGATSAPDPVNDMLAMKLATRLL NAFDQRNYTEFNDFDVRFTFDDCRHDYEAAEFLAKYAFLDAMRIVRQYDGIQFTIHVE YLGQHHDVLANFQRIRLTTGSRWRWVHAWKSNCVQDHTNVIPESSMRQKILS" CDS complement(join(897647..897837,897891..898101)) /gene="CBG03974" /locus_tag="CBG_03974" /standard_name="CBG03974" /product="Protein CBG03974" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVW0" /protein_id="CAP24773.1" /translation="MKLQLFVLLSTLLLLLVSAKQTKIPEDVAKGEQLVRKVLKGIEL RDRKIVGSVFEDSFVYEGCKNTKLGKKEVMDMIGSTDLPMARVLESNTQILYIGSHKF GTITTDFGRSTESEFVVSKNWKLQSGRMTSC" CDS join(900190..900410,900463..900604,900856..900903, 900981..901326,901832..901947,902002..902082, 902128..902226,902276..902408,902458..902824, 903001..903364,903406..903645) /gene="CBG03975" /locus_tag="CBG_03975" /standard_name="CBG03975" /product="Protein CBG03975" /note="contains similarity to Pfam domains PF00907 (T-box) , PF04101 (Glycosyltransferase family 28 C-terminal domain) , PF00201 (UDP-glucoronosyl and UDP-glucosyl transferase) (2)contains similarity to Interpro domains IPR001699 (Transcription factor, T-box), IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR007235 (Glycosyl transferase, family 28, C-terminal)" /note="Predicted" /db_xref="GOA:A8WVW1" /db_xref="InterPro:IPR001699" /db_xref="InterPro:IPR002213" /db_xref="InterPro:IPR008967" /db_xref="InterPro:IPR035595" /db_xref="InterPro:IPR036960" /db_xref="UniProtKB/TrEMBL:A8WVW1" /protein_id="CAP24774.2" /translation="MSAYSSDTPTLSIPIGVTLQNLDVFESFYPAIMEQRLTPIGRIF SPIPTFCFTGLDVISDYQLSLRFEKICEGKYQYSTIKNRWVIDYGSSLNRVPSDKNIF MMQNIQTGAALMRKEIDFKDPQVASIKSSLNGYAKKTMLLTLQNHRLPTPPILTPTPT QGFNHRRTASSDSNSPICVPPAPTPSSCNSSPVGNCCQVRSTSSGSNTYFAGREHQFN LPHPAGSFNNFCPGIHHPPPGYHFNPPVYSHPPPICKPSKSLNVLVYSPVFGGSHSKF MGNIADALTEAGHNVTFLVPVADVTRRHEIGVKLTKNVIIVDKPNQDETNIQSIDMDE VLRPLWTIQNRPVDFETCFVFFLEMMKSNCDDFTSNKKVFEELSRTKFDVAIAEPVSI CGLGYFDALGINKTILASSTTHYEGVVRNSGEPVDMSYVPVHGAYFDEKMDIFQRYTN WAAAHVMAENLEVLFDEEMERYRKNLGANIGHWRDLIPLASVFFTNRISIWIFHVQSF KKLLESEGFQNSILDTIKQFPNVTFVWKYESDDLKWAEGVENVHFLKWIPQSALLNDD RVTAFLTHGGLGSTNELAYLGKPAIVVPIFGDQGRNAPMLARHGGALVLQKFDLDRKE ILVNSVQKIMFDKRWLCSKSEATLATSEFNSILSKRIGGEAHGIRRAIRTTHSNGSVY SSFELVPEDICRHLSFHDLILFTCSVCTIICSQKTL" CDS complement(join(903737..903992,904249..904413, 904461..904559,904610..904806,904853..904983, 905028..905078,905119..905320,905366..905504, 905548..905733,905782..905888,905933..906079, 906893..907003,907052..907328,907379..907602, 908218..908333,908380..908486,908810..908865, 909454..909639,909690..909781,911502..911613)) /gene="Cbr-nekl-1" /locus_tag="CBG_03977" /standard_name="CBG03977" /product="Protein CBR-NEKL-1" /note="C. briggsae CBR-NEKL-1 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00415 (Regulator of chromosome condensation (RCC1) repeat) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR000408 (Regulator of chromosome condensation, RCC1), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WVW3" /db_xref="InterPro:IPR000408" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR009091" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="UniProtKB/TrEMBL:A8WVW3" /protein_id="CAP24776.2" /translation="MSTVILCHAESVNLDAIRASDANIIRYSVTVKLNELKAMLKQYS SGKIRNLGLHIQSRDAKLQILEDMEITKDTLEDAGSFVSQFFRWMVSEVLIEGAFIDF LLTTPIENSSHLCLAVQSVSKKKVFTSSISVRLVSRFLSSELAPHNRRIVDIYINNEI MITNPNPRATSAQNRYERIRTVGKGAFGSAVLYRRKEDSSLVIIKEINMYDLDSSQRR LALNEVSLLSRIEHPNIIAYYDSFEEEGVLMIEMEYADGGTLAQMLARSQNLLEEEQI GDMMIQMCSAVAYLHENSVLHRDLKTANVFLTRDSFVKIGDFGISKIMGTETLAQGAK TVVGTPYYISPEMCSGVSYNEKSDMWALGCILYEMCCLKKAFEGDNLPALVNSIMTCA YTPVKGPYSTEMKMVIRELLQLDPQNRPSASQALKMLRPSENRHRHTSGSMRSSTSFT TLYDLHIPTITLSQISDLPGRISVKQIALSKTHTMILTNDNELFGFGDNSCGQLGLGK FTKIENGNLIESLKGRDIQSVGVGNYFSVVCCDRGTLMTIGTAKNLGLGKEAKDSAKP VLLEQLLRENIKDIYCGHDHVIAVLESGDCLGWGSNLSGQLGLSTLEHFFIPTKIAMP KEKKIVYGKAGKDATMLLSDDGCLIAMGSNKHNKLNLAQRVGFFAKEKKVSVKNSTIV EPALIGFPERVVDFSVGSYHSGVILESGQVMLFGKNDNTELGLGHNQKMAVRSVKPVK SLLHHACTHVLCGDGFTLVSTTEQELYFWGRKDYTEENVRIDDLEETVCDKKMKRSGS EMFDKNVVTLPSLILRLQDAKREKGIRLSGLAVSGRRVHVAVDMLEGKRLPSALAERC RSGSMPTINDETHTWLREEFEQAEVIPIDASKRRVRFDDSCDKLKMSSTAKQNSLVRE IEELKSKIKEQDTTFEGHRNQMSDLESKLQELQAKQAFLRKSEPPPAYDRRNVTYNKL FPERENASTTCVIL" CDS complement(join(913389..913501,913775..914739, 914787..915716,915791..915858)) /gene="Cbr-sydn-1" /locus_tag="CBG_03978" /standard_name="CBG03978" /product="Protein CBR-SYDN-1" /note="C. briggsae CBR-SYDN-1 protein ;" /note="Predicted" /db_xref="GOA:A8WVW4" /db_xref="UniProtKB/TrEMBL:A8WVW4" /protein_id="CAP24777.2" /translation="MEEPSTNPNNIVHAEPGSSEAKRRSISGHPGRPVLPPPPPAEAH FHRKRPRSTHHPTPNPKAPRKETDLVDRIWHEIDEEQREKLARKKEKKEQPAHSPRDY LPLTASNLRNFKDEDESIRDFIHRQGMVDRLLGYKMLFGRMENCVTLGYEKMADDEIT ELSAKWRKMFFPGEDPPEQKCPKVEPSSLPEDEDFKPIKKGPRTPPGSPGDSKPANQN AVSRFELIEQLAKNFGISPQKVEKTLGSGLDKALEDCSKKIKNELLETFKEQLLSQYD RKPTTDDLSDQMELVSEDSLSVDLAMVKKEEPNTDFSLYQMAVPPPPIPPKIQPAYAY YPPHVPPCAPAGPSLYPQYPPPPAPPSHAQSYQQSIMSYVSPNRLILFTDASSASSTT SVDTKWTSTTNALSNATGSEFPAASTGTCQHYDAPASEYPTASNRCSNRYSYTTAITS WQELKETNRAYPNTCFSAAPPLPTGMPPPPIPTQVPPPPLPPQMAAAPPPPLPPPAPP AAYSGDCWRSAPTAPSVPPPPTNSVEAWQQHVPPVAPAGVSVSSAPSVVNVQSTLFSA LGLHKFPPPPPPPPVNGNNSAAIAPPPLPFASLSGPPPPPPPPVAAGPASTCPLTFVP PPPPPNQQSNNINFSSPSSGYRRNSFNTGQVIYNIFIILSICNAFPESCQPYRFYLKV TSDFYTFFS" CDS complement(join(916183..916251,916298..916593, 916649..917252,917300..917376,917692..917911, 917960..918178,918268..918465)) /gene="CBG03979" /locus_tag="CBG_03979" /standard_name="CBG03979" /product="Protein CBG03979" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WVW5" /db_xref="UniProtKB/TrEMBL:A8WVW5" /protein_id="CAP24778.2" /translation="MEVSSKKTREFSVARSSADRIRTNSMNSNNSVTSTSAALQQNPE VINSSEDDIFFGRTTRKMWKAQTEQATASQHSPKWNEPDTDYSPPTKKPKKEKKEHKN TADSSFSEKSNSGKDPEKKKKKKDASKDIPISSKIMKTPKKERDSHTGSKHSDTPTAH RSTISSTPHSVPSQPKPTAPPPSMTIPQKPAEKLVKSEEPELTETLHGADLAAKYHNA LNTIKEVAASSSEAAAIQEAIESVLHQRTSPPQLTQAHNTMPYNPLQNAPAPAYQPAP TAPPQQLQQPNMVQPCSEIVPEQRHTFMIPPTDPLYDIIVSYYFEFKKYLNAAKNGES DLLNSLRQDIEAEKNRRIELNESAASTNCQIDELLSVGVHVLKRLLDQLGMMGVQDVS ELLSGSKQIVTQHKALSTNVAQLEQAVAIEEEKLKTLGAPDALKYYNEAMNQNVETEK LLQLIIASRPANFVPQTVLDKYLSNDSKVSPSSRRARQPKPKQGSSGKRGNSSGRKSD VPAEDVDLEIQQFVQHAMKVDNAVKEKERKERQHRPGRPALSNPVQVPSTSK" CDS complement(join(919172..919315,919364..919470, 919517..919560,919610..919816,919863..920071, 920117..920269,920314..920443,920488..920674, 920725..920755)) /gene="CBG03980" /locus_tag="CBG_03980" /standard_name="CBG03980" /product="Protein CBG03980" /note="contains similarity to Pfam domain PF08123 Histone methylation protein DOT1 contains similarity to Interpro domain IPR013110 (Histone methylation DOT1)" /note="Predicted" /db_xref="GOA:A8WVW6" /db_xref="InterPro:IPR025789" /db_xref="InterPro:IPR029063" /db_xref="InterPro:IPR030445" /db_xref="UniProtKB/TrEMBL:A8WVW6" /protein_id="CAP24779.1" /translation="MSEADAGRIEESPSREVGEPVDAMPVNDRRSSSVEVVNGDMLLL HSIFYQGKTLKLAGTHTHIYNVVFRILKHVCKKVAQLTVAFPAGWDNDKPDSAKVASL CKIYNRVAKPFASAWSGSYNTDTLDDWGERNCTQKVAIDITTYAYELAVPRPADLNHY YKSFTSETYGETNLEQMASIIDELNIGPQDVLVDLGSGIGQLVCFTAAYAKCRKTVGI ELSQTPANYANDLGDYFKKLMNHFGKTYGRFEHYQGDFLNPKFKKLICEEATVIFINN FAFSPELMFRITNELLQDLKHGTRIVTTKPFGDHKKELTVRSVGDINAISHTVELKSL DYGVSWTAKQVTFWLTTMDHTKLIRYYEEERRKKLEPSGSRERSQVTEKRKLDHKERD NRDTSNLNRGG" CDS join(921298..921387,921433..921748,921801..921894, 921944..922265,922309..922577,922626..922880, 922932..923505) /gene="Cbr-zwl-1" /locus_tag="CBG_03981" /standard_name="CBG03981" /product="Protein CBR-ZWL-1" /note="C. briggsae CBR-ZWL-1 protein; contains similarity to Pfam domain PF09817 Uncharacterized conserved protein (DUF2352) contains similarity to Interpro domain IPR018630 (RZZ complex, subunit zwilch)" /note="Predicted" /db_xref="GOA:P0C664" /db_xref="InterPro:IPR018630" /db_xref="UniProtKB/Swiss-Prot:P0C664" /protein_id="CAP24780.1" /translation="MSIKLEDLHSFNEAVLFKGEEDEAPAPVLLLDKYRVRLVPITEL PLVSNYSNTSQLGLNSEEVLVIDSPIESAEKQKTSSLLNRRENKKTIKSEKEDESMDM ETAEGDKENTVSETGGGPLVTSFLTLDKLEKDGVNDVEIVGLDCEIQFFDANPIPFED GISLQRFLRLESSKNFSAAVDKLPIWISTIGHHFPSVCWLAAGRTNKNVQVSGATRIL GYFNENSQKLVKQLNEACGAAQVNRYRAVYDVIRKIATPTREAPGEVIIDMRWNTKSS LVLLEQPDNAADCTIKIDLGWGDNRFFIDETIFEQLFFVLNLADVLANPEKEVVFRSE SDKFDDLVQEMKQLVEACSHEDNVFASNEKSEQVTDKVWNIVRKCSDVKQATMLFKNF LQALTYGKIKSHVQEGNKSHLASLIRASKTCDFRMPILERLSTIEMMMEIGVESLRGR IINKFSDTLQFPSDELTFILKTCENDLSTLEGTLHSSVVSLLPITMAMATIHQIFGFL NVKDLVVLPDLARRVLTKYTTGMVEKAKRGETETDYVFETTLPLLRMNKEAFMHKRPR IWTCENTNTVGANVQTRAMTTLELEPSLEHVCRLVNASRPVRPIDEDNRKPTEEERNA DYTVSHTIFSYLPKL" CDS join(926554..926703,926977..927084,927430..927588, 928659..929063,929111..929197) /gene="CBG03982" /locus_tag="CBG_03982" /standard_name="CBG03982" /product="Protein CBG03982" /note="Predicted" /db_xref="GOA:A8WVW8" /db_xref="InterPro:IPR036034" /db_xref="UniProtKB/TrEMBL:A8WVW8" /protein_id="CAP24781.2" /translation="MLTTSRFPRSASAYENTATSFDDEFDDEIPGFSEDTGVKKAEDV EKETLEVNIPRDQDQPNGMAFRMVGSRSRGIFIDYVHSDSPQFGYNSAQNYPNVQNFV FWEQEIFSIIHSLSSVLKNEKIMKKFCSQNTKFCIYVSKLLREGDKLLRCNKISLRAV SADQAASIFRFWMNRTDSLTLTVERRADGENVMLRRRRQARLSMCNEQREQTRHVVSG RATVRLTSSKSAEVFRCNDEAHVGVSSFRQRFPKYESFDTSPSKTICPHCNAQTRLLY LHQFSHGVVNNAFRFLTVSRSSYSLL" CDS complement(join(929327..929578,929625..930092, 930140..930187)) /gene="CBG03983" /locus_tag="CBG_03983" /standard_name="CBG03983" /product="Protein CBG03983" /note="contains similarity to Pfam domain PF01012 Electron transfer flavoprotein domain contains similarity to Interpro domains IPR012255 (Electron transfer flavoprotein, beta subunit), IPR014730 (Electron transfer flavoprotein, alpha/beta-subunit, N-terminal)" /note="Predicted" /db_xref="GOA:A8WVW9" /db_xref="InterPro:IPR012255" /db_xref="InterPro:IPR014729" /db_xref="InterPro:IPR014730" /db_xref="InterPro:IPR033948" /db_xref="UniProtKB/TrEMBL:A8WVW9" /protein_id="CAP24782.1" /translation="MKILVGVKRVVDYAVKIRVKPDRSGVFTEGVQHSMNPFDEIALE EAVKLKEKKLATEVVAFSLGGPKSAEVLRTALAKGADKAIHVQVSDDEAGKLESFHVA KTLQKIVEQEKFDAVFLGKQAIDDDSSQTAPILAGLLDWPQALYASKVEEGGSGHMKV TREIDVGLDTIKVKVPFVLSADLRLNEPRYATLPNIMKAKKKPLKNIPIKDLGVDITP QTETVEVTEPPVRKAGGFVEDVSALVAKLKEKGFVKA" CDS complement(join(930828..930945,930992..931350, 931467..931573,931619..931652)) /gene="CBG03984" /locus_tag="CBG_03984" /standard_name="CBG03984" /product="Protein CBG03984" /note="contains similarity to Pfam domain PF03357 Snf7 contains similarity to Interpro domain IPR005024 (Snf7)" /note="Predicted" /db_xref="GOA:A8WVX0" /db_xref="InterPro:IPR005024" /db_xref="UniProtKB/TrEMBL:A8WVX0" /protein_id="CAP24783.1" /translation="MGAGESSMALEKHLFDLKFAAKQLEKNAQRCEKEEKVEKDKLTA AIKKGNKEVAQVHAENAIRKKNEAVNYIKMAARIDAVAARVQTAATQKRVTASMSGVV KAMESAMKSMNLEKVQQLMDRFERDFEDLDVTTKTMEKTMDGTTVLNAPKSQVDALIA EAADKAGIELNQELPSNVPTALPTGTQAVSEDKDLTERLAALRNM" assembly_gap 932515..933391 /estimated_length=877 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(933841..933891,933939..934127, 934171..934303,934345..934516,934565..934892)) /gene="CBG25248" /locus_tag="CBG_25248" /standard_name="CBG25248" /product="Protein CBG25248" /note="contains similarity to Pfam domains PF06293 (Lipopolysaccharide kinase (Kdo/WaaP) family) , PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR020636 (Calcium/calmodulin-dependent/calcium- dependent protein kinase), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR010440 (Lipopolysaccharide kinase), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:B6IFL8" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/TrEMBL:B6IFL8" /protein_id="CAR98698.1" /translation="MVFRVGLSISGTFPANPIATTAHSVVFKVHSKLYRRDVVVKIVN RNAIPPSIAEKFLPRELDITMKVRHPHIARCLAITRPAPTKIVIISDYYERSTLLDLI LTHKRLKENPLSVTLFRQLIEAINYLHKRGIAHRDVKLENIMIDGNGDIKLIDFGFAR HIERRERSRSFCGTQPYTCPQITRFRPYEPFTADYYACGIVLFTMVVGKWPNLAMSSM NIFPDKLPSRSCRRLITSLLDENESCRAGYDECVNSEWMGGHPVWMFANHAYFYEEVS NRDEDPSNFEMSEI" CDS complement(join(935097..935299,935349..935613, 935661..935765,935810..935877,935923..936001)) /gene="CBG03985" /locus_tag="CBG_03985" /standard_name="CBG03985" /product="Protein CBG03985" /note="contains similarity to Pfam domain PF07962 Replication Fork Protection Component Swi3 contains similarity to Interpro domain IPR012923 (Replication fork protection component Swi3)" /note="Predicted" /db_xref="GOA:Q61XH2" /db_xref="InterPro:IPR012923" /db_xref="InterPro:IPR040038" /db_xref="UniProtKB/Swiss-Prot:Q61XH2" /protein_id="CAP24784.1" /translation="MDEMDDFFGNDELDREPSPFGEEAIEDNTGEEGSRRIIEPKLLR TKKLTNPRLALNEKTLTGPKGITALREAFQNFNPNPKDDPYKNLEKMMKKYAYWGHLM FPKMKTEDVLNRVETLGTRRQVKLYIMKQRLGESTDDVENEKRETKSKNGIIDDGADD DEDDLFNDLPEKETPTKPINHTEKVVDSPEKKNGQVSNNDAEEEEYRMMEEERLREEQ EAREAEAEDELMEDFDLNNDW" assembly_gap 936380..936389 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 939538..939938 /estimated_length=401 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(940382..940468,940512..940648,940726..941251, 941299..941422,941468..941511) /gene="Cbr-ubxn-1" /locus_tag="CBG_03986" /standard_name="CBG03986" /product="Protein CBR-UBXN-1" /note="C. briggsae CBR-UBXN-1 protein; contains similarity to Pfam domain PF00789 UBX domain contains similarity to Interpro domains IPR001012 (UBX), IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:A8WVX3" /db_xref="InterPro:IPR001012" /db_xref="InterPro:IPR009060" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR029071" /db_xref="UniProtKB/TrEMBL:A8WVX3" /protein_id="CAP24785.1" /translation="MSIAQQLVDMGFPADKAEAAAGNNRNLDQALDWIEKDGAGVPME TENPASGTDGSSAMVDEESVSAAAASFKCDDCGKLLANEDAIMFHATKTKHENFSESQ EQIKPLTPEEKAAKVLEIREKIKVHQAKKAKIEAEEAREKERKRREDGKAMIAHKEAA RDREIREAAQQRRREKTEDEIARQRVLEQIKADKEARKAKAAGQPVPEPKPAASVAPV VAAPPKDYKSTTLQFRLLDGQIVRQQFQADEPLAMVRAWIDTNHANGVGFSLMTPFPR KVFTEDDMGTPLKALNLVPSANIVLNRLG" CDS complement(join(941692..941898,941942..942352, 942403..942639,942685..942758,943054..943444)) /gene="Cbr-inx-19" /locus_tag="CBG_03987" /standard_name="CBG03987" /product="Protein CBR-INX-19" /note="C. briggsae CBR-INX-19 protein; contains similarity to Pfam domain PF00876 Innexin contains similarity to Interpro domain IPR000990 (Innexin)" /note="Predicted" /db_xref="GOA:A8WVX4" /db_xref="InterPro:IPR000990" /db_xref="UniProtKB/Swiss-Prot:A8WVX4" /protein_id="CAP24786.2" /translation="MFFHATLARSFISALSVRGDDDAVDRLNYYYTPLILAVCCLVIS AKQYGGTPIECWVNPHSRESMEEYIESYCWIQNTYWIPMYENVPDDHTAREEKQIGYY QWVPFILIAEALMFSLPCIFWRLCSFQSGLNIQTLINAACDAQALLDYSDRQKAVEAI TCNFVDNLDLQSPNGRIRARGWIARIKFSRFLSGQCISIVYSFTKLLYSVNVVAQFFI LNACLKSSEFVFFGFQVLSDIWAGRPWTETGHFPRVTLCDFEVRYLANLNRYTVQCAL LINIINEKVFAFLWCWYMILAIITTCSFIYWIANSFIHSEKVDYVMKFIQIAESSEYK KLQKFEKDATVERLYTVIAFAPHLLDSFVSDFLKSDGILMLRMISNHAGDMIVVQLVR NLWQEYRERNWREFEEHEEMKDVEMRRIQGTRERIVIANPGQTKSFL" assembly_gap 946107..946173 /estimated_length=67 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(948461..948663,948711..948922, 948985..949043)) /gene="CBG03988" /locus_tag="CBG_03988" /standard_name="CBG03988" /product="Protein CBG03988" /note="contains similarity to Interpro domain IPR007919 (Uncharacterised protein family UPF0220)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WVX5" /db_xref="InterPro:IPR007919" /db_xref="UniProtKB/TrEMBL:A8WVX5" /protein_id="CAP24787.1" /translation="MSGCFDQIRCNCAFDLEGRRNAVASVASAALFFIAWWLMIDTAA VYDSKDWTNVYFIITISSTLAMFMVNAISNSQVRGESLHEGLLGTKGARLWLMAAFVV SFASLVAATWILFSDYVLRQGEHTVWPGVALFLTNFIIFASSCVYKFGRTEEMWA" CDS join(949278..949369,949404..949416) /gene="CBG25249" /locus_tag="CBG_25249" /standard_name="CBG25249" /product="Protein CBG25249" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFL9" /protein_id="CAR98699.1" /translation="MNLERAIYRCETTGKKTQIFTPDTRSKILKNKKI" CDS complement(join(949480..949566,949613..949876, 949925..950038,950060..951261,951309..951848, 951887..952178,952407..952484,952531..952590)) /gene="Cbr-abtm-1" /locus_tag="CBG_03989" /standard_name="CBG03989" /product="Protein CBR-ABTM-1" /note="C. briggsae CBR-ABTM-1 protein; contains similarity to Pfam domains PF00664 (ABC transporter transmembrane region) , PF00005 (ABC transporter) contains similarity to Interpro domains IPR003439 (ABC transporter-like), IPR017871 (ABC transporter, conserved site), IPR001140 (ABC transporter, transmembrane