LOCUS       GL433865              454598 bp    DNA     linear   CON 13-MAR-2015
DEFINITION  Chlorella variabilis unplaced genomic scaffold CHLNCscaffold_31,
            whole genome shotgun sequence.
ACCESSION   GL433865 ADIC01000000
VERSION     GL433865.1
DBLINK      BioProject: PRJNA45853
            BioSample: SAMN02744065
KEYWORDS    WGS.
SOURCE      Chlorella variabilis
  ORGANISM  Chlorella variabilis
            Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes;
            Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella clade;
            Chlorella.
REFERENCE   1  (bases 1 to 454598)
  AUTHORS   Blanc,G., Duncan,G., Agarkova,I., Borodovsky,M., Gurnon,J., Kuo,A.,
            Lindquist,E., Lucas,S., Pangilinan,J., Polle,J., Salamov,A.,
            Terry,A., Yamada,T., Dunigan,D.D., Grigoriev,I.V., Claverie,J.M.
            and Van Etten,J.L.
  TITLE     The Chlorella variabilis NC64A Genome Reveals Adaptation to
            Photosymbiosis, Coevolution with Viruses, and Cryptic Sex
  JOURNAL   Plant Cell 22 (9), 2943-2955 (2010)
   PUBMED   20852019
REFERENCE   2  (bases 1 to 454598)
  AUTHORS   Kuo,A., Terry,A., Salamov,A., Pangilinan,J., Lindquist,E.,
            Lucas,S., Pitluck,S., Lomsadze,A., Borodovsky,M., Blanc,G.,
            Duncan,G., Dunigan,D., Claverie,J.-M., Van Etten,J. and
            Grigoriev,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2010) US DOE Joint Genome Institute, 2800
            Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     URL -- http://www.jgi.doe.gov/NC64A
            JGI Project ID: 4002944
            The culture was obtained from L. Muscatine, UCLA (1982) and is
            maintained in the lab of James L. Van Etten
            (jvanetten@unlnotes.unl.edu)
            DNA was isolated by James Gurnon, (contact James L. Van Etten
            (jvanetten@unlnotes.unl.edu)
            Contacts: James L. Van Etten (jvanetten@unlnotes.unl.edu)
                      Igor Grigoriev (ivgrigoriev@lbl.gov)
            Annotation done by the JGI and the Chlorella Consortium.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: JAZZ v. May 25, 2007
            Assembly Name         :: v 1.0
            Genome Coverage       :: 8.9x
            Sequencing Technology :: Sanger
            ##Genome-Assembly-Data-END##
            
            ##Metadata-START##
            Organism Display Name :: Chlorella sp. NC64A
            Culture Collection ID :: ATCC 50258
            GOLD Stamp ID         :: Gi01362
            Diseases              :: None
            ##Metadata-END##
FEATURES             Location/Qualifiers
     source          1..454598
                     /organism="Chlorella variabilis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="CHLNCscaffold_31"
                     /strain="NC64A"
                     /db_xref="taxon:554065"
                     /chromosome="Unknown"
     assembly_gap    1335..21388
                     /estimated_length=20054
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    24561..24779
                     /estimated_length=219
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            <27856..>29340
                     /locus_tag="CHLNCDRAFT_141059"
     mRNA            join(<27856..27870,28651..>29340)
                     /locus_tag="CHLNCDRAFT_141059"
                     /product="hypothetical protein"
     CDS             join(27856..27870,28651..29340)
                     /locus_tag="CHLNCDRAFT_141059"
                     /note="similar to ORF2"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51317.1"
                     /db_xref="JGIDB:ChlNC64A_1_141059"
                     /translation="MDKEQSGECVPPLFYADDQALLATTPAGLRFQLGYLESYCAAWG
                     LTVNTKKTQVVVYTTGRAAATEERFRYGGNEVETVPTFRYLGVHLHCRQAFALAASYR
                     AEAGRRAMHLLRRRLAENGLQAPLLSMRAFKSWLGKQWRTGSHWMAEETGRWQRLDRT
                     QRPCPHCQAPLEDVRHAVYDCPLYAGLREEYAELFHSPGHALPSLAAFLGQARQGRLA
                     RFADRCHEEHAAALAQ"
     assembly_gap    29487..29536
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(<32809..>38023)
                     /locus_tag="CHLNCDRAFT_55168"
     mRNA            complement(join(<32809..32812,32927..33714,36256..36303,
                     36566..36648,37547..37754,37829..>38023))
                     /locus_tag="CHLNCDRAFT_55168"
                     /product="hypothetical protein"
     CDS             complement(join(32809..32812,32927..33714,36256..36303,
                     36566..36648,37547..37754,37829..38023))
                     /locus_tag="CHLNCDRAFT_55168"
                     /note="predicted protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51345.1"
                     /db_xref="JGIDB:ChlNC64A_1_55168"
                     /translation="MLADVFVIIEAPFTFRGDPKPLHFQDAICRRFELFASKIVHIVI
                     ERDTTDPDMEVAAWHREFQSRLAFHQVADKLDIQPSDIIFQSDTDELPTAAALLTARN
                     IPVNGLSANDVAIPVVDLHIQGYSLSLSHFAEASAAIQQPLALNPCAAVVGGPAGPAA
                     RQSLCYEVDRLTSIEAPPIWAPQLILQGRTACERVQLEYLRGLLGVRDSTPALTVLAE
                     TGQLPLPAYWTLQVARFVSNLQAMGGERVARLAMLDSVALAADTDTGLPLARQPWAAQ
                     VSRVLAAAGAPCDLTADEGVAIPELAEALLERHVASYTHASVKVQRYIEDVWGGSISA
                     EAYTPASFLCDVPERRRRVRLAQWRTGSHWMAEETGRWQRLDRTQRPCPHCQAPLEDV
                     RHAVYDCPLYAGLREEYAELFHSPGHALPSLAAFLGQARQGRLARFADR"
     assembly_gap    36032..36081
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(<39629..>40406)
                     /locus_tag="CHLNCDRAFT_141061"
     mRNA            complement(join(<39629..40129,40230..>40406))
                     /locus_tag="CHLNCDRAFT_141061"
                     /product="hypothetical protein"
     CDS             complement(join(39629..40129,40230..40406))
                     /locus_tag="CHLNCDRAFT_141061"
                     /note="similar to unnamed protein product"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51346.1"
                     /db_xref="JGIDB:ChlNC64A_1_141061"
                     /translation="MSFRKGDFTAADQAQLTAGRPHVHFIEMTTRYWSLPAFLNESDV
                     GTWLYPKFAVGYRHMIRWFALHIWSFMAEAGYEWVMRLDEDSFIHSHIPYDLVEFMEG
                     RGLQYAYRVDTHEDKHYAVGFQQIVRSHLAMFFRDPYPSALLSHCTPPSLEGLSQDWN
                     HFTFYNNFFLTNVSLWHRPDMRRFLEHVDRTGGIYTHRWGDAPIQTVAVMLFLPEEQV
                     HKFTDWT"
     gene            complement(<41440..>43100)
                     /locus_tag="CHLNCDRAFT_55170"
     mRNA            complement(join(<41440..41669,41780..41947,42126..42285,
                     42439..42537,42657..42712,42827..>43100))
                     /locus_tag="CHLNCDRAFT_55170"
                     /product="hypothetical protein"
     CDS             complement(join(41440..41669,41780..41947,42126..42285,
                     42439..42537,42657..42712,42827..43100))
                     /locus_tag="CHLNCDRAFT_55170"
                     /note="similar to XRCC2"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51347.1"
                     /db_xref="JGIDB:ChlNC64A_1_55170"
                     /translation="MEGVNEGSDAEEEARRFLQPDETAGQLLARTYVEPLHTGLPLID
                     RFLAFRGGQVLEVASAAGAGRTTALLQVAATCILPQVAGGVTFGGKGAGVLFLDLDAK
                     LDLVRLLEMLDTRIFAAQQAAGVLEPDTMPVLADCLSRFHLVRCHGSFEMLAALCSAQ
                     PTLDALAAAPGGLACLLLDNVATHYYLDRSARGPPSGGIGAASSLFGGVPDLAREGAP
                     LTLFRVHAALAAELRALQRRYRLPIIASKHLVLPGGREADKDGWAHRDPMMKPWQDLV
