LOCUS GL636527 60589 bp DNA linear CON 13-MAR-2015 DEFINITION Coccidioides posadasii str. Silveira unplaced genomic scaffold supercont2.42, whole genome shotgun sequence. ACCESSION GL636527 ABAI02000000 VERSION GL636527.1 DBLINK BioProject: PRJNA17787 BioSample: SAMN02953684 KEYWORDS WGS. SOURCE Coccidioides posadasii str. Silveira ORGANISM Coccidioides posadasii str. Silveira Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Onygenaceae; Coccidioides. REFERENCE 1 (bases 1 to 60589) AUTHORS Neafsey,D., Orbach,M., Henn,M.R., Cole,G.T., Galgiani,J., Gardner,M.J., Kirkland,T.N., Taylor,J.W., Young,S.K., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chapman,S.B., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Howarth,C., Jen,D., Larson,L., Mehta,T., Neiman,D., Park,D., Pearson,M., Richards,J., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Haas,B., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform, The Broad Institute Genome Sequencing Center for Infectious Disease. TITLE The Genome Sequence of Coccidioides posadasii strain Silveira JOURNAL Unpublished REFERENCE 2 (bases 1 to 60589) AUTHORS Neafsey,D., Orbach,M., Henn,M.R., Cole,G.T., Galgiani,J., Gardner,M.J., Kirkland,T.N., Taylor,J.W., Young,S.K., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chapman,S.B., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Howarth,C., Jen,D., Larson,L., Mehta,T., Neiman,D., Park,D., Pearson,M., Richards,J., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Haas,B., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform, The Broad Institute Genome Sequencing Center for Infectious Disease. TITLE Direct Submission JOURNAL Submitted (24-MAR-2010) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA COMMENT ##Genome-Assembly-Data-START## Assembly Method :: Arachne v. April 2007 Assembly Name :: CPS2 Genome Coverage :: 5x Sequencing Technology :: ABI ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..60589 /organism="Coccidioides posadasii str. Silveira" /mol_type="genomic DNA" /submitter_seqid="supercont2.42" /strain="Silveira" /db_xref="taxon:443226" /chromosome="Unknown" gene <536..>3151 /locus_tag="CPSG_10150" mRNA join(536..1381,1449..2237,2314..3151) /locus_tag="CPSG_10150" /product="ESDC" CDS join(1184..1381,1449..2051) /locus_tag="CPSG_10150" /codon_start=1 /product="ESDC" /protein_id="EFW13235.1" /translation="MAALQLNFTLDTPGKVKTVHLLGSWDGYRGQLPLSKTFSGGKSA SWAGKFRFQSSMLKPGQRYWYYYILDGYHVYHDPDCESTVERTTKRTLNILDVPANMG QKSSSRTSAPSSEVARGRALSPSRIQHPKPSKPYESRRFCESSHVTQRAMDALNARFQ AADLSDSDSDISSSPSSAFSSSLRGGSTSPSSISSFSDSSSSCSCQLYAITSSKERVR IHCGGKRCGGSSPCDSSGSDFDSCSSDSDEEYEYARPQLLRQNIRIRR" gene complement(<2942..