domain), IPR003593 (ATPase, AAA+ type, core)" /note="Predicted" /db_xref="GOA:A8WVX6" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011527" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR036640" /db_xref="InterPro:IPR039421" /db_xref="UniProtKB/TrEMBL:A8WVX6" /protein_id="CAP24788.2" /translation="MLQLRLISSLRNSSSTWKSQGLYRNFSTLTKKPTLIKNAPQILS KNHTSDWCERDVSVAHFTLVTESDSVVLVHAVNSLSVLNELSLSILFPACETSRGFEL AHALLIVASFADTATVSEVAVVSDFDSAHSRSSESKNEKSKQTINSASFHEDMLSPWR QQSSAFAGKEDRKKKERDETDEDCMLRAPFMQSLSLSCLWEFPDSFLLILTASHLRLG YCGGVFEQMGIRFLIFQASGQLTGYQLVQRLLKYVWPKDKPEIKRRVLVALSLLVAAK LANVSVPFLLRDVVNYYNGKAPEFLKLTFAGTASQTIFTAGIATCIAYGLARATSAAF NELRNAVFAKVAQNSVRSISRSIFLHLHSLDLSFHLNRQTGALSKAIDRGTRGMSFVL SSLIFNLIPTAVEIGMVSALFTGTLGAEFAYMTMGSIGMYGVATLGITRWRTKFRHQM NQADNDAGNKAIDSLINYETVKYFNNEKFEADRYDHFLKKYEGASLKTTSSLALLNFT QNAIFSGALIGVMCMAGNRIAAGDFTIGDLILANTLLFQLSIPLNFLGSVYREVRQGL VDMNQMFSLLTLKPKIVEVSDAKKLEITGNHITLNFEDVHFGYLPEKPILQGLNLEIP AGKKVAIVGGSGSGKSTIVRLLYRLYDTESGTVKINGEETRSLTLDSLRQSISIVPQD SVLFHDTIYYNLAYGRPSASKEEVIQAAKMADLHESVLRMPNSNKINNCFQGYETLVG ERGLKLSGGEKQRVAIARAILKNAPFVIYDEATSSLDAITEANIMKALKGAVEKRTSL FIAHRLATIVDADIIYVLQEGKVVEKGSHFDLLAQDGLYAELWRSQNIHGVAPKKTKQ DDDDLLLELDLDKCCGSSSCNR" CDS 951876..952322 /gene="CBG03990" /locus_tag="CBG_03990" /standard_name="CBG03990" /product="Protein CBG03990" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVX7" /protein_id="CAP24789.1" /translation="MSPTFALFILGLAASTVSAVKIGDDCDLGNRRRIGKGSYYEECV SKFETAGCFASWEQDAQAQFVKHGETIDRMYKNNAVGFRYKCEMSNGYISFAPIGCVL NKKDGLALLELNASGQLDNGQNVKCKQNNEGEFSFEFGSEAPQQNN" CDS join(953116..953251,953299..953393,953442..953523, 953570..953826,953873..954227,954273..954331) /gene="Cbr-eif-3.I" /locus_tag="CBG_03991" /standard_name="CBG03991" /product="Protein CBR-EIF-3.I" /note="C. briggsae CBR-EIF-3.I protein; contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR019775 (WD40 repeat, conserved site), IPR001680 (WD40 repeat)" /note="Predicted" /db_xref="GOA:A8WVX8" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR019775" /db_xref="InterPro:IPR027525" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/Swiss-Prot:A8WVX8" /protein_id="CAP24790.1" /translation="MRPLSLKGHERALTRVRFNREGDLTFSCAKDKKPCVWYTENGER IGSYDGHNGAVWDIDVSWDTSKCVTASGDLTVKIWDAELGSCIYTINHQTPMKSCGFS YSGNLVCYTTQKMTKNLSTVQVRDLRDGNQMAEGAESFFSTQFDVNATTALFSQMDDI ITIGFESGLLQQYDLRNPDSPINTNEVVHRYSIQDLQLSPRGDFLISASRDKTAALLD VNDLKKLKQYKSERPVNSACIAPNRDHICLGGGEDAMQVTQTAVSAGHFEAKIYHMVF EEEFARFKGHFGPINTMAWHPSGSIIATGGEDGYVRIQEFDEDYLGFTYDF" CDS join(954851..955057,955102..955722,955768..957192) /gene="CBG03992" /locus_tag="CBG_03992" /standard_name="CBG03992" /product="Protein CBG03992" /note="contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase) , PF00271 (Helicase conserved C-terminal domain) contains similarity to Interpro domains IPR011545 (DNA/RNA helicase, DEAD/DEAH box type, N-terminal), IPR000629 (RNA helicase, ATP-dependent, DEAD-box, conserved site), IPR014001 (DEAD-like helicase), IPR001650 (Helicase, C-terminal)" /note="Predicted" /db_xref="GOA:A8WVX9" /db_xref="InterPro:IPR000629" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014014" /db_xref="InterPro:IPR025313" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8WVX9" /protein_id="CAP24791.1" /translation="MPHTNKKVNNQQWKGGNGKRKRKFDGEQDASVMKVLKEKRLQKK RKQDLKGQEEKMLEEVENKYQEMLKKSSRTFLRFEDFPLSWRTLEGLKENEYVKPTEI QRDTIAHSLTGADVVGAAKTGSGKTLALVIPILEALWRVKWSPEYGLGALVISPTREL ALQTFSTINAVGKHHGFSCGLVIGGSEVAFERNRISGINIIVCTPGRLLQHMDENEQM NCDSLQILVLDEADRMLDMGFSKQLNSIINNLPAERQTLLFSATQTRNVKDLSRVCTN DPVFVSVHENSAAATPDNLKQSYVVVEEEIKINTLWSFIEAHKKKKSLVFVSSCKQAR FLTEVFSQLRPGLPVMGLWGTMNQKKRIETFTKYDESKAAVLIATDVASRGLDFERID WVIQVDCPAQIDDYIHRVGRSARMEESGNSLLMVTSSQEEAMISKLAKHSIPIEELKI HPDAMTDVRLKLRAILAESQELKEYAQKSIVAYLRSIYTMKDKKIFNVNTIDAAALAD SFGLVSVPRIRFLDKNKNDKKKTKTTTIKAADDNCDESEDEEEQKPSKDHSLVGKFAI DEEDEDLFTVKKSKDGTEDQPKEEFKVEEEEEVAEKITLKKNKPLKKALTKVGAAKKI LNKNLRVNTKKTFEEDDDAKVEGPSTMTSYGLDIEKAKQDMKSVDKEDRRRFKELREQ RRQEKLAKKNKKSEVFEMEAEETDDEPDISWLPDPDAVRTKYEESDDNYESMDASLLE KQALAMLGRN" CDS join(957370..957661,957708..958143,958190..958665, 958711..958831,958877..958947,958990..959273) /gene="CBG03993" /locus_tag="CBG_03993" /standard_name="CBG03993" /product="Protein CBG03993" /note="contains similarity to Pfam domains PF09384 (UTP15 C terminal) , PF00400 (WD domain, G-beta repeat) (5)contains similarity to Interpro domains IPR019775 (WD40 repeat, conserved site), IPR018983 (U3 small nucleolar RNA-associated protein 15, C-terminal), IPR001680 (WD40 repeat)" /note="Predicted" /db_xref="GOA:A8WVY0" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR018983" /db_xref="InterPro:IPR019775" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:A8WVY0" /protein_id="CAP24792.1" /translation="MAQPYLPAEKFLSRKQDTILLDEDVVYWKRMQQLTVFQEPSVVS SVRISPKKPFHVATTSSVRLTLYDTVVCEPLNLFSRFKKGVCSIDFRHDGRLLAIGGD EGKVRIFDVEKTTGSSKVALRVMQASQSTVKSVHFSPRGDTIFSLADDGKIKQYRVAD TAYGVNAVPLIEIQAHDDAIRCGAVSSLNDHIVLTGGYDHKVRLWDIRSKEKTMELNC EHPVESVLFLPGEQLIATAAGPIVKIWDTTTGRPLTVLQAHYKTVTSLRLATNSTCLL TAGIDRRVNAFRTTNYSLIHSWSMPSPVLDIDVSRDDQTMAVGMGNLLALYRRAEIKK ETTATAMIEDKRSLVRTSAPPVKLAEKDRDSRKVEVVAKNADKLKIPKIDGMLSNFKH SGVIRLLFSGKFRSSVDAAVVSYLRVIVMRGAIHRALAGQETTVQKNLLIFLNHHLFR TEYFSILKDVTIAFFDVYASDKLDRDVFKQVQRLRVTLSRELEVQKMISSLVGSVDLI VSTTKINIKSTADLIEDNDVFGEPTIRARDLDELKPSKGGPEVEEEPMQTN" CDS complement(join(966059..966166,966328..966372)) /gene="CBG25250" /locus_tag="CBG_25250" /standard_name="CBG25250" /product="Protein CBG25250" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFM0" /protein_id="CAR98700.1" /translation="MSSQSFRNFQKEPKNKKRCHVAKKEGREGKVLKVFLLIQHIVLN IFSVLI" CDS join(975813..975872,979137..979465,979521..979813, 979988..980324,980420..980507,980558..980674) /gene="Cbr-dmsr-2" /locus_tag="CBG_03995" /standard_name="CBG03995" /product="Protein CBR-DMSR-2" /note="C. briggsae CBR-DMSR-2 protein; contains similarity to Pfam domains PF00001 (7 transmembrane receptor (rhodopsin family)) , PF10328 (Serpentine type 7TM GPCR chemoreceptor Srx) , PF10324 (Serpentine type 7TM GPCR chemoreceptor Srw) contains similarity to Interpro domains IPR019427 (7TM GPCR, serpentine receptor class w (Srw)), IPR019430 (7TM GPCR, serpentine receptor class x (Srx)), IPR000276 (GPCR, rhodopsin-like, 7TM)" /note="Predicted" /db_xref="GOA:A8WVY1" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR017452" /db_xref="InterPro:IPR019427" /db_xref="UniProtKB/TrEMBL:A8WVY1" /protein_id="CAP24793.2" /translation="MSCMGLNSTELQEARDYFKQLLLPFTSSFTIFHNYVYVFLCVVG VFANISIVVVLIRPAMRKSPFNLFLVVIALCDASLMGTYLAYKHVELCHPWYFSFPWA IYTKFYAIFSVFVHSCSLWLTVNMAILRFLVLYRGSRSETRIPQCNGFGAAYIAIILA FLIACIGCLPIFIRYRIIEGEAGAVPDLCLVGKYADKWEPTDMIRFYGLSQPLWWNCD FERINYWMAALILKLIPCLLLTIFMTLLVRMLIEARERRSRLCGGMGNGNSQAERTTA MLTGIVAIFLITELPQGVLTFAAGASPRLTFLTLQLNNVFDLLSLINSAVNFVLCALM SHVFRREFLLTFSMCCPQSSENHSGAPINKTSNRSILSTFSNIAKPKTSKKNGFLPVP TNCPDDKNTVQLAMN" CDS 983161..983472 /gene="CBG03996" /locus_tag="CBG_03996" /standard_name="CBG03996" /product="Protein CBG03996" /note="contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domain IPR000535 (Major sperm protein)" /note="Predicted" /db_xref="InterPro:IPR000535" /db_xref="InterPro:IPR008962" /db_xref="InterPro:IPR013783" /db_xref="UniProtKB/TrEMBL:A8WVY2" /protein_id="CAP24794.1" /translation="MSLTANPPTCTVPAAGGTSTHKLVNGGADKFIFKIKSSNNNEYR TTPVFGFIDPTGYHHSHCWSTKGGQAHFANAPADATDAQAAFAAVTPAGTVTIPMFAT A" CDS complement(join(983843..983863,983912..984486, 984540..984576,984631..984702)) /gene="CBG03997" /locus_tag="CBG_03997" /standard_name="CBG03997" /product="Protein CBG03997" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVY3" /protein_id="CAP24795.1" /translation="MPMLIVLTVFELLVISTALIFCGKKKNKAPVSVQQPPVRPVTST ISPIVPQTPLPEEPAKKPEEKKEEVEKKEKSKKEEEKKEEKKSEKKEDKKSDKKSEDK KADEKKSEKKSEEKKDEKKSEEKEKSVDKAEDKKKDNAKKSEKKSEKKKSEKKKEEEK NDDGKKEDDKKEEKKEEKKEEKKEEPPKVEVNRDEEVKKESSKKDGSKKEPKKDALVE NPIITEVSDRDDKDKK" CDS complement(join(987937..988128,988403..988477)) /gene="CBG03998" /locus_tag="CBG_03998" /standard_name="CBG03998" /product="Protein CBG03998" /note="Predicted" /db_xref="GOA:A8WVY4" /db_xref="UniProtKB/TrEMBL:A8WVY4" /protein_id="CAP24796.1" /translation="MALLSILLLLAIAGNTQADIREVREESMEVEVRTLRPFPKITDT EDDSTRMQVFVVLLVAFCVSLTITVIIRFLRKYSERQRLYSSFN" CDS join(990440..990624,990674..990767,990813..990925, 990973..991144,991187..991325,991375..991496, 991725..991840,991885..992276,992321..992394, 992558..992659,992704..992806,993207..993318, 993478..993657,993705..993865,993917..994011, 994056..994203,994526..994641,994706..994975) /gene="CBG03999" /locus_tag="CBG_03999" /standard_name="CBG03999" /product="Protein CBG03999" /note="contains similarity to Pfam domain PF09848 Uncharacterized conserved protein (DUF2075) contains similarity to Interpro domains IPR018647 (Domain of unknown function DUF2075), IPR014001 (DEAD-like helicase)" /note="Predicted" /db_xref="GOA:A8WVY5" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR041677" /db_xref="InterPro:IPR041679" /db_xref="UniProtKB/TrEMBL:A8WVY5" /protein_id="CAP24797.2" /translation="MTANQNLYSGFFLKCLPDNENGEHLIRVACFKPGTTFRKVLELT TNVSCERKFGEIVHFWSLDGEMTDKSHIKFKDDQPPLFQHETAAVNEIVHLIQNHQVN IQDIRPLNVLWHSFLGEINCDRFPPSPARYMFLLIQVNVKKDTFEIELMGGREEDLKQ KKSLDITLEQQIANYPEVLKIENDHTCQSENSAWKEIGFFELKKFSDKELTGGIRVIF RLCDSKGLISLKRRRQAYPAKIIKQRINGNEFEDDPNYSIESGSLFEREKKNKIIEEE VVCKLKSESRASFERNFKAGDVFRFESEQNPSNVEFWQKQLQKMMPLYNLTIDDAPES LQVQDILDNHQVEAEKLRKLTDKGFPPMNLNPSQLLAIRMAMNEDRPLVCIQGPPGTG KSHTLSYLLFRIMRSKKQAVVLTPTREALKNLKQMTEKLLKEREQEFQVHEHALMDIK TYHKLIDASDEAKSAIEQIRSIREDAQMGEIAHEDYSESSRRLEKAVCSEVGREILKN VRVVFSTIESSFVTEVMKVQSFQPAMCLVDEAAQVMECQTWPAVLKMKKLVLAGDPKQ LPALVKTKLGRDLKLNQSVMERLMLKKENYSWVMLNTQYRSHEEITHWSNSCFYDCHL KSSTKDEKKLVDELNPKPSFTGLYEPMVHIDTSGVKTDPERALTYEQRVTLVTDGEKE YSYSNIGEATYAMQHYKNLLDMGVKPENIALISPYRGQIELLGRMIDEYCKTSNNMDC KNTKIGTVDSVQGQEYDVVIFTSVRNNPKKNFGFVSDVRRLNVVVTRAKRHFVLIGSG YMFKHNHISEYHPQLESTIPSSSSNRRVPGLDLEPRNNFGFNFENFMKNSEDTDMIAW CEEWIRNGKDPLRAQTDDWKLKKLRDELRSQLYRSLNDENS" CDS join(995227..995396,995446..995530,995577..995682, 995748..995967,996017..996155) /gene="CBG04000" /locus_tag="CBG_04000" /standard_name="CBG04000" /product="Protein CBG04000" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WVY6" /protein_id="CAP24798.1" /translation="MNSATHVLDLSDRENVENYNQIINVKLEQFPVLFRRSICIHSSL QFVDLLMQNLMFSHGFTSTPVIPNQNNGVTNAPKTMIPFYKIRKEFREIFRSRHRNTL SEIAMFVGPCPVRSTYSYRVPIFVCEAEDSTHDSCGDTCGELSDVERRKINRDLFMHS LKDQNDKKMSNKNHRLFVFLKGSEDMVNEEIEEEDPPFDCKSCHEYSFVHEKCNCEGV RAMRTDGKWLRMLPFIVHSKH" CDS join(996467..996546,996590..997151) /gene="CBG04001" /locus_tag="CBG_04001" /standard_name="CBG04001" /product="Protein CBG04001" /note="contains similarity to Pfam domain PF05154 TM2 domain contains similarity to Interpro domain IPR007829 (TM2)" /note="Predicted" /db_xref="GOA:A8WVY7" /db_xref="InterPro:IPR007829" /db_xref="UniProtKB/TrEMBL:A8WVY7" /protein_id="CAP24799.2" /translation="MRTTSHILTILTAFLFFVPTIGSSTEIKEVKPLNCDGNAGLSCV FPKDCRLGETVMVNCTTRNDCPNPVSKNNLEAVCRFCWQLPEGDYDCEPPTNCSTSST KLQLTKCSVVRSVEYLKDVFVFQAHSSILCMGQRKFYKRIPCNWSSGYSWTKTMVLSV VLGGFGADRFYLGLWKSAIGKLFSFGGLGVWTILDVILIAVGYIKPYDGSMYI" CDS join(997387..997506,997559..997864,997911..998065, 998108..998459) /gene="Cbr-cps-6" /locus_tag="CBG_04002" /standard_name="CBG04002" /product="Protein CBR-CPS-6" /note="C. briggsae CBR-CPS-6 protein; contains similarity to Pfam domain PF01223 DNA/RNA non-specific endonuclease contains similarity to Interpro domains IPR001604 (DNA/RNA non-specific endonuclease), IPR020821 (Extracellular Endonuclease, subunit A), IPR018524 (DNA/RNA non-specific endonuclease, active site)" /note="Predicted" /db_xref="GOA:A8WVY8" /db_xref="InterPro:IPR001604" /db_xref="InterPro:IPR018524" /db_xref="InterPro:IPR020821" /db_xref="InterPro:IPR040255" /db_xref="UniProtKB/TrEMBL:A8WVY8" /protein_id="CAP24800.1" /translation="MIGKVAGTAAVAGLSFLAGKYSNDDLPFFRNIHSATNVLMNQIQ LPATVSTDLKPAELNADTLGPSRSAEIMKHGYPGFTNVRTYEDFVLSYDFKTKTAHWV CEHLTPERLKHADGVDRKLCEFKPDVTFPQKFLSQNTDYRASGFDRGHLAAAGNHRKS QLAVDQTFYLSNMSPQVGRGFNRDKWNDLEMHCRRVAKKMLNTYIVTGPLYLPKLEGD GRKYIKYQVIGDNNVAVPTHFFKVALFEVTPGKFELEAYILPNAVIEDTVEISKFYVP LDAVERSAGLEIFTRIDPKSIVKVNGVKKGGLLW" CDS complement(join(998791..999057,999100..999394, 999442..999541,999586..999649,999695..999835, 999874..999996,1000042..1000158)) /gene="Cbr-eif-3.H" /locus_tag="CBG_04003" /standard_name="CBG04003" /product="Protein CBR-EIF-3.H" /note="C. briggsae CBR-EIF-3.H protein; contains similarity to Pfam domain PF01398 JAB1/Mov34/MPN/PAD-1 ubiquitin protease contains similarity to Interpro domain IPR000555 (Mov34/MPN/PAD-1)" /note="Predicted" /db_xref="GOA:A8WVY9" /db_xref="InterPro:IPR000555" /db_xref="InterPro:IPR027524" /db_xref="InterPro:IPR037518" /db_xref="UniProtKB/Swiss-Prot:A8WVY9" /protein_id="CAP24801.2" /translation="MSTAVTITAPSVKHILLDSLVVMKIVKHVDSELHAGISEVSGDA CAGVLTGLVFLEDSRLEITNCFPTVRNEPVIDDDANTPQAAQQYEEQKQQEMLDMLRK FRTMNIDYEIVGFYQSHQFGAGFSHDLVESMFDYQAMGPENVVLIYDPIKTRQGQLSI RAWRLSTAALDLASKNDWRPELVKSAGLTYQNMFEELPIIIKSSYLNNVLMSELALSK SYSSDKYSTRHFDLGSKKSLEKSVRAMMANVDELNKSIQSLTKYTIDKQRHDNMVFSL TQKRQQENESRLARGDPPLPMDDIKRIKAPQLQTRNGLLDELLASFDTNALADFSKTV TSENITKLFIAEAVAEEKVVGTKDRTLSSVSSTR" CDS join(1000494..1000550,1000599..1000691,1000744..1001319, 1001367..1001580,1001622..1001746,1001795..1001879, 1001925..1002002,1004560..1004708,1005070..1005210, 1005693..1006011,1006061..1006743,1006795..1007007, 1007056..1007187) /gene="CBG04004" /locus_tag="CBG_04004" /standard_name="CBG04004" /product="Protein CBG04004" /note="contains similarity to Interpro domain IPR023260 (Cysteine/serine-rich nuclear protein family)" /note="Predicted" /db_xref="InterPro:IPR023260" /db_xref="InterPro:IPR031972" /db_xref="UniProtKB/TrEMBL:A8WVZ0" /protein_id="CAP24802.2" /translation="MQTEPPGYSKELPQNEEKTMPLIAPCPPRGLKRMEGTSKLKPIA PDSPVKRFQAPSSSSLLGHSVSMPSMRLGTGSTPVRPFVANGQIVTPTMGSLLTRTLT SSIPFKVMTPAEKRVPAPLKIHQTKGTITPIRLKIERTPGGTINKAVVVPKLPESEIS RNSDDGQVTPPAGMKRSTSGSMLLRRTPERIRRQEEIETSPEKRMRRSGSIPRSLRLE ESLPIPLSDNQTPVLKRKRTSSLTSLFSDMPVLTPQTRLRPRGVSESREDRTSPQKGI VSPLKKRSRQVSGSKPPSPLKKRDFSTVSITMTGGDQGTSNRLSRTPVRNIRSTIFNP KVVSDHIAQTYGQGIKRPIDTDLLSSSNPVPPKLITRSTSGETYYSAIEDELAQQEET ITERAEVFLTPHASECSAQESFDFLPIFENYWTRCLCALSDFFHRAAQTENRENKRPI SVLGTVLPGMLNGEEDEGFGDSMKTIKKGQGTALARSLSLKLSPLNQEIKPIGNTEKS CSTPSLPTAPLLRQGSTSSLRFKVSPSNFLKSITVTPVTRPIEIVPQPSLAPVAPVDP VVIPESSPVELSEPSTSGGIKEMAVVRKSVLKAPKAAFKIRENHMQGSRRRQIKFNGL DVHYFDRCQGESTVPSEGDVSLDMHNTHHCHRYFSLASGKRPLLDLALYDDGELSEGE EIYPDSDDQEYDEYASAKTINRLNQRLRIKMLKKSGVKVEKTAVAESWRATRTVCGCS CENGVCLPDTCECALSGINCQVDGGNWPTHPCTCVVDTCDNPNGRICYDQEAVFSYRR KTIDFWKASQVTGITGSPQVTKFVDSDDKEDKQSKNWHLKNITLEQSPTKFPVTPVYT RRARSTLSDIRESGSEASTSVTPSTSLSERMKAMQHLENEVCVEVEEKEYEDVDKEET LVEADLTLQEVYVTREPESMNSGTDLLDTPMSPVKTTLVV" assembly_gap 1007671..1007754 /estimated_length=84 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(1008998..1009099,1009150..1009245,1010322..1010396, 1010452..1010513,1010682..1011651) /gene="CBG25251" /locus_tag="CBG_25251" /standard_name="CBG25251" /product="Protein CBG25251" /note="Predicted" /db_xref="GOA:B6IFM1" /db_xref="InterPro:IPR007855" /db_xref="UniProtKB/TrEMBL:B6IFM1" /protein_id="CAR98701.1" /translation="MTTSVITSFVKLSIPGNKNGDDSHIEEQENFVITRFNQNRIETK IDGERIKVSSDHEDPFFETTFQIKSESGFPSWFLDIVAQVVDGLDRTNQRLAGTLSLH HPALFDKTLILSERDLPTERILFGNIWDTIFYNHWDVCFPNRNNHKRNNNSQNRSTQR NGHIVEYDKIKSHFDFDRPYPITVEFTIREQRLREVPEEPEKGNKQVITADKGQEKSK MKTVMQLADVKYQLSFEGDSIRQIIVDNDSFWTNEENKKVCKKRIYFVLKTPVVVRNT INFLLGSDKSPAFANRTLDLPCGHTTKRRSSRRVLTENKIFCLEFDKSDLDFGKIHTI VSRLRSRFNVPVEFGRFYDKDYIIPFGRDFPDPIKRETCFGESIYKFNDSPDSKTEQY NSILNSMFEQTPGYDKEAKKARAHLHERKFAYVYLIEALMSR" CDS join(1015033..1016110,1016163..1016293,1016338..1016751, 1016795..1017212,1017259..1017329,1017374..1017655) /gene="CBG04006" /locus_tag="CBG_04006" /standard_name="CBG04006" /product="Protein CBG04006" /note="contains similarity to Interpro domain IPR007855 (RNA-dependent RNA