                     THRLLLRSDGGSRSSNSGGGGRAGVVRLAKWHAPEDPAVIRFEIRSEGILLS"
     gene            <44799..>45557
                     /locus_tag="CHLNCDRAFT_16757"
     mRNA            join(<44799..44898,45057..45127,45402..>45557)
                     /locus_tag="CHLNCDRAFT_16757"
                     /product="hypothetical protein"
     CDS             join(<44799..44898,45057..45127,45402..>45557)
                     /locus_tag="CHLNCDRAFT_16757"
                     /note="similar to nucleic acid binding / transcription
                     factor;
                     GO_function: GO:3676 - nucleic acid binding"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51318.1"
                     /db_xref="InterPro:IPR000571"
                     /db_xref="JGIDB:ChlNC64A_1_16757"
                     /translation="YSTDAFRMFSFKIDCCPRLAESHDWTLCPFQHPGEKARRRDPRC
                     YTYHGVPCPDFRKGTCKRGDACTYAHGVFECWLHPSRYRTQLCKEGAACRRSVCFFAH
                     SVEQLRE"
     gene            complement(<48949..>49468)
                     /locus_tag="CHLNCDRAFT_141064"
     mRNA            complement(join(<48949..49037,49142..49262,49352..>49468))
                     /locus_tag="CHLNCDRAFT_141064"
                     /product="hypothetical protein"
     CDS             complement(join(48949..49037,49142..49262,49352..49468))
                     /locus_tag="CHLNCDRAFT_141064"
                     /note="similar to catalytic/ oxidoreductase, acting on
                     NADH or NADPH;
                     GO_component: GO:5743 - mitochondrial inner membrane;
                     GO_function: GO:16651 - oxidoreductase activity, acting on
                     NADH or NADPH;
                     GO_process: GO:6118 - electron transport"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51348.1"
                     /db_xref="InterPro:IPR008011"
                     /db_xref="JGIDB:ChlNC64A_1_141064"
                     /translation="MSAPALNVYRGLLRSASAAFKGDATMLSAAQQEIRAKFEESRHV
                     SDPAQRQQLLQEGSEAADFIRTSIVQAASNERGAFEMKIGEDHLGGLVEEVTPDMKLP
                     KERKKK"
     gene            <49847..>56507
                     /locus_tag="CHLNCDRAFT_55172"
     mRNA            join(<49847..50478,50625..50945,51155..51272,51419..51571,
                     51778..51915,52126..52246,52451..52590,52787..52861,
                     53043..53186,53395..53463,53661..53813,53982..54086,
                     54214..54321,54513..54623,54811..55611,55726..55980,
                     56147..56232,56414..>56507)
                     /locus_tag="CHLNCDRAFT_55172"
                     /product="hypothetical protein"
     CDS             join(49847..50478,50625..50945,51155..51272,51419..51571,
                     51778..51915,52126..52246,52451..52590,52787..52861,
                     53043..53186,53395..53463,53661..53813,53982..54086,
                     54214..54321,54513..54623,54811..55611,55726..55980,
                     56147..56232,56414..56507)
                     /locus_tag="CHLNCDRAFT_55172"
                     /note="similar to RSP_6235"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51319.1"
                     /db_xref="JGIDB:ChlNC64A_1_55172"
                     /translation="MDPTTGTLRRAPAQDLGDSLRSPSVQKFLGRDFGAGSPQQPPPL
                     RHKDGALPGGLYSSEGGIAAYQPAAPPPTMGDSLAADYRSQLQQYAQQLAAKSGEAAA
                     LRQQAAELKQQLAAAEARASHAGQQVARNASAAGQLEAATAALESALQEREAEVQAAA
                     QAKRAAEQAAAAARAQAAAALKSVAAKAAEHEQDRRFFKEQLEAKDSELHSLEDVLRK
                     QAAELERQSREWVAREAEVSAGRSRSAGAAAGTAAELAVAXGKVEAAAKRVRALEGEN
                     GELRRQRAQGAADQRMLEELLGDSEAERSWGRSREAGGCTLGELHDKYVRLGEKLEGL
                     IKEGKLLKSSASAEAGASRTAVQEALKDAEAALKERAGLKAQAHQLQMRLEEEQGRRA
                     QLKESAQRKLAAAEQEVAALRGDMEGKARQLQGLQADMKALQADAESRLGACEKQLAA
                     CQDRAAAVAEELHGERLRLELQQQALRYERRIQELEAHAVQGGGGAGMLRPGSPGVRG
                     SVLDYIPRGEHVRLLEARLAAKEGDLQLEMSSRAEREAQWKLETKEQEIGSLTARTRQ
                     LEDELHGERQRASSQAHALGEEAKRAAAQCVELQRELAARDKEVTRLKETLKDARTAT
                     ADMDDDAMSSGRQELKRCEEAQREAAAHAVAAADAERRGERLAGEVWELEAALEQKQE
                     LVAALQAECDALGAKLMAHREVHQQEVEGQRRQLRQEWEAQVDVLEQRCLGGEALLRQ
                     ARRAHEEALCQLGQQHVEQVGQLESQLAAAERCNAELKELTAALGSVRQEDVEALKDA
                     VQELQGRLREAVRERDRLQRQHREQLAALAGQVRAKMGALRGQQAQLRQSTEADVSAA
                     FAECLASYEAGLGALQQRLEQQTAAADSRQAELGARLSRLGDGMQRLLAALRSAVPQL
                     PEAALQALLGAGRDAGADTGTQLESAVQQVAQAVQQHVEQAEAAAIESALAAVEAEVL
                     PGGSSGGSPASPSRLLSPRKRQQAAAAAAGAAAAAAGPSLEANEGRLARLLGRSQELL
                     AQVAAGDAQVACLRQQVAALEAALSSHQDKFGQAKGEAVQAAEAARAAAVAPLQAEVA
                     RLTERVEGLQQLHASELASIEAQAQATIGRMAAGSASLQAQLRDEGERAEGLAADLAR
                     AQAELAQHTQRAASTIDVQHRELDLLKGRIREVEARDASSQQELRALRQREREAGGGA
                     RQL"
     gene            complement(56550..>58958)
                     /locus_tag="CHLNCDRAFT_37444"
     mRNA            complement(join(56550..56863,57104..57210,57481..57607,
                     57851..58052,58228..58388,58529..58650,58790..>58958))
                     /locus_tag="CHLNCDRAFT_37444"
                     /product="hypothetical protein"
     CDS             complement(join(56714..56863,57104..57210,57481..57607,
                     57851..58052,58228..58388,58529..58650,58790..58958))
                     /locus_tag="CHLNCDRAFT_37444"
                     /note="similar to elongation factor Ts; expressed;
                     GO_function: GO:3746 - translation elongation factor
                     activity;
                     GO_process: GO:6414 - translational elongation"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51349.1"
                     /db_xref="InterPro:IPR000449"
                     /db_xref="InterPro:IPR001816"
                     /db_xref="JGIDB:ChlNC64A_1_37444"
                     /translation="MLFLSALRRACVVPSVQRRWLSAPADRLLLIKELRGQTGAPVND
                     VKAALQTSNWDLDAAMSELRRKGLAAATKKAARHAAEGLVGMARGDGVVAVVEINSET
                     DFVARNSQFRALVGSAAAAALAVSAPRPGCAAELDGEVLRAARMPGGGTLEEAVASVA
                     ASVRENVRLRRGFRLAAPGALVGAYLHQKAGDEAGRIAGLVALASSQPLAGAGAEQAQ
                     ELAHKLAMQVVAAAPRFLDRSAVPAEALEAESRVLREQALSSGKPEKIVDKIVAGRLD
                     KYYGEVCLAEQAFIMDGDLKVQDVLKRTGKQVGSELRLTGFLRVQVGEGLEQEQKDFA
                     AEVAETLKAAA"
     assembly_gap    59798..61744
                     /estimated_length=1947
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    72236..72285
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    73415..77025
                     /estimated_length=3611
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    77916..85684
                     /estimated_length=7769
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    86754..87163
                     /estimated_length=410
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    88477..92497
                     /estimated_length=4021
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(<97587..>106083)
                     /locus_tag="CHLNCDRAFT_141072"
     mRNA            complement(join(<97587..98120,106045..>106083))
                     /locus_tag="CHLNCDRAFT_141072"
                     /product="hypothetical protein"
     CDS             complement(join(97587..98120,106045..106083))
                     /locus_tag="CHLNCDRAFT_141072"
