LOCUS       GL888197              475003 bp    DNA     linear   CON 25-JUL-2016
DEFINITION  Acromyrmex echinatior unplaced genomic scaffold scaffold307, whole
            genome shotgun sequence.
ACCESSION   GL888197 AEVX01000000
VERSION     GL888197.1
DBLINK      BioProject: PRJNA62733
            BioSample: SAMN02953789
KEYWORDS    WGS.
SOURCE      Acromyrmex echinatior (Panamanian leafcutter ant)
  ORGANISM  Acromyrmex echinatior
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita;
            Aculeata; Formicoidea; Formicidae; Myrmicinae; Acromyrmex.
REFERENCE   1  (bases 1 to 475003)
  AUTHORS   Nygaard,S. and Zhang,G.
  TITLE     The genome of the leaf-cutting ant Acromyrmex echinatior suggests
            key adaptations to social evolution and fungus farming
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475003)
  AUTHORS   Nygaard,S. and Zhang,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2011) Bioinformatics, Beijing Genomics Institute,
            Shenzhen, 2nd Office Building, Beishan Industrial Zone, Beishan
            Road, Yantian District, Shenzhen, Guangdong 518083, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 1.04
            Assembly Name         :: Aech_3.9
            Genome Coverage       :: 107x
            Sequencing Technology :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475003
                     /organism="Acromyrmex echinatior"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold307"
                     /db_xref="taxon:103372"
                     /chromosome="Unknown"
                     /sex="male"
                     /geo_loc_name="Panama"
                     /note="colony Ae372"
     gene            <2788..>4065
                     /locus_tag="G5I_06130"
     mRNA            join(<2788..2909,3243..3440,3558..3728,3852..>4065)
                     /locus_tag="G5I_06130"
                     /product="Surfeit locus protein 1"
     CDS             join(<2788..2909,3243..3440,3558..3728,3852..4065)
                     /locus_tag="G5I_06130"
                     /codon_start=1
                     /product="Surfeit locus protein 1"
                     /protein_id="EGI65383.1"
                     /db_xref="InterPro:IPR002994"
                     /db_xref="UniProtKB/Swiss-Prot:Q15526"
                     /translation="GVPIVTFALGTWQIKRWRWKLDLIEKLKQRTSAEPIDLPSDINE
                     LKDKEYYRMKVKGKFLYEKEFLIGPRSLIINGESVSEKGGGIFSRKTSSGYYVITPFK
                     LEDRDLIIMVNRGWIPKCDRSIYKMGNKIIDPVEVIGIIRTTEKRPPFILNNAPAKGV
                     WHYRDLNAMAKIAEAEPVYIELLAEYNIPQGPIGGQTKVTLRNEHLSYMITWYSLSAC
                     TSYMWFRQFIQKLPLI"
     assembly_gap    8126..8303
                     /estimated_length=178
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(<12241..>54302)
                     /locus_tag="G5I_06131"
     mRNA            complement(join(<12241..12717,13225..13673,23959..24149,
                     54205..>54302))
                     /locus_tag="G5I_06131"
                     /product="Glutamine synthetase 2 cytoplasmic"
     CDS             complement(join(12241..12717,13225..13673,23959..24149,
                     54205..54302))
                     /locus_tag="G5I_06131"
                     /note="GO_function: GO:0004356 - glutamate-ammonia ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /product="Glutamine synthetase 2 cytoplasmic"
                     /protein_id="EGI65384.1"
                     /db_xref="InterPro:IPR008146"
                     /db_xref="InterPro:IPR008147"
                     /db_xref="UniProtKB/Swiss-Prot:P20478"
                     /translation="MSTNILVRICGPKLLRTAMTEQKSWITVSRCLSITMSRSMLKDS
                     PNAALDKSLLQKYLDLPQPENAIQAKYIWIDGTGEGLRSKTRTLNVVPKHPSDLPTWT
                     YDGSSTYQADGANSDIFLYPVAIYNDPFRRGNNKLVLCDTYYSDKTPTKSNKRYRANQ
                     AMESIKDQEPWFGIEQEYTLLDFDGRPLGWPKNGFPGPQGPYYCGVGADKVIGREIVE
                     AHYRACLYAGVKLAGTNAEVMPSQWEFQVGPCTGINAGDDLWIARFILQRIAEEYGVI
                     VSLDPKPVDGSWNGAGAHTNFSTKAMRSDNGIAEIEKAIDKLSKQHLRHIQAYDPRGG
                     KDNERRLTGKCETSNIHDFSAGVANRNVSIRIPRGVAEEKKGYLEDRRPSSNCDPYSV