>3386) /locus_tag="CPSG_10151" mRNA complement(join(<2942..3051,3191..>3386)) /locus_tag="CPSG_10151" /product="predicted protein" CDS complement(join(2942..3051,3191..3386)) /locus_tag="CPSG_10151" /codon_start=1 /product="predicted protein" /protein_id="EFW13236.1" /translation="MAVQSSDGSETDPFRPPPRPEASGAEADGVGKSREPRREGFGTK PHVKRDRRGLVAGGRSDEAKRECLERNTFTTIAIPHKKRIAVPTFNAKGNNQGLFRL" gene <3614..>4741 /locus_tag="CPSG_10152" mRNA <3614..4741 /locus_tag="CPSG_10152" /product="alcohol dehydrogenase" CDS 3614..4726 /locus_tag="CPSG_10152" /codon_start=1 /product="alcohol dehydrogenase" /protein_id="EFW13237.1" /translation="MSNDEPPTAFEGWVGHSATSPLTFTTFKPKPFTPFDVDIKITHC GICGSDIHTLRSGWGPTNYPCVVGHEIVGHVVRVGSAVNTLSSPSKDLRVGDRVGVGA QCNSCLKPDCEECVSGLEHYCPRRTGTYNGKFPDGSKSYGGYARYWRGPAYFVFRIPD ALSSAVAAPLLCGGITVFSPLLRNGAGPGKSVGIIGIGGLGHMGLLFAKAMGCDRVVA ISRSKSKRSDALNGLGADHFIATDEDKDWAKRNANSLHFIISTVSSGNVPLAQYLRLL KRNGQFIQVGAPEERFPSFNVGPMITKGTVIAGSQLGSPDEIRQMLDLAAQKKVLPWI QERSMDDVNNALVDMDAGKARYRYVLVNSPEGVAKL" gene complement(<4884..>5308) /locus_tag="CPSG_10153" mRNA complement(join(<4884..5051,5150..>5308)) /locus_tag="CPSG_10153" /product="predicted protein" CDS complement(join(4884..5051,5150..5308)) /locus_tag="CPSG_10153" /codon_start=1 /product="predicted protein" /protein_id="EFW13238.1" /translation="MADINGGTGTAGDQGGFSGERTQEYYVVDAMTIVLSSPSVQIPR QSDWAKCPKDTRTGCGPPPAAVPALSTVVVVQRPTAVAETANAGNATGLAYVSSPAES VEGNFT" gene complement(<5917..>6710) /locus_tag="CPSG_10154" mRNA complement(5917..6710) /locus_tag="CPSG_10154" /product="conserved hypothetical protein" CDS complement(6009..6656) /locus_tag="CPSG_10154" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EFW13239.1" /translation="MSPNSPSTDLPFTDTSQIFHLYLTKSNTNWNLTLADKTPLYYVR TLVFTFGRPEITLHAGNTRNGDVVAVSNFLKLSSKSKLGLGDPDNVGEMVWEDLTKES RDHSRYRFEMTVPSGSGFERKGFLWKRTSSVGVDGSKPSVLSARNFKFVDEQTEEVLG AYTNNGLKSIKKQGKFQLNTSYGKDFETMFLLSGLTILERTIRREAARHSGGGGA" gene <7208..