                     /note="similar to ORF2"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51350.1"
                     /db_xref="JGIDB:ChlNC64A_1_141072"
                     /translation="METVMIEAAGMGMSGECVPPLFYADDQALLATTPAGLRFQLGYL
                     ESYCAAWGLTVNTKKTQVVVYTTGRAAATEERFRYGGNEVETVPTFRYLGVHLHCRQA
                     FASAASYRAEAGRRAMHLLRRRLAENGLQDPLLSMRAFKSWLGKQWRTGSHWMAEETG
                     RWQRLDRTQRPCPHCQAPLEDVRHAVYDCS"
     assembly_gap    106266..127878
                     /estimated_length=21613
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    129714..130097
                     /estimated_length=384
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(<131377..>131734)
                     /locus_tag="CHLNCDRAFT_141074"
     mRNA            complement(join(<131377..131463,131597..>131734))
                     /locus_tag="CHLNCDRAFT_141074"
                     /product="hypothetical protein"
     CDS             complement(join(131377..131463,131597..131734))
                     /locus_tag="CHLNCDRAFT_141074"
                     /note="predicted protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51351.1"
                     /db_xref="JGIDB:ChlNC64A_1_141074"
                     /translation="MFGQRETYLDAVRRRQDREALAQLRTGSHWGAEETGRWTRRPRE
                     QRKPCRLAAFAAACHQRWLTATVALPAVSP"
     assembly_gap    131802..132073
                     /estimated_length=272
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    135020..135069
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    143897..143946
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            <153888..>158201
                     /locus_tag="CHLNCDRAFT_7118"
     mRNA            join(<153888..153971,154260..154362,154620..154677,
                     154862..154971,155194..155252,155406..155463,
                     155838..155944,156336..156532,156791..156905,
                     157184..157252,157461..157568,157719..157841,
                     158103..>158201)
                     /locus_tag="CHLNCDRAFT_7118"
                     /product="hypothetical protein"
     CDS             join(<153888..153971,154260..154362,154620..154677,
                     154862..154971,155194..155252,155406..155463,
                     155838..155944,156336..156532,156791..156905,
                     157184..157252,157461..157568,157719..157841,
                     158103..>158201)
                     /locus_tag="CHLNCDRAFT_7118"
                     /note="similar to preprotein translocase"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51320.1"
                     /db_xref="InterPro:IPR011115"
                     /db_xref="InterPro:IPR011130"
                     /db_xref="JGIDB:ChlNC64A_1_7118"
                     /translation="EDVVVEGFAVVREAAHRVLGMRHYDVQLIGGLALHEGQVAEMKT
                     GEGKTLVATLPAYINALTGRGVHVVTVNAYLARRDADWIGKVFSFLGLTVGVVTETST
                     TAEKAQHLQRDITYITARDLAFTYLYDNTATSPGWIAIRRPLHYAIVDEVDSILIGPN
                     RPRASTPPTACLPQPAAPSWCRVQVMEKLWQVERGLVRLATAGDGRLAVVLQSPAKNS
                     AGDVQLAITTVPLPADGGDGGRGRGRGSGSINGGMSGTEEVSPPPPACPVQSWGVFLT
                     LAAKARWCYTKDVHYLVRNNKVVLVDVPTGRERAKSVWQEGLHQAVEAKEGLPVTAEQ
                     RTSSSISYQALFAYYAKLAGMTGTAVTEMMELNESYRLNVVRVPPHRPSARIDRPMRC
                     FYFEKGRDSAVWGLLRDARERGQPVLIGTGSVEESERL"
     assembly_gap    158554..158830
                     /estimated_length=277
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    159852..160258
                     /estimated_length=407
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    164007..164056
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            <164931..>169051
                     /locus_tag="CHLNCDRAFT_141080"
     mRNA            join(<164931..164956,165063..165253,165423..165533,
                     165684..165758,165928..166013,166104..166208,
                     166392..166483,166737..166821,166970..167060,
                     168041..168128,168404..168514,168690..168775,
                     168948..>169051)
                     /locus_tag="CHLNCDRAFT_141080"
                     /product="hypothetical protein"
     CDS             join(164931..164956,165063..165253,165423..165533,
                     165684..165758,165928..166013,166104..166208,
                     166392..166483,166737..166821,166970..167060,
                     168041..168128,168404..168514,168690..168775,
                     168948..169051)
                     /locus_tag="CHLNCDRAFT_141080"
                     /note="similar to unknown protein;
                     GO_function: GO:3824 - catalytic activity"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51321.1"
                     /db_xref="InterPro:IPR001932"
                     /db_xref="JGIDB:ChlNC64A_1_141080"
                     /translation="MRLARAVSRNLSTLSSACRTRPAPLPRLTYHLRPPPPRLGPMES
                     EKLGAAAGLATRAERLGHQGEAAGREAPGEGPVGDKRAQVGDVSPGRLHPQPPASDMP
                     RANLKAAGAARPDTNHSDGPSLAVHIGVSDEQGQRSYMEDRHTVIPDFRPKGAADPAL
                     PRQFVAVYDGHSSHHGSEHASRRVHQFVAAQPAIQQCSGAACDQEAVQAALKAAFEAA
                     DTEIVETAVQDGKRYGTTAVCALRMGQTVYVAHAGDSRAVLCRDGRAVTLTRDHKPAS
                     VPQERERIEAQGGHIAYDADRVLSNPEGQRRSRLAMSRCCLALGDPDFKTPRRLVEAE
                     PDVARVELRPHADSFMLLGSDGLFDVMSGQEAVDAASRVLASSKANLSSAVAEAAADA
                     LVRKAMQDGTSDNVTALIMAFDWD"
     gene            <170041..>171717
                     /locus_tag="CHLNCDRAFT_141081"
     mRNA            join(<170041..170053,170256..170413,171057..171146,
                     171337..>171717)
                     /locus_tag="CHLNCDRAFT_141081"
                     /product="hypothetical protein"
     CDS             join(170041..170053,170256..170413,171057..171146,
                     171337..171717)
                     /locus_tag="CHLNCDRAFT_141081"
                     /note="similar to variant-specific surface protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51322.1"
                     /db_xref="JGIDB:ChlNC64A_1_141081"
                     /translation="MLAFGAPAAAIACIPNHRFPIYADGSLGGCKYCALDGSRCELCW
                     PGYGLTSAGECVRETCVDCPGDPSRCSQCVDGYFPNADGVCELCAPGCAVCAPDSPQL
                     CRLCDAQRAFQLDLDTQTCILCDNPACMACPDAPNECLECSSQAAALAPHPVEVPPAA
                     LEPVNGTCVPCPAGCADCTSPDYCSLCSAEGHFSSPDAGACLPCSDPRLRQLQ"
     assembly_gap    170811..171051
                     /estimated_length=241
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(<174543..>176246)
                     /locus_tag="CHLNCDRAFT_55178"
     mRNA            complement(join(<174543..174747,175406..175553,
                     175740..175789,175977..176103,176201..>176246))
                     /locus_tag="CHLNCDRAFT_55178"
                     /product="hypothetical protein"
     CDS             complement(join(174543..174747,175406..175553,
                     175740..175789,175977..176103,176201..176246))
                     /locus_tag="CHLNCDRAFT_55178"
                     /note="predicted protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51352.1"
                     /db_xref="JGIDB:ChlNC64A_1_55178"
                     /translation="MAPSQEANSVIGALGGAVLAACLAPQLWKLYRTRSARDLSYLYL
                     CMYDAGLLLTFIYLYYEGAFAGWVCVLVELGFGCTMVAAKTWLDHFGPHSPRATQRPK
                     PQAEASADAKLPSSPSPASEVSDGYAMAFFFGSTGELSITFLAASDATALLMGSAAQL
