LOCUS       GQ504750                2274 bp    cRNA    linear   VRL 25-AUG-2009
DEFINITION  Influenza A virus (A/Nanjing/1/2009(H1N1)) segment 2 polymerase PB1
            (PB1) gene, complete cds; and PB1-F2 gene, complete sequence.
ACCESSION   GQ504750
VERSION     GQ504750.1
DBLINK      BioProject: PRJNA37813
KEYWORDS    .
SOURCE      Influenza A virus (A/Nanjing/1/2009(H1N1))
  ORGANISM  Influenza A virus (A/Nanjing/1/2009(H1N1))
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Insthoviricetes; Articulavirales;
            Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
            influenzae.
REFERENCE   1  (bases 1 to 2274)
  AUTHORS   Zhao,K., Cui,L., Shan,J., Qi,X., Shi,Z., Ge,Y. and Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2009) Jiangsu Provincial Center for Disease
            Prevention and Control, Institute of Microbiology, 172 Jiangsu
            Road, Nanjing, Jiangsu 210009, China
COMMENT     Swine influenza A (H1N1) virus isolated during human swine flu
            outbreak of 2009.
FEATURES             Location/Qualifiers
     source          1..2274
                     /organism="Influenza A virus (A/Nanjing/1/2009(H1N1))"
                     /mol_type="viral cRNA"
                     /strain="A/Nanjing/1/2009"
                     /serotype="H1N1"
                     /host="Homo sapiens"
                     /db_xref="taxon:653688"
                     /segment="2"
                     /geo_loc_name="China"
                     /collection_date="18-Jun-2009"
                     /note="lineage: swl"
     gene            1..2274
                     /gene="PB1"
     CDS             1..2274
                     /gene="PB1"
                     /codon_start=1
                     /product="polymerase PB1"
                     /protein_id="ACU87262.1"
                     /translation="MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVN
                     RTHQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGI
                     FENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANES
                     GRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYL
                     IRALTLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGN
                     EKKAKLANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFR
                     NILSMAPIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKI
                     RPLLIDGTASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALI
                     VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSME
                     LPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDT
                     QIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRL
                     CNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAVATAHSWIPKRNRSILNTSQRGI
                     LEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEF
                     SEIMKICSTIEELRRQK"
     gene            95..367
                     /gene="PB1-F2"
     misc_feature    95..367
                     /gene="PB1-F2"
                     /note="nonfunctional PB1-F2 protein due to mutation"
BASE COUNT          811 a          439 c          517 g          507 t
ORIGIN      
        1 atggatgtca atccgactct acttttccta aaaattccag cgcaaaatgc cataagcacc
       61 acattccctt atactggaga tcctccatac agccatggaa caggaacagg atacaccatg
      121 gacacagtaa acagaacaca ccaatactca gaaaagggaa agtggacgac aaacacagag
      181 actggtgcac cccagctcaa cccgattgat ggaccactac ctgaggataa tgaaccaagt
      241 gggtatgcac aaacagactg tgttctagag gctatggctt tccttgaaga atcccaccca
      301 ggaatatttg agaattcatg ccttgaaaca atggaagttg ttcaacaaac aagggtagat
      361 aaactaactc aaggtcgcca gacttatgat tggacattaa acagaaatca accggcagca
      421 actgcattgg ccaacaccat agaagtcttt agatcgaatg gcctaacagc taatgagtca
      481 ggaaggctaa tagatttctt aaaggatgta atggaatcaa tgaacaaaga ggaaatagag
      541 ataacaaccc actttcaaag aaaaaggaga gtaagagaca acatgaccaa gaagatggtc
      601 acgcaaagaa caatagggaa gaaaaaacaa agactgaata agagaggcta tctaataaga
      661 gcactgacat taaatacgat gaccaaagat gcagagagag gcaagttaaa aagaagggct
      721 atcgcaacac ctgggatgca gattagaggt ttcgtatact ttgttgaaac tttagctagg
      781 agcatttgcg aaaagcttga acagtctggg ctcccagtag ggggcaatga aaagaaggcc
      841 aaactggcaa atgttgtgag aaagatgatg actaattcac aagacacaga gatttctttc
      901 acaatcactg gggacaacac taagtggaat gaaaatcaaa atcctcgaat gttcctggcg
      961 atgattacat atatcaccag aaatcaaccc gagtggttca gaaacatcct gagcatggca
     1021 cccataatgt tctcaaacaa aatggcaaga ctagggaaag ggtacatgtt cgagagtaaa
     1081 agaatgaaga ttcgaacaca aataccagca gaaatgctag caagcattga cctgaagtac
     1141 ttcaatgaat caacaaagaa gaaaattgag aaaataaggc ctcttctaat agatggcaca
     1201 gcatcactga gtcctgggat gatgatgggc atgttcaaca tgctaagtac ggtcttggga
     1261 gtctcgatac tgaatcttgg acaaaagaaa tacaccaaga caatatactg gtgggatggg
     1321 ctccaatcat ccgacgattt tgctctcata gtgaatgcac caaaccatga gggaatacaa
     1381 gcaggagtgg acagattcta caggacctgc aagttagtgg gaatcaacat gagcaaaaag
     1441 aagtcctata taaataagac agggacattt gaattcacaa gcttttttta tcgctatgga
     1501 tttgtggcta attttagcat ggagctaccc agctttggag tgtctggagt aaatgaatca
     1561 gctgacatga gtattggagt aacagtgata aagaacaaca tgataaacaa tgaccttgga
     1621 cctgcaacgg cccagatggc tcttcaattg ttcatcaaag actacagata cacatatagg
     1681 tgccataggg gagacacaca aattcagacg agaagatcat ttgagttaaa gaagctgtgg
     1741 gatcaaaccc aatcaaaggt agggctatta gtatcagatg gaggaccaaa cttatacaat
     1801 atacggaatc ttcacattcc tgaagtctgc ttaaaatggg agctaatgga tgatgattat
     1861 cggggaagac tttgtaatcc cctgaatccc tttgtcagtc ataaagagat tgattctgta
     1921 aacaatgctg tggtaatgcc agcccatggt ccagccaaaa gcatggaata tgatgccgtt
     1981 gcaactgcac attcctggat tcccaagagg aatcgttcta ttctcaacac aagccaaagg
     2041 ggaattcttg aggatgaaca gatgtaccag aagtgctgca atctattcga gaaatttttc
     2101 cctagcagtt catataggag accggttgga atttctagca tggtggaggc catggtgtct
     2161 agggcccgga ttgatgccag ggtcgacttc gagtctggac ggatcaagaa agaagagttc
     2221 tctgagatca tgaagatctg ttccaccatt gaagaactca gacggcaaaa ataa
//