polymerase, eukaryotic-type)" /note="Predicted" /db_xref="GOA:B0K069" /db_xref="InterPro:IPR007855" /db_xref="UniProtKB/TrEMBL:B0K069" /protein_id="CAP24804.3" /translation="MVTKFPTMCAGDIRMYEAVDIPELHHLTDVIVFPQSGPRSQPDE MAGSDLDGDEYAVIWDPILFFQKNAPAFGYCSEKKNKQFTLGEMDHKMNDFFALSMRQ EDVGVTAINHLHQSDQFGIDSDVANSLVEKNAMALDFAKSGDPPLPLTNEGRINPETG LWEPPERSERRPDFSQSRHAGSASYASSRLLGTLHRELRSINDVVMSSSEKQVPVVID DLLIWEGWEKHKDNATLQMIRYNGQLRSIMETFGVATEAEVFSGCFRDIRNRQSEREQ DDMSMYNTESVIEGQMTDLYKKYRKEFFEEFVTPEARMPAYMRLTEPENVRRNYEEVD VLRRVCKQPSDAMMAKAIAYYRVCYENAMKGSDRKLSFAWIAYDILNFVRGKNIMEME NVPVRRLPQFQAIRDHRNAFITDDKNRAKSKYSQFIRRFNSVGKVGESLTQQEIQAKN IILKYVQHNMELQKCLFIIDSWARVKGLICDSDDLTACRNNTQREKLLTSATESSLKW YHLALMIIMVATKKLGTLMDEKQGQSGSKIFEAIHLSDNDLIIKQKLTDADLDRLTIS FFRFLSTREFRRLRVLNFSSIGLKSVFMRGEWLVYHTAATQTYYNILLNLRFDELPTS TESIADKQSIHREGDPILLEIPFETNIEKLLNQLREKSRCVQIDGRFDTRFKKKGYGR IIVLSRGTTEAINELKDFTTIKLPRYLSSQDRSISGELSYLLYFKIMDERFVKTIQGT PSQGNRLRPNNKKGMNKTVRSVPARLNNNRRFREYGAVNRAYGGYDDIYQRHTNTYS" CDS join(1018121..1018234,1018928..1019348,1019397..1019680) /gene="CBG25252" /locus_tag="CBG_25252" /standard_name="CBG25252" /product="Protein CBG25252" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFM2" /protein_id="CAR98702.1" /translation="MDFKSICCALLFAIFLLIAGPVVYYIASHNGTGRHPKQILPVPG ESTLSSTSEPSDLLATSTSSPLSQNIFVDGYMVGGGERVLDTSDADASSQMEKNIKRR HDTNSDSTGSKALPIEEHKKKTLEISDDDAFDNDSTKKHYSHFPKTVKRVELDSSELQ IKSGSTIHDFNNLASEESKSTVDQNLKKTAPRNHFSDSQENNKMEPSKSTESAGKNSK EIHSKEENDDESDIVHHDQSEKSLKKDNSKEDYRYEVEEEVEETKILNKKNHGN" CDS join(1029122..1029263,1031036..1031083,1031130..1031194, 1032450..1032535,1033556..1033706,1033821..1034023, 1034220..1034538,1036664..1036825,1037254..1037454) /gene="Cbr-lim-7" /locus_tag="CBG_04010" /standard_name="CBG04010" /product="Protein CBR-LIM-7" /note="C. briggsae CBR-LIM-7 protein; contains similarity to Pfam domains PF00046 (Homeobox domain) , PF00412 (LIM domain) (2)contains similarity to Interpro domains IPR001781 (Zinc finger, LIM-type), IPR017970 (Homeobox, conserved site), IPR001356 (Homeobox), IPR007087 (Zinc finger, C2H2)" /note="Predicted" /db_xref="GOA:A8WVZ2" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR001781" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="UniProtKB/TrEMBL:A8WVZ2" /protein_id="CAP24805.1" /translation="MAANICMRSAYELFSITSPGTSDLDLGASFWKEEPDSKYLCLDS PVEQRQQQQPMAVCAGCRLEIADRYFLRVHPDMEFHAHCLKCAQCARPLDENQTAFVK DGHTYCKDDYRSIFKTTRCTRCHGEFDKSDLVMRAGDLNVFHLHCFSCVACEKRLQTG EEFQIKNNNVYCRADCQGIERPDRSDSLPDFSKLSNNNNDTNNSSSNFDEDEWDEERS TLTSLDNNTSSPLGSPKSDGVQTPLYGHHNSGSGGSSSSCGKKKKDKQATRVRTVLNE QQLKILKDCYSCNSRPDASLKEKLVEMTGLNARVIRVWFQNKRCKDKKRQIQITESRI NSEREDVLTRVRINGIGPLMVQPPTPHIDTTLGGGPIDIHSFAQWSTTPTPPQFGNPM MFNSPVEMPPYGVTPILPPGSVISTSSEVLGPPGAAIFPHYSPQQQHSSLTASSHPMS SPISSCSD" CDS join(1038770..1038808,1038855..1039388,1039438..1039827) /gene="CBG04011" /locus_tag="CBG_04011" /standard_name="CBG04011" /product="Protein CBG04011" /note="contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WVZ3" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="UniProtKB/TrEMBL:A8WVZ3" /protein_id="CAP24806.1" /translation="MSDEEEDDVNFKAGVEITSGKATYTVVRLLGEGGFGAVYLVKDG KGKQCAMKVERKIEKRKHSKLKMEIAILKLVNGKHFTKIVDRGKKDKEGFFFLVMELV GKSLSDLKSERQDKVFSFATGLGVASQCLEAVEELHKEGFIHRDLKPQNYACGLDDKR HLIYILDFGIARKYLNTKNELKTPRETVGFKGTVRYAPIACHRNIEMAPKDDVESWFY LLIDLILVGSVPWRKLTDKHEVLKMKEECRKDKRSLLYNGIKQTTELNKILDYIDSRA YQDRLDYQFIYKSLSEACTAAGMDIDAPYDWEREKEGTSAEKSK" CDS complement(join(1042304..1042634,1042684..1043115, 1043160..1043387,1043429..1044093,1044266..1044300, 1044345..1044369)) /gene="CBG04012" /locus_tag="CBG_04012" /standard_name="CBG04012" /product="Protein CBG04012" /note="contains similarity to Pfam domains PF00782 (Dual specificity phosphatase, catalytic domain) , PF00102 (Protein-tyrosine phosphatase) contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000340 (Dual specificity phosphatase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WVZ4" /db_xref="InterPro:IPR000242" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="InterPro:IPR016130" /db_xref="InterPro:IPR029021" /db_xref="UniProtKB/TrEMBL:A8WVZ4" /protein_id="CAP24807.2" /translation="MLPKNYPKTSTKRRESQNVPPPPLENVPPIMHQPRDRRNKDTTR SVMQTVEEPPSNQFKRNTNMLPPKTQMLPVNPSQNQYPIPPPAHSPMNNFQQNNYPKE LPAKTMMLPPTPMVPIQAAPQSPARTQMVSVTPMANSTRPSQGFNPYNPPPPLPTPMT PMQQPPQQPPSPYARTPKNTNASVGTLMPVAQLPAITASTPSNLPPPPPTAPAPVYQP SAELFKKSKEKGGTIDEAEASEKAKRKEMINNWIRQVLTNGIEGLKKEYKDAPNGGTI EQAQVFHNNPTRNRYTNIPCCDATRVKLDGDPNFYIHANVVSSAQNRRFICAQAPLAG TVEEFWKMIIFSGLELIVMLCEFVETGKQKSAVYFPAKVGASMKIGKLCTVTKISSES VRFIFSIRDFQLVLQLDKTLTMSTLRITKKDKQDATLTVKHIHWHNWPDHGVPDNFIS PLRLLNLYRASPKPIIVHCSAGVGRTGTLVLIFIILESFSLPDFAGVPRLLAKLREER FKSIQTEMQYLYVHRCVLEYLVYKKYQHSKEDYAKFVKVSSRKFSILKRDWFQHYKAA EKTAA" CDS complement(join(1044920..1045126,1045173..1045319, 1045373..1045576,1045626..1045730,1045780..1046733, 1046791..1046937,1047526..1047941,1047989..1048607, 1048815..1049385,1049441..1049659,1049912..1050011, 1050696..1050850,1053967..1054040)) /gene="Cbr-pgp-2" /locus_tag="CBG_04013" /standard_name="CBG04013" /product="Protein CBR-PGP-2" /note="C. briggsae CBR-PGP-2 protein; contains similarity to Pfam domains PF00664 (ABC transporter transmembrane region) (2), PF09818 (Predicted ATPase of the ABC class) , PF00005 (ABC transporter) (2)contains similarity to Interpro domains IPR019195 (ABC transporter, ATPase, putative), IPR003439 (ABC transporter-like), IPR017871 (ABC transporter, conserved site), IPR001140 (ABC transporter, transmembrane domain), IPR003593 (ATPase, AAA+ type, core)" /note="Predicted" /db_xref="GOA:A8WVZ5" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR011527" /db_xref="InterPro:IPR017871" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR030275" /db_xref="InterPro:IPR036640" /db_xref="InterPro:IPR039421" /db_xref="UniProtKB/TrEMBL:A8WVZ5" /protein_id="CAP24808.2" /translation="MGKDTERTPLLLSSAEFRKSQTSLNSHSSDSSIDESTVKLTNYG LFSYTRGKDLILLIVGTIAAVIHGAGFPLLAIVLGGMTTVFLRAQNSDFVVGVGNVNP NGLEPISIDEFNSEVVKYCIYYLILGVAMFVTSYVQIACFESYAENLVHKLRQNYLKA ILRQQIQWFDKQQTGNLTARLTDDLERVREGLGDKFALLVQMFAAFLAGYGVGFFYSW SMTLVMMGFAPLIVLSGAKMSKSMATRTKVEQETYAVAGAIAEETFSSIRTVHSLNGH KRELDRFWNALENGRKTGIVKYCYMGIGVGFSNLCMYSSYALAFWYGSTLIINDPTFD RGLIFTVSVELESRFFYPEFTNWGNGILGKVVLVVSIFEVFFAVLSGSTSLGGALPHL ASFGTARGAAYTVLRVINSHPKIDPYSLEGLLVDNMKGDISFQNVHFRYPSRKDIPVL KGISLEVKSGEKIALVGSSGCGKSTIVNLLQRFYDPTKGKVSIDGVDLKEINVHSLRE QIGIVSQEPVLFDGTIYENIKMGNEHATHDQVVEACKMANANDFIKRLPDGYGTRVGE KGVQLSGGQKQRIAIARALVKNPKILLLDEATSALDTEAEREVQAALDQAQAGRTTLI VAHRLSTIRNVDKIFVFKAGNIVETGSHEELMNKQGVFYDMTQAQVVRQQQQEAGKDI EDTISESAHSHLSRKSSTRSAISMATSIHQLAEEVEECKAPPTPISKIFNFNRDKIWW FIGGMFGAFIFGSVTPVFALVYAEIFNVYSEPVEQMQSDVYFWCGMFVLMGITFFIGF FISANCLGRCGESLTMKLRFEAFKNLMRQDIAFYDDLRHGTGKLCTRFATDAPNVRYV FTRLPVVLASIVTILGALGIGFYYGWQLALILVVMVPLLVMGGYFEMQMRFGKQIRDT QLLEEAGKVASQAVEHIRTVHSLNRQEQFHFTYCEYLREPFNTNLKHAHTYGAVFAFS QSLIFFMYAVAFYLGSIFVNQHSMQPIDVYRVFFAISFCGQMIGNTTSFIPDVVKARL AASLLFYLIEHPTPIDSLSEAGIVKPITGNISIRNIFFNYPTRKETKVLQGFTIDIKP GQTVALVGHSGCGKSTIMGLLERFYNQDKGMIMIDGDNIRNLNISSLRQQVCIVSQEP TLFDCTIGENICYGTNRNVTYQEIVEAAKMANIHNFILGLPDGYDTHVGEKGTQLSGG QKQRIAIARALVRSPSVLLLDEATSALDTESEKIVQEALDAAKQGRTCLVIAHRLSTI QNSDVIAIVSEGKIVDKGTHDELMRKSEIYQKLCETQRIVESQ" CDS join(1061563..1061620,1061668..1062186,1062237..1062639, 1062684..1063132,1063284..1063434,1063481..1064769, 1064823..1064899,1064983..1065195) /gene="Cbr-noah-1" /locus_tag="CBG_04015" /standard_name="CBG04015" /product="Protein CBR-NOAH-1" /note="C. briggsae CBR-NOAH-1 protein; contains similarity to Pfam domains PF00100 (Zona pellucida-like domain) , PF00024 (PAN domain) (5)contains similarity to Interpro domains IPR003609 (Apple-like), IPR003014 (PAN-1 domain), IPR001507 (Zona pellucida sperm-binding protein)" /note="Predicted" /db_xref="GOA:A8WVZ7" /db_xref="InterPro:IPR001507" /db_xref="InterPro:IPR003609" /db_xref="UniProtKB/TrEMBL:A8WVZ7" /protein_id="CAP24809.2" /translation="MKVFAVVALLAVSALADTLPSVTICPPETQTIFVLQHNSTVGAR IRTIPTSNLAECSDHCAASLDCQGVEFKDGSCAVFRAGSEKATKGSQLLTKSCVKSDR VCQSPFQFDLFEQKILVGFAREVVPAENIQVCMAACLNAFDTFGFECESAMFYPVDQE CILNTEDRLDRPSLFVDEADDTVIYMDNNCAGSQCYPPYITQYIAVEGKQLKNELDRI INVDLDSCQALCTQRLSISSNDFNCKSFMYNNKTRTCILADERSKPLGRADLVATEGF TYFEKKCFASPNTCRNVPSFKRVPQMILVGFAAFVMENVPSVTMCLDQCTNPPPETGE GFVCKSVMYYYNEQECILNSETRESKPELFIPEGEEFLVDYFDITCHLKQEKCPAGQH LKAIRTINAALPEGESELHVLKSSAAKGIKECVAKCFGLAPEKCRSFNYDKKTKSCDL LYLDGHNTLQPQVRQGVDLYDLHCLAALPLVENDCSANKDDALFSRYLHTKQRGIPAK SYKVVSLNSCLEVCAGNPTCAGANYNRRLGDCSLFDAIDEDAEVNEHTDFYKNLCVTK EVDTGASAAANVPETKHRVSGTVVEGKDSKAQLLATKKVKKPTIKNTEHRRAPESTVP LGPPVEVKAEAIQTICNYEGIKVQINNGEPFSGVIFVKNKFDTCRVEVANSNAATLVL GLPKDFGMRPISLDNLDDNETGKNKTKKGEETPLKEEIEEFRQKRQAAEFRDCGLVDL LNGTYKSTVVIQTNNLGIPGLVTSMDQLYEVSCDYSSMLGGRVQAGYNMTVTGPEANL IQPRGKIELGNPVLMQLLNGDGTEQPLVQAKLGDILELRWEIMAMDDELDFFVKNCHA EPGLAGGKAGAGEKLQLIDGGCPTPAVAQKLIPGAIEVKSSAVKTTKMQAFRFDSTAS IRVTCEVEICKGDCEAVECALTGGVKKSFGRKKREVNNNIEEFETNRYLIPRRSHATT SIVIIDPLQQVNEPVAMSRASTLDLLREEAHEVQVIEEGSICLNRITVFAIFGTLAVL ILGQVIVVAHYAVRRFSTEKTA" CDS complement(join(1065797..1065907,1065953..1066047, 1066095..1066272,1066708..1066902,1067010..1067120, 1067168..1067228,1067273..1067642,1067713..1067821)) /gene="Cbr-cdc-7" /locus_tag="CBG_04016" /standard_name="CBG04016" /product="Protein CBR-CDC-7" /note="C. briggsae CBR-CDC-7 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR006058 (2Fe-2S ferredoxin, iron-sulphur binding site), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WVZ8" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="UniProtKB/TrEMBL:A8WVZ8" /protein_id="CAP24810.1" /translation="MTSKSNRIKLWEENCPVLKDSKFLQNYQLYEEIIGEGSFGTVIR AKCRCSQKLRAIKAIRRINKVDMLTIELELLSELGGHFNIVKLYDFFHFNGSVAIVLE YFPHCAATELLYHSKSDDKFALLYIRNLLTAVSYLHQNGYVHRDIKLSNFLYSHKTRS FRLVDFGLATIDRSKNEMSRNAAASAMCREGPCTVCDGFGTPCMFCGKKPKRENVHIV GTPGVRAPEILFGIGLCNPAIDIFSCGIVLLSLVSLKHPFFMPKDETENIYHLAFLLG SESIENMGRLEGLRVTLSEKLPPADYYHLVMSLRHGFQYMRMNFTPKKCQLCHKRSYN NPTGVCFCRENYQTNMFYTGENDKDIMTLYVDLLYRALEPDRFKRYTADQLLCVIESF DRRHNYVPKPLSNRDDD" CDS join(1070906..1071080,1071124..1071320,1071349..1071612, 1071657..1071785) /gene="Cbr-vpr-1" /locus_tag="CBG_04017" /standard_name="CBG04017" /product="Protein CBR-VPR-1" /note="C. briggsae CBR-VPR-1 protein; contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR000535 (Major sperm protein), IPR016763 (Vesicle-associated membrane protein)" /note="Predicted" /db_xref="GOA:A8WVZ9" /db_xref="InterPro:IPR000535" /db_xref="InterPro:IPR008962" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR016763" /db_xref="InterPro:IPR030229" /db_xref="UniProtKB/TrEMBL:A8WVZ9" /protein_id="CAP24811.2" /translation="MSEKHSLLQVSPHRELVFTGPFSDVVTAHMTLKNITANPVCFKV KTTAPKQYCVRPNSGLLKNGESKQITVMLQPLEGIPTDAGRHKFMVQSCVAPAEDLQD LESIWKIVDPAELTYSKLMVTFTTTKRSLSTVTKKHLRLLDKHSKLIHIIFYLKIFAI YRELGSSFSAPSSQQDGTVASLRKSLKSTIDEKEELQKKVHGLEQEIEVMLKKNRKLQ QNQSDGALVEGAFPTLQVVLIAVAALLIGLIFGHLF" CDS join(1072470..1072808,1072857..1073326,1073340..1073520, 1073568..1073759) /gene="CBG04018" /locus_tag="CBG_04018" /standard_name="CBG04018" /product="Protein CBG04018" /note="contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase) , PF00271 (Helicase conserved C-terminal domain) contains similarity to Interpro domains IPR011545 (DNA/RNA helicase, DEAD/DEAH box type, N-terminal), IPR000629 (RNA helicase, ATP-dependent, DEAD-box, conserved site), IPR014001 (DEAD-like helicase), IPR001650 (Helicase, C-terminal)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WW00" /db_xref="InterPro:IPR000629" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR014014" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8WW00" /protein_id="CAP24812.1" /translation="MSDGKKQEKSDMASVEFESSEEVNVVPTFDKMGLREELLRGIYA YGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILS PTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMI RRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMT SKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTSSSFLKVDWLT DKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLISTDVWARGLDVPQVSLVINY DLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQYYSTQIDEMPMNIADI I" CDS join(1076090..1076317,1076407..1076557,1076694..1076925, 1077780..1078497,1078848..1078958,1079547..1079662, 1079888..1080232,1080284..1080448,1080782..1081217) /gene="Cbr-hpo-3" /locus_tag="CBG_04019" /standard_name="CBG04019" /product="Protein CBR-HPO-3" /note="C. briggsae CBR-HPO-3 protein; contains similarity to Pfam domain PF04114 Gaa1-like, GPI transamidase component contains similarity to Interpro domain IPR007246 (Gaa1-like, GPI transamidase component)" /note="Predicted" /db_xref="GOA:A8WW01" /db_xref="InterPro:IPR007246" /db_xref="UniProtKB/TrEMBL:A8WW01" /protein_id="CAP24813.2" /translation="MTVFIKTKTNCCGRSWCVRDPCGIMCAVVTWLLIAYGQVCVFLV LIYSWDQYPIHTFLNFVLFEFFSALAVTSHLKTMMTDPGAVAKGDCTEETVERMQLLN GHTTIYKCQKCSSIKPDRAHHCSVYVYCPTINACSLLGIWQFVLCVGAEWQKCSSLTP PATTLLLIFLLFESILFAIFTAVMFGTQISSICNDETTIESMRRISEHSLMPGLVTPK FDKSGIAIQLYRSLTSLPKSKSQQEFVMDVFSEFGLQCFTQKWKSTIAGYPKRGENVY GFVRGQRNDGAEAQLIVVQLGKSESARRMITRMLSFVDYAKDQVYWARDFVFAFVDGG NGPDSIEQAAFALDAFLFKYQKIESLSSKTRRNATVIADEIQTQTGALIAGVVYDLSG ISVKGQHIINIQTNGLNGQQVNLDVFNGIVKIADSKHHSKVAIFGTLHRHTNSYMEYS PFTVPIKALMTQAFVSIEGIHSVMGKYGVQGLTVGLSHDYTERQSVQFVEEVSRMLNN VLERLHQSYFMYVLADDMHFLSIGFYLLPSFILICPLLISAYNEWLKVDSNSEIPLAV IGIHLGGYAIYLMTQWIFTNIGEVFAFSTEFPFVGPDGCKGQLTGSMDIVIIYLAVTM LPLGLYLFSIHPIRPTSIPIMRIFILLEVSITILCLSLINFGLGVFTAAIVVPITFLM TFESPQKARSLYRSGVLALLHPIAIITILAWYTPGYSTAFIPKKEFDTWTGVPRVFIR NMIKNDAAFGSWHFYLITIIGWPIWNMIFSCSLPYDLDVDRVAAKAREAREAREARES GEEATTPEDPHPPQSVPIARPTTSNISKRNKRKNH" CDS join(1084834..1084914,1085145..1085245,1085349..1085436) /gene="CBG04021" /locus_tag="CBG_04021" /standard_name="CBG04021" /product="Protein CBG04021" /note="Predicted" /db_xref="GOA:A8WW04" /db_xref="UniProtKB/TrEMBL:A8WW04" /protein_id="CAP24815.1" /translation="MSRNFALFVLFAILLCSFSTAIPLRSLFLRSYDDINQESIPKQY FEPQERAANFVENGDNRAKRGLDLLKRRVEIIERNRCFFNPITCY" tRNA 1085024..1085095 /gene="CBG29043" /locus_tag="CBG_29043" /standard_name="CBG29043" /product="RNA transcript CBG29043" /note="C. briggsae predicted tRNA" CDS complement(join(1085625..1086166,1086362..1086521, 1086569..1086712)) /gene="Cbr-col-54" /locus_tag="CBG_04022" /standard_name="CBG04022" /product="Protein CBR-COL-54" /note="C. briggsae CBR-COL-54 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)" /note="Predicted" /db_xref="GOA:A8WW05" /db_xref="InterPro:IPR002486" /db_xref="InterPro:IPR008160" /db_xref="UniProtKB/TrEMBL:A8WW05" /protein_id="CAP24816.1" /translation="MSTTSTVLLFITSICGVVIVSSLLVAGSLFFDAQSFLETSLDDM ESFKHYSDVAWKDMISSNTFDRKKRDEEDKSCGCPCAKGPNHCPPGETGPPGPPGLPG ADGEAGNPGKDGNAGFSLVFEDEKLPCIKCPAGEPGAPGPDGEPGAPGPVGQPGAPGP AGNPGAPGEAGPEGEPGDAGAPGEAGASGADGKNGSRGAGLPGPAGPEGPAGEPGKDG QEGVHGEVGADGSEGIQGAPGKDGEKGTDGVAGQDGAPGAPGPDAAYCSCPERTKIVF ASESP" CDS complement(join(1087189..1087305,1087882..1088045, 1088319..1088526)) /gene="Cbr-ceh-12" /locus_tag="CBG_04023" /standard_name="CBG04023" /product="Protein CBR-CEH-12" /note="C. briggsae CBR-CEH-12 protein; contains similarity to Pfam domain PF00046 Homeobox domain contains similarity to Interpro domains IPR020003 (ATPase, alpha/beta subunit, nucleotide-binding domain, active site), IPR020479 (Homeobox, eukaryotic), IPR000047 (Helix-turn-helix motif), IPR017970 (Homeobox, conserved site), IPR001356 (Homeobox)" /note="Predicted" /db_xref="GOA:A8WW06" /db_xref="InterPro:IPR000047" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="InterPro:IPR020479" /db_xref="UniProtKB/TrEMBL:A8WW06" /protein_id="CAP24817.2" /translation="MFSSIDSLLKSSSPSPPAPPLDEQKSASDHQFFNYSTSCSEELM KMAAKAAHIASQTSSCIENSFPLPQYSVNAWQAWGKMRRPRTAFSSEQLVQLEKQFSD NRYLSRPRRYQLAQQLSLSETQIKIWFQNRRMKNKRCPSSTPTPSSSSQTSSSTSSTS CQ" tRNA 1088222..1088298 /gene="CBG28366" /locus_tag="CBG_28366" /standard_name="CBG28366" /product="RNA transcript CBG28366" /note="C. briggsae predicted tRNA" CDS complement(join(1088980..1089585,1089634..1089702, 1089747..1089839)) /gene="Cbr-rmd-6" /locus_tag="CBG_04024" /standard_name="CBG04024" /product="Protein