                     CDALVRTCVLNE"
     assembly_gap    33113..33130
                     /estimated_length=18
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    47731..47852
                     /estimated_length=122
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            <69155..>69358
                     /locus_tag="G5I_06132"
     mRNA            <69155..>69358
                     /locus_tag="G5I_06132"
                     /product="FLJ37770-like protein"
     CDS             69155..69358
                     /locus_tag="G5I_06132"
                     /codon_start=1
                     /product="FLJ37770-like protein"
                     /protein_id="EGI65385.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q3ZCU0"
                     /translation="MNEKIEQRICLKFCIANGISCAESLKMLQKAYGESTLSKTRAYE
                     WYSALKSGRDVVKNHVKVDQKSK"
     gene            <83500..>95210
                     /locus_tag="G5I_06133"
     mRNA            join(<83500..83599,84767..84966,85332..85365,
                     95080..>95210)
                     /locus_tag="G5I_06133"
                     /product="hypothetical protein"
     CDS             join(83500..83599,84767..84966,85332..85365,95080..95210)
                     /locus_tag="G5I_06133"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EGI65386.1"
                     /translation="MYSETLRWYSKNGHGGRCVLRLLTFTKDFLNNGITITGSTTLFK
                     RNKKGISVFYWLQERIVMPVPWRHPWCIEERALSKRLAVQLLNKIFRFGCEPSCPDPF
                     IVMKLFIELDTSSTFLLTVDKWGLSAEMTVLSRNISVPDVVGRADLRNMIRY"
     assembly_gap    101959..109222
                     /estimated_length=7264
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(<123542..>128214)
                     /locus_tag="G5I_06134"
     mRNA            complement(join(<123542..123696,124685..124698,
                     125312..125463,126111..126158,126817..126879,
                     127853..127891,128116..>128214))
                     /locus_tag="G5I_06134"
                     /product="hypothetical protein"
     CDS             complement(join(123542..123696,124685..124698,
                     125312..125463,126111..126158,126817..126879,
                     127853..127891,128116..128214))
                     /locus_tag="G5I_06134"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EGI65387.1"
                     /translation="MDLDTEKTRETHNSYIESTHGSLENINSNVGDIFMLVCVVSEED
                     SKELNEAAQIYGVGKIGVSYRIGSNYLGPGASRIRWNALQCGMEEVIFFYKHYCNMAM
                     KFVIAAIPARYETNNDLHETRRGKRFSLDKMREQRSVYTKKKKSKSYGLLWGVGPTSR
                     WLTIVPEISQWIELKGEALGGAAGSRATI"
     assembly_gap    148189..148208
                     /estimated_length=20
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    164809..165940
                     /estimated_length=1132
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    166094..166280
                     /estimated_length=187
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(168918..170430)
                     /locus_tag="G5I_06135"
                     /note="contains frameshift"
     assembly_gap    171865..173326
                     /estimated_length=1462
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    173551..173824
                     /estimated_length=274
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    174253..175223
                     /estimated_length=971
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    184504..184862
                     /estimated_length=359
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    197614..198189
                     /estimated_length=576
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    222055..222091
                     /estimated_length=37
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    226794..226814
                     /estimated_length=21
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    234258..234273
                     /estimated_length=16
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    237743..238121
                     /estimated_length=379
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    239475..239527