                     FYEQLQAAYAGSRVTASTASWTAPAVGSSSR"
     assembly_gap    176677..177968
                     /estimated_length=1292
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    178848..179679
                     /estimated_length=832
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            <179779..>182124
                     /locus_tag="CHLNCDRAFT_28109"
     mRNA            join(<179779..179903,180132..180286,180571..180705,
                     180912..180997,181191..181321,181788..181860,
                     182092..>182124)
                     /locus_tag="CHLNCDRAFT_28109"
                     /product="hypothetical protein"
     CDS             join(179779..179903,180132..180286,180571..180705,
                     180912..180997,181191..181321,181788..181860,
                     182092..182124)
                     /locus_tag="CHLNCDRAFT_28109"
                     /note="similar to PBPRB1916; expressed hypothetical
                     protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51323.1"
                     /db_xref="InterPro:IPR007466"
                     /db_xref="JGIDB:ChlNC64A_1_28109"
                     /translation="MPEEDWAVDYEAGRKLIEATGSRVFEAPIHIEGGSIHSDGEGTL
                     VVTEECLLHPSRNPHYGKAGIEAVLKEYLGLEKIIWLWKGVAGDDSVVNGHVDNFCCF
                     IAPGVVALAWPNDENDFNDPQWEISIDAYERLSNTTDAKGRKLTIVKVPCPPAIFRTY
                     KEAGGLLADHYDKGYTPRIPGERLSASYINHYKANGGAVLSKVCACVHARMYLDPNCK
                     TVNVESREVLLNAGNVHCITQQQPAEW"
     gene            <182881..>185812
                     /locus_tag="CHLNCDRAFT_141086"
     mRNA            join(<182881..182967,183043..183501,183681..183785,
                     184007..184121,184392..>185812)
                     /locus_tag="CHLNCDRAFT_141086"
                     /product="hypothetical protein"
     CDS             join(182881..182967,183043..183501,183681..183785,
                     184007..184121,184392..185812)
                     /locus_tag="CHLNCDRAFT_141086"
                     /note="predicted protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51324.1"
                     /db_xref="JGIDB:ChlNC64A_1_141086"
                     /translation="MALKRGLRFTASLGKTPKESRILLLEVAQDGVKCSHTGGDAWCF
                     VTAESGAAAAGDDSEEGAPTGPQKCNAWDRKGRNPAMNVYVHLGSSTGDTDSSGPGGS
                     SGEGGGGGEEAAEEGPVRCKLGVLVQHALPKLAGQVGGYAGLGLDWVTWTAEGSGGAP
                     RIATVAGVGEQDDEHWGRLRQLTISWQAKEKETGAGTTTGSLQPPDSAEEVALRRAKE
                     TLVEAARFFGPEAVARVGRLTVRKLYQREYHFFDGEADVADSRRHALEWAVGLAAVEH
                     MLAVNYDARAKLNERLSGPGSGGGGGGAPLRKRPRPPGAPPAGGGGSRRVLLSAGGGS
                     PRDPFTGLPRAAATPAGAAAAAAAAAGLPVALPVARSAGARQADATAAMHGVLAPAAP
                     LQGLAGLLAPPQLAALQQQVLQRPAESTARVPAAAAAAAAALPPPAAAPTPTAATPAA
                     SMAFSDWLLHLQAPEPSTVSYGMLQQQQQQQQQQQAGGSPTAPAEPGLRSAGGSHQQL
                     PLLGELSGVLAHSPAAAPLQALQPAAPAAGSTALGQLPGQQQAAQAAAQAAAQAAAQQ
                     AELVPLDAALDAWEQHDAVRRQLDEAQRQLAQRDRELASLRQQLAAAQQRLAGQPAPA
                     GAAGGSSGGSSPRGVLEDTAAAAKAAAKAAAAAQLADLQALLPQGLRLQLSQLFSQRQ
                     ELLPFAGAIQELSCRAVEQALGVYATLATAAAVPAPALALPPQPPY"
     gene            <186521..>189476
                     /locus_tag="CHLNCDRAFT_141087"
     mRNA            join(<186521..186622,186752..186829,187001..187117,
                     187251..187449,187775..187848,187995..188141,
                     188306..188379,188557..188648,188817..188895,
                     189068..189190,189329..>189476)
                     /locus_tag="CHLNCDRAFT_141087"
                     /product="hypothetical protein"
     CDS             join(186521..186622,186752..186829,187001..187117,
                     187251..187449,187775..187848,187995..188141,
                     188306..188379,188557..188648,188817..188895,
                     189068..189190,189329..189476)
                     /locus_tag="CHLNCDRAFT_141087"
                     /note="similar to binding"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51325.1"
                     /db_xref="InterPro:IPR000408"
                     /db_xref="JGIDB:ChlNC64A_1_141087"
                     /translation="MQASSGISVLQASRAVSSLAHGAAAVLSWGLGQQGALGIRSDRD
                     HYEPEHIPDLPDNVVAGQLFAWGRNKEGQLGRVLAPGEFDFSAAPQPVEALSKEHIVA
                     ATGSGVASFALSRHGALFVFGASKRGQLGLGPGQPSAPHPQQLRLPAAAVQVSAGWGH
                     AAALLDEDEEEGRLVERSCWEPRRVDLLAGMVCGFDHTMVLAEDGSLFTMGDNSLGQL
                     GRPSQPQARPGAAAAAGCSLPGEHLAPSCASSWIVNPEADCGRRINHPRPQVAAGLGH
                     CLGVLADGGVVSWGWNGGGQLGLGQFVTEECIPRPTPIYGIPANRHALIAAGRVHSVL
                     ATDEIADRGSAFEAQGCAKAPVLTMCHSWGSAANGRLGTGQLEDSHFPELVPDLDGEQ
                     IVGLACGLDHTLALVRSM"
     gene            <193309..>195169
                     /locus_tag="CHLNCDRAFT_28112"
     mRNA            join(<193309..193416,193797..193868,194200..194305,
                     194681..194803,195093..>195169)
                     /locus_tag="CHLNCDRAFT_28112"
                     /product="hypothetical protein"
     CDS             join(193309..193416,193797..193868,194200..194305,
                     194681..194803,195093..>195169)
                     /locus_tag="CHLNCDRAFT_28112"
                     /note="similar to putative SKP1-like protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51326.1"
                     /db_xref="InterPro:IPR001232"
                     /db_xref="JGIDB:ChlNC64A_1_28112"
                     /translation="MVVGKDLAMMSPYIQREVVQNGYGLPGNPPVTLPKQVSAAAWEM
                     VEEYCAFHAVPGRSDKERRLFDDRFIRRDSGQLCDLTSAADCLEMRGLVDLASRAIAR
                     LIEGKSAEQIREAFRLPDDLSEEEKLEPIAALAGGAPDPRVRMLNRLYAKRRKELQQR
                     RQ"
     gene            complement(<198026..>198886)
                     /locus_tag="CHLNCDRAFT_141091"
     mRNA            complement(<198026..>198886)
                     /locus_tag="CHLNCDRAFT_141091"
                     /product="hypothetical protein"
     CDS             complement(198026..198886)
                     /locus_tag="CHLNCDRAFT_141091"
                     /note="similar to ankyrin repeat domain 39"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51353.1"
                     /db_xref="InterPro:IPR002110"
                     /db_xref="JGIDB:ChlNC64A_1_141091"
                     /translation="MNQVDQINYAARVGNEAAVRQLLAAGARADQPDGYGWLPLHSAS
                     RYGHEGVVRLLLEAAPDAAMAADTGGFTPLHHAAGASSSGAGNYEIVHLLLEAAPTAA
                     LMLNMIKEAPIHIAALRNNTAPVQLLLEAAPEVAYAQDAAGRTPLQWGLSYCFERPSE
                     QVMETARCLLRAAPAMQPALGILLQHGRRSATLFANLVAHLPLSQEQWRSIPAPCPDL
                     ARALPAVLQRSAAEAGWLVGRLYQYQRKRLRAAALSLARAQQQNSAVLPAELSGRILA
                     LSAGRLAPLQ"
     gene            complement(203510..206210)
                     /locus_tag="CHLNCDRAFT_59258"
     mRNA            complement(join(203510..204311,204529..204599,
                     204800..204857,205094..205165,205339..205861,
                     206157..206210))
                     /locus_tag="CHLNCDRAFT_59258"
                     /product="expressed protein"
     CDS             complement(join(204092..204311,204529..204599,
                     204800..204857,205094..205165,205339..205861,
                     206157..206166))
                     /locus_tag="CHLNCDRAFT_59258"
                     /codon_start=1
                     /product="expressed protein"