CBR-RMD-6" /note="C. briggsae CBR-RMD-6 protein ;" /note="Predicted" /db_xref="InterPro:IPR011990" /db_xref="UniProtKB/TrEMBL:A8WW07" /protein_id="CAP24818.2" /translation="MPTDVILLQYLTISVLLLLPRVNKSPTQTTMSFDEIDKTFGTKN RDQGYDMLKARLDKGDRSVEVLWRLAQVIHERSACMPKAQRKAAINDGLKFSEEAVQK DSNHFKALKWNAVLIGQATEYMPTKEKLECSKKFKELLDKSLAKEPKDTALLHLRGRY KFSVASLTWLEKKLASTFYQQPPSHSYEEANEDFLAAYKVNPKWMENLFFIAKCYVAL KDKNNARKYLTELCDIEPYSDAEQEFLDDAKAMLSKL" CDS join(1092858..1092998,1093093..1093356,1093401..1093541, 1093573..1094117,1094163..1094255,1094300..1094640, 1094690..1095492) /gene="Cbr-tyr-4" /locus_tag="CBG_04025" /standard_name="CBG04025" /product="Protein CBR-TYR-4" /note="C. briggsae CBR-TYR-4 protein; contains similarity to Pfam domains PF00264 (Common central domain of tyrosinase) , PF01549 (ShK domain-like) (4)contains similarity to Interpro domains IPR002227 (Tyrosinase), IPR003582 (Metridin-like ShK toxin)" /note="Predicted" /db_xref="GOA:A8WW09" /db_xref="InterPro:IPR002227" /db_xref="InterPro:IPR003582" /db_xref="InterPro:IPR008922" /db_xref="InterPro:IPR015559" /db_xref="UniProtKB/TrEMBL:A8WW09" /protein_id="CAP24819.2" /translation="MRSLIPLTLLIFLLSSLLAQEDPCASAPTATAKILCRQIHKWDD GAREASKKKKIALPPGLAKGMAAEFAPIASNIYQCMDLPCLCSYLRGTATGNGGCTLP NGQPLQKSVRKEYRMLTDDERNRLHAAFRALKNNGEYDRIGRIHSQMSAAGGAHSGPA FLPWHREFVKRVEFALRQVDPSILDFQDQQTLSCSGNFSNSHNTMKILYSEYLVGGTG LVSNGPFTNWRTLAGRAQIQRAVGAQGAPLSQADIDFVMRQTQIDQVLSFTAPQQGCP YRTDFNCLEYTHGNVHIFVGGDMFDTATSSNDPSFFLHHSFIDFVWEMWRLARQSRAD REIAFPPDNQLCASPQHFGASPMQPFSPMRNIDGLSNKFTDNLYSYAPRPTCQAGGDC GSKFLFCDTSTGVARCVSRIRHGSQCGQFRVNPCFSGVCQNGVCVLSATAPRPTPAPV TPPPANPNPVQSQESCFNENQCCASWAASGECSRNTAYMNEWCKASCGVCKPKYRLAD DCTDRHTQCASWSRSGECTKNALWMTENCRKSCNKCGRSRAQECGGGGNTVTTTTPSP AQQCDNSDGCYNENVCCAVWGLMGECRKNTGYMACNCRVSCGHCFPEDYNYGCTFFIS FKTYTFRISACVDYHRSCAGWARVGECQKNPWMAENCRSSCNSCYTQSELRRMCGTTA GSVAPVAQVRQNNPSRQPPRGGWGRNDDFGGGGWGGNGGGWGGGDPWGGSRWGSGGGG WGGGGGGWGGGGWGKRSIRAANASIAMPAFDPDLL" CDS complement(join(1095754..1095987,1096036..1096465, 1096513..1096757,1096804..1097001,1097049..1097240, 1097289..1097399,1097718..1097723)) /gene="Cbr-stam-1" /locus_tag="CBG_04026" /standard_name="CBG04026" /product="Protein CBR-STAM-1" /note="C. briggsae CBR-STAM-1 protein; contains similarity to Pfam domains PF07653 (Variant SH3 domain) , PF00018 (SH3 domain) , PF00790 (VHS domain) contains similarity to Interpro domains IPR002014 (VHS), IPR018205 (VHS subgroup), IPR001452 (Src homology-3 domain), IPR000108 (Neutrophil cytosol factor 2 p67phox), IPR011511 (Variant SH3)" /note="Predicted" /db_xref="GOA:A8WW10" /db_xref="InterPro:IPR001452" /db_xref="InterPro:IPR002014" /db_xref="InterPro:IPR003903" /db_xref="InterPro:IPR008942" /db_xref="InterPro:IPR036028" /db_xref="UniProtKB/TrEMBL:A8WW10" /protein_id="CAP24820.2" /translation="MKKLNRTFPMSAYEDLLTKVTAPTLTTENWEGILGFCDMINKDY EGQKTGLKALRKRLNNRDPHVVLLAVSVLDSCWANCQERFRKEVSSAQFINELKALCT SSQRQVAEKMRLTLQKWVDAECKNEPSLSLIVSLYKNLVADGYSFTVDDPKSKKKAID AKYANDPNYVGSAQEEEDIAKAIAASLADAEKQVKKSTSSSMYPLTKSTSPPTQSTPN SERKVRALYDFEAAEGNELSFVAGDIITITDESNPHWWTGRIGTQQGLFPSSFVTNQL DDTKSKDAEASQKTPEVVASINEAVLVRCLQVLHECDPTGERPDPADLAQLEAASYAQ GSLIDAHLASIDRQSNSLAQIDIAIRDVLALYDDAVQKSGFQPNQQMYQQQMQQYNYQ QPQAPYYPPAGQPPQQHQYPQHYNPAVQQQQQPQQQQQQQHQYGYPQNVAPAQQVPHP QHPQQPQQQQQWAPAPQSQQY" CDS join(1098879..1098912,1098956..1099107,1099197..1099509, 1099557..1099858,1099902..1100853,1100903..1101094, 1101142..1101958,1102010..1102112,1102236..1102463, 1102584..1102700,1102762..1103447,1103492..1104764, 1104814..1105071) /gene="Cbr-hpo-27" /locus_tag="CBG_04027" /standard_name="CBG04027" /product="Protein CBR-HPO-27" /note="C. briggsae CBR-HPO-27 protein ;" /note="Predicted" /db_xref="InterPro:IPR011989" /db_xref="InterPro:IPR016024" /db_xref="UniProtKB/TrEMBL:A8WW12" /protein_id="CAP24821.2" /translation="MAATTQVSSLLDLVISLLDTAITYQSQESVKNEVAESLKTIGAH QPNVLLTACHQYLLQNPKLGTFKRAFVLQSISICVDNTEVLPKLDEQLVMLIINLATQ EMNMTKDTDVEWAESAMEVLVTLAKNQRFVCHVIDAILQKFPPGQTTSPHRYIVLTMA TIANHNPFGLVPFLTDILSRTVPLLQHVKTDPLRCAWARAICSFCEAVRECETERPKE ASEEFNGEHSRPNSAFGHCQEVSNRATYSDQTEAVYDVVFGWIYSKDPKTRGEAAECV GELCLMIKQTRLVEDVKKIVTNMLPLYRKSYNESHMITQGICRFLEAACVDEVCPLEP YLEDILNALFPNACLDPDDTTVTLGTQAIKNHSEAFRCFDVAATRFADRIVYYLLHKM QNVADSQKLGAINVLRHLLNATGQHMEDKRSLLTMGLKKLLAAENTTSIRVSFFAFIT IILITIKSQVKRAIVQLCVALADHSYVDAEGGDYVIAFLVRNLVGPTEQEAAAKKIEI DVAGLNQLRTQCAQALYTIANTCVCATKLLWPYLLEFLCCERYTPVVGDLCKCLRTLV NREAEAGRKMDYTTGFDNPKVAGRHAVLARLFTSFCNAPLNGLLTRRAREVGGLIEAI APWFHSSMEGPASRWSAKLEPLLDELSITAVSSGDSAPAELRGRKIARWHEACLDWLS VFVSSVPEGDWRQDLAAAMGKQLDMYKDLSDEKSFLFRCIGVTLSKITAKQFVIDHMM MMFKNASHSILSERQGCARAVGSISSSHMDLVLVELENVSKWEHARKSSGIFGFIKDT MPIRQYPDIEMINLRATLMLCYGHVVMACSLDTVTQRLQNTIMVFLRNYFANSKQETV VREAMLETMRLIATAVHPSRIGGEWKFDARNELLAYAKDYLNGETPEWLTSSLRLLTC KATAALVQLEPPLSATDIEDIGNVLSRQILPMQREKSGLKTLAFDIFDYASSSVLSTF SGGHNNNIHTGPPLTTNSVAEGPNGTTIHHKHRGVNGKVLKRSWLIECYYNIRLKVSV SMEDDESATIMDATMHQYGLALEQIVRMAPTTQTVMILLKILLPYYGKQADHERIRAV DMTVLVLRVYYECAEDISLGHASDFEPLSSLLGRLAPRLVDLLAHVRLQALSAIHWAL RLAYMHKGHGRDADQSLFSYSNFVEKYLTSGDVKLDGQKEKLAIEAIAQIIEYRLPQS QMQIYLSAIFEMLTDRQSHVSSAAAQLLTYAVMARGSTLSSEAEILVTKMVEKLADIH HCVQTNTDVLAALVAFAVHQQQAVCDVLFKQPLPYSINITDAWECLSRDKLLFAGILD HLTELLGASLDQPFEIMDSGGGVSAKVVNVEPCTYVAVLAEVVKNGEPESALMERVPI ILTLLIHFICSVSDTQFPVMQKESKDGVKSPLIITPDLRRSAEKPAGMAVAAIKNLLN RTRSNMVIEDMNQARAWSDCLDKEAFIHAIGVLIRSLIDQRPAWVPSLAKTMEEFANS ESEPRRLAAVIIASSLIRKSTNESGEFNEQLLVKCIRRLEDSLTDPSLRIRKLCVKGL GELSECSSSDVISRFVHMAVEAAMSGLDDHGDRKDTVAIESILALNKLVQLTNNDQLK SILPIVLLKVRPCFEKDSYELRAASFSLFGELGARVGENSEEFRGHLHTNIVSLLLHL NDDYEEVRQKCAVSIYRLHELLTSPNASICIEREMKDGKQPYNYNSFIKDFAAILANS FPDRVNQYALATSNYFKSSSARIRCNAAHLTGCLLDGLTAQLRATISRELVFTGLVAL LKDSEDVNVRIAATRAIANLHDFH" CDS join(1105710..1106158,1106825..1107512,1107557..1107814, 1107858..1108046,1108068..1108337,1108383..1108637, 1108890..1109048,1109095..1109334,1109382..1109729, 1109750..1109944,1109994..1110158,1110205..1110456, 1110505..1110607,1110652..1110761,1110817..1111002, 1111062..1111124,1111157..1111573,1111622..1112539, 1112559..1113083,1113126..1113797,1113845..1114099, 1114405..1117972,1118019..1118104) /gene="CBG04028" /locus_tag="CBG_04028" /standard_name="CBG04028" /product="Protein CBG04028" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WW13" /protein_id="CAP24822.2" /translation="MGFKSLTLLGLISLVALTGAKLRWKCELFDTSQETSTRTTFVEF VKGEEPKVPVVPNGPNPRPPRSPKCRPRPKNGTVGPSTGTEKLTIEKSKSLIQSDVPG VLASGDTDLPHVKYQRKETHQSLDLNIGPGFEESNDPYGRSKQPVPKLFRPAHLKGAD ELDKPLTEHLDENVMPDFELDDDESPPIEQDLPWCPEETDDDCETVDLEKLSVSELIE LKQRCETTVSAKRQELIEKLIKTERGQPEVPKPGQFVVSPPTGNINCTTSPSKLKETD LEKYRKECPCEEDHSKMSEEEFAIFKKECLDPIEIPGTPHNLVRKNGRCGSSQTKINE MREQEYKLFVKECLVNPNIDLKKIIIIKPGPDCKDVDVKGMGKIELGKYQKKCLTTRN CDDMDTSSMDEKELTRFKKMCSPVIRKTNNLCEEENVDALDDVAFEKYKIECILGETP FDCDSVDPKTLSDRELRMYLKECPDPRSPPPVNSRMNCKNVNPDELSNAEYKKYERDC LEKSAGECARIDPQTLNDQELNRNVFQYKKYEEECLNKESNCTLADPREMTDEQYTRY ERACLKKSTDCKDINVKDLTEVQYRKFRRDCLRENPEFDCSSKNVDEMSEKEYSRYRK ECLENQRDFNCNDVQPKKLTQKQLKRYMRECVRESSDCQDQNVKEMSETDYEEYVKKC LKEDSKIDCSNVNPNQLTGDELRKYQRECERFDCNVNLNDLSEAEYKKYLKHFREDNP SLDCLNINPDDLKGEELERYNDECLSGIDCQVAKPEKMSTKEYKMFMRHCVKNTLDCT SVNVKDLSNTDYEKFRTDCLKIESDCLNIDTSKLNDNEYKQYKKECLDAERDVNCDSV NPNKLTREQYQLYEKKCLERISSENCVSINPNELSDDDYEKYRKDCLKPRARFDCKTV NVQKLSDKEYKKYEQECLDRPRNSDCDSVRPDELNEKEIGKLINFQYAKYQRECLGTG KPAGCRNVNPDNLSREEYRKYEKECLPSSSPDCDGVVVDNLNDEEFARYKKRCSSRVP RPPGESVDITKIVRFNESSSIPPGVTAEACQNADVEKMTNYQYNQYKKYCQVNFEGTD CDEVRVDKLSEEKLQEYVAKCGLFCGIERKEALSKKYQRIYEERCEGDSNELEKDCKD IAIEKLGERMYADFAEKCLEPINACSMLKSRRLVRKVYNEYRLRSDTEKMTLEEYKDY KRRCGKGRKDCDDVNVEELSDQEFIRYKKQCLLDTMNEDCKDINVDELAKEEYRRYLK KCGRLLPSEVTDGDCGSVEVMELTDNEDNDQVLDERCPKMAPESGQQEFREYMKRCPD HSSDSIQKCNTLDWRAMSRKEYLDFLKVCPPEKSSDRMTPPGGESSKNCSGMDVEKMT EEEFEQYRKNCISIRRTTNSDCDDVDVNALSDEEYRMYERRCGTPRGPDYPDSPNRHN CTGVNIEELTSKEFRAYKKRCLTIRKTPDCSAKDTSQLSDEEYEVYRKKCSSGEHPEK PRDGCSSVNVSELSDEEYRDYKKKCLERSTSKPDCDYVNVNNLSDEEYRLYRKNCGSS GGPVEIEKSIEIVPPRRNGEDTPELERTPEDRFPEIPSVTIEKTVVVNLSKPPQGPDS NDCTSINPNELSDSEYEDYRRRCLERKIPKPDCDDIDVNKLSDEEYLVYKNRCGEESP ESPRKPSVTVEKTVKIVNTPPNDGSSPPTSPNIDDCSNVNVAKLTDDEYDEYRRKCMS IRKIVQPECSDINIEELDKEEVGLKFVDVYLAYKKRCGPPDSPRSSNDCSDVRVEELT HEEYALYKKKCLKGKPPRRPVTPDENCRNVNINELSESEYRAFKRRCAENVTVEKIVV VGKECNRNTDEMTKEEYQKYLKECPQKPQIELTKTITIVPRDEDDCSKIDVNSLTDEE FVFYQKKCGDYKNTFQFNCNQDVTKMSDGEFEKFRKACGKKPFDCESTDVDSLSDRDY ARFLKECGKRPIYNCKNAKVERMSSDEYDEYKRKCKKVTTKIHTDCDQVKVETLSRKE VIVERLNLLHSNLFFLFQYAEFKERCLKNIPKRPTTTIRKRVDCSIVDESMMTDEEYA DFKQNCNVKVTTDRYRPGENMILTKKVEIRTGKEKFSCYDQDVDQMSDEEYATFEKKC LANPHFRFDCSTVDTTNLSREEYAKYQRECPTRPEKTILIKTLIVNGSNEVVKNGCYN RDVDGMSNEEYADYEVRCLGREPVPLPQLERKTSFDCHNVDLSKLSYPEIEEHIKRCR TRETASTPPPPRRQSLKCSDVKTDDLNLNDKAYAKWVKECLPTPDLKLKKKIIIPPTP EEPRLSGGETVRVEKIEIYEHLRPDDDEGYWKGNEDFGVRVLTGIKKMVITGRPDEDS ESEAGVILVKKVIHKIPGRRRPFDVDNGIDEGGVIEVKRMIMKTTQPEPDVDESEEFE EILRRPRKIVGPKEEVALLSVTKRHPHSYGTKHRPEEEEPTEVVKLTKNTKHPNATIR EVRIRKHFGTGVPAEETVVQEIGGLDFKITRKTVMKPRKVRKLKSTTTTTTTPAEPEY YYDEEEVPEYITLVRVEKSSRPLRKTRRPEDEDDEYVDVKEDKPKSYIEFEGFVKVHA GSRKLRKKTKFTDSGEEPAIREVTRTVVPGTEDDDFKGVKVRSPRKRVILIRKIAVEV PDDVEHEVTVVKKLKVLKFGNEEVENFNDDDGNVEDDGKIIVRNRKRKYWFEDGRERP GEDDENEEYVEGRIAVKGRAPKAFRWTNRPVKKGSDGPTVTERTSQFYKIGGSEEDDE ERRRRRRKEELRPRALEEEEEDGIIRRRRPDDEDGRRPRPRFEEESEEFRQRKRLRPG FEEEIEEEGKRKRNPGGLNEDVIIKKLYRLGQKTPFEENDGEPIVLTRKKIIKNQPND MNEEEPDESGEIKLHNRRKLYRIPAGGGRPNGDDDQEIVKIKKKTVHRIGPNGEREYV DEDVPTGGSDTGEDEEIKLLKRRKFYRIRPDGKRELTRTEGVEPSDGEEVTVSKNKVH RIGPDGKRELVSEDEPGRKHSSVTNDQPEDDSEQVTLKKKIKRRYRVGPDGKRELIGT EGEGDIDRMSHGEESDLKMKRKSFSSQSDDQPDDEMNEERVMMKKKKFYRIGPDGKRE LVREEEVPSGGMLHQKTSGLLGGNKNTYSPEPLNDESDDGEVRIKKRRFYKIGPDGKR ELVREEGGDVDGSESSNGNGEERKIIHKKRRFYKIGPDGKRELVREEEGGDGGNMDNK TSKKSSVPNDQSNADIKMGAPLSDDVKPLPGKNTNVVFSQRGFFKGGHMLVPRESEEK ENEKNKRMSADNDDDDDDKYTYEMKPRVKRTYVLDGHGRRKLVDETTGDGEFNSSFIN IKHDLFSEKSNVDLGKLLKPRRRITETETVDKEHVSVIIELNSKLNVFQHESRYQKVG STRKTRASSEPSSSGTSPKTMNGKMQKYHKDKNLRSGGKSEEDIPEEQ" CDS complement(join(1118238..1118578,1118648..1118846, 1118895..1119002,1119055..1119213)) /gene="CBG04029" /locus_tag="CBG_04029" /standard_name="CBG04029" /product="Protein CBG04029" /note="contains similarity to Pfam domain PF03029 Conserved hypothetical ATP binding protein contains similarity to Interpro domain IPR004130 (Uncharacterised protein family, ATP binding)" /note="Predicted" /db_xref="GOA:A8WW14" /db_xref="InterPro:IPR004130" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR030231" /db_xref="UniProtKB/TrEMBL:A8WW14" /protein_id="CAP24823.1" /translation="MYGVLVIGAPGAGKSTFCAGLTDIFTQIGRPFCTINLDPANDTM AYAPDVNITEMITVTDVMDRLSLGPNGALKYCIETLGDNSDWLLQKIEANSKKYMIID CPGQLELYKSEGELWKVIRHLEKAGVRLCALHLADSLYCSDPSKFISVALSTLATMIA MEMPQVNCLSKADLFSPDGTYDLDFFSYLPDVNRLLDLLNEVPGLERYRRLNEAICGI ITDFDLVSFVPLAVESKESMMKVIQLVDTANGFSLTEQGDLRELILNSKT" CDS join(1119623..1119681,1119727..1119835,1119883..1120250, 1120296..1120569,1120620..1120718) /gene="Cbr-air-2" /locus_tag="CBG_04030" /standard_name="CBG04030" /product="Protein CBR-AIR-2" /note="C. briggsae CBR-AIR-2 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:Q61XD3" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR030616" /db_xref="UniProtKB/Swiss-Prot:Q61XD3" /protein_id="CAP24824.3" /translation="MENKPQILQTKSKNTPNKGGKLSINDFEIGRPLGKGKFGSVYLA RTKTGHFHCAIKVLFKSQLISGGVEHQLEREIEIQSHLQHPNIIRLYNYFWDAKKIYL ILEYAPGGEMYKQLTTQKRFTEAMAGKYMYEIADALSYCHRKNVIHRDIKPENLLIGA QGELKIGDFGWSVHAPSNKRQTMCGTMDYLPPEMVNGNSHSDAVDLWAIGVLCYEFLV GKPPFEHENQADTYSAIKAGRFTYPDFVKKGARDLIGKLLVVDPRRRCSLQEVKDHYW VTSMLDSCRRAAEKQKAERAASLRDH" assembly_gap 1121218..1121620 /estimated_length=403 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(1125654..1125718,1125767..1125853,1125958..1126080, 1126185..1126493,1126537..1126665,1126830..1126959, 1127008..1127206,1127257..1127375,1127420..1127485) /gene="Cbr-gpa-14" /locus_tag="CBG_04031" /standard_name="CBG04031" /product="Protein CBR-GPA-14" /note="C. briggsae CBR-GPA-14 protein; contains similarity to Pfam domains PF00025 (ADP-ribosylation factor family) , PF00503 (G-protein alpha subunit) contains similarity to Interpro domains IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR006689 (Small GTPase superfamily, ARF/SAR type)" /note="Predicted" /db_xref="GOA:Q4VT38" /db_xref="InterPro:IPR001019" /db_xref="InterPro:IPR011025" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/Swiss-Prot:Q4VT38" /protein_id="CAP24825.3" /translation="MFSCFNNLGLDYCYQCMHGPEGCMVPSRQGDGGELYAHSEELEA KLRGLAKKESLEIEKSLENDKKTYGSHIKILILGGPSSGKSTIFKQMQIIHSNGFKTE QELIQYRGLIDTNIRQTYRQLVSGARVVGISLESLESLVHDINKVYAPMAADEFSIRT IPDVVEPLTAFWNSREIQEVYKRRYEFELLDSTKYYLENLNRISKSDYLPNEEDIVHS RKATVSINSIVFQYTGVSLLMVDVGGQRSERKKWLHLFDDAKVVIFVIDLTGYAKKSE ESRTELSRFPNFFNEIGNDAFDMKVALKIFNDVAGSHALANAVFLLFFNKVDLFKELL PQVSLQPCFSKFAEENSYDNTSKFICDKFIRAAKPKKSVFPHFTTATNTENIKMVFRA CMESVFKANSKATGLS" CDS complement(join(1128010..1128044,1128105..1128136, 1128187..1128465,1128515..1128636,1128681..1128848, 1128896..1129153,1129545..1129796)) /gene="CBG04032" /locus_tag="CBG_04032" /standard_name="CBG04032" /product="Protein CBG04032" /note="contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase, ATP binding site), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain)" /note="Predicted" /db_xref="GOA:A8WW17" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="UniProtKB/TrEMBL:A8WW17" /protein_id="CAP24826.1" /translation="MSSSSSCAKPEFRIGESVSGFEVIKKIGSGGFGAVYKVQKDGIE FALKTEFIDDESDDTLKNEVHMLRLMQWSPSFCRLYTAKRLPWQNQKVNIMVMTLCTR PVSRLRRMMPDRHFTKSTAARLSLQLLEALRDLHISGIIHRDVKASNCGWHAPTRRIL LFDLGFSRKYLEIDPITTKMRHRAARKDPGFMGTSKYCSVFAHDENEQGRRDDLWAWL YSTVEFFLGTLPWSDEEKSVRVSNMKKKVGRKLFFKCPREFALMYEHIRQLKYDSSPD YQMMTNLFKQMFIRLDIEDSDPLDFEQGSIFYDEYFVSQTDSEKELNSDLGTSDELES HHNKRSEVVTIGSKTDSSETENKLGRLAAGFNRAINRNRVEQFENDR" CDS join(1138410..1138533,1138585..1138673,1138745..1138939, 1138984..1139070,1139400..1139492,1141020..1141067) /gene="CBG04034" /locus_tag="CBG_04034" /standard_name="CBG04034" /product="Protein CBG04034" /note="Predicted" /db_xref="GOA:A8WW18" /db_xref="UniProtKB/TrEMBL:A8WW18" /protein_id="CAP24827.2" /translation="MFYACLAIMILFVIMCSCITMAIIDLEMYNFGLYIVLLCIVGTM LACALCIANPGACANPMWYTNFCLLLHDYMQEMYPVHPDGTSSPKMTGLRAQMQRHAA QSMATSEDGTRLTVRQESRATVAMLAPAVHIMHQVWKGMAWVTDGIEEEDEDTRMSMY DKMEQGTSDETRSVSDHALKRLSTIAETSSYILRELEEPSSEINSRNDVTL" CDS complement(join(1141191..1141379,1141429..1141506, 1141554..1141655,1141700..1141750)) /gene="CBG04035" /locus_tag="CBG_04035" /standard_name="CBG04035" /product="Protein CBG04035" /note="Predicted" /db_xref="GOA:A8WW19" /db_xref="UniProtKB/TrEMBL:A8WW19" /protein_id="CAP24828.1" /translation="MADKNNTAACFRDLVVLKNISNEFILLYATAGGNVLLLILNSTI LFAVLGYMKPVISEIRKQTFIIIDNILRSYIPAEIREVVGCKPEVTLDGGEEKKEKKT AGKAKKRPSKPSKTSKTSTGKTGASIATTGGTAAASE" CDS 1142327..1142977 /gene="CBG04036" /locus_tag="CBG_04036" /standard_name="CBG04036" /product="Protein CBG04036" /note="Predicted" /db_xref="GOA:A8WW20" /db_xref="UniProtKB/TrEMBL:A8WW20" /protein_id="CAP24829.2" /translation="MNVSFCLQKNRENGRKTKVGSKKPKFRKTLEEALLLYFQKVRSV QKIRIFNLIFTGYQKISIFQYVDWALQKNATENEEGKSSGTVGKFENECQRKSRFQTE VLSSRISKKIPVDNLCQRHTCKIPSRPAKARARAGPEEIFKARARPGRPGVKNSVFLS QILSSQYNFFHFFSYFGLFVCLIKKDRKNSKKNFLVEKNHIRFPLMCFLKISKLVK" tRNA 1143494..1143565 /gene="CBG28188" /locus_tag="CBG_28188" /standard_name="CBG28188" /product="RNA transcript CBG28188" /note="C. briggsae predicted tRNA" CDS complement(join(1143605..1143780,1143857..1143920)) /gene="CBG04037" /locus_tag="CBG_04037" /standard_name="CBG04037" /product="Protein CBG04037" /note="Predicted" /db_xref="GOA:A8WW21" /db_xref="UniProtKB/TrEMBL:A8WW21" /protein_id="CAP24830.2" /translation="MNSSEENQFIGNAGTLKSNKEELRLHLSESDDSFSNRNIIRRAK LMNSSHFVCIVMTATLLVTVCGIVLLVQIIERSRQ" assembly_gap 1144905..1144914 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1147064..1147132,1147182..1147467, 1147517..1147621,1147669..1148009,1149601..1149651)) /gene="CBG04039" /locus_tag="CBG_04039" /standard_name="CBG04039" /product="Protein