>10999 /locus_tag="CPSG_10155" mRNA join(7208..9614,9669..10170,10319..10999) /locus_tag="CPSG_10155" /product="conserved hypothetical protein" CDS join(7281..9614,9669..10170,10319..10794) /locus_tag="CPSG_10155" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EFW13240.1" /translation="MAFTGGRYEDSDPPSTPAKSSDFGSSAFSSTPFGHPPSSAGSFT PAGNPPPSSLLGSSVNSQGTEDLLSFSTNSSNFSLSQSRNAPIPSFNSRQTKAPPSNL FRGIGSGRNIPRSKLSHSFTPFDDDDGKSDEEEQMEKTNTGAMDMEEDDAPLPSMFAP INGRFTGNTRKSMVYSNPMNAKRAKLDETWVQSLPSSTVQTKKQPSAFPGIARDIASR KSVATVDEPSGFLLDMEDIVSRMYDRVREREADDEIVENTLSEVCEYLASLWKKYSDE SGPASYENGCVGPGEQSSGIVKASFLSSLLLQLHHPPAFQRQFTSRNSQLFRSPFRPA ISAQQPKSKSPIPKVLFDWLNQYHSPQASRLDALKRQQPNPTASPTFWNITLAALLRA DFPIVMQLLEAADFTYARTAMEEGSSEPGYQGRQLQTIQQCVNKTLHNLRACPGVQSD DWDIKGMEWSVYRKQIASALLELEDLAEGSNRDEMGNSQAFEASHFGLLSLRSSVSSF SQSARMAESKIPWQIYQHLKALYNIILGDVASILKYSDDWVEATVSLTAWWNGDDDSD ITLENRSSNRLAAKRSQSPRSVDINTEEAYLRRLDYTFTCVTDTLGKDGFRINSMNPC EVGLASLFEGNVEGVLRLTQTWSLPIAAATAEVASFGGWLAASAGSEPMPGLNENDLM VLSYGQPDQKLRKDDILVNYSSGIFDRGRLDGPSSTRDGWELSLEIMSRLDDQELMKT KVNQLLDRVVIDSSDKMDRLVLLCTELGYNEEGRKISERYGDKIAQTSQEYGTALFCY ARAHCSQKIKNVVDLLISLCLVQSTAYPPRSELDSQLRSLLDEPRAALAAIASVDSEG AAMLQFYFSGYATLRNYYDIRDEEVNLEAGQKPKHRPLARKRAAAQALTAVIGSAADS ICGGLYDQDRKTAVQVDGLMVLLGEALALIKPDPNQFFTLDQLRIILAAIEDLQTVTS RVYDQCEECLQSALAQHRNLNDSTSTAPTSPVDSRSHSPTNLLRKSVSSLSGSFSGFS LIGSEVLDTRSRGTMDSGVLVGRPGSGGNAGVKRGWDWREVVRSDVKGEEILSTLRLQ LARGLAFGALNDYAM" gene complement(<11590..>12278) /locus_tag="CPSG_10156" mRNA complement(join(<11590..11662,11722..11757,11808..12037, 12198..>12278)) /locus_tag="CPSG_10156" /product="predicted protein" CDS complement(join(11590..11662,11722..11757,11808..12037, 12198..12278)) /locus_tag="CPSG_10156" /codon_start=1 /product="predicted protein" /protein_id="EFW13241.1" /translation="MPIPAENNSMLSFAKAGGRLHGPRPGSSNGIRPPFQLLKIRWAG GGGGHLTASFQRPVTACSDQWPGLRRSQPYRVRATTLLWRRRRIGKETKKAWPRLSKT SLNGHVLTNTKRKTKERGLFGLLPQRVATVHSVAGVG" gene complement(<12376..>13360) /locus_tag="CPSG_10157" mRNA complement(join(12376..13108,13304..>13360)) /locus_tag="CPSG_10157" /product="conserved hypothetical protein" CDS complement(join(12713..13108,13304..13360)) /locus_tag="CPSG_10157" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EFW13242.1" /translation="MPYEGNTIEPPTRNYSRWRTDRERERESSAVEIASQRWGWASSG KEAGARSALVVALHGGALAQSVTAGRCDAAVALDYDQSMSPMARRLGLHIADRGGLLQ LTGDGVSECDASQLLSTNDDLCDSTDVITKPSLVGTLPWRTKTLWQRN" gene complement(<16018..>16982) /locus_tag="CPSG_10158" mRNA complement(join(16018..16550,16620..16982)) /locus_tag="CPSG_10158" /product="conserved hypothetical protein" CDS complement(join(16275..16550,16620..16736)) /locus_tag="CPSG_10158" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EFW13243.1" /translation="MPRLRDGQRNRKSTRRRRNGSSGAINPLMNCFLELSMHEFCQSD SKDSNPVLQRQNPTMSSTLQLETKKNKFWQSTSDAAFATTLILIMLVLQGPTFESMVA TPSPAVWCDTTSVGDSKHNQIGPWIRSR" gene complement(<16558..