                     /protein_id="EFN51354.1"
                     /db_xref="JGIDB:ChlNC64A_1_59258"
                     /translation="MLTDHQEAAAGEDWELVSSSDDGPADEAALVATFLLAEPSAAGL
                     AAAAGRIIGGGESGDEEGDKGAAAAALAGAPAPGSPELAQLLLLTAAPAPAPEGGATA
                     EHAALLPAAAGTGPGAGAFGAAQRVAAEAAEVAATSEVFRSRLAALPPAQGARAGASS
                     AAAERAPPPQQAARPPASVTLRVVRADEQEAMLRAVAEMERRSSQREQELALARIRLT
                     SAQAALAQESREAHRFRRIAMVACSVCAFLGLKALLGGPLRQAGVAAAGAVQPAAAAA
                     RGVGLTAHSVHEPCAAAAAAARELEGRVAVLVEPLVPGLAG"
     gene            <206781..>211022
                     /locus_tag="CHLNCDRAFT_141094"
     mRNA            join(<206781..207087,207265..207373,207636..207733,
                     207929..207988,208357..208466,208773..208832,
                     208982..209037,209287..209360,209548..209720,
                     209928..210076,210323..210411,210659..210857,
                     210914..>211022)
                     /locus_tag="CHLNCDRAFT_141094"
                     /product="hypothetical protein"
     CDS             join(206781..207087,207265..207373,207636..207733,
                     207929..207988,208357..208466,208773..208832,
                     208982..209037,209287..209360,209548..209720,
                     209928..210076,210323..210411,210659..210857,
                     210914..211022)
                     /locus_tag="CHLNCDRAFT_141094"
                     /note="similar to P0481E12.18"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51327.1"
                     /db_xref="JGIDB:ChlNC64A_1_141094"
                     /translation="MLGARWLATRCLGHAAKLLAAAALVALLAPAAAAAADQPLPPDA
                     FLNADGLPLMMPVNRSTAGRRWYFEIPRDPVGLLVMLHRCGRNAEDFWPPSSVCPQCI
                     GMPEAVSISRQALARGYALLAINSFNRTVGSLGRCWSWGTDAVAVRDIVAAFRKRHAL
                     ADLPLFFTGCSSGGSLALRLPGIMAMDGIMPVAIGLEEDVFPATDPSLKFPYPPVAYV
                     HFADDDNTDRKVAGMLRISEEAGLAAAEVKVGKFAIGRDFFSQRDPMVSPALSELVHQ
                     ALRELNVLDEHKILVDDWERQGKPAPWDAMLREELPGMVKVTRKQQLALKNGSTLAQA
                     QQALGAAGEELLTIQEVSAEQVAASEAATNQEDANPNFSSSDGSSPAGGADDPYLSAQ
                     LLLEHIQEELAVAWAHHTNLGDYTAATLMWLERCGKASYPNLVETKAVADPAALSPVR
                     TVKAAQVLPAWNACQAGGGAAEVAEALGGTALGGGGGGGNASAPGCGGNASAPGSAAG
                     RGRGVGAAAAAAAAAAAAMLLH"
     assembly_gap    212278..213963
                     /estimated_length=1686
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            <214756..>217058
                     /locus_tag="CHLNCDRAFT_55184"
     mRNA            join(<214756..215011,215177..215285,215452..215549,
                     215695..215754,215872..215981,216107..216166,
                     216277..216370,216648..216801,216962..>217058)
                     /locus_tag="CHLNCDRAFT_55184"
                     /product="hypothetical protein"
     CDS             join(214756..215011,215177..215285,215452..215549,
                     215695..215754,215872..215981,216107..216166,
                     216277..216370,216648..216801,216962..217058)
                     /locus_tag="CHLNCDRAFT_55184"
                     /note="similar to P0481E12.18"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51328.1"
                     /db_xref="JGIDB:ChlNC64A_1_55184"
                     /translation="MPSGASTAALAALALLPLALAGAPADASLNAAGLPLMTPTSASA
                     ANHTYYFEIPIDPVGLLVMLHRCGRSAEDFWPPSGACPECIGMPEAVSISRQALARGY
                     ALLAINSFNRTVGSLGRCWSLATDALPVRELVTAFRQLHGLADLPLFVTGCSSGGLLA
                     LRLPSFMALDGIMPVAIGLDLDSFPPNLPRQNHTYPPVAYFHFSRDNTTTTQVEAMVE
                     FSQAAGLPASQVTVQPSQFTPDFFSQRDPLIRHAGATRRMPRAGEGWTEEVSTVELRQ
                     EVERVAEAAGAVSSYCVAESGDGTAADLTPDLLYHHVLEELGVAWAEHTNLGDYTAAT
                     LVWLERCGTGE"
     gene            complement(<218133..>219622)
                     /locus_tag="CHLNCDRAFT_28106"
     mRNA            complement(join(<218133..218279,218521..218657,
                     218926..219028,219229..219334,219483..>219622))
                     /locus_tag="CHLNCDRAFT_28106"
                     /product="hypothetical protein"
     CDS             complement(join(218133..218279,218521..218657,
                     218926..219028,219229..219334,219483..219622))
                     /locus_tag="CHLNCDRAFT_28106"
                     /note="similar to unknown protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51355.1"
                     /db_xref="InterPro:IPR005269"
                     /db_xref="JGIDB:ChlNC64A_1_28106"
                     /translation="MADSQPASFRKIAVFCGASSGSNPLYIEAARLLGAEMARRGIGL
                     VYGGGNVGLMGAVAEAVGSRLGPDQVIGVIPAALEPREISGTTVGEIRVVGSMHERKA
                     MMFEEADAFIMIPGGYGTLDETLEITTWQQLGFHTKPVGLLNINGFFNKLLAFLDHAT
                     QEGFIRPSSRAILVSGDTPGELIDTLAAYQAPPSLLRLASEGKLGVHERG"
     gene            <220601..>222497
                     /locus_tag="CHLNCDRAFT_28123"
     mRNA            join(<220601..220693,220882..220942,221242..221271,
                     221444..221661,221931..222035,222345..>222497)
                     /locus_tag="CHLNCDRAFT_28123"
                     /product="hypothetical protein"
     CDS             join(220601..220693,220882..220942,221242..221271,
                     221444..221661,221931..222035,222345..222497)
                     /locus_tag="CHLNCDRAFT_28123"
                     /note="similar to synptobrevin-related protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51329.1"
                     /db_xref="InterPro:IPR001388"
                     /db_xref="JGIDB:ChlNC64A_1_28123"
                     /translation="MPLIYSFVARGNVVLADYTSYTGNFSTVALQALEKGGQGANAKF
                     TYSCDGHTFNYLSSNGYTFLVVADEQFGRQIPFAFLERVREEWQQKWAEKGPAATAHS
                     LDKSFGPRLKHWMEYCEQHPEELSKVASVQKKVDEVKNIMVDNIEKVLERGEKIELLV
                     DKTDNLRFQADKFHKTGRQLRSRMWWQNMKMKLIIVAILLLIAVIIFCAVCFSGGNCL
                     K"
     assembly_gap    222062..222111
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    230292..230341
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(<230818..>261110)
                     /locus_tag="CHLNCDRAFT_59259"
     mRNA            complement(join(<230818..231219,231561..231585,
                     231769..231857,232133..232292,232768..232859,
                     233240..233366,234989..235046,235572..235860,
                     235915..235970,236838..236925,237163..237380,
                     241099..241215,241562..241639,241862..241936,
                     242776..242815,243106..243174,243390..243443,
                     243640..243678,243872..243879,256284..256387,
                     256621..256676,256869..256922,257125..257158,
                     257421..257542,257837..257907,257980..258094,
                     258175..258307,259004..259095,259315..259408,
                     259722..259837,260112..260212,260423..260671,
                     260724..260885,260969..>261110))
                     /locus_tag="CHLNCDRAFT_59259"
                     /product="hypothetical protein"
     CDS             complement(join(230818..231219,231561..231585,
                     231769..231857,232133..232292,232768..232859,
                     233240..233366,234989..235046,235572..235860,
                     235915..235970,236838..236925,237163..237380,
                     241099..241215,241562..241639,241862..241936,