CBG04039" /note="Predicted" /db_xref="InterPro:IPR036860" /db_xref="UniProtKB/TrEMBL:A8WW22" /protein_id="CAP24831.2" /translation="MEGDTTKTPYNTIYATLKNKKTDGEVLCCVHGSKCVYNKQHDGK SNENQYVNLGSPKKEEQVASKLTEKLKKLVEIEEKKSETRSKPELMSLHNFMTFDEKP KKAKSEKRKKKIPSFVNDSESYIMLGPKSEEQIAPAISANQSSTAPPPQSNDISIIEQ SNNTFKIGEASSAYIGVLTLTEAENRLTNRGEFALYHLSNPDGRLDTLTEKLPLILVY RTTTKKNRHYSIRTTLDQHFFVDCGYPNVRKHYSLNQLVMFYKTSATCEINPDDTSAD SFSWWLE" CDS join(1151808..1152038,1152087..1152266,1152314..1152409, 1152458..1152553,1153697..1153775,1153984..1154225) /gene="CBG04040" /locus_tag="CBG_04040" /standard_name="CBG04040" /product="Protein CBG04040" /note="contains similarity to Pfam domain PF06681 Protein of unknown function (DUF1182) contains similarity to Interpro domain IPR010601 (Protein of unknown function DUF1182)" /note="Predicted" /db_xref="GOA:A8WW23" /db_xref="InterPro:IPR010601" /db_xref="UniProtKB/TrEMBL:A8WW23" /protein_id="CAP24832.2" /translation="METSYPSSTLPSTSSSPLTFYNSLPPSNYTLFDLTVTPMSYRDR ITVEFILNISSWLLSTFLVIFVRLKKAIWVSLKSTIVFVTVGSFLLNIPLILFQAWMV FNLQFGHEPVYSVLVCSFFKNFCSSTTSAYQVLPFAVSLYRYRTVVLKGHPSPSFVIN VHSLVTFIFIIYAFLNYPLGQNNTNDVCYILRFSNGMELVRIFSTLLFNFAAIIVNCV ILRFVKHFERIPMPASFGSTWYALTFLGPFLMPLSSILGIKSTRKELLDTMLCGCFPR PSVGNNQIKSAVTVILASRMERSTFTVRDDD" CDS complement(join(1154433..1154535,1154854..1154987, 1155035..1155096,1155144..1155215,1155266..1155311)) /gene="Cbr-spo-7" /locus_tag="CBG_04041" /standard_name="CBG04041" /product="Protein CBR-SPO-7" /note="C. briggsae CBR-SPO-7 protein; contains similarity to Interpro domain IPR019168 (Transmembrane protein 188)" /note="Predicted" /db_xref="GOA:A8WW24" /db_xref="InterPro:IPR019168" /db_xref="UniProtKB/TrEMBL:A8WW24" /protein_id="CAP24833.1" /translation="MTTRRMPEDPSTACEDLKFFEKRLTEVITYMGPTCTRWRITIVV FAVIIGVTGSKYFANERVDQLQMTITDLLFTTHLDFTLCFIVALLLFGVLGVHRRIVA PTIVARRCRDALSPFSLSCDHNGKLIVKPAVRPPAP" CDS complement(join(1155675..1155767,1155819..1156112, 1156234..1156944,1156993..1157097,1157294..1157755, 1157805..1157903,1157957..1158090,1158139..1158233, 1158293..1158380,1158427..1158541)) /gene="Cbr-ngp-1" /locus_tag="CBG_04042" /standard_name="CBG04042" /product="Protein CBR-NGP-1" /note="C. briggsae CBR-NGP-1 protein; contains similarity to Pfam domains PF01926 (50S ribosome-binding GTPase) , PF08153 (NGP1NT (NUC091) domain) contains similarity to Interpro domains IPR012971 (Nucleolar GTP-binding protein 2, N-terminal domain), IPR004827 (Basic-leucine zipper domain), IPR006073 (GTP binding domain)" /note="Predicted" /db_xref="GOA:A8WW25" /db_xref="InterPro:IPR006073" /db_xref="InterPro:IPR012971" /db_xref="InterPro:IPR023179" /db_xref="InterPro:IPR024929" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:A8WW25" /protein_id="CAP24834.2" /translation="MVKARKEGKVSKKLKQKPDYGPVKNRHTFRGSNHSMNPDRKADS KDKSQRSKATINRLRMYKSFKPIRDSKGKIVKAAPFQDTLASGTQARIEPNRKWFGNT RIIGQEQLQKFQANLGKVLSDPFQVVMKQTKLPISLLQEKAKTQRVHVTETESFEYTF GKKALRKKAKLNDATLEEMTRSAEDREVKYKPELDLSREKELGDRPENQNPLFRAGQS NRVWGELYKVIDSSDVVVQVVDARDPMVSLQKLYENIIVRSKMNVFSMSTKTNSLEKT HNVRMKVFPSILPHFFLSCFNSKRERKRMGEKQRRENLYIDESKNSFSRSLCAISGTR CRHVEEFLRKEKPHKHLVTVINKVDLVPTWVTRKWIGELSKEMPTIAFHASINNSFGK GAVINLLRQFAKLHPDRPQISVGFIGYPNVGKSSLVNTLRKKKVCKTAPIAGETKVWQ YVMLMRRIYLIDSPGVVYPQGDTETQIILKGVVRVENVKDPENHIQGVLDRCKPEHLR RQYGIPEFSGVDDFLTKIAIKQGRLLKGGDPDIVAIAKVVLNEFQRGKLPYFVPPPGC EERAKKDYEEAPINEKCADDDEQLPPDAQLELDDVARNGGPEDDDAIDDEEEEEMTEI GSTCSGLTDLSGISDLAEDLEEVEDVTEEPTSSDAADKKKNDVASVRTRGKRGGKKAN KAKLSGKTIVQAASEKKDKSVVDFAKPGAQKTNMWRKKLEKRRKIKHQK" assembly_gap 1161783..1161863 /estimated_length=81 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(1162082..1162184,1162254..1162377,1162657..1162708, 1162774..1162842) /gene="CBG04043" /locus_tag="CBG_04043" /standard_name="CBG04043" /product="Protein CBG04043" /note="contains similarity to Pfam domain PF04193 PQ loop repeat" /note="Predicted" /db_xref="GOA:A8WW26" /db_xref="InterPro:IPR006603" /db_xref="UniProtKB/TrEMBL:A8WW26" /protein_id="CAP24835.1" /translation="MLVVESQGLGLVPWDQVAGWLVLGLTYFFKFFIIVGGAIPYVFQ YAEIHHRRNASGFSLFVCLALCVANILRILFWFGKRFDNALLAQSIVMLVGNRRSYEP QTHCETVAKVNYQ" CDS complement(join(1164190..1164330,1164395..1164523, 1164571..1164812,1164858..1165011,1165097..1165297, 1165342..1165515,1165565..1165882,1165927..1166052)) /gene="Cbr-ser-5" /locus_tag="CBG_04044" /standard_name="CBG04044" /product="Protein CBR-SER-5" /note="C. briggsae CBR-SER-5 protein; contains similarity to Pfam domains PF00001 (7 transmembrane receptor (rhodopsin family)) , PF10323 (Serpentine type 7TM GPCR chemoreceptor Srv) , PF10320 (Serpentine type 7TM GPCR chemoreceptor Srsx) contains similarity to Interpro domains IPR019424 (7TM GPCR, serpentine receptor class sx (Srsx)), IPR019426 (7TM GPCR, serpentine receptor class v (Srv)), IPR000276 (GPCR, rhodopsin-like, 7TM)" /note="Predicted" /db_xref="GOA:A8WW27" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR017452" /db_xref="UniProtKB/TrEMBL:A8WW27" /protein_id="CAP24836.1" /translation="MFLVSDGDGGIIEEVDYSKIAKLAGISMSNESDLVSELCKEQLR IILREKLRTGEQLPPAVLILLCIPAVIIILLTVFGNLLVLFFKARVGRTNTTLLVWNL GLTDFLVGVIVLPMGAVYLIYRKWIFGRFLCRLWVAADVTFCTCSVVTICVISVDRYL AVTRPLRYKSIVTKTKVITVMSIIWVFSSSILLTTVRWEQPECYDDSLCFVGNEIRHL AHSVVFAFFLPASVTLTLYWRIYKLARNRQKALDRGFLMILGSNMNFLTNTLSQQTTL RVHFGKTNGMVEHQRRVLRTHERIAKTLGVVSCSFLFCWLPFFGLYLTNYKCSGCIPP IAIDVASWLGYCNSMLNPIIYSFTVKEFKRSAFRLVVPIWQFVNRCLPFVPAPPDNIL QRIARHVHRHKEKEMQTRHRSFEMSSNKNGMLTTKVRSKRRQTEPNVVGLITPDHKPP AIISKIYEIPVADSGLVTDRNLHLSPIIISLVSSLDVFISPCHN" CDS join(1167501..1167528,1170112..1170221,1170271..1170380, 1170719..1170821,1170869..1170997) /gene="CBG04045" /locus_tag="CBG_04045" /standard_name="CBG04045" /product="Protein CBG04045" /note="contains similarity to Pfam domain PF04193 PQ loop repeat contains similarity to Interpro domain IPR006603 (Cystinosin/ERS1p repeat)" /note="Predicted" /db_xref="GOA:A8WW28" /db_xref="InterPro:IPR006603" /db_xref="UniProtKB/TrEMBL:A8WW28" /protein_id="CAP24837.2" /translation="MFEKNRTDGKGDFFNAFWAWHDLVSFIIALLVFTAFWSITTWIL INQTVYIEAIGMCALLTEATLGVPQLLRNFQRKSTQGMSIPMVLAWLAGDLAKTGYFV ATGSPLQFWICAILQISIDIFILGQVFVYRKNTAAGELPYTANNQTTSSSLEGATID" CDS complement(join(1171779..1172471,1172518..1172708, 1172759..1173314,1173360..1173468,1173518..1173624)) /gene="Cbr-smg-5" /locus_tag="CBG_04046" /standard_name="CBG04046" /product="Protein CBR-SMG-5" /note="C. briggsae CBR-SMG-5 protein; contains similarity to Interpro domain IPR006596 (Nucleotide binding protein, PINc)" /note="Predicted" /db_xref="GOA:A8WW29" /db_xref="InterPro:IPR002716" /db_xref="InterPro:IPR011990" /db_xref="UniProtKB/TrEMBL:A8WW29" /protein_id="CAP24838.1" /translation="MTMTAADNFKRYCSQLEKYGQTESVHSPVMALLRRKARKQLIEL MKTDNDCTSSINKLWIVGYYHPFQFYAREDNSDMDTITLLTMFCGELQEMLMLTEQIY ASIWNLYIADLHRYMSDDEIQKSLAVGYYTRTIELDPSCGRAFHMLALVQPNLLVAQK VRLLMLAQLAENPVKKRLDVSEFVKSSESDSNSSDQLLEDFANWALNENQKRVDHQLN GLKMINQFESDFKESPISNWSMTMSGCRYVAQLANKNLGFNQFIDCFDVITSFYLEIY SYPSPTMSLCAEIISWICDAKEIFDVNDPVKKEPYFQSLSVFAKTKWNELNDLAIEQI NTVFGSGSLSEGVNSIRYLIFGPESEPSLEELSLLVKNYIRLNQSTVELRSEKGDDSR LLKRINRSETKRLDIPLEVLAEKVSQMNREDWRPVYVIMDYDTILNKSRNARKVWSID DFICILPSSVLEQLDSQKMKIKSVRPVIRTLMELQAEGRIILKACENERRCAEELVQS VKGTANDHKHIVAFLCKCPEEENPIEGVTFYDIDKFYTKYLNS" CDS join(1174780..1175384,1175435..1175830,1175877..1176156) /gene="Cbr-dhod-1" /locus_tag="CBG_04047" /standard_name="CBG04047" /product="Protein CBR-DHOD-1" /note="C. briggsae CBR-DHOD-1 protein; contains similarity to Pfam domain PF01180 Dihydroorotate dehydrogenase contains similarity to Interpro domains IPR001295 (Dihydroorotate dehydrogenase, conserved site), IPR005719 (Dihydroorotate dehydrogenase, class 2), IPR012135 (Dihydroorotate dehydrogenase, class 1/ 2)" /note="Predicted" /db_xref="GOA:A8WW30" /db_xref="InterPro:IPR001295" /db_xref="InterPro:IPR005719" /db_xref="InterPro:IPR005720" /db_xref="InterPro:IPR013785" /db_xref="UniProtKB/TrEMBL:A8WW30" /protein_id="CAP24839.2" /translation="MNQNADRKYIYPKLPPGAISKSTVIVLATGLAGYTALELLYGSE TFYKKAVMPMVHKFVDGEDSHRWAVRAASWGLLPRFGWNRKEYPELKCELFGREFRNP IGLAAGFDKDGQAITQLAKNSGFGLIEIGSVTPIPQPGNNRPRVFRLLEDEGVINRYG FNSDGVGRVHQRVRSARDAWVPEQYAYFGVNLGKNKLTEDAKLDYEIGVNYFAPHCDY LVLNVSSPNTPGLRSMQKKSDLEKLLAYVKESLDMHKLEKRPQIFLKIAPDLIDSEMK DIAHVVTNKKFGVDGIIVSNTTIARPDYLKSENKAETGGLSGAPVREISTECIRKMYK LTNGQIPIIGCGGVFSGEDAYEKIRYNRRNAIDSNYNIFSAGGSLVQLYSAFVYEGFP VIGKIKRELSELLKRDGFAHVSEAVGADHRPKQN" CDS join(1176391..1176483,1176531..1176866) /gene="Cbr-cytb-5.2" /locus_tag="CBG_04048" /standard_name="CBG04048" /product="Protein CBR-CYTB-5.2" /note="C. briggsae CBR-CYTB-5.2 protein; contains similarity to Pfam domain PF00173 Cytochrome b5-like Heme/Steroid binding domain contains similarity to Interpro domains IPR018506 (Cytochrome b5, heme-binding site), IPR001199 (Cytochrome b5)" /note="Predicted" /db_xref="GOA:A8WW31" /db_xref="InterPro:IPR001199" /db_xref="InterPro:IPR018506" /db_xref="InterPro:IPR036400" /db_xref="UniProtKB/TrEMBL:A8WW31" /protein_id="CAP24840.1" /translation="MSELRVISLEEVSKHNYEGVDKSCWIVISGKVYDVTKFLNEHPG GEEVITQLAGKDATVGFLDVGHSKDAIEMTKEYLIGQLPESEVSKSEKTAPKVAQSKG SQSSVLKDFTDIMTSPTWTNFLIPTTMGLIIYTAYKFIFN" CDS join(1177086..1177119,1177169..1177404) /gene="CBG04049" /locus_tag="CBG_04049" /standard_name="CBG04049" /product="Protein CBG04049" /note="Predicted" /db_xref="GOA:A8WW32" /db_xref="InterPro:IPR012875" /db_xref="UniProtKB/TrEMBL:A8WW32" /protein_id="CAP24841.2" /translation="MIRQLSRLTSSISLRRFSDKPKQSLKEKAMANKTPKGSLDKTDV PQYEDPHLKKHPGGVNKKTGEVGGPAGPEPTRYGDWERKGRVTDF" CDS complement(join(1177660..1177818,1177913..1178660, 1178729..1178915,1178969..1179608,1179653..1179733)) /gene="Cbr-unc-37" /locus_tag="CBG_04050" /standard_name="CBG04050" /product="Protein CBR-UNC-37" /note="C. briggsae CBR-UNC-37 protein; contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR009146 (Groucho/transducin-like enhancer), IPR001680 (WD40 repeat)" /note="Predicted" /db_xref="GOA:A8WW33" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR005617" /db_xref="InterPro:IPR009146" /db_xref="InterPro:IPR015943" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:A8WW33" /protein_id="CAP24842.1" /translation="MKPSYLDSLERIKEEHSEMSKHLSQQKSELEKINMEKENMTRSF MTYAEVSSTMRADLKRAEEMNKRLQDFIMQTLSPLLSPEHQASCLAALESFKSASSPR ENGNGAALPPGFPPVAAGMLGMFPNMPFGMNPAMSQLFNQFAQGNGADAVAGSSGGSE AKKPKLEEPDDGELEIDVTNDDNPTTANGATHKNGRDSTNSVASSGASTPSIASNSAK GRQQQPPGNLQSLEQMSFLAGLNPNMLRQAGGFNLFNDPHTSARLAAAMNQMGGRPAY SFKIVDNGIPTPTTFPPDAQKGPGIPTGLKKRMELNHGEVVCAATIARDNTRVYTGGK GCVKVWDITESDLTSTSTVSRPCIATLECLKDNYIRSCKLFQDGKTLLIGGEASTVAL WDLTTQMKTLDLETESQACYALALSPDEKLLFACLADGNILIYDIHNKEKVCTLPGHQ DGASCLDLSNDGTKLWSGGLDNSVRCWDMSQRVELAKYDFNSQVFSLGCCPDDEWVAV GMENNNVEVLSTSGKEKYQLTQHESCVLSLKFAHSGKFFISTGKDNALNAWRTPYGAS LFQLKENTSVLSCDISFDDSLIVTGSGEKKATLYSIDY" CDS complement(join(1180506..1180574,1182282..1182453, 1182499..1182590,1182809..1183590,1183633..1184129, 1184179..1185842,1185885..1185962,1185995..1186477, 1186513..1186947,1186998..1187189)) /gene="CBG04051" /locus_tag="CBG_04051" /standard_name="CBG04051" /product="Protein CBG04051" /note="Predicted" /db_xref="GOA:A8WW34" /db_xref="InterPro:IPR026171" /db_xref="InterPro:IPR029312" /db_xref="UniProtKB/TrEMBL:A8WW34" /protein_id="CAP24843.2" /translation="MDSVIMSQVLTQTTQPGKSGRTEKFVDTLINFRQKYQNSLDEVS ETSKNAVRKSISMLNHEQNWKSLQKLLIQMCTDDRGTKLFEFIHAIFTLLPILPQSSE TETISTNSMKFMMRALTEADISVPNFFGMYNDLMVQLKDAPNRVLIELVNYISSDLKQ ANERFIETMPDAENVENIRVKDDSAKRSFNQRWKDFVAVLIKKIQDVEQLLENIHFFQ LDYNDDLLSGRETADNIIFEWLKLTEDVNAFELLSEIAETFCIDRFCDEVIALEIGID WSSDHLDLEKKRRGIMTWKSIILTTKTEKDKLTRLWTGVIGAWEIDENFEKEKNDRRE LSSDLEQSVLVGHRVLSNNLESARKFLFLIRVNPNLNEKYRVLSSEIGLIFSLIQCSL DRNDAMADMKKSLQRLWRIGEQAEDCVWISDIACGRLLRLVDLQLRIISESLISNDYL RQLLSRPMFSLMLSLLDTPAYQKQVVVVDGRVADGCALWLLSRDLLITVSRAQVDMGT HLSNLFKAIASSSSNSSALVLIDVLRELVRKCSVEILNNSRLIDGLFDYVCRMRRDIA VSLIRCLIPIINTRPQLRNSLFKSLKKDLLCESTVSSAVPIVLLLLRSVSKRREDGGG GQFDHSMSQSFGTFSTQTLNSMGCKKNVDQAVGLELIGIVRRCLWQPAKTKIALYDGI CELATQTSTMLNQFLDMIVSHSKTVPEWKRSDMTTTNGSQVYLVEPVPHLIQTLECLI SELSSFDPEFKLEGTEVLLRQGANQMETWVEYAMRSDATDMGLDRNTEWTTGTVNGRS SLLFSQMILSSYDVLIEHIWRRFEAMGTKEDIEKLVILLNRKNELDRLFKEKTVRKEK DKETEKEKEKEEKMDTSESEILSSAKTLASIMKRLISQPDADSTNASSDMLVDVQMEL LEWAIGRTKVLSTDLVKEYRPLHSILSGTNSLISLSKSLIDFYVGNKCSPWASEIKMG NPMKTLAMESYANILEFLGIKYKQAPSRVTMSWFEEKEGEDEETSRKRKEPNILAVFT VQILTYMIQLGFQLRQAHFLSCRLFRQILEIENEEIEEDKKPKAQYEMQERAILRAAS AAIGMAKNVKVWSNLFVRIIKVLEDETFYNNQMLRDYCKFITTCSLRCAESDKTSSKE MIVIMENVLEFLSEESEDIKYHFISKTTLNIAFEFQFSYIEKSLALIREAFGFQKDFF VKPPVCEFLNCDSYYCLNFSVDGMLHSLLTKCMEITELVSRALQIFVQYKMMQERVTE VLTSYFTTIQMSVVLLQNLTKGWGRSMSDWQSVDLLAELVKTKLRPILAMVDDHIGFS KGKEEMKKKISQKTRYAKSKRDEKLFSKFSHEREAVQHGILVLCKLIKDERFDLQIKN NSIGYRDFRIDMAVLRSKFSGETNDEVREPVHKRRRREQSDENEELMNETEENTTETA ATTNAGSSEEPEEQEREEEPREAEHTVNEVKQEPEDDYEARDISRGTSPVF" CDS complement(join(1187392..1187674,1187721..1187799, 1188218..1188468,1189560..1190185,1190229..1190629, 1190677..1190755)) /gene="Cbr-hrpf-1" /locus_tag="CBG_04052" /standard_name="CBG04052" /product="Protein CBR-HRPF-1" /note="C. briggsae CBR-HRPF-1 protein; contains similarity to Pfam domain PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) contains similarity to Interpro domain IPR000504 (RNA recognition motif domain)" /note="Predicted" /db_xref="GOA:A8WW35" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR035979" /db_xref="UniProtKB/TrEMBL:A8WW35" /protein_id="CAP24844.2" /translation="MSTEFQVQCRGLPWEATEQDLRDFFGNNGIASLDIPIRNGRTSG DATVTFTNEDDYRQALKKDREHLGSRFVIWERFIISSNKGYRYIEVFPMDEPPRRRGD RNDFRPRGGGPPRDRFSDRGSGQRTGPSTDPIVRLRGLPFSVTIRDINDFLAPLPIVR DGILLPDQQRARIAGEAYVVFDSLESVQIAKQRHMKNIGHRYIEVFEATQRELSRFAD DNGLRVPRIGPSPFVSSPPSGPPRGAYDPYGQVDSYNRASEYRRAEPEDPYGRARAPA PDFSSRAPYDPYQQPAAAYSSQPSATGFYDNYDSKPTYDSYARDRAPDPRDARDVRDA RDMRGSRDAPRDSRMSDSRMGDSRAPMDPYAKEPRYPDDGYTSRDPYWRGSSGGQSGH VSAGGGPGIPSAPVSRDIYSGGDSWATGGGGGSRAGGPVASDRDRFGSGSYTNEPYAQ REAGGALRRSEYGRPDDRYSRPDPYGYGRDRDYGSHAAPNNQHFVLRMRGVPFRATET DVYEFFHPIRPNQVELIRDSQYQRPSGDARVIFYSRKDYDDALMKDKQYMGERYIEMI PDNGRY" CDS join(1192728..1192816,1192868..1192967) /gene="Cbr-gpc-2" /locus_tag="CBG_04053" /standard_name="CBG04053" /product="Protein CBR-GPC-2" /note="C. briggsae CBR-GPC-2 protein; contains similarity to Pfam domain PF00631 GGL domain contains similarity to Interpro domain IPR015898 (G-protein gamma-like domain)" /note="Predicted" /db_xref="GOA:Q4VT25" /db_xref="InterPro:IPR015898" /db_xref="InterPro:IPR036284" /db_xref="InterPro:IPR039227" /db_xref="UniProtKB/TrEMBL:Q4VT25" /protein_id="CAP24845.1" /translation="MDKSDMQRNVDSLRSQLNIERTPITVSAAELRRFTESQEDPLVN PIDKKVNPWAEKSKCSML" CDS complement(join(1193189..1193435,1193708..1193918, 1193971..1194070,1194121..1194224,1194272..1194401, 1194610..1194612)) /gene="CBG04054" /locus_tag="CBG_04054" /standard_name="CBG04054" /product="Protein CBG04054" /note="contains similarity to Interpro domain IPR018247 (EF-Hand 1, calcium-binding site)" /note="Predicted" /db_xref="GOA:A8WW37" /db_xref="InterPro:IPR002048" /db_xref="InterPro:IPR011992" /db_xref="InterPro:IPR018247" /db_xref="UniProtKB/TrEMBL:A8WW37" /protein_id="CAP24846.2" /translation="MTDGPVSPQDHHKPAAQQKLNLRSGPKSVEKFAKALDTNNDGFV DKNELLAWVSESYQKTVDREAVERMSELDENADGFVSWEEYLLDSFPEEELHNKEEET LIAQDRMYFKQADQDDDGKLNLEELASFLNPEHHPHMHSVLIAVTLLEKDQNGDGAID EKEFLGELDDQRGSEWYKVEVERFHTVYDHNKDGKLSGDELVAWLLVDGTTAGSYEAQ SLLNNADDDKDGKLSYDEIVKHHALFAKTEAAQEADHLHPYSHDEL" CDS join(1194777..1194892,1194942..1195068,1195116..1195214) /gene="CBG04056" /locus_tag="CBG_04056" /standard_name="CBG04056" /product="Protein CBG04056" /note="contains similarity to Interpro domain IPR010916 (TonB box, conserved site)" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WW39" /protein_id="CAP24848.1" /translation="MATSTPIQRLEFAEKICNRDLRGYVLYSKESAWIWVGESKIESI GLAHFPNFTMLVDGENTQREFIKSTTLRLTKMSKFTQVFFTTDIECEEGLFWKALNDN ILAKLTAINSE" CDS join(1195632..1195691,1195737..1195901,1197244..1197396, 1197443..1197851,1197913..1198121,1198165..1198331, 1198376..1198520) /gene="Cbr-twk-47" /locus_tag="CBG_04057" /standard_name="CBG04057" /product="Protein CBR-TWK-47" /note="C. briggsae CBR-TWK-47 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domain