>18082) /locus_tag="CPSG_10159" mRNA complement(join(16558..17646,17706..17786,17854..18082)) /locus_tag="CPSG_10159" /product="hypothetical protein" CDS complement(join(16762..17646,17706..17786,17854..18033)) /locus_tag="CPSG_10159" /codon_start=1 /product="hypothetical protein" /protein_id="EFW13244.1" /translation="METHNLDTASDYLNKLLLARGLLRNGKPIDFAEPTRASDGVDGT MTRVINLIHDLIIRRDREAEQHENLASMIRNLRNTEAKQTVEIERLEAKVQEQGRSLA LTEGQERVFKANLRNAEGTIRKLKEQVQRMKSTIQQIRAQYTTDIRKRDLEIQKLKTR VTERTRGKKDGPGVTTVTIIPPPKPTISRQKSSEGGEGVDTPGYSLKEETTEFLTQLC QNLSDENDALIRLVQGTIKTLKELQGLSEADANDSTLGPDSLEPESDPLVGPMPPYET LSQEMSYVLDQLRALLTNPSFVSLEEVEIRDNEISRLRDGWEKMEARWKEAVGMMDNW HKRMACGGDGVNIDELKRGMKLGSSTDHGVAHRVPDTHGSDGRGNSR" gene <18372..>20598 /locus_tag="CPSG_10160" mRNA join(18372..18524,18581..18881,18955..19082,19174..19675, 19735..20598) /locus_tag="CPSG_10160" /product="conserved hypothetical protein" CDS join(18804..18881,18955..19082,19174..19675,19735..20379) /locus_tag="CPSG_10160" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EFW13245.1" /translation="MQKFEEAHKLYFYSLRMIDEHAPERKQIEALMLKTKKRIIPPKR VDPLTVLAPELVSMILEHLDLQSTLRFIQVSKLWLKLGSGLSRQWKNLNLTVAKRPVS LSAVRAFVCRTNGGVKEASLARINPTVIPKVLELLSRCPDLNYLKVTAEQKIDSLPVV NLKNLKTLIVLKCTLPRDKFWDIMSSCPRLERVEAFVDVSSDTPDSLPQLSNLRCLRI LFSHPPGYLVTGNILFQHPELKEVMPNLEELHFEGAPSSPWAQAISLSDYSSLKKFTY MRIYLHGLLVLPVTLEYLRLEHCTFAPPLQGNPVGQFSRLKSAIFQFCYPLSPDMLES LLVNNERTLTHLTISWCSDLAQEHLEPLITRGLFRSITHLDISGVIGVNDAITPLIIN NMPNLKVLNLSATRISGLTIKQLVDAETPKIEKIVVDTVSRDAIQYGLSRNIQVSQLP " gene complement(<20867..>23134) /locus_tag="CPSG_10161" mRNA complement(join(20867..21493,21588..21890,21954..22114, 22181..22494,22597..23134)) /locus_tag="CPSG_10161" /product="indoleamine 2,3-dioxygenase" CDS complement(join(21245..21493,21588..21890,21954..22114, 22181..22494,22597..23087)) /locus_tag="CPSG_10161" /codon_start=1 /product="indoleamine 2,3-dioxygenase" /protein_id="EFW13246.1" /translation="MPTLEDRSSATTMDKFPHVLDDPATLPRSLDPFTITTSTGFMPL IIPPTTLPEVFDPLTSLLARLPVEKADGTPGLLANFELGPAVLKELPDLTDEVDKLVT DDGKPDLFTITAVFRDYSFLASSYLLEPCWQTWKTDPDSGYGLGRDRLPHSVAGPMYR CAELLDIPPFLSYAAAYSLYNYTLDDPSKGHEYSNLRLVRAFERGLDPKSSEAGFILT HIYMVKESYALISGAVRILNSLDTVKDRKEINDAYRQILTAMTKIEECMEDMWKNSKP TEYLAFRVFIFGITSQSMFPNGVVYEGINDNKPLYFRGESGANDSIIPLLDHLLEIPM PDTPLTKILHEFRAYRPLPHREFLTHVRLRSKQLGVREFSIQDPETVLLYLKTLDHVR SFRWRHWLFAREYIIKRTPHPTATGGSPIVTWLPNQLSAVMDLMISTYDEYVAPMISK EAGSNGASSSAANGEADLGSTKHYRDQVQEVMETVRDQRIKLAKEVERWCAERGV" gene <23230..