                     242776..242815,243106..243174,243390..243443,
                     243640..243678,243872..243879,256284..256387,
                     256621..256676,256869..256922,257125..257158,
                     257421..257542,257837..257907,257980..258094,
                     258175..258307,259004..259095,259315..259408,
                     259722..259837,260112..260212,260423..260671,
                     260724..260885,260969..261110))
                     /locus_tag="CHLNCDRAFT_59259"
                     /note="similar to EMB2733;
                     GO_function: GO:3676; helicase activity - nucleic acid
                     binding [Evidence 5524] [PMID 4386]"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51356.1"
                     /db_xref="InterPro:IPR001650"
                     /db_xref="InterPro:IPR007502"
                     /db_xref="JGIDB:ChlNC64A_1_59259"
                     /translation="MADKATRAWVEDQLYALLGKLPPPPPATPPPLFAHCTLPQEALP
                     LGHGFAERALVDYCVSLGKKAKDAGALASTLEGQGLPPGGTTRQFAADLMARLPRGGE
                     AAAFARKQQQYALLADDEEEREEEERRRQQQQQEAQRQREQQQDGGGGGKKAHLRKSR
                     QEADGEDDTVVKKKSRKRAWEEDEEDAAAAAEKRKVEEREADLREREEFEQRLKERDE
                     ARTRKLAEKRIPKEELEEAERRRRAEEAEDRKGTIATLRDVSRQEYLKKREDAKLEEL
                     KEALEDEKYLFQGVKLTDKERRDLEYKEQVYRLAVERKKQLGGDVEAEEEAETPWAQQ
                     EAFEAQQIKKASAAYGAKDKAAAAGEWWGAVHGGGGTSAPKHLRGAAVLLLGRGRTAG
                     STPHMQQGPASYDYVFEDQIEFIVDQYLAGSAPDMEESKEERMKREREEREAEQRSEF
                     EQIQAARKLLPMFPYRADLLRAVEAHQVIIIVGETGSGKTTQIPQYLYEAGYGKLGRI
                     GCTQPRRVAAMSVAARVAQEMGVKLGNEVGYSIRFEDCTSDMQAKIFEPTPPGARKVV
                     IATNIAETSLTIDGIKYVIDPGFCKQNSYNPRSGMESLQVTPISKASALQRAETMFRA
                     LEQLYALGALNDKGELTTMGRKMAEFPVDPMLAKMIIQSEKYGVSEEVATIAAMVSIG
                     GSVFYRPKDKAVHADNAHKTFHLGNVGLLEQLLLPALEGSRYGSTAVQLSRNPPLLLP
                     PRLTLKAGTAAVHGGVPMPSGAVGGLPSSTPLLRLCWLCCGVKVGKSLHRLNFPVLTS
                     SFRPLLDLPDAPMLTTKEYMRVVSEILPEWLLARSCLMAGCPYACLPAHLLPCLPVAI
                     ACLPSSQLLGPVSTWCSQGKNKGPCQPLSTRSLNMSLADMGLVVRGLSAHVGKRHVNA
                     ENKLLVNLLSTCILPSCSHAPTRQNADTGVRQTYTHASVKVQRYIEDVWGGSLSTEAY
                     TPASFLCDVPERRRRVRAASASASSGQRHPHHPHHHLTHSLAIARWSAHAAYHSGVTV
                     TPRSNIGLKLDVKTRKLSLWSLGSSPPLPLPFTSGIPFQQLVEIAPHYYSKKEIMEQA
                     AKKLPKTLGKAADRHCVCHITVQRYIEDVWGGSISAEAYTPASFLCDVPERRRRVRLA
                     QWRTGSHWMAEETGRWQRLDRTQRPCPHCQAPLEDVRHAVYDCPLYAGLREEYAELFH
                     SPGHALPSLAAFLGQARQGRLARFADRCHEEHAAALAQ"
     assembly_gap    231374..231423
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    238775..241006
                     /estimated_length=2232
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    242111..242751
                     /estimated_length=641
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    243955..256267
                     /estimated_length=12313
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    258469..258611
                     /estimated_length=143
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            <261521..>262161
                     /locus_tag="CHLNCDRAFT_141109"
     mRNA            join(<261521..261548,261653..261705,261828..261896,
                     262039..>262161)
                     /locus_tag="CHLNCDRAFT_141109"
                     /product="hypothetical protein"
     CDS             join(261521..261548,261653..261705,261828..261896,
                     262039..262161)
                     /locus_tag="CHLNCDRAFT_141109"
                     /note="similar to Autophagy protein Apg12;
                     GO_component: GO:5737 - cytoplasm;
                     GO_process: GO:45 - autophagic vacuole formation"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51330.1"
                     /db_xref="InterPro:IPR007242"
                     /db_xref="JGIDB:ChlNC64A_1_141109"
                     /translation="MSGQPADSKVVILFKQTGDAPILKQNKIDGQERFAKLVDFLRKK
                     LGRDQVFMYLKEAFSPSPEERIATLHDAFAVDGRLVVNYALTPAWG"
     gene            <262427..267344
                     /locus_tag="CHLNCDRAFT_59260"
     mRNA            join(<262427..262547,262778..262869,263543..263630,
                     263823..264046,264339..264402,264616..264666,
                     265072..265330,265550..265615,266107..266268,
                     266508..266882,267056..267344)
                     /locus_tag="CHLNCDRAFT_59260"
                     /product="hypothetical protein"
     CDS             join(262427..262547,262778..262869,263543..263630,
                     263823..264046,264339..264402,264616..264666,
                     265072..265330,265550..265615,266107..266268,
                     266508..266882,267056..267164)
                     /locus_tag="CHLNCDRAFT_59260"
                     /note="similar to unnamed protein product"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51331.1"
                     /db_xref="JGIDB:ChlNC64A_1_59260"
                     /translation="MTRYFLMRCADARLLYVAHKRGVWPVSYGVVDRLNEAFAAGEPI
                     TLIFTISGSGAFQGAARMLTAAGTSEGPAATPPLRPCCSNPLSQPQQPVRAGKDGTEI
                     EASVAEELLGLLERAKAAPKPEPPPGGGGEGRQQQQQAARGGGTPPGVVAGLGPVPAM
                     VGAGLMGMPDASFMMGMNPLMAMAMMNPMAAMGMGAGMMNPMAAAMMAMGHMPGMMPG
                     LRPAVMPGPGGAGALAGATGGADAGAAVKAEPGVKAEPGVERLQDGLPPGFGAGGGGG
                     RYRERDERYDRERERYYGPRGGYRDGPPFRDGPPPNGFRDGLPMYRDGPPPRDHDRFF
                     ERGPPGRGPAPGIDHGQRDFREGPPPSRHACTNALAGRGREGEYGGPPGGRPRERDDR
                     PDLLRMSYEEYVDRFSQLKEVQGGKPAPAATAAAASAASGGEGKENGAENGAAESGGG
                     DGGGGGDAAGGGGGEPGGGGGPAAAAEGGVGGGGPNLQAMAEDEYVEYCQRFSAQMGM
                     PFDADMVRQHYRGAKAALAQAAAAGGGG"
     assembly_gap    263099..263452
                     /estimated_length=354
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(<272352..>273323)
                     /locus_tag="CHLNCDRAFT_141112"
     mRNA            complement(join(<272352..272778,273076..>273323))
                     /locus_tag="CHLNCDRAFT_141112"
                     /product="hypothetical protein"
     CDS             complement(join(272352..272778,273076..273323))
                     /locus_tag="CHLNCDRAFT_141112"
                     /note="predicted protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51357.1"
                     /db_xref="JGIDB:ChlNC64A_1_141112"
                     /translation="MLRLLLPTSRSCAGSPRLPGRSGAVDSWTPAPPLPAQRPGLKRK
                     LEGGPAPLVVLLSLPSSSSASACPRHAAPQPVLALVIPGPPVSLPPATWPPALADAAA
                     DGTSTTALPSLRSLHLPPPPAAPVAPVQAPSMRLLPAPPPPAPAARPASPDRPASATG
                     GDAALWPDCSLLTTGADWSLGTDVLGPCGMAWEGGLDPAEAARLDAALAALDAEPSPP
                     PAAFWL"
     gene            complement(<279710..>283119)
                     /locus_tag="CHLNCDRAFT_141115"
     mRNA            complement(join(<279710..280465,280798..281103,
                     281429..281591,281827..282421,282643..282799,
                     282886..>283119))
                     /locus_tag="CHLNCDRAFT_141115"
                     /product="hypothetical protein"
     CDS             complement(join(279710..280465,280798..281103,
                     281429..281591,281827..282421,282643..282799,
                     282886..283119))
                     /locus_tag="CHLNCDRAFT_141115"
                     /note="predicted protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51358.1"
                     /db_xref="JGIDB:ChlNC64A_1_141115"
                     /translation="MANQQLEVLEQLAELAPTQFLERTPGGQSTLRELYSQAAEADLV
                     PSSAAADDIARLHGLWEVALDHGMGGLVLDYLSQVCFDRLRTSSDPLESFLMDGECVR
                     RWVQKLLAVSRGRLASWLARGLSSAGGAGILAKELGRLQMLHLVAEGLQPHADGGSTQ
                     PAATTTAAAAAAAAAAEAGELAEASRLLLCARVLAWLSQQRLAFERTTGRFFSEQEWR
                     SVAAKRREGAAAAAGGGGGLFLSDLLSELARHGPDSPAYPPSSADRLLSALFLAPGGS
                     GSGGAAAAGGGTFSGTFSGTPGEAALHARLALLAYYLADGGFMQAEAVVEGLRAHFGV
                     PPATAAGWLLQQLLDESGGGGAAGAAALQRAAQLVPGADGAGLPHRVLQVLVGRGRPD
                     LAVLLLRQRPESAGGPGEAAAALAVRFQAGLLTEAILGVKRALAAADGGGDGGADAAP
                     LLGQLLQYAAATRGPDGMTLVHAVARMPWRAAEEEAVVGWLEGQAAGGQLEAALMLPL
                     YFLLRGRTPEALHAYARQCPATPTTQQQADLAELLAEAARMLPAPQRALVVRRGAAPA
                     LLPADGGEEGGGVALMAAIPAVAADVAPAMLAVGPSPAQAPLVGSVPVLLERRRMAAL
                     AAARAAAADGGRDAHEPGAATAPRGGAAQQQPPALLFGQQQPAAAAAADASPAPSAVF
                     GATGKEALASSAVFGGGAAVAHEFDRVLGLGSGRPAAAGARGGKRRWAGGSAYR"
     gene            <283843..>287294
                     /locus_tag="CHLNCDRAFT_141116"
     mRNA            join(<283843..283929,284085..284147,284305..284420,
                     284665..284925,285125..285387,285619..285701,
                     286059..286224,286438..286526,286756..286831,
                     287182..>287294)
                     /locus_tag="CHLNCDRAFT_141116"
                     /product="hypothetical protein"
     CDS             join(283843..283929,284085..284147,284305..284420,
                     284665..284925,285125..285387,285619..285701,
                     286059..286224,286438..286526,286756..286831,
                     287182..287294)
                     /locus_tag="CHLNCDRAFT_141116"
                     /note="similar to unknown protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51332.1"
                     /db_xref="InterPro:IPR005491"
                     /db_xref="JGIDB:ChlNC64A_1_141116"
                     /translation="MSSPGLQALQTEAYTAVCRAFYAQESLRWEQEDVLTKLRDFWNI
                     SNQMHSTITSEMRSDPDVVAVRSGGMPSRGGRGKNAMLAPAPSIGAAGQQAPPLVKQQ
                     SAEQLAYAPPPPPRRRQALPAVSEGTSLSSGEVSAYSEGSERSSKLLQRGRSKKGTSK
                     GRAGGGGGSGASKARAGSLGQQPSVRRAGPARPLGAPGGGLGAPMGSGVQRLASGMQR
                     SRSTRQNNGFGGAVDPLGYVGRRLWRFWPLESPPWVEGFIQQWNPDDDGYVIVYDPNT
                     RESTEEVFHFATAVEGGDYVVGEYVDMTQVHGSRRQLEKPYVPPEVLAQGPPPGLLAA
                     LAPAPSKKRKSVSGAPVPADAPFEPTYLHARLPVAAEDELQQMLAVLERKERIVEAEI
                     NILEYQEANREDIEKRSALERRFQELCDREAALMAEMAALREVVAV"
     gene            <290359..>291600
                     /locus_tag="CHLNCDRAFT_141118"
     mRNA            <290359..>291600
                     /locus_tag="CHLNCDRAFT_141118"
                     /product="hypothetical protein"
     CDS             290359..291600
                     /locus_tag="CHLNCDRAFT_141118"
                     /note="predicted protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51333.1"
                     /db_xref="InterPro:IPR000225"
                     /db_xref="JGIDB:ChlNC64A_1_141118"
                     /translation="MASATYIPALLRLLHSAGERQAVQAARTLVNLCCESDDHLAAIV
                     AAGGIPALAHCITSSDASNDLLEAAAMLLRNISVDSPGNAAAIAAAGAISPLVQCLCS
                     SRSETVQVETATALTALAAVSPDCRVAIAASGGIPALVQHLRSSSGSSERMQRQAMLA
                     LANLIADPGNRASIVAAGVIPALVQLISSIGASDDLLEAASLLLRNLSVDSPGNAAAI
                     AAAGAISPLVQCVSSCSEAVQGQAAAALSGLAVDSSDRRMAIVAAGGIPLLVQLLRNS
                     SSNSNSELVQLQAARVTGVLMQGSEIREAFVAAGAIPLLVQLLRSSSSQQVQIAASFA
                     LRCLSVDSPGNKAAIGAAGAIPLLVQLLRNTASEELQIVAAQALGCLSVDSPGNQAAI
                     GAAGAIPVLVQLLRSSAGEEV"
     gene            <293539..>300641
                     /locus_tag="CHLNCDRAFT_141119"
     mRNA            join(<293539..293637,293981..294260,294493..294581,
                     294876..294993,295454..295531,296623..296697,
                     297028..297137,298782..298866,299145..299191,
                     299481..299534,299836..299911,300219..300310,
                     300576..>300641)
                     /locus_tag="CHLNCDRAFT_141119"
                     /product="hypothetical protein"
     CDS             join(293539..293637,293981..294260,294493..294581,
                     294876..294993,295454..295531,296623..296697,
                     297028..297137,298782..298866,299145..299191,
                     299481..299534,299836..299911,300219..300310,
                     300576..300641)
                     /locus_tag="CHLNCDRAFT_141119"
                     /note="similar to ATP synthase beta subunit; expressed;
                     GO_component: GO:16469 - proton-transporting two-sector
                     ATPase complex;
                     GO_function: GO:5524; hydrogen-transporting ATP synthase
                     activity, rotational mechanism - ATP binding [Evidence
                     46961] [PMID 46933];
                     GO_process: GO:15986; ATP biosynthesis - ATP synthesis
                     coupled proton transport [PMID 6754]"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51334.1"
                     /db_xref="InterPro:IPR000194"
                     /db_xref="InterPro:IPR000793"
                     /db_xref="InterPro:IPR004100"
                     /db_xref="JGIDB:ChlNC64A_1_141119"
                     /translation="MALSALRGGVQGLLSAPAPVAAAAAGLPSALQMVIGAVVDVHFE
                     GDLPPILSALEVANHEIRLVLEVAQHIGDHTVRTIAMDATDGLMRGQGVINTGEPIKV
                     PVGRETLGRIMNVIGEPVDEKGPIPAKVTWGIHREAPLFVDQGVEQEILTTGIKVVDL
                     LAPYQKGGKIGLFGGAGVGKTVLIMELINNVAKGHGGFSVFAGVGERTREGNDLYREM
                     IESGVIKLGDKQMESKVTLVYGQMNEPPGARARVALTGLTVAEYFRDEEGQDVLLFVD
                     NIFRFTQLGIYPAVDPLDSTSRMLNPRILGDEHYGVARGVQKVLQDYRNLQDIIAILG
                     MDELSEEDKMTVARARKIQRFLSQPFAVAEVFTGTPGKYVELKDTIADFKGVLDGKYD
                     DLPEMAFYMNGDIKEVMDKADRMAAEIAGK"
     assembly_gap    297353..298358
                     /estimated_length=1006
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(<301390..>302486)
                     /locus_tag="CHLNCDRAFT_141120"
     mRNA            complement(join(<301390..301403,301829..>302486))
                     /locus_tag="CHLNCDRAFT_141120"
                     /product="hypothetical protein"
     CDS             complement(join(301390..301403,301829..302486))
                     /locus_tag="CHLNCDRAFT_141120"
                     /note="predicted protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51359.1"
                     /db_xref="InterPro:IPR000225"
                     /db_xref="JGIDB:ChlNC64A_1_141120"
                     /translation="MASASYISSLLGRLHSGSDHQALQAARTLLDLSCDSDDHLAAII
                     AGGDIQALVQLISSSDASDDLLEAAALLLRKLTVDSPGNNATFAMAVGITGLVQHLRV
                     SRSSDRVQTQVIAALANLIQNPELGVAATASGVIPLLVQHLRSGCSEDMQLAIAMSLG
                     SIATCSSAGRAAIGAAGAIPLMVQLLRSSGSEEVQVAAAGALGCLSWDSPESSAAIAA
                     AGARV"
     gene            complement(<303301..>304668)
                     /locus_tag="CHLNCDRAFT_141121"
     mRNA            complement(join(<303301..303314,303504..303864,
                     303967..304119,304222..304248,304480..>304668))