IPR013099 (Ion transport 2)" /note="Predicted" /db_xref="GOA:A8WW40" /db_xref="InterPro:IPR013099" /db_xref="UniProtKB/TrEMBL:A8WW40" /protein_id="CAP24849.1" /translation="MSDEENSSSSELPVQNKLKKMLKMALPHVGLAVFLFLYLLLGAY AFYYQEYDADKKIQMTKLHLIRQRYRKIENETTTGYAYATPVTPIGQSFAIIYGLVGI PLMVLAAVDFGRFLSHIVLEIYSKYLDLVHKLKIMKTVIMERHRARDEKRRLHAFKRL VQDTGSTISECTTQKDVPLEEEQTTDSDEMPEKRLPLVINASILLIFCMLGGVLYIAA GGRATFIESFFLTFNLVANLTMSEMPTELNHILTIIYIFVFVTCVLSMSAELAALELK ELFMKIHYFGRRINFKRRQPKKEQMDVQVKELLKIIEEIRKRYPEKEKITTMDILEYM HENTVNDKLNERRDTIAFMPQTMEVIKFADEQDLEERSFSRHEDVASLGGKASTKLAS VVDVMSFSPEENMEKRFKKEIRKYTTEIKYVNKRGQITNKAEL" CDS complement(join(1198813..1198920,1198974..1199073, 1199122..1199630,1199676..1199874,1199927..1200204, 1200256..1200382,1200539..1200672,1201668..1201742, 1201790..1202344)) /gene="Cbr-obr-4" /locus_tag="CBG_04058" /standard_name="CBG04058" /product="Protein CBR-OBR-4" /note="C. briggsae CBR-OBR-4 protein; contains similarity to Pfam domain PF01237 Oxysterol-binding protein contains similarity to Interpro domains IPR001849 (Pleckstrin homology domain), IPR010916 (TonB box, conserved site), IPR000648 (Oxysterol-binding protein), IPR018494 (Oxysterol-binding protein, conserved site)" /note="Predicted" /db_xref="GOA:A8WW41" /db_xref="InterPro:IPR000648" /db_xref="InterPro:IPR001849" /db_xref="InterPro:IPR011993" /db_xref="InterPro:IPR018494" /db_xref="InterPro:IPR037239" /db_xref="UniProtKB/TrEMBL:A8WW41" /protein_id="CAP24850.2" /translation="MEGPLSKWTNMVHGWQYRWFKIENDTLLYYTSREKMLKGQQRGL LYNLITSKGFFLGQIRLSGAVVGIDGENNSLFTITVEGKTFHMQGRDLRERNQWVRIL ENSIRASSGYAKNGSIGTTPAQHFKQKTEEASEFLKTLVDKVKELEQLKNGERVADEK KTIDSLIAASNNLTNNVKHAIIYLQMAQARLDPNMKTEKLMFTHPDLDEKPSSRVGTV SDSTQTSSHPSSNTEKPISGIQHLDHLKPHRAESYASSDEEEFYDADEELIDLDKFEN EKSGPESGDSERCTDAGIMSSDEDGYDFGDSHEDFDEIYNNAEEHDIGNVQQEHGSVL MHLLSQVSVGMDLTKVTLPTFILERRSLLEMYADFFAHPDLFIATNGIDTPEKRMISV VRYYLNAFYAARKSGVAKKPYNAILGETFRCRYTVPNSSLSGKKTESGPWPGSDEKQL TFIAEQVSHHPPISAFYAEMPSEGISFNAHIYTKSSFLGLSIGVASIGEGVLTLHNYG DEQYTITFPSGYGRSIMSTPWFEFGGKVKVECEKTGYYADIEFLTKPFFGGKPHRIQG TICREGVKKPILTVRGEWNGTMYAKPPNGDEYVFVDVKSKPEVKKECIPVMQQGKRES RRLWRHVTAALLRNRIQTATTSKRFIEQRQRQEAKERLENGEKWTPLLFETTDKEGEW MYKQKLGVRNTL" CDS join(1204958..1205038,1205089..1205939,1205990..1206481, 1206524..1206614) /gene="CBG04059" /locus_tag="CBG_04059" /standard_name="CBG04059" /product="Protein CBG04059" /note="contains similarity to Pfam domain PF00155 Aminotransferase class I and II contains similarity to Interpro domains IPR001176 (1-aminocyclopropane-1-carboxylate synthase), IPR004839 (Aminotransferase, class I/classII)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WW42" /db_xref="InterPro:IPR004839" /db_xref="InterPro:IPR015421" /db_xref="InterPro:IPR015422" /db_xref="InterPro:IPR015424" /db_xref="UniProtKB/TrEMBL:A8WW42" /protein_id="CAP24851.1" /translation="MRTAQTLSGIVARRFFNTSTRIMASGKTLTVSNINPNVIKMEYA VRGPIVIRAVELEKELAAGVQKPFTNVIKANIGDAHAMGQKPITFIRQLLACIANPSL METDKSLPSDVIEHAKAFLGSCGGKSAGAYSQSTGVEIVRKHVAEYISRRDNGVPSNS EDICLSGGASESIRNVLKLFINKGSGKKVGVMIPIPQYPLYSATIEEFGLGQVGYYLS ESSNWSLDEAELERSFEEHSKEYDIRVLCVINPGNPTGQVLSRDNIETIIKFAQKKKL FILADEVYQDNVYAQGSQFHSFKKVLVEMGEPYNKLELASFHSVSKGYMGECGMRGGY VEFLNLDPEVYVLFKKMISAKLCSTVLGQAVIDAVVNPPKEGEPSYALWKKEKDDVLA SLKERATLVEKAYSSIDGISCNPVQGAMYAFPQITIPQKAVEKAQSLNQQPDFFYALE LLESTGICIVPGSGFGQKDGTYHFRTTILPQPELFKDMLARFTDFHTKFLAKYK" CDS join(1207651..1207769,1207820..1208038,1208903..1209962, 1210102..1210212) /gene="Cbr-nhr-2" /locus_tag="CBG_04060" /standard_name="CBG04060" /product="Protein CBR-NHR-2" /note="C. briggsae CBR-NHR-2 protein; contains similarity to Pfam domain PF00105 Zinc finger, C4 type (two domains) contains similarity to Interpro domain IPR001628 (Zinc finger, nuclear hormone receptor-type)" /note="Predicted" /db_xref="GOA:A8WW43" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR013088" /db_xref="UniProtKB/TrEMBL:A8WW43" /protein_id="CAP24852.1" /translation="MAQPIPTDPMHFPTTHGYPAIYPYGQQYPPDMSNFAANPQFTPE LFQMYFQLYTNQQFTHPAPPHPATEIESSSHTQASPTMNQSSEEGRDSGNETISPPLP PQPHLYQNNSSQTTPAVSPHYPAPLPPQVQHQTPVQVITPEQHLQQINQTIPNNQTPV QLAPQNSAYAINNLLSPQNSPNAEEDEQENRQTRRNTFPTSENRKRPIPSGPPIVPPN FTSNYTPMMMQNFAAFMDPSYFKRESCQICGDSASGYHYGVLSCEGCKGFFRRSVHRK STYVCQKGAACSFSLENCTINRGIRTRCQACRYARCLAVGMNKESVRITKDEPKKTEY TKWSEAQSNELKELTEVFKSTMPSSMRFNSFNDVFEAIKKLIEDVKGLKTIFKSDSGN IPNVIRLFSKGFLTIRAAFTFDTIPFYSAINPNFNSDVEQLRSGIRNTVFNDNLLALV TAIHIIKSAESGENSSVLPIYCKELRSQFSITHPQESGIYERIIAKLGPCSN" CDS complement(join(1212591..1212662,1212716..1212871, 1212917..1213545,1213594..1213711,1213757..1214257, 1214301..1214384,1214433..1214564,1214610..1215374, 1215424..1216047,1216092..1216354,1216409..1216634, 1216684..1217031,1217078..1217148,1218295..1218577)) /gene="Cbr-mtk-1" /locus_tag="CBG_04061" /standard_name="CBG04061" /product="Protein CBR-MTK-1" /note="C. briggsae CBR-MTK-1 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR008271 (Serine/threonine-protein kinase, active site), IPR000719 (Protein kinase, catalytic domain), IPR001245 (Serine-threonine/tyrosine-protein kinase catalytic domain), IPR020635 (Tyrosine-protein kinase, catalytic domain)" /note="Predicted" /db_xref="GOA:A8WW44" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="UniProtKB/TrEMBL:A8WW44" /protein_id="CAP24853.2" /translation="MSNYQCKKIKRCKSMPTIDDETVGDVVKKQSVLFLIFEIIFTDC TVECSKKEYSTERSGSSFRSAIKKATTRLNTSRREYMGRRSLGVATVSSKVKRKKSKT ERDRDIQDDMYDEGYDASSTSSSSSRPYRCIPILEQSNRSSQNYLPSVESSSSDSDRE IRRPPLLYSTLLMSPPKTLSIESLSEQFDQLEVTDRSKLHLEISHFLKKADGEKKKQM QMSQRMMNCPQFGQTMRLIVEESEHTRYTFENILWLILKAYFSVGSSGKDIMIGKSEW MAEDESIAKARKQYMMVMDMIKEFKFEFVKSDKDDTSFDSLNRRMEFSPDYCESLRES RKRVTDILDKYDTLVELFPNQNALWKVVELDRGEAEKKMLEGRMISMRVWLNILNDMA DKFRALGELFEVESMAGAEWFQPLDENNKIFALEDVRVVFLEYVKKSLNLKGMKKVLN RVEKIIELTLVKTAILMQKPPSSYAAATASRSSFPFNQTMKERYGEMAQWRFCNTLSL SLNLPPLTHLFFFLVAVPMQLVVHWLEIRSATEPPDSSLLDELTFDAMITDSRDCVEE AVRIKKNYSNILQSMCSKCAMPGFLYPLKYNTYVLDVFKKYIHYVKCWSNCDTVRKEP TFLFSRLEMEWNSAVQCAQSIKSALELLCNTYCDIIESLIKEVVEGFAVDQIEEIRNR YSDPVESEDGLDYDDDVNGSRPLLRHPSHHQFMLAINLLIREVKERELRVFSLLRTTL NDSQDAVGYELRPEVDKARMLNEMVPDFCLIQLVMSSDEDDQYNNDLVNLPITMFVYR TSVDKSYVETCMLAISEGRKIDDGCIVIVPDKDHQLQKHWTGRVVKIVIDEETRICYR FLRDDMTLCLASCTVRAGMEQKYSKFLKCVAPSCSSNFIINSRIQELTEGTLLTHLEN EGRRIAMLLGKLGVGQHEERTLSSLGFKLEKHFLVAFQIHRDVARVVSDSFMSHLGNS MVENALKLTRQWIEYVQLKNAIPSPTLPMWANPGFTFLQFITEPKWSNPEIMTDKQFN EFNNLVRKFEAKIIQSSSNMSTPIVPKQRKTRSTSSKTSNSSDDKNHRKSKKENQMLR IQEIEEKRYKMDFENRQIGRVITDDSHFILATDRKVVTRAPFLFVLLDEIAAGTFGVV HRAMDITSHRVVAAKVMRIRRENHKAIESEINIFRQLTHENLVKYYGVEVEDSDVIIF MEYCSQGTLERICQGKMDLKMVRQYTHSLLRAVQYLHTQKIIHRDIKPANIFLDKCTV LKLGDFGSSSRLVETSTVYGEFQTTAGTPQFMAPEIYSYGEKDEVTGSYSGYGRSVDI WAIGGTVVNMMTGKLPFEGQTRHQIAFSICFRKQKPIYPEIANERLDVQTFLDKCFEF QPTDRATASELLQTTFANVNVSDEYHIPDYQSQSSKDTSNSYFFV" CDS join(1219362..1219514,1219565..1219668,1219894..1220260, 1220304..1220522,1220571..1220888) /gene="Cbr-srz-4" /locus_tag="CBG_04062" /standard_name="CBG04062" /product="Protein CBR-SRZ-4" /note="C. briggsae CBR-SRZ-4 protein; contains similarity to Pfam domain PF10325 Serpentine type 7TM GPCR chemoreceptor Srz contains similarity to Interpro domain IPR018817 (7TM GPCR, serpentine receptor class z (Srz))" /note="Predicted" /db_xref="GOA:A8WW45" /db_xref="InterPro:IPR018817" /db_xref="UniProtKB/TrEMBL:A8WW45" /protein_id="CAP24854.2" /translation="MNSSSFFSEPSAFIAVYGIGCFVFIIYLTSIFITFPLYVYVHRL NRKSEKSNYFYPITKHFYSVMCSMQFYSYVTISIALIAWLFFELTAAGSVLIVSLFFA YSVAVIVTSVQNVLLFVLALRRFMILFLPNFKKVISIDAKSFKIWLRVMYVGYTLVQV SSKVVKVFCGTDSIAQNALLKRKNHSKNEENLHEAYEDCSATTDMIYVRIYIAGDVLV MLAAVLYVIMFIKIRKWSKMTSDSLNNPEKYLFYQTLLIVIAKLLAMTIILILFYEGR DSSDAVFATFVFSDIATTPFVIQGSYLLCNRSNVDTILSIQFKKMKTWNMIICGSGSV SEGRQRRREFKRKIIEAKRKAEDLLRGDKTISKLAVNVIPIHFIQRRVENIN" CDS complement(join(1222996..1223148,1223196..1223354, 1223408..1223489,1223538..1223636,1223685..1223982, 1224031..1224149,1224222..1224562,1224609..1225040, 1225090..1225251,1225302..1225476,1225522..1225589)) /gene="Cbr-vps-51" /locus_tag="CBG_04063" /standard_name="CBG04063" /product="Protein CBR-VPS-51" /note="C. briggsae CBR-VPS-51 protein; contains similarity to Pfam domains PF04124 (Dor1-like family) , PF10475 (Protein of unknown function N-terminal domain (DUF2450)) , PF08700 (Vps51/Vps67) contains similarity to Interpro domains IPR007255 (Dor1-like protein), IPR019515 (Vacuolar protein sorting-associated protein 54), IPR014812 (Vacuolar protein sorting-associated protein 51)" /note="Predicted" /db_xref="GOA:A8WW46" /db_xref="InterPro:IPR014812" /db_xref="InterPro:IPR016159" /db_xref="UniProtKB/TrEMBL:A8WW46" /protein_id="CAP24855.2" /translation="MSSFSNVLDVTKPDFDVDAYVVKLLREKTLDGLVKEEEEMVSAV RRLDSDVHQIVYENYNKFLTATNTVRKIQDEFTQLDSEMKSLSQSMSSISSLIGSLDG VLGEKRDDILQLGSSYKVVNSLKHIFDLPHVLQSEFDERNYGEVLRMFKLAEESLDQY KDVPTVQSVLQKSKKIYDMTENQLMDQLRNPASGAELVSEAVDLLLTIGRDEDEVQKV LLKCSEQSLREDLKELSTNHSDVLDLVDKASESFIPNLTLIATTHDRLFEEKRGELLT VLRTEMNSLHALVSKVFLSSSDAKDCSIVVRALDRYFRKISTCRHVIPGFDFLPLTIE LINAVSKHEIDLSLTRIKEELRNALNEVRKSLINEEKDLSALANKIEQVFVHQVKVEK IDVTFANLPPDEFRQSFALNAHERLLVQAFHKFAELGDEYEAGAGEVRFIDPRVLLVF AVALQHLSNKSAVYLLNLCREQFSLSPEEGLTDIAVVTSEVKTRAQKLVRCYAEKTGL SMGEALIKGCTMLVQPSATPSSVRASVRRLGEDMAACDSELASLLGGDTKPKDTRVNR RPITTALDAARDSLWCERIDFHLQIHFNRASIITAVVKVVLKIFIESIRLQTYSKFGV EQVQVDCYYLQRSLAALVSDEVVVNSMVDQALSSALKRCQDPVLVHPSRLAQLCEQPP ANRPSSQASSLGY" CDS join(1225849..1225906,1226065..1226157,1228378..1228568, 1228640..1228765,1228904..1229592,1229641..1230030, 1230077..1230311,1230359..1230680,1230727..1230854, 1230902..1231540) /gene="Cbr-lin-35" /locus_tag="CBG_04064" /standard_name="CBG04064" /product="Protein CBR-LIN-35" /note="C. briggsae CBR-LIN-35 protein; contains similarity to Pfam domains PF01858 (Retinoblastoma-associated protein A domain) , PF11934 (Domain of unknown function (DUF3452)) , PF01857 (Retinoblastoma-associated protein B domain) contains similarity to Interpro domains IPR024599 (Domain of unknown function DUF3452, retinoblastoma-associated), IPR002720 (Retinoblastoma-associated protein, A-box), IPR002719 (Retinoblastoma-associated protein, B-box)" /note="Predicted" /db_xref="GOA:A8WW47" /db_xref="InterPro:IPR002719" /db_xref="InterPro:IPR002720" /db_xref="InterPro:IPR024599" /db_xref="InterPro:IPR028309" /db_xref="InterPro:IPR036915" /db_xref="UniProtKB/TrEMBL:A8WW47" /protein_id="CAP24856.2" /translation="MPKRATDDPGTSSTNPDSEHSPYEDLTESSQFSSPSGEPAPKRM DIDIKEELNESNPEPNAALNPANIKLESDNREEGEEDEEEEDGNSQSPIAVLEDDEED EDDADSVIDKTNTPEPSDSFLECCTKANLPSEITVASWEIYYHAVQRVSLEVSGKKCF QGSEAAWQLSAIYYYLLSKGIKRRGKASRLLTQPFPISILTIANTFDVSVAELIDKTT RFAEIIHSRKMRRYLEYIRRLQEGLAVTCVIFKKFCRVFNGIFEEVKESTHNCPSSYE LFTILWTYFLVMKSRLPTDDLINNYQLLFSMIDHLYTEMSSLQDGIVYHLNQEFVGNL IDKDCTILRALCTNFGGSVLDTRHFYQHTYKKMDKTGLPTSWDFAEFRDEILNAPKDA YVSYLLQRGSIDERVFIPSPEDFSMVFKDQFVAANVLKISHTGRLFVDAEFLNTISNN QCLEKLSHGKAGLEKLSQGREKPKVPCVEYNLELGQYPEDDVSNQAHERLVRIIGGWK LERSKLKEMCERMSDSPMATILLKSDELTSEFERTLFEERGESSQMTFMTNFHLDLRK ELEKVFLIFMEKIIVAEVAKKVREEDLVNVVRREEFLNSVFCFCVELVLFSNGYDRPF PWSADVCNCHPFMFHKVIDLMISHEKRLSRQMVQHFSRIEENVIEYYAWKSDSPLWQM VVRCPFANFQEFGEDWADKLNTYSPMKFTPLKKSSDELRDELGRPIVPQNQTSRTLRI FLKRTYFTAARRLQELTDRIAMATRPKSQCWSVFDYLLRNDTLIFMDRHLDQIILCCV FVIMRMHGSSITFHEIMGQYRRQSSSAMYVYRNVSVFRDQVDEDNPVPVNLKETISER LEAPPKSKTTVDVIKYYNIEFLERIKHIVKQIDTALDEDLMEMPIPTSHGLAPVRVYL TQNVSIQVLPRTQYKESRQERAISHLERNGRTLENALSNANE" CDS complement(join(1226437..1226574,1226729..1226948, 1226999..1227176,1227230..1227323,1227372..1227551, 1227603..1227722)) /gene="CBG04065" /locus_tag="CBG_04065" /standard_name="CBG04065" /product="Protein CBG04065" /note="Predicted" /db_xref="GOA:A8WW48" /db_xref="UniProtKB/TrEMBL:A8WW48" /protein_id="CAP24857.1" /translation="MTVTSPQTGSTQQPRIEAQHVSHRLVVEPEPRVLCGLPVGGAVG ILGSILMICQIFGLFYLSPFLLYFFEISIGSAMMFILSTGAKHRKIAYITAYMLYISM YTFWVFFLILGAILATIYLVDNNSNICNPDHIENPTTQKGCITQKFTTGDVEMVVISC FFLTVSIIVALIQMRYLMILYNFLRRNAHRLPTHQANNYNVQYIVPTPISPNGMPPPP RYTAYAPPVPMQAAPTEVKQPLPNENDVPTPRNGSVTSTPILTVSNLEQIGADNLAFG DDTTDRSRAPSRPPAYSDVVEPGHITVRNDALS" CDS complement(join(1231868..1232128,1232174..1233107, 1233152..1233789,1233836..1234072)) /gene="CBG04066" /locus_tag="CBG_04066" /standard_name="CBG04066" /product="Protein CBG04066" /note="contains similarity to Pfam domains PF00505 (HMG (high mobility group) box) , PF08512 (Histone chaperone Rttp106-like) , PF03531 (Structure-specific recognition protein (SSRP1)) contains similarity to Interpro domains IPR013719 (Domain of unknown function DUF1747, eukaryote), IPR000969 (Structure-specific recognition protein), IPR000910 (High mobility group, HMG1/HMG2), IPR000135 (High mobility group, HMG1/HMG2, subgroup)" /note="Predicted" /db_xref="GOA:A8WW49" /db_xref="InterPro:IPR000969" /db_xref="InterPro:IPR009071" /db_xref="InterPro:IPR011993" /db_xref="InterPro:IPR013719" /db_xref="InterPro:IPR024954" /db_xref="InterPro:IPR035417" /db_xref="InterPro:IPR036910" /db_xref="InterPro:IPR038167" /db_xref="UniProtKB/TrEMBL:A8WW49" /protein_id="CAP24858.1" /translation="MSSLEFTGIFTENGGVLTPGTLKVEDTSAIFKSDKAGKTIKLSP GDIKDIRWQKLGNRPGIRFGLKDGGSHRFGGFKEADFGKILVVTESSWGLGIEKTNLV IKGWNYGNVQVKGKNVEFSWENNPIFEIPCTNVSQCVANKNEAVLEFHQHENNPISLM EMRFHMPVDPENEDDIDRVEEFKQAVLAYAGLEAETEQPITLLSDILCTTPRGRYDIK VYPTSIALHGKTYDYKIPVKTITRLFLVPHKDGRHVYFVLALNPPIRQGQTRYTYLVF EFVKDDDQEMEIALTDDLKEKYGGQLKSEMDGPLYENVSILFKVVCNLKVTVPGRFIG SSGTPAIQCSHKQNPGLLYPLEKGFLFIHKPVMYIRLEEISSCHFARSDAGTVTRTFD FEIDMKSGQSVMFNAMEKEENHKLFDYLNKKEIKIRNSQRLEKNQHVDSSDDEIDPYT NTVKAEGRGREESDDDESTDEDYDLDKDIKNQKKDRDSSEGSGSEPDDEYDSGSEKDS SGTGESEPDDENVRPKKKSEVNSEKKSKKEKPEKVGKKRKGKKEKDPNEPKRAATAYF LWFNANRASLKEDGDTVPEVAKKGGAKWKEMSADDKKEWEQKAAQDKIRYENEMKEYK KNGGGSSSVTSNPPKKGTSSPSKYKSKEHISDSDDSDDDEPPKQKKSSKEATPTDESD MASDNSD" CDS join(1235837..1235983,1236032..1236937,1236982..1237140, 1237185..1237776,1237826..1238038,1238088..1238332) /gene="Cbr-cpb-3" /locus_tag="CBG_04067" /standard_name="CBG04067" /product="Protein CBR-CPB-3" /note="C. briggsae CBR-CPB-3 protein; contains similarity to Pfam domain PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) contains similarity to Interpro domain IPR000504 (RNA recognition motif domain)" /note="Confirmed by transcript evidence" /db_xref="GOA:Q6E3D5" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR032296" /db_xref="InterPro:IPR034819" /db_xref="InterPro:IPR035979" /db_xref="InterPro:IPR038446" /db_xref="UniProtKB/Swiss-Prot:Q6E3D5" /protein_id="CAP24859.3" /translation="MNRNCASPEEGGTTEQLVKEASDIVERDGFENKKKPPTLKLEHV EVVGEKSPTPATVYDLFKKYKKPDIVTNSNGDDMNVGFDQLSSDEKNGFLRKLQMLTV SSRKSVKVVGESTPSSAGRLLKKFAPSRKPTEKISVDEPPSRFNFFGRSTKKLSDSDR PSSLPKKKSARRLLFGKEEQKPEPEVVKNRVLPAMTSQQSAKGAPIPINKPYRYQGPR GSLETPTDSPAKISSNSSSSSPIPPVPTRNHFTSMNEESPSKKRTFSRQGLSNRDNLS NGSWHGELPPRDYTSPTFSRKIFVGGVPWDITEAALKDSFGEFGSCAVEWPGQEARYR SGQSNIAPLTNLRNQSKYAGQAATGYVYMIFEDERAVASLLHECSQEIGGAGEWYFKI RAQRSKSTEIRQVQIIPWVTSDSMFCEDESLLETGIEPKRTVFVGALHGMMTAQVLHW IMEDCFGSVECVQLDTDKFKYPIGSGRVTFREHGAYFKAIEMGYLHVHTSKFRKRVQI DPFLESTSCMVCTTESAQCFCRNRNCFKYYCHTCWAIDHGKDNADDVHVPVIVPSSAS KAYAGPHRRPHLTSNSLSKSHGCSTNNQLSHVLSPGFPMIVGGPSQTLSALYGYIQNN QQMMLTPAVYETPMTPPSNESNAKRRSFTEFQNPAIFFNPSSMMTPQKSATCSETPVP AFFTNSAAFLTPNSNYYGSPNHSSSNISQSPQQYYGANLYYGYMPPQVAYDGSTNGSK LSPIHVPHIPNYQ" CDS complement(join(1239001..1239227,1239277..1239392, 1239442..1239488,1239533..1239655,1240091..1240164, 1241846..1242128,1243747..1243815)) /gene="Cbr-rnt-1" /locus_tag="CBG_04068" /standard_name="CBG04068" /product="Protein CBR-RNT-1" /note="C. briggsae CBR-RNT-1 protein; contains similarity to Pfam domain PF00853 Runt domain contains similarity to Interpro domains IPR013524 (Acute myeloid leukemia 1 (AML 1)/Runt), IPR000040 (Acute myeloid leukemia 1 protein (AML 1)/Runt)" /note="Predicted" /db_xref="GOA:A8WW51" /db_xref="InterPro:IPR000040" /db_xref="InterPro:IPR008967" /db_xref="InterPro:IPR012346" /db_xref="InterPro:IPR013524" /db_xref="UniProtKB/TrEMBL:A8WW51" /protein_id="CAP24860.2" /translation="MTNVFSHVRSFLEQQPAPAKTLEKSSSPNILYTALPKHWRSNKS FQEPFYVVLLTPVPDNTEGTLRNFPYLSFPFVPVSIWAGNDEKPCEEVRNEKAKVHRQ VAKFNDLRFVGRSGRGRKFHLTIVIHSSPMMVATVKNVIKVTVDGPRDARIPKPSGCT KRQEQQQTPTIFPCDILQSSTPSMPMIPPPWWTLAPNLPPLTLPLMTPGVPSISAALW KLHNDSMRTPIKRKHEQENFSLNTSTCISSPSVFITPSSHDRTRDSMSPPQSNKPSSA SINLIQETPETVPSKRRRNMSTTSSCSSSPTIWRPF" CDS complement(join(1244441..1244602,1246583..1246723)) /gene="CBG25253" /locus_tag="CBG_25253" /standard_name="CBG25253" /product="Protein CBG25253" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFM3" /protein_id="CAR98703.1" /translation="MSSPTSSPTPIFTLAIRRPVMCVRWQSTHHNRQGPNEEETGHET NKMHFQWKKLSFYTRIISIEKISEYLCYRNPYTDSESFESIILLLTHLHPRHVSSI" CDS complement(1247533..1247805) /gene="CBG25254" /locus_tag="CBG_25254" /standard_name="CBG25254" /product="Protein CBG25254" /note="Predicted" /db_xref="UniProtKB/TrEMBL:B6IFM4" /protein_id="CAR98704.1" /translation="MWLRRGKERQTEEKRKKKADFVADQINLEGPPTTTVILEEKSSK REKEDELWPNFMTRRRKAANGMEDNTTSNRVDNSPPTSNQILDNLL" CDS complement(join(1250717..1251058,1251113..1251940, 1251991..1252104,1252148..1252207)) /gene="Cbr-uri-1" /locus_tag="CBG_04072" /standard_name="CBG04072" /product="Protein CBR-URI-1" /note="C. briggsae CBR-URI-1 protein; contains similarity to Pfam domain PF02996 Prefoldin subunit contains similarity to Interpro domain IPR004127 (Prefoldin subunit)" /note="Predicted" /db_xref="GOA:A8WW52" /db_xref="InterPro:IPR004127" /db_xref="UniProtKB/TrEMBL:A8WW52" /protein_id="CAP24861.1" /translation="MAEEDLSSKMSELYVAECNAAKARLEVETECRRIIADNYEKVMT QVQEHSKKLEVPTTAKICEVGYFCDAHIVRTNQVSMEMGSQYFVECSVHTAEKIVKRR VEEMRTTRDEGLESIRILNDKIKFAQENFASVAIEGGPIEIVEKYDDEMERMFYDNRK KRNQEKQQKNDESTGNGGSKDNNAHDKVMDRLEELEKIEADNNEIGANESEVSVPKSF EVSVDELEKLEEMEEEDESTTEAALRFGMNERLLAQPGVSQKEMERLLEFLDDCDRSS DEEYDEEEEEEGVETEENENNRSTSQKVVELDSDDYDSDDDKAHNASKVQAHVQEITE KLASTKIKRKKSGVRFAEKLENVKTFLESDTVEIKEEAVIETKSILRNTEPTPVDPKA LAPEQKELATMSTATFPGEIVEKDPYDCEPSTSKDPAPVITEKKISKFRASRNRN" CDS join(<1252672..1252813,1252862..1253196,1253241..1254125, 1254170..1254931,1254976..1255091,1255133..1255313, 1255426..1255566,1255611..1255889,1255935..1256222, 1256273..1256454,1256709..1256936,1256995..1257142) /codon_start=1 /gene="CBG04073" /locus_tag="CBG_04073" /standard_name="CBG04073" /product="Protein CBG04073" /note="contains similarity to Pfam domain PF12612 Tubulin folding cofactor D C terminal contains similarity to Interpro domain IPR022577 (Tubulin-specific chaperone D, C-terminal)" /note="Predicted" /db_xref="GOA:A8WW53" /db_xref="InterPro:IPR016024" /db_xref="InterPro:IPR022577" /db_xref="InterPro:IPR033162" /db_xref="UniProtKB/TrEMBL:A8WW53" /protein_id="CAP24862.1" /translation="VDETAVDIALVRYSRIIHLYQEQPRLLDKWIPGFVDLLVDYVTL LENGRSQNAELNRVTREAMNYISELCIVRGSKTIVRLLPHQVHLLDPLLRTLEFYQTS SLTDHNQRNLLLMWLWIVVKNPFDLKKFDPTGDPDNVITRIMNVALHYMEWDWNRTQT SAALVIAQCLSRADGLPKVPSFLSRVLDSIKKHHESRKSLLSNLILLLAILKHVDRRV LVNHVSNMHEELGFLYPIDEKKGVLINKCLVKVIQRIGLIALKPRTCKWSYNRGKRLL EGVLNEAEYDIAETTNDHDANSEMVDDESEELENPQIVEWTLVHVLEALSHSDTAVRW SAAKGVGRITVRLPNLDLATQVVGSIISGHFGEVAEYSSWHSHGACMAIAELAHRGVL LPHILEDVVPALEFSLVFEDAMGKHQYGNQVRDAACYAVWAISRTYEPSMIAPYLQRL AASLLCGALFDREVNLRRAASAALQEMVGRQKTVADGISLIQLVDYFAVTNRQKCYEK HCVPVAQYPSYSSVILRHLITKKVVHWDEKIREQAATSLEMICEKSLTMISDNYYIES IDNFLKASCGARTSPLLRHGYLLAAGHLIKGLAFRGVDMSSTFTDVARVPAVLRPFCD KTTQPGALIRRTLCKFIELISASKKVPLPDDELKTWTDVLLDLVVDPRESIQSLTKLT AAEFSKTFLSKNGELMQSVKVKILNSLVKCSEESERTGMGLLCEVLHQDVIDFEIFDA LCNTILSSNTTDAKWAIARQQAVFAITRISVQAPTEIFSRIGEKCFETLYKAMTDYTT NSKGDVGRFVREASMGAMADILILAKTEPSFLDQHVVRSARHMIQQSAERIGRTRERA CEALLKLIKCEITGRRLPHIDLLRSIYVDPKEFIADRALLQLAPILSLAEDYYENLIL GIVVSAGGLAEGTQKTAKQLLLEYQRDICEDKPRFDQFLETFSFMFQNSRKVARIANS FMQVLPQTLGNLGVYEECPEESDAILNIVENMKVIAVQSPLMSRQRLSIDSLAELLNC GKKSKVYRTALTMILDSLGSPKPVLRKSAAERLYEHLCCAEEADNDVLELLATTNWQD ESDTVLKKKASGITEKVVSNMDLSHLTDEDMLIIDMYTACEMKGPDNTYTEPNIMRLV EYVWAHNSEGAKMIFLKIEENAFSKPQPYLYIHCELYCCPGYTLSKMKEFDKSVCQLL SQSKSFQACGIGAWKLVPNVNYKK" CDS join(1257425..1257540,1258007..1258275,1258461..1258647, 1258695..1259552,1259596..1259695,1259740..1260004, 1260050..1260242,1260291..1260432,1260478..1260705, 1260833..1260916) /gene="Cbr-rsd-6" /locus_tag="CBG_04074" /standard_name="CBG04074" /product="Protein CBR-RSD-6" /note="C. briggsae CBR-RSD-6 protein; contains similarity to Pfam domain PF00567 Tudor domain contains similarity to Interpro domain IPR008191 (Maternal tudor protein)" /note="Predicted" /db_xref="InterPro:IPR002999" /db_xref="InterPro:IPR039117" /db_xref="UniProtKB/TrEMBL:A8WW54" /protein_id="CAP24863.1" /translation="MDCDELSDEDQLAVNIYSVCTAHGFQNSFSERNLIELVDGEYDR GYTESELRKLNKTLAQVLQNSEHFRSCGQGEWKAISAGGQMDNIHDSVADNKNAKKGG ARGRGGAVRGRGAAVPRNQFNRNGREGFRGFNNSRPPRGGLNQRGAAGTHGSSFRPQE NHSNSQPDYLANQRPLGRNGSSNASNQSSNYDGSFNRDNSRNSGYQENVRPQSPPRYR RSSRPPSPRSRNSNYYDRDSQRYNNDSRYFDNDRREYQNDKQSNYGGDQYGGNERYGG HDNGRRSPPPMRYDDTRYNDYRQNSYERQDRYNDGHGYNNGRPSSPQYRQYSPPRNGN GYRDDSGFRMNEQQFRHDSRDEHRGRTPPLPNRLHNSPPSDHRQRRSDSRNSNGTNFS QFSEENNDSPPASKFRTEYGNTQASVQTRDPITVGPSPANTNPSGSLNSNELLNRKLC KQLLKLKKGGQMDLTDFVYFLKDKGIIIPGDNYDEQENYLCALKESMPEFFKNMTIDR DESLIIWNETEMHQNKENEDEEDVNKPHRIDDAVWNYIKSISTNSFKMSDVILHLVQE TGEKAELIKSRVAHAMFYTHQGEYRYVPGEMDLVQKIERDLKGPSTDLFSAPLVHPAF SRPQTSLNVTFCFFRKFAHFAVRPVEAVEEFEKMEKEIKVSMQGANVKEQPNGGWQPR QGCLVRLHDSDIGSKWARGMIIKEENKELYRVYVLDFGYRLMVRIADMAMMPQRFLNI PPFCITCKVNATNEEHTELNTLNWKPEETNNSDRINVSNLQRGVPVEGIPTFTVDLAT ESFNGGMTNILDKLL" CDS complement(join(1261366..1261876,1262069..1262133, 1262178..1262407,1262458..1262764,1264305..1264553)) /gene="Cbr-tba-5" /locus_tag="CBG_04075" /standard_name="CBG04075" /product="Protein CBR-TBA-5" /note="C. briggsae CBR-TBA-5 protein; contains similarity to Pfam domains PF00091 (Tubulin/FtsZ family, GTPase domain) , PF03953 (Tubulin C-terminal domain) contains similarity to Interpro domains IPR002452 (Alpha tubulin), IPR002453 (Beta tubulin), IPR000217 (Tubulin), IPR003008 (Tubulin/FtsZ, GTPase domain), IPR004057 (Epsilon tubulin), IPR002967 (Delta tubulin), IPR018316 (Tubulin/FtsZ, 2-layer sandwich domain), IPR017975 (Tubulin, conserved site)" /note="Predicted" /db_xref="GOA:A8WW55" /db_xref="InterPro:IPR000217" /db_xref="InterPro:IPR002452" /db_xref="InterPro:IPR003008" /db_xref="InterPro:IPR008280" /db_xref="InterPro:IPR017975" /db_xref="InterPro:IPR018316" /db_xref="InterPro:IPR023123" /db_xref="InterPro:IPR036525" /db_xref="InterPro:IPR037103" /db_xref="UniProtKB/TrEMBL:A8WW55" /protein_id="CAP24864.2" /translation="MAPNGKMREIVSIHIGQAGVQIGNACWELYCLEHGITPGGLMPD DTSFGVEDQSYNTFFSETPAGKHVPRAIFVDLEPTVVDEVRTGTYAKLFHPEQLISGK EDAANNYARGHYTIGKELIDVVMDRVRRLTERCQSLQGFLIFHSFGGGTGSGFTSLVM ERLSIDYGKKAKLEFSIYPAPQISTSMVEPYNSLLTTHTTLEHSDCSFIMDNEAIYEI TKVNLGVRSPTYTHLNRLLAQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLV TYAPIISAEKAYHEQLSVSEITNSCFEPGSQMVKCDPRNGKYMACCLLYRGDVVPKDI NSAISTIKTKRAIQFVDWCPTGFKVGINYQPPTVVPGGDLAKLQRAVCMLSNTTAIQE AWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSFDPND DEY" CDS join(1273852..1273963,1274014..1274135,1275005..1275277, 1275329..1275562,1275615..1275890,1275936..1276175, 1276228..1276452) /gene="Cbr-cyp-36A1" /locus_tag="CBG_04076" /standard_name="CBG04076" /product="Protein CBR-CYP-36A1" /note="C. briggsae CBR-CYP-36A1 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR017972 (Cytochrome P450, conserved site), IPR002401 (Cytochrome P450, E-class, group I)" /note="Predicted" /db_xref="GOA:A8WW56" /db_xref="InterPro:IPR001128" /db_xref="InterPro:IPR002401" /db_xref="InterPro:IPR017972" /db_xref="InterPro:IPR036396" /db_xref="UniProtKB/TrEMBL:A8WW56" /protein_id="CAP24865.1" /translation="MLFAQLVILVVIVMLLLCRFANKIRGLPPGPTPWPFIGNTFQVP EDRIDIIINEFKKKYGGIFTLWLPFPTVVICDYDMLKRNIVRNGEAFSGRPDTFIMDM LVQGNYGLFFMENNWWKAQRRFTTHIFRSLGVGQAGTQDTIASLASGLVEKIDNQKDS SIELRPLLVHVVGNVIHKHLFGFTREWNETEILDFHVAINDVLEHFTSPKTQLLDAWP WLAYLDKPLSLGIPRTTRANDAIIQNLEQALAKHKSGINYDEEPSSYMDAFLKEMKIR AAETALEDGFTEKQLIVAIYDLYSAGMETIIIVLRFAFLYLINNPETQKRIHDELDKN VGRDRQVVMDDQKQLPYTCAFLQEVYRLGYVLPVNFLRCTLVDVEDCEGYRLPAGTRV IAQFQSVHVDKKHFPDPEHFNPDRFLNERGEYIRDDRINPFSMGKRSCLGENLARMEV FLYFCTLMQKFEWHTDGAFAPPIDVITSSLRAPKPFTIRASRR" CDS complement(join(1276703..1276825,1276866..1277321, 1277373..1278927,1278972..1279234,1279281..1279393, 1279442..1279646)) /gene="CBG04077" /locus_tag="CBG_04077" /standard_name="CBG04077" /product="Protein CBG04077" /note="contains similarity to Pfam domain PF02383 SacI homology domain contains similarity to Interpro domain IPR002013 (Synaptojanin, N-terminal)" /note="Predicted" /db_xref="GOA:A8WW57" /db_xref="InterPro:IPR002013" /db_xref="UniProtKB/TrEMBL:A8WW57" /protein_id="CAP24866.1" /translation="MPCRLRKITVYETKSRFYIIGCDSTGSRYNVLKIDRVDPKALIT GEPEYDYTREEILELLSTISDGSSVVYKSSSKKGSKSGLVERATNAFGILGVVRFVEG YYLIIITRAVAVATLGYHPVYKIVEVAMIPIAMDGISSSSEEQKYVKLFQSVDLSTDF YFSYSYDLSRTFQDNALRSNWDNNGHRKLEADDRFVWNSFLLEPLRKNLISERWFIEI VHGYVRQEYIFLPVGRISLTIIGRRSTKYAGTRFLKRGANPSGNVANYVETEQIVWDM ASSGNVANGRFSSFVQMRGSVPMRWSQDPSTRGVVGKPLILIDNHEPHAQTAASHFRE IRNKYGNPIIIMNLIKRNEKRRHEGVLHTQFLKNIEYLNQFLDSDEKLCYLSFDVARC NKAANAMPSINVLNVMEDLSMKSVLKNGWFQSFPLNEALKTSPREGFETLDVQYSKDG RFIIQHGICRTNCVDCLDRTNVAQFVIAKVALGCQLCAMGILDEPSLSLQSEVCRLLE DMFDEHGDTMALQYAGSQLVHSIKTYKKTAAFQERRRDVFQTLSRYYSNTFNDWDKQM AINLFLGVFRPKITSLKNLWDLTTDYNLHFPYPLKIRTDYCAWILTEKELDELVFLEY NENENQDGYVEIRSIEIEGRRGSEGSEYRTLQFSSDEDFRDYHKTYEFTSLDDRIGRL FSIENRAIQVDGINQEPTSHAQFLKLWKTTETKEKESKKPAKKEKEEKESDDEDDDEG ISTQWSDVVEAQQEWYDLVNQSGNIASTKTPISIVKKDIVPSRSRAKRSLLSTGLQFA KDIYHLDHLKTQPDERRYYEKYAITAFKCNVRDWESVKPTLLSEFKINPELEARRPTF FTADDCYRSEQPDVSGNSERFYTKSDNPLTTQCSNRDYETFSNYMEAP" CDS complement(join(1279918..1280836,1280890..1281368, 1281418..1281497,1281544..1281638,1281681..1281853, 1281901..1281994,1282043..1282068)) /gene="CBG04078" /locus_tag="CBG_04078" /standard_name="CBG04078" /product="Protein CBG04078" /note="contains similarity to Pfam domain PF01853 MOZ/SAS family contains similarity to Interpro domains IPR001965 (Zinc finger, PHD-type), IPR002717 (MOZ/SAS-like protein), IPR019786 (Zinc finger, PHD-type, conserved site)" /note="Predicted" /db_xref="GOA:A8WW58" /db_xref="InterPro:IPR001965" /db_xref="InterPro:IPR002717" /db_xref="InterPro:IPR011011" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR016181" /db_xref="InterPro:IPR019786" /db_xref="InterPro:IPR036388" /db_xref="UniProtKB/TrEMBL:A8WW58" /protein_id="CAP24867.1" /translation="MGKETPTLSKAKYKEANVSTSSPLKYSARQTPAPSSSQRNNERK RNQDETPSRGGLSIKRNRFEADGSSRRSRSVRAEQGTSQVKEEENTRGRRFLKHGEAA IPQCTMCKEEQKPEDEPLMECTCCKSKYHINKCLRYKDEIEASIRKSRRLICPRCIHC SACEEFIGDPENLECSQCCHAWHGSCAPKGHFLTNDFDSTWFCASCCRKRNIRILDSP EPTKPSRRKIKGYKPEKPISDIDFAIDINVDELAELQDKRDQISNLLAYEAGFSSEQP PNLEESKNKRKRKLDEDDFCYTGLKKNQPVPKVARIDKESFEQTKKDAYPKELETSEI SGGQIIHFGTGKACKAVYKSAYEEPLQSASDLYFCKFCIYTTHHKQDLIAHWENCTAR HPPGDEIYRDEDIAFFEVDGAVRTKYCQDLCLLAKLFISSKTLYAEVETFIFYVLCEI TTEGYVIVGYFSKEKNPSKNNNLSCLLVLPMVQKMGYGRLLIDMSYELSRLELKVGHP EHPLSDLGILAYRGYWRSSLLCYLRQHRKQDRISIRDISLATRMTPSDIVNQLLLDNI IALKGDNYTIKLGKRAFKFPISQCRRKCIDPLKLFWTPKPPTEPLDPNKLNSYAK" assembly_gap 1282544..1283154 /estimated_length=611 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1283558..1283726,1283775..1283895, 1283941..1284018,1284066..1284269,1284316..1284399, 1284448..1284660,1284705..1285034,1285082..1285220)) /gene="CBG04079" /locus_tag="CBG_04079" /standard_name="CBG04079" /product="Protein CBG04079" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WW59" /protein_id="CAP24868.1" /translation="MHRFFLLLFFTSNVFYSEAIRCRSCYSYNGQACVNAPDCESDVC LYEQLNAANGITHVLRTCYTKGKAYMFDDGVTMSNLNQCVTRTTRQGQYYVSLCTSQD MCNNDCRTEQQPIQPTLPPVNPPVPLGSVTCYDCVSTDGTDCQTSTCQGAYCLYERRL TNNQMYLRKLCLVEPVIQLDDETTVTNVDICEVRNTVSSRYFVKICNDLNLCNNYCNP GQSPPLPQRQPLVRCYDCEASNADCFTGSCEGNFCIFERQIRSGTSKTYFRKSCSSLP YAQYPDGSYTGVPNVCSTKVINDVEYNVKVCNTGNMCNSQCSLDSSAVTCTQCSAINS DDCSGGTCQGRFCIFVRSKSQLDPTKTTVKKSCATTSILSFPDNTPYTDVNHCQYKTL GSVQTVLKACNTTFCNTACSDVPLPTPSPQNSAVNFLILPSMFTVLVSMYYGS" CDS join(1286423..1286568,1286614..1286806,1286852..1286953) /gene="Cbr-rpl-25.2" /locus_tag="CBG_04080" /standard_name="CBG04080" /product="Protein CBR-RPL-25.2" /note="C. briggsae CBR-RPL-25.2 protein; contains similarity to Pfam domains PF03939 (Ribosomal protein L23, N-terminal domain) , PF00276 (Ribosomal protein L23) contains similarity to Interpro domains IPR001014 (Ribosomal protein L23/L25, conserved site), IPR005633 (Ribosomal protein L23/L25, N-terminal), IPR013025 (Ribosomal protein L25/L23)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WW60" /db_xref="InterPro:IPR001014" /db_xref="InterPro:IPR005633" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR012678" /db_xref="InterPro:IPR013025" /db_xref="UniProtKB/TrEMBL:A8WW60" /protein_id="CAP24869.1" /translation="MAPSSNKVGKALKAKKAVVKGNKTNVRKNVRTSVHFRRPKTLTT ERSPKFARKSAPNRSKLDAFNVIKHPHTTESSMKKIEDHNTLVFIVDEKANKYHIKSA VQSLYNVKAVKVNTLITPLQQKKAFVRLASDYDALDVANKIGFI" CDS complement(join(1287184..1287202,1287246..1287437, 1287481..1287617,1287691..1287915,1288109..1288313, 1288429..1288570,1288619..1288787,1288837..1289044, 1289088..1289236,1289279..1289359,1289720..1289816, 1289861..1290010,1290063..1290136,1290203..1290285, 1290330..1290375)) /gene="Cbr-cep-1" /locus_tag="CBG_04081" /standard_name="CBG04081" /product="Protein CBR-CEP-1" /note="C. briggsae CBR-CEP-1 protein; contains similarity to Pfam domain PF09287 CEP-1, DNA binding contains similarity to Interpro domain IPR015367 (Transcription factor CEP-1, DNA-binding domain)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WW61" /db_xref="InterPro:IPR008967" /db_xref="InterPro:IPR011615" /db_xref="InterPro:IPR012346" /db_xref="InterPro:IPR015367" /db_xref="UniProtKB/Swiss-Prot:A8WW61" /protein_id="CAP24870.2" /translation="MNTEATDSQLSVLIKKEKIVPDSQEVDGNTTRELGDNTLDEIIN GQFSPLMSQNSENELEKHLRSTPGIEGVFESLLHNEIQEPDITHLSLMSTHPSESGRQ PELIKTRTRTPRIVNDGPLQQTSRSELLDLNALFDTEESALMNQSIESETTLTQFLGG SQPIDYLRERTKEEQDKRNQMRQEEKLIKKMQKAQVEKARSEMFSERNHEFEPMECDN DEEDVFRAVKEDSSNREKEEEWLTFEVKKERASKVSDFEFETVVNDGIYLWAKMKCNI PFIVKWNVSSCHKQLFLKVRLVNYMASDNIENSIRVPSNLAKCHNHRMTEEKTPRESF FYVVKSGEHWTPQINSKKDQCFVAKLAPGTTQVLFDLIFKCQRSCLDLAERRKRMCLA VFLEDENGNELLHDVIKQLLIVGYPRRDWKNFCEKRGDFKFSEKSLLVQTTNNIFADQ SSLHSGPSSPEKVTDTSQMFQSTSSSSRKRAASDVKFVASAVPSSDQQSYPMRLHGCE SRRMEMSFYRKFKENEDSLSNKRPRSQYGLQRQVKLSEKEYSKFVAFFAKEGENEISK YASAHCLTPAQASRLDPSDKIEKFLAFVGDESAADNFRKHGLFTMLDLDKYFQVYDSA FETIGVDSSKMEKYYDLFLHYHRVQENIRYNQPK" CDS join(1291460..1291586,1291900..1292137,1292183..1292698, 1292749..1293238,1293289..1293585,1293632..1293757, 1293807..1294425,1294472..1294868,1295024..1295122, 1295737..1296172,1297894..1298073,1298186..1298470) /gene="CBG04082" /locus_tag="CBG_04082" /standard_name="CBG04082" /product="Protein CBG04082" /note="contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase) , PF00271 (Helicase conserved C-terminal domain) , PF04408 (Helicase associated domain (HA2)) , PF00069 (Protein kinase domain) , PF01424 (R3H domain) contains similarity to Interpro domains IPR011545 (DNA/RNA helicase, DEAD/DEAH box type, N-terminal), IPR002290 (Serine/threonine- / dual-specificity protein kinase, catalytic domain), IPR001374 (Single-stranded nucleic acid binding R3H), IPR000719 (Protein kinase, catalytic domain), IPR007502 (Helicase-associated domain), IPR018247 (EF-Hand 1, calcium-binding site), IPR014001 (DEAD-like helicase), IPR001650 (Helicase, C-terminal)" /note="Predicted" /db_xref="GOA:A8WW62" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001374" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR007502" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR011545" /db_xref="InterPro:IPR014001" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR036867" /db_xref="UniProtKB/TrEMBL:A8WW62" /protein_id="CAP24871.1" /translation="MHITLDVMSREQRKVMHEVAQHNGLSTRSTGKEPNRCIILSYLL KSIDDNEVVIISGGTGCGKTTQVPQFILDDAAEKKKKVRIMVTQPRRLAAISISERVA KERGESLGHTVGYKIRLENRSSEKTLLTYCTTGVLLRMLTSDPIASGITHIIMDEIHE REINTDYLLIALRECLKHRKDLKVILMSATIEGNMQLFSSYFQNQSVDVLRIESRTFD VKTFYIDQILAMSGYQPPEHQVFFSGVEFKTEEWEEEIKEIQKEDKRSNNSETKNGSV ATNTQIKKTSGSNTCAEGVVNQQRGINSVTTAVGNKWSSGQYTCSDGEIIDEKTMGLF FKSTGCPKIPALTVEFLPDSRDSVYVNGVRYNTDKTQSQVLLEKQKLDRNSMPEYPVM YRLDETHSTSRLAIPEPTTLCSESVQITQELFADASPTSIEKTNTPSTASSGLAKFST