                     /estimated_length=53
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(<267205..>267888)
                     /locus_tag="G5I_06136"
     mRNA            complement(join(<267205..267541,267749..>267888))
                     /locus_tag="G5I_06136"
                     /product="hypothetical protein"
     CDS             complement(join(267205..267541,267749..267888))
                     /locus_tag="G5I_06136"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EGI65388.1"
                     /translation="MSADTEFPMTIKDILKFECLNAVSINVASKMDRFFLYGLQAIKR
                     RSTSREKLQLHAMDYGKMNDCAIRLPSEDKWLDFGNYCNKERVSFIVYDLKCVLRKME
                     LVREDAYVVQDSMCDARAMMCYCCINSVAIRIVLCGSRGNSKTLGASSAKSPLKCP"
     assembly_gap    291400..291529
                     /estimated_length=130
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    292479..292926
                     /estimated_length=448
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    293553..293623
                     /estimated_length=71
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(<306743..>309448)
                     /locus_tag="G5I_06137"
     mRNA            complement(join(<306743..306963,307071..307283,
                     309394..>309448))
                     /locus_tag="G5I_06137"
                     /product="Peptidyl-prolyl cis-trans isomerase
                     NIMA-interacting 1"
     CDS             complement(join(306743..306963,307071..307283,
                     309394..309448))
                     /locus_tag="G5I_06137"
                     /note="GO_function: GO:0005515 - protein binding [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /product="Peptidyl-prolyl cis-trans isomerase
                     NIMA-interacting 1"
                     /protein_id="EGI65389.1"
                     /db_xref="InterPro:IPR000297"
                     /db_xref="InterPro:IPR001202"
                     /db_xref="UniProtKB/Swiss-Prot:Q5BIN5"
                     /translation="MADEELPAGWEKRLSRSTGQHYYLNIYTKESQWDRPDKPADPSG
                     NGKTDGPEEVQCSHLLVKHSGSRRPSSWREENITRSKEEALDLVKSYREQIASGKATF
                     AELASKYSDCSSAKRGGDLGPFSRGAMQKPFEQAAFALKVGELSSPVHTDSGIHIIQR
                     TA"
     gene            complement(332001..333012)
                     /locus_tag="G5I_06138"
                     /note="contains frameshift"
     gene            <337116..>337412
                     /locus_tag="G5I_06139"
     mRNA            <337116..>337412
                     /locus_tag="G5I_06139"
                     /product="Mariner Mos1 transposase"
     CDS             337116..337412
                     /locus_tag="G5I_06139"
                     /codon_start=1
                     /product="Mariner Mos1 transposase"
                     /protein_id="EGI65390.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q7JQ07"
                     /translation="MATRAKPVKKYLEGVKWEILPHPPYSSDIAPSDFRSMQILFRSM
                     QSALSGERFNSYEGIKKWLDECIASKEPDFFIRGIRLLPERWEKVVASEGAYFE"
     assembly_gap    345948..351782
                     /estimated_length=5835
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            <365631..>387325
                     /locus_tag="G5I_06140"
     mRNA            join(<365631..366026,366119..366190,366901..367053,
                     387236..>387325)
                     /locus_tag="G5I_06140"
                     /product="hypothetical protein"
     CDS             join(365631..366026,366119..366190,366901..367053,
                     387236..387325)
                     /locus_tag="G5I_06140"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EGI65391.1"
                     /translation="MSKTENSDLTAEKDAPPMEMIRTDCADNTAIIIAVKSTNVMWED
                     PLAPVEVAKEVLNAQFENKYLIEAKIDTNVLGEKEIDNPDIYIKETTDIITHVPAHVS
                     VKDVNVTQVKAQNYAESEEVLQPKFINEEKVDTSKQNARDNIAAYISRLEAEVRPALM
                     YEERNRVIANQENQINALNNQVASLKEVISVTRDLLEIRNIEVKQLQISKIVDNTAHI
                     TDFESTSNHIAPYATLTN"
     gene            complement(<420690..>426983)
                     /locus_tag="G5I_06141"
     mRNA            complement(join(<420690..421040,421498..421846,