>23947 /locus_tag="CPSG_10162" mRNA join(<23230..23260,23598..>23947) /locus_tag="CPSG_10162" /product="conserved hypothetical protein" CDS join(23230..23260,23598..23947) /locus_tag="CPSG_10162" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EFW13247.1" /translation="MPSKAIKGVGDREVGQMRSRDWEEGTYAKCSWSLEHRCTTATEW KYCQETASRKERWSDAHSDALQRRPLVVSAPTDSTRRSQDAKGLEDWRCTTTASSSAR RYNKVIAKHKAKQTTLSADWPGRN" gene complement(<24237..>26271) /locus_tag="CPSG_10163" mRNA complement(join(24237..25022,25103..26271)) /locus_tag="CPSG_10163" /product="conserved hypothetical protein" CDS complement(join(24447..25022,25103..25591)) /locus_tag="CPSG_10163" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EFW13249.1" /translation="MTMMGALADPATLQLCNRVLLPVLFFFAIVANAACECGFRMNDT SQYFTHIIYSNFTQYSPGKKLASNPEFRRNWAIQRWNMPSINWATPLPVLNEQENVYL ENGHMVLRQVGYPKEGILAGRNVSVASVAGQSGDLLHGSFRTEVKIEGAEGGSVGAFF WYHDDQNEIDIEVLTREIKSDRLLVHYTTHPAIDEDGDVIRNATAIVPVEGNDPANWF QRHRFDWSKEELRFYHNGSLMHANNIRIPDVGGRALLNLWADGGIWSGAPSTTNVYMR VKYVIVYHNTTASDSGQDVEFNDRCARAGGPSNETVCLDVFVEDGAVDPSSIGTALAP LPFWVLSLLWLVLGVIFTSL" gene <26164..>26726 /locus_tag="CPSG_10164" mRNA 26164..26726 /locus_tag="CPSG_10164" /product="hypothetical protein" CDS 26348..26584 /locus_tag="CPSG_10164" /codon_start=1 /product="hypothetical protein" /protein_id="EFW13248.1" /translation="MRLVGGASRNYKRALDGDRLVGSEWPVWLTREFLPQLGGHLLDE KDLEMDAKSASECSSAGWLMGTLASCLCLVTLYG" gene <27112..>30239 /locus_tag="CPSG_10165" mRNA join(27112..28180,28278..28504,28572..28702,28776..29022, 29079..29588,29704..30239) /locus_tag="CPSG_10165" /product="ran-binding protein" CDS join(27318..28180,28278..28504,28572..28702,28776..29022, 29079..29588,29704..29837) /locus_tag="CPSG_10165" /codon_start=1 /product="ran-binding protein" /protein_id="EFW13250.1" /translation="MTNVPHSPSGSGRAPNTASFSSGPNIISYPRRSSYASVVSGAAS THPPAWSGAPASLGTATPSSSYPPQYNRLHRQAGYSFDEEMQMNGGASSGNNSWRRAA GLPDHSRQFAKALAYGSGGAVGGGGVVGGAGAGGPIFMQQTNQFFTPSYLKSSKYIAQ LAAANKSKATGHKESSSAQSSNAPSLSTSSSNANLHRMAPSHRGMTYDIIEHNASSDE DTLSPLPSRWNELDKYSGLDLMGDGLEVRYMGQANKQELEAAAVRANHPMPPQCGIYY YEVTIIAKSADGMIGMGFSNNKASLERLPGWEQESWAYHGDDGKTFFGDNQGQGKPYG PTFGVEDTIGCGVNFATGTAFFTKNGMFLGNAFRDLKLGKVFPSIGMKKYPGCHVKTN FGQFPFVFDIDGMMAQERRNIQMDIRSTNVSHLHPPLTESVLLQELVAQFLAHDGYVE TARAFAEEVREETKALQNGRVTPLKDYTVEDDADAVNRQQIRTAILDGDIDKALELTK TYYDTVLENNPQIYFRLRCRKFLEIVRSYSEPETSQPGKRVKSTKEPAGDNSGDIFTH DMELDHQMQDVQDPEEMDTEPAAKDLYRAKEALEYGQQLKADYMNDDKKQYEKTLNDI FSLVAYSDPKTSPHGHLLDPSGRVVVAEELNSAILVSLGKSSSAALERLYQQTEALIN EISEDGGVGAFINVRNDYLTG" gene complement(<31124..