DDFGKFGEKQRISQMLEQRFRSELKSVIPQRTSHYDTDMDKLVERIDFAKLRFAEKYD MFYGTDFENSIDHHLLDHVIQYLADSPVFGTILVFLPGFDDIQLMMGKIDKWKLGLKN MKHVSVIPLHSQMHSINHSDVFKPVTSDIRKIILATNIAEASITIEDVIFVVDTGKVK EKSYNHEAKLSTLSVKPIARSNAEQRSGRAGRVRNGYCIRLYSEAKFNSMPETQMAEM KRAAIYDVTLHAKIFAPNCMKISEFLALAPEPPEEKSIIQSMAFLEQLGAFYRPNNDS GQNEDENENEETTEEVDPELTDLGRLMARLPLDPQLSRMLLFGLSLKCLAPIVNLVAL LASREPYVLAQSDERERQSKMKFEMAEQDFSDHLMYIRLCTAFCSKVTYKEQNDFCRE HLLNLATMKMVQGTRHQLLQELVRAKVIVAPEKDIMMLLSDSNYNAHSNSWTMVQAAI AAGCYPSIGVSTADSNLKKVQTLNVSHDIRSIALNEDCNCDPSSYGSNFHWSNQNQAS NQYVNRNQRNNSTAQPTKTLNSDSHFTARIPPENGYLPNINTSNHQQITSSIGNSVPE TQSAASSSIYHHHDQNWTSNPHSYHTNEYGYDYGSNSVYQYGGNQQLGNAQQYTSFNS SNPGSFMSSMGGYTPRGGRGRTGNCSKPENLFVDQNDCLRIGDFGLARFSDPDVAMTP ESVSLWYRPIEILLGATNHTTAVDIWSAGINKIIKVLGKPTTDEWPTLNDLPAMQYVT LDGSDTTNFEQAVPQASEKSLNIIRNMIRFDPTRRFTATQLLQHDYFGSEDSSIRNTS MDDPEFP" assembly_gap 1298743..1306958 /estimated_length=8216 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS join(1308706..1308941,1308989..1309175,1309246..1309458) /gene="CBG04083" /locus_tag="CBG_04083" /standard_name="CBG04083" /product="Protein CBG04083" /note="contains similarity to Interpro domain IPR015880 (Zinc finger, C2H2-like)" /note="Predicted" /db_xref="GOA:A8WW63" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR036236" /db_xref="UniProtKB/TrEMBL:A8WW63" /protein_id="CAP24872.2" /translation="MSKDWDTIQPAAQSPLPYSTISELMKTSAMFNGSKTEKPTRRRQ NETFKCHVCESYIKAYNFDYYKRSNHAIIHTGLQRYICPVEGCGAKTRHRSNMVVHAR TAHGLTGKIEIENCLLPHEEDELKRTVILCFPEMTNTVLRPPMKNKYSETHNKTVKLD LNTSKNVYNLNIHILLLSEINARCGRENNGGRSLAPTEITLLYFSNYCTRL" CDS join(1313747..1313942,1315474..1315895,1316787..1316975, 1317022..1318168,1318216..1318580,1318638..1319297, 1319345..1319476,1319524..1319838,1319882..1319992) /gene="Cbr-abts-1" /locus_tag="CBG_04085" /standard_name="CBG04085" /product="Protein CBR-ABTS-1" /note="C. briggsae CBR-ABTS-1 protein; contains similarity to Pfam domains PF07565 (Band 3 cytoplasmic domain) , PF00955 (HCO3- transporter family) contains similarity to Interpro domains IPR003020 (Bicarbonate transporter, eukaryotic), IPR003024 (Sodium bicarbonate cotransporter), IPR011531 (Bicarbonate transporter, C-terminal), IPR013769 (Bicarbonate transporter, cytoplasmic)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WW64" /db_xref="InterPro:IPR003020" /db_xref="InterPro:IPR003024" /db_xref="InterPro:IPR011531" /db_xref="InterPro:IPR013769" /db_xref="InterPro:IPR016152" /db_xref="UniProtKB/TrEMBL:A8WW64" /protein_id="CAP24873.2" /translation="MDDEPDESPSRIARSRSCEPPGSSSRSRESRGSLWMSMGVHVEN SRRRRMSKARRESQSIELSSLAPGTRVMFLLKEKENTPALFTEMGELNNDEWRETARW VKFEEDVEQGGNRWSKPHVATLSLHSLFQLRSCIMNGLFLNDLSETDIPSIFSKFQRC YLFPKSLYYSSDAVIENLVKSGDLPAENREELREILLRKHVHQYEQAKKNGAGGEKGG FLSTVRSISDIGKSFSHGKNLSKIEEKPEGPVTSQTAGAPSGSSNQLTLPTVESVPKD ISNEEASKGNLHFLKKLPVGVEASNVLIGEVDFLTRHICCFIRLKNANQLGDLTEVPV PTRFIFLLLGPTGHGQQYREIGRAIATLMADEIFHDVAYGARDVDDLLDGIDEFLDQV TVLPPGEWDPNIRIEPPTKLPSQEKRKQIGKELLVEPSSHKPAKKVIEEEEIHSHGDD PALKRTGKLFGGLILDIKRKAPHFVSDFTDAFNLQCLASICFMYFGLLAPIVTFGGLL EEATHQRMAAMENLFGGALCGVIYHFFAGQPLTIVGSTGPVLVFETIVYDFCHRFGIQ YLSFRFWVHVWTALIILIMVITDASSLVSFITRFTEESFATLIAVIFIYEAIMKLVKI KGQLDMINYSRDYVEGGFCSCVAPLKKATVSVEHAKLIIKDLGLPIPFNETTIDYSAA NLTDCRTIGGDFDGTTCFPLYDKLLMSILLTVGTFFLATTLKKMRNSCYFPSRVRQLL SDFAVMIAIVTMTMVDISVGVNTPKLNVPSTFRPTWEGRGWFIYPFDGNEWWTAPLAL LPALLACILIFMDQQITTVIVNRKENKLKKGCGYHLDLLVLSVSILMVGFLGLPIYVA ATVLSINHINSLKVESECKAPGEVAQFVGVREQRVTGIVTFLIIGLSVLATNILGRIP MPVLYGVFLYMGISALGGIQLFDRTLLLFMPMKYQPDTIYIRHVPIKKIHLFTAFQIG CLALLWVIKSIKSTSILFPIMLVVMVAIRKMMEKAFTTTDLKYLDDPMPDFHLRKKED AKRRQSEGEAVEIEFDNENQATIHAVKTEAHLHIPMASGNVIKIPLAAIQEPSHSINL TKEVNNSGMWKHISSADSKNSLVRDVPASSEPTTSRDAPIEQPEDDDDPIMIKVVIRP SPHTSTSNLTENTPLLKEEPKESSTNPDEPKV" CDS complement(join(1320454..1320628,1320679..1321406, 1321459..1322010)) /gene="Cbr-mei-1" /locus_tag="CBG_04086" /standard_name="CBG04086" /product="Protein CBR-MEI-1" /note="C. briggsae CBR-MEI-1 protein; contains similarity to Pfam domains PF00004 (ATPase family associated with various cellular activities (AAA)) , PF05496 (Holliday junction DNA helicase ruvB N-terminus) contains similarity to Interpro domains IPR003959 (ATPase, AAA-type, core), IPR003960 (ATPase, AAA-type, conserved site), IPR003593 (ATPase, AAA+ type, core), IPR008824 (DNA helicase, Holliday junction RuvB type, N-terminal)" /note="Predicted" /db_xref="GOA:A8WW65" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR003960" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR028596" /db_xref="InterPro:IPR041569" /db_xref="UniProtKB/TrEMBL:A8WW65" /protein_id="CAP24874.2" /translation="MIGDAQTITGYFERAQVAKTMVDDGRWSEAGDLLRQLLTDVRSY KISTSNREDVESKNVSKLFFLHYMSFLQAFLKALEASMKLVLQNARDEDELHDAMTRQ SGSPEPPADPDVWSKPSPPLPTSSKYNAKKGGTVPKTQPSKSASSAASYAPSAADTKP ANPSQGILPPNSAGESFDASSYDSYIVQAVRGTMATQTENTMSLDDIIGMHDVKQVLH EAVTLPLLVPEFFRGLRSPWKAMVLAGPPGTGKTLIARAIASESSSTFFTVSSTDLSS KWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQRGNSGEHEASRRVKSEFLVQMD GAQHKFDERRVFVLAATNIPWELDEALRRRFEKRIFIPLPDLDARKKLIETSMMGTPQ SNEINYDELAAKTEGFSGADVVSLCRTAAINVLRRYDTKSLRGGELTAAMESLKTEPV RNCDFEAALQAVSSSVDPDTMLKCKEWCDSFGAM" CDS join(1323536..1324216,1324261..1324587,1324629..1324762, 1324808..1325438,1325488..1325559) /gene="Cbr-npp-2" /locus_tag="CBG_04087" /standard_name="CBG04087" /product="Protein CBR-NPP-2" /note="C. briggsae CBR-NPP-2 protein; contains similarity to Pfam domain PF07575 Nup85 Nucleoporin contains similarity to Interpro domain IPR011502 (Nucleoporin Nup85-like)" /note="Predicted" /db_xref="GOA:A8WW66" /db_xref="InterPro:IPR011502" /db_xref="UniProtKB/TrEMBL:A8WW66" /protein_id="CAP24875.2" /translation="MTDVGRRYGVAISDSSTVFAYLTDKKDAKKKGLSIFIILFQCIN LGDMNIVLVENVSQKRQILATPNIRRLVIEMYSVFDKCQKGSSPDRCLDTATSCTFSR AYRSVLYNAAIAHSGTDFMTDFALWSLYEKLWFGRGDSSICADMVSWANETFTFSKEA MDTAADDLTPGKAPSEEFWRGVAITLLSSNFNDCIELLVLLGKNPELEAFIDVLSFFN PENLSDEALSDTVNEWKDLMRENLASGKYGNNENLKYLTKLLLGDDRYLQSVAPRVLQ HWWHFLPFFVLVKNPFAGHAELMDLAIECRSWFVGEEEENAREKDVFWCLIAKDDNNF LQLISSNPWLAVHLVDLIQKSTLDPEFEVMRRMQMLDYASVLISHSPLWEIGFGYLIA CGTEGLLRLESHIEGMHIEDDEMAEQLLEICESNRLEDSKSCVTNTMTIRYLKQNEWS AALSWALKTGSKKTIDWTVSRIVSSSSKDELAALRVLSSITNNSVLSLPSLTFLYSYQ RFVKMMHSGDVLDCVQNLIPLIMMPDVPTQYYYDLFGYLITIIKEDGRTGIPFSKEIL YELSTFLSTFTLDKSRTLNDSYMRKVKTLKKMVLLKLADSVAKGIGCT" CDS join(1325819..1325904,1326035..1326122,1326177..1326248, 1326310..1326466,1326512..1326703,1327061..1327250, 1327294..1327435) /gene="Cbr-kin-10" /locus_tag="CBG_04088" /standard_name="CBG04088" /product="Protein CBR-KIN-10" /note="C. briggsae CBR-KIN-10 protein; contains similarity to Pfam domain PF01214 Casein kinase II regulatory subunit contains similarity to Interpro domain IPR000704 (Casein kinase II, regulatory subunit)" /note="Partially confirmed by transcript evidence" /db_xref="GOA:A8WW67" /db_xref="InterPro:IPR000704" /db_xref="InterPro:IPR016149" /db_xref="InterPro:IPR035991" /db_xref="UniProtKB/TrEMBL:A8WW67" /protein_id="CAP24876.2" /translation="MHSKILGPVLFRQLSQQLAFSAVRLTFTRQLCALRATQPVIEVN ATASARWRQLDSTSEESGSQSGQSASLSGSNVMSSSEEVSWITWFCGLRGNEFFCEVD EEYIQDRFNLTGLNEQVPKYRQALDMILDLEPEDDIEDNATNTDLVEQAAEMLYGLIH ARYILTNRGISQMVEKWRDNDFGVCPRVYCENQPMLPIGLSDVPGEAMVKLYCPRCND VFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPVTQFVPKLYGFKIHPVAYGGQ DGNSSTVNASSNAQSNAAPTGQPAGQFNNYGL" CDS join(1330010..1330069,1330121..1330252,1330301..1330428, 1330475..1330652,1330703..1330806,1330852..1330964, 1331250..1331385,1331430..1331505,1332124..1332237) /gene="CBG04089" /locus_tag="CBG_04089" /standard_name="CBG04089" /product="Protein CBG04089" /note="contains similarity to Pfam domain PF03676 Uncharacterised protein family (UPF0183) contains similarity to Interpro domain IPR005373 (Uncharacterised protein family UPF0183)" /note="Predicted" /db_xref="GOA:A8WW68" /db_xref="InterPro:IPR005373" /db_xref="InterPro:IPR039156" /db_xref="UniProtKB/TrEMBL:A8WW68" /protein_id="CAP24877.2" /translation="MNGKQQVTKNPSTENDLSFTVVPDVGLKNSQLEFVLGMPINQCI SMMQQHPRTLTHVELKYSKKDPCYRDIIIYIGSTGIKLYFDGHSQLIKLIEVDNLSNI SLTYNDTIFSDPTNMATLDRVNEFFGSTHPGSYDDKHNIYVQSWPGLSFCFPTAAGDN SNLEVRPGFGGNLRSLKYDANAQPKLTKMSIYRGQNPSEPEQVDTPFSCYCGQNRTRK IEAIWENGSIVGIDIEFDTQNGRIVDGEYDVSTYKRHIYFGDSVADVQSVLGAPTKVF YKSDDKMKIHRGLHKETLYGPPNFFFNYFVMGLSLRSDIHVYTYSRSCTDPSSCFPTK NPVNVENCSSFS" CDS complement(join(1332951..1333247,1333504..1333611, 1333661..1333789,1333932..1334116,1334161..1334992, 1335107..1335304)) /gene="Cbr-dma-1" /locus_tag="CBG_04090" /standard_name="CBG04090" /product="Protein CBR-DMA-1" /note="C. briggsae CBR-DMA-1 protein; contains similarity to Pfam domains PF00560 (Leucine Rich Repeat) (5), PF12799 (Leucine Rich repeats (2 copies)) contains similarity to Interpro domains IPR000483 (Cysteine-rich flanking region, C-terminal), IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)" /note="Predicted" /db_xref="GOA:A8WW69" /db_xref="InterPro:IPR000483" /db_xref="InterPro:IPR001611" /db_xref="InterPro:IPR003591" /db_xref="InterPro:IPR032675" /db_xref="UniProtKB/TrEMBL:A8WW69" /protein_id="CAP24878.2" /translation="MFCYVFFLWSFFVTSSFALPSCPSLCECDKKDSSWNVYCRKAVI NDTVYAEVLNQLPLTLRSLHIQPPTNRGGSNKLRWNDNINRFAQLRVLRLINCQIPAM SRSIRLPSLEVLDLRSNNIEHATMSNFGGMPKLRVLDLSSNHLNILPTGVFTYLRQLR SLSLSNNTISDLSTNLLRGLNSLRVLRLDRNPIPIEQINDLFTDISQLDELYLNHCNL SSISLLALDRIPQLRQLGIGGNDLKHVPSKEMRSLSQLSVLDLSYNSIQEIPACALCN TNVSKLDLSNNLLGIAKGSQFNEDAFRNIPLRHLDLSFNHLDEFDSKWLGWAQEELTS IALSGNLMKHFDEVWTHSLKSLVHLEMAYNHIKYIPVQLPTRYYHLTSFNISGNELSY LPDNINNLLPNVKALDISTNRFHTFSHTDLAFLNNLDQVYVDGNPWDCSCAIQGLQVH MRDRYAMRHILNYENVRCATPSLVEGHSVLAITDMLILLAGVLLFAAFLLMILGCIYL LRERQYKGSYVTREHSRTPLTMANTHSCSSSTNDTHGPLSPPFDPFLVSTETFKATPP LIPPISPKPGSSYFGI" CDS join(1335962..1335999,1338055..1338067,1338994..1339076, 1339297..1339363,1339515..1339700) /gene="CBG04092" /locus_tag="CBG_04092" /standard_name="CBG04092" /product="Protein CBG04092" /note="contains similarity to Pfam domain PF03676 Uncharacterised protein family (UPF0183) contains similarity to Interpro domain IPR005373 (Uncharacterised protein family UPF0183)" /note="Predicted" /db_xref="GOA:A8WW70" /db_xref="InterPro:IPR005373" /db_xref="InterPro:IPR039156" /db_xref="UniProtKB/TrEMBL:A8WW70" /protein_id="CAP24879.2" /translation="MVAFFERGAKIIEQGPVDVLFDFVSKRVIKFVLHTNAPGHCDFG IYSRCNFSILLKDNQYEICTDSKFDEFSHEFMGDSSSPRPVVLSRHEQQPFGSSFCYG TKQIIVEVMENGFLSSLSIYDGSKDK" CDS complement(join(1340061..1340137,1340624..1340755, 1340800..1341104,1343194..1343299,1343505..1343589, 1343642..1343744,1343819..1344036,1344096..1344340, 1344390..1344699,1344750..1344767)) /gene="CBG04095" /locus_tag="CBG_04095" /standard_name="CBG04095" /product="Protein CBG04095" /note="contains similarity to Interpro domain IPR001507 (Zona pellucida sperm-binding protein)" /note="Predicted" /db_xref="GOA:E3CTX0" /db_xref="InterPro:IPR001507" /db_xref="UniProtKB/TrEMBL:E3CTX0" /protein_id="CBX33093.1" /translation="MKSLRSIDPRGMYYGITVVVSFHPLFITKVDQAYHVKCFFEEAN KGLTAELGVSMIPTTELEARHGIPGCSYSIHSSTIDELDAGRPAGQPIQFARVGDRVL HQWHCNDQMYGVLINNCYVTDGFGKKSDVIDDKGCPIDPILITGIRYSSDLQRAYAES SVFKFADKPGVWFFCQVQMCMKKHGMCDGITPPSCGSMSRLISAPGGDDNGFEEEKPQ RQTKKPPVQDYDYENEKPVKTTRALPRKTTPSNDYDYDNESPKLHSPNSHSYNSVTPP LDYETVTLTAFSPPINPATVGTESVSKTFETEDDLASSVTSEPKSKKIGKSDYNDYDE VTIPPNLTDLLANLPDDISSDSIQKMLRDSVDNPKALLAEFGKLMKSKKMKSDSKKYR SRNLRELKPGDLRSGEKIDQIEVDWTSTRRRDVPSIPEFDGNTKYDKPMLAGQLLIFD LDEEPPSDVGMQKASKSAASACSISKDGLLAVFAGFGALLAALIAIIAFLSLRLRSQL SPIGQTTPIFKQFQCAQKRFFESS" assembly_gap 1345301..1345594 /estimated_length=294 /gap_type="within scaffold" /linkage_evidence="unspecified" CDS complement(join(1345812..1345894,1345944..1346019, 1346084..1346149,1346230..1346389,1346506..1346635, 1346680..1346844,1346893..1346970,1347188..1347262, 1349407..1349458,1350560..1350642,1351181..1351250)) /gene="CBG04096" /locus_tag="CBG_04096" /standard_name="CBG04096" /product="Protein CBG04096" /note="Predicted" /db_xref="UniProtKB/TrEMBL:A8WW73" /protein_id="CAP24882.1" /translation="MFHMLLLKTAGHLRLFKGAAQSPNAATSSTCDMAVRGGKCQYEL PCDETRYSVRVYKEEDKKWRRRRWGYGLVTEECPTHAVGCRIRAKKDHIEWYELSRLY DRNQLVCVYPEEYKSMTGCMRKPSGSVRCWCGGRENCNDPETSRDLYEAFTEGDNDAV EKISEWLKSEKDESSWKKFTTTEEVPTTTTRITTTPRRTTVRKTTTTTTTTTLTTTQK PTTTTTTTSPRPTPKKSTKRIGSLKNPTTSVPPLFPKDASKARVINIVDIRDKAVPLP NDDISLDDTFEETRKKLEKEMKEEDERLREMLADEEEEENSNDISDIEDEDVTAEEQR EEERERYRMER" assembly_gap 1347288..1347493 /estimated_length=206 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1351452..1351760 /estimated_length=309 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1352848..1353847 /estimated_length=1000 /gap_type="between scaffolds" CDS join(1355926..1356060,1356372..1356644,1356692..1356776, 1356830..1356988,1357038..1357192,1358420..1358583, 1358965..1359074,1359126..1359223,1359269..1359373) /gene="CBG04097" /locus_tag="CBG_04097" /standard_name="CBG04097" /product="Protein CBG04097" /note="contains similarity to Pfam domain PF00788 Ras association (RalGDS/AF-6) domain contains similarity to Interpro domain IPR000159 (Ras-association)" /note="Predicted" /db_xref="GOA:A8WW74" /db_xref="InterPro:IPR000159" /db_xref="InterPro:IPR008984" /db_xref="InterPro:IPR029071" /db_xref="UniProtKB/TrEMBL:A8WW74" /protein_id="CAP24883.1" /translation="MTIVSEREQLACLVQQWNENRLDLFHLSYPTEDLEVEGVMRFYF QDGGEKVLTKCVRVSSTATTRAVVDALSEKFLPDLKMLSNDTYSLWEVHENGEERRLG EEEKPLVVQLQWHKDDREGRFLLKKDKSAPVPLNTLQEADQKGSRFAKKKDKEPKKKH QKEFVHVNGGREEAQSQDDIYKQVPFNTFTRTISNPEAVMRKRREKKLETKLKEMTFG GSLKVYGGEIVPTRPYVSILAEINETADRILIAALEKYGLEQSKDDFILVEVSNDDER KSMSDLRDVDGRPIPPTESPLFEMTARGNGEHGFDSFLAIKRKPHDYQVPSTSVPSSV TLPMSPLTSSFPTQTNGLPMLIVMGNDGQLSTHWISLHEGVTEVGSDSQMSNFSQHNI YLDGHDIRGRHAAIAFMEGVVTLTPSTRDAYIEVR" CONTIG join(CAAC03000511.1:1..3734,gap(67),CAAC03000512.1:1..1205,gap(79), CAAC03000513.1:1..20763,gap(10),CAAC03000514.1:1..2893,gap(427), CAAC03000515.1:1..29615,gap(165),CAAC03000516.1:1..30643,gap(312), CAAC03000517.1:1..5932,gap(337),CAAC03000518.1:1..9089,gap(10), CAAC03000519.1:1..7893,gap(586),CAAC03000520.1:1..16126,gap(285), CAAC03000521.1:1..11056,gap(534),CAAC03000522.1:1..49564,gap(175), CAAC03000523.1:1..2706,complement(AC084590.1:28977..32005), CAAC03000524.1:1177..31274,complement(AC084676.1:38980..40005), CAAC03000525.1:539..29003,complement(AC084676.1:9477..10505), CAAC03000526.1:99..2064,complement(AC084676.1:6972..7510), CAAC03000527.1:187..17682,gap(10),CAAC03000528.1:1..6907,gap(150), CAAC03000529.1:1..2077,gap(2203),CAAC03000530.1:1..14704,gap(10), CAAC03000531.1:1..2730,gap(1000),CAAC03000532.1:1..2271,gap(404), CAAC03000533.1:1..1029,gap(400),CAAC03000534.1:1..119220,gap(296), CAAC03000535.1:1..3617,gap(61),CAAC03000536.1:1..1578,gap(467), CAAC03000537.1:1..40306,gap(116),CAAC03000538.1:1..18864,gap(617), CAAC03000539.1:1..6685,gap(249),CAAC03000540.1:1..15290,gap(1000), complement(CAAC03000823.1:1..18603),gap(7507),complement (CAAC03000822.1:1..63676),gap(663),complement (CAAC03000821.1:1..14717),gap(435),complement (CAAC03000820.1:1..23966),gap(359),complement (CAAC03000819.1:1..8485),gap(10),complement(CAAC03000818.1:1..1253) ,gap(1054),complement(CAAC03000817.1:1..30204),gap(351),complement (CAAC03000816.1:1..43805),gap(4501),complement (CAAC03000815.1:1..69818),gap(201),complement (CAAC03000814.1:1..10866),gap(282),complement (CAAC03000813.1:1..47809),gap(171),complement (CAAC03000812.1:1..63663),gap(877),complement (CAAC03000811.1:1..2988),gap(10),complement(CAAC03000810.1:1..3148) ,gap(401),complement(CAAC03000809.1:1..6168),gap(67),complement (CAAC03000808.1:1..61497),gap(84),complement (CAAC03000807.1:1181..61067),complement(AC084601.1:3471..5005), complement(CAAC03000806.1:1..52041),gap(403),complement (CAAC03000805.1:1..23284),gap(10),complement (CAAC03000804.1:1..16868),gap(81),complement (CAAC03000803.1:1..120680),gap(611),complement (CAAC03000802.1:1..15588),gap(8216),complement (CAAC03000801.1:1..38342),gap(294),complement (CAAC03000800.1:1..1693),gap(206),complement (CAAC03000799.1:1..3958),gap(309),complement (CAAC03000798.1:1..1087),gap(1000),complement (CAAC03004224.1:1..6123)) //