                     426844..>426983))
                     /locus_tag="G5I_06141"
                     /product="hypothetical protein"
     CDS             complement(join(420690..421040,421498..421846,
                     426844..426983))
                     /locus_tag="G5I_06141"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EGI65392.1"
                     /translation="MAVLTAQNVTILFFELGWPSPLIMAATKAGSKIRNLKQSKGTPS
                     GGSSASDTEVGTSLIIPYRKTLCDGIYAVYPSLATGWAIYWYVFEFRRMATPNELQTR
                     NFDSLLVIPSAARNNMFSLEERFEILKTYFQSQCCVAETVRILKRNMGRDRAPTEGAI
                     RKLDAESNDPYLLLNDLEEAAFLTCELWPFLEDDAILSRTALKLFCCGMDESSMEVLV
                     RFLEPRSRTTSIDMGDSHEFTETTFLGPPVVMLLTNDSKWSIETVLVSERVERKGRDL
                     RVL"
     gene            complement(<447130..>447423)
                     /locus_tag="G5I_06142"
     mRNA            complement(<447130..>447423)
                     /locus_tag="G5I_06142"
                     /product="Mariner Mos1 transposase"
     CDS             complement(447130..>447423)
                     /locus_tag="G5I_06142"
                     /codon_start=1
                     /product="Mariner Mos1 transposase"
                     /protein_id="EGI65393.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q7JQ07"
                     /translation="DNAPSHRSTLVTDFLTKNHILTINHSPYSPDMAPCDFYLFGKMH
                     LSMKGKRYVDVEDIQRACTTVLKDMPLNDIKHSFEMLLDRAKRCIESDGDYFE"
     assembly_gap    447582..447710
                     /estimated_length=129
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    448046..449432
                     /estimated_length=1387
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    449674..450800
                     /estimated_length=1127
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    451150..451482
                     /estimated_length=333
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    452539..452614
                     /estimated_length=76
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    452912..453190
                     /estimated_length=279
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    471251..471482
                     /estimated_length=232
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    472708..472728
                     /estimated_length=21
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    472891..473148
                     /estimated_length=258
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    473557..473640
                     /estimated_length=84
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    473954..474136
                     /estimated_length=183
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    474603..474680
                     /estimated_length=78
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
CONTIG      join(AEVX01008860.1:1..8125,gap(178),AEVX01008861.1:1..24809,
            gap(18),AEVX01008862.1:1..14600,gap(122),AEVX01008863.1:1..54106,
            gap(7264),AEVX01008864.1:1..38966,gap(20),AEVX01008865.1:1..16600,
            gap(1132),AEVX01008866.1:1..153,gap(187),AEVX01008867.1:1..5584,
            gap(1462),AEVX01008868.1:1..224,gap(274),AEVX01008869.1:1..428,
            gap(971),AEVX01008870.1:1..9280,gap(359),AEVX01008871.1:1..12751,
            gap(576),AEVX01008872.1:1..23865,gap(37),AEVX01008873.1:1..4702,
            gap(21),AEVX01008874.1:1..7443,gap(16),AEVX01008875.1:1..3469,
            gap(379),AEVX01008876.1:1..1353,gap(53),AEVX01008877.1:1..51872,
            gap(130),AEVX01008878.1:1..949,gap(448),AEVX01008879.1:1..626,
            gap(71),AEVX01008880.1:1..52324,gap(5835),AEVX01008881.1:1..95799,
            gap(129),AEVX01008882.1:1..335,gap(1387),AEVX01008883.1:1..241,
            gap(1127),AEVX01008884.1:1..349,gap(333),AEVX01008885.1:1..1056,
            gap(76),AEVX01008886.1:1..297,gap(279),AEVX01008887.1:1..18060,
            gap(232),AEVX01008888.1:1..1225,gap(21),AEVX01008889.1:1..162,
            gap(258),AEVX01008890.1:1..408,gap(84),AEVX01008891.1:1..313,
            gap(183),AEVX01008892.1:1..466,gap(78),AEVX01008893.1:1..323)
//