>32076) /locus_tag="CPSG_10166" mRNA complement(join(<31124..31541,31688..>32076)) /locus_tag="CPSG_10166" /product="conserved hypothetical protein" CDS complement(join(31124..31541,31688..32076)) /locus_tag="CPSG_10166" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EFW13251.1" /translation="MPSPASTPSSTAGRSTKMNKKTKTIVLKLTSSLLNRFPGVATPG DDQEAKSKASSSSPTSSPTPVGPSAASVDNASEPRSSPPVAEAAATAESSKKKPGTPS KTGTKRAAGSDAGPKPRARPGPKKKARLDDGTVDSNGRSTGPTTTGTHKLGPKANQGA INAGLRALDRTGKPCRRWERKAFQLKSFTGTAWQVRSWRAPPRPKPADVTMTDANTAA ATPVDDTNANNKDNIASSAVASERSNAGETATPSFPGNAESSPAPVAAAA" gene complement(<32266..>33081) /locus_tag="CPSG_10167" mRNA complement(join(<32266..32666,33039..>33081)) /locus_tag="CPSG_10167" /product="predicted protein" CDS complement(join(32266..32666,33039..33081)) /locus_tag="CPSG_10167" /codon_start=1 /product="predicted protein" /protein_id="EFW13252.1" /translation="MEQSGYDTSNLAKTAWEGGQRYGASNGVSQQERYLPPAVAPAET AFLRSKLRLNGGGDQAMRLFLFPSTVHDDNSNTKPPTMKPSPRLTNLPPATNLFSAHN PAHHHHLLLHHHHHHHHHPPSSMPIVLPAPTARLCRSPVRSELIP" assembly_gap 45060..45528 /estimated_length=469 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <46001..>46772 /locus_tag="CPSG_10168" mRNA join(<46001..46158,46208..46412,46461..>46772) /locus_tag="CPSG_10168" /product="conserved hypothetical protein" CDS join(46001..46158,46208..46412,46461..46772) /locus_tag="CPSG_10168" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EFW13253.1" /translation="MGPKQYSMREKTRAAREHRQALEGHQKDIFKAGEADRKARHDVL KRIRAKHEWQNSSEEDRKMIEDKAIEELMAKRFAKGKSKEYHEHQLMVSQQKEREEEK KRRREEATEAENEARQKKKAKTSQAQHPIAARREARFCQMIARLEAKVMAHGHDCLAA VGVSREGVEEEMRGFLGQLQGPSEDNNSPPAPEEVEEDDFEVVVSSDEDDEEDNEAED DWIIDA" assembly_gap 48349..50014 /estimated_length=1666 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <50057..>50254 /locus_tag="CPSG_10169" mRNA <50057..>50254 /locus_tag="CPSG_10169" /product="conserved hypothetical protein" CDS 50057..50254 /locus_tag="CPSG_10169" /codon_start=1 /product="conserved hypothetical protein" /protein_id="EFW13254.1" /translation="MLLKHGDKVHMLDEALISHEELAKEVIQDNQDDQDTPEIVREEI ASLLNPLLNPDEEQEIRQRYQ" CONTIG join(ABAI02000442.1:1..45059,gap(469),ABAI02000443.1:1..2820, gap(1666),ABAI02000444.1:1..10575) //