                     /locus_tag="CHLNCDRAFT_141121"
                     /product="hypothetical protein"
     CDS             complement(join(303301..303314,303504..303864,
                     303967..304119,304222..304248,304480..304668))
                     /locus_tag="CHLNCDRAFT_141121"
                     /note="similar to ubiquitin-protein ligase"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51360.1"
                     /db_xref="InterPro:IPR000225"
                     /db_xref="JGIDB:ChlNC64A_1_141121"
                     /translation="MASSTYISALLRRLRSGGEHQELQAARTLVDLSADSDDNRAAIV
                     AAGGIPALVQLLRSTASEQLLRSPASEQLLRSSTSEQVQLVSASALGCLSVDSPGNRA
                     AIGAAGAIPLLVQLLRAASEQLLRNTASEQVQLVAVELLGCLSCDGPDSSSAIAAAGG
                     IAALQQLHSSSPSVEEREEAAAALHNLSNSEQAGAVVLNAKGTAQEAHGSADPPAAEA
                     APAAEAAPVVAADAAVPASAPPHVASAGV"
     gene            complement(<305520..>311080)
                     /locus_tag="CHLNCDRAFT_141122"
     mRNA            complement(join(<305520..305777,305893..305958,
                     306085..306278,306388..306538,306683..306810,
                     306994..307066,307197..307354,307526..307613,
                     307847..307975,308126..308218,308434..308580,
                     308691..308846,308997..309056,309184..309333,
                     309485..309652,309834..310022,310169..310301,
                     310516..310661,310800..310865,311051..>311080))
                     /locus_tag="CHLNCDRAFT_141122"
                     /product="expressed protein"
     CDS             complement(join(305520..305777,305893..305958,
                     306085..306278,306388..306538,306683..306810,
                     306994..307066,307197..307354,307526..307613,
                     307847..307975,308126..308218,308434..308580,
                     308691..308846,308997..309056,309184..309333,
                     309485..309652,309834..310022,310169..310301,
                     310516..310661,310800..310865,311051..311080))
                     /locus_tag="CHLNCDRAFT_141122"
                     /codon_start=1
                     /product="expressed protein"
                     /protein_id="EFN51361.1"
                     /db_xref="JGIDB:ChlNC64A_1_141122"
                     /translation="MHSMQASAPLAAVQGKVAQPQLQALPLVRGVQVLEGLRERYAEQ
                     SACATQTSGAAAKADAMRGVADLLAREPGLTVPAECMHLVLGLPLEQVQAAAAAAKHQ
                     RSEAGSGRPARRQKTAEHPPLLQEALDLLGVVSSRRPDLLSHVGPQSGNEPLRLAAAL
                     AELAAYGRAVHGASAAGDVAARAATLLQGMVLAVPALFGHIASRMADASAGGGALLAL
                     LRSPDAEVSAAAVAMLAQLLQANADQAPQGIGRSALASLGVKARSPVQHLLEAVQALQ
                     ADEAPACARHLRLLQEHLHGGVPGKMEDLSLKSGEARQEVRVAVEARHATAHLPAIGT
                     VLLNTTAAEARQLLMLSDERAAGNGDSVQEVKSWRATLKADVQAARPVLAATLRKMAS
                     AALSCDRLPREVHAQLAEMGVNERGFTAEKDAPRLVQEVVARATVQMVRALQPKVEGL
                     HALMTDEDPDVAAIQLAAGMVRAQVTGSLLLSRFGLNIWATEFLPKLVFSIILQRRTV
                     HALPSAAKLEVHEGSEAMLQDLLDQASPTRGGDEVAAANLQTLKPPCMAALWALYEAR
                     VASKPEGQLGEQEQQALELFRRAEQAAGPASPAQLVAVRDAVLTVPESARAWDLVAAL
                     GLCSSNPDKTSWPPVLRFAAELQGQVQSARSVAALAQAVHRLVERLRRPQHDVDDAYV
                     LTRQATEVSALMSLLTLSLGIGSTMLPAAAQSEGSTLSAANDCLGAALDQQQRRDFDR
                     AAGDAAAEARTHIYIEVETAVKTASKRRREHQAAQAAAAAAAAAAAPPASGSGGGELD
                     LEGPRRAKTMPAAIDAARVVVDAALAPQPNQAALALVSSTGMSADATPFTPCAPRHSG
                     RQRA"
     assembly_gap    316924..316973
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            <317585..>318963
                     /locus_tag="CHLNCDRAFT_141124"
     mRNA            join(<317585..318596,318950..>318963)
                     /locus_tag="CHLNCDRAFT_141124"
                     /product="hypothetical protein"
     CDS             join(317585..318596,318950..318963)
                     /locus_tag="CHLNCDRAFT_141124"
                     /note="similar to At2g22130 [imported] - Arabidopsis
                     thaliana"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51335.1"
                     /db_xref="InterPro:IPR000225"
                     /db_xref="JGIDB:ChlNC64A_1_141124"
                     /translation="MASSTYISALLRRLRSGGEHQSVQAAGTLVDLCAGSDDNRAAIV
                     AADAIPALVQCISSSGVSDDLLEAAATLLRNLSVDSPGTAASIAAAGAISALVQRACS
                     SCSEAVQFQAAATLSCLSVDSPDCRVAIAAAGGIPVMVQLLRSSTASEEEKVVAAGAL
                     GCLSVDSPGTKAAIGAAGAIPLLVQLLRSTASEEVQVVATQALCFLSVDSPGNKAAIG
                     AAGAIPLLVQLLRSTASEELQIAAANALRFFSEDSPGNKAAIGAAGAIPALVQLLRST
                     TSEKVQLRATFALGCLSRDIPDSSAAIAAANGIAALQQPHSSSPSEAVREETAAALRS
                     LSHSAGV"
     assembly_gap    324660..325223
                     /estimated_length=564
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    329735..331924
                     /estimated_length=2190
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    334344..336792
                     /estimated_length=2449
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    338448..339945
                     /estimated_length=1498
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    346578..347801
                     /estimated_length=1224
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     assembly_gap    350420..353946
                     /estimated_length=3527
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            complement(<357049..>360929)
                     /locus_tag="CHLNCDRAFT_141129"
     mRNA            complement(join(<357049..357170,357327..357510,
                     357641..357880,358036..358125,358485..358835,
                     360357..>360929))
                     /locus_tag="CHLNCDRAFT_141129"
                     /product="hypothetical protein"
     CDS             complement(join(357049..357170,357327..357510,
                     357641..357880,358036..358125,358485..358835,
                     360357..360929))
                     /locus_tag="CHLNCDRAFT_141129"
                     /note="predicted protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51362.1"
                     /db_xref="InterPro:IPR000225"
                     /db_xref="JGIDB:ChlNC64A_1_141129"
                     /translation="MASATYIAALLTRLRSGDGRQAVQAARTLVDLCVDSDDNRAAIV
                     AAGGIPALAKLIRSSDASEDFLQAAARLLHNLSAHSPANAIAAVGGIPAVVQLLRSTD
                     SEELQIAAAQALGCLSVDNPGNKAAIGAAGAIPLLVQLLRSTASEEVQVNAAKALGYL
                     SVDSPDSSAAIAAAGGIAALQQLLYGTPSEADARQHSSPFRQLNLSRVGEDARAAPVA
                     PNQRPALRNFAQLRKAQREQHLSVPSRAADVPAAAAGEQTRRRQPARPQREDGPAGLL
                     PADPGPANTAAAGAPAAAAPLMWKDADEHPQVPAGGAADGLASGMADLRIARGMTKAE
                     RQQQPAQSSSRQAVTISRSWVQTGPEAPAGLGADATYQQLQQPRQAPQLLSQQRALAA
                     AAGEAAGGAAGIGAAVLAQGERQSAAYWNAMRGASWTEVGWQNILPVRLDGQKDPSTH
                     LVLAEVVRGGDEDSTDLRFSMKAQGAALVACLTCGRVRGERWQPVKPSRCRQAPSAAL
                     PAAEVEGRGGS"
     gene            <361870..>365883
                     /locus_tag="CHLNCDRAFT_141130"
     mRNA            join(<361870..361887,362065..362162,362442..362477,
                     362692..362740,363006..363060,363249..363307,
                     363525..363557,363741..363788,364050..364197,
                     364434..364569,364755..>365883)
                     /locus_tag="CHLNCDRAFT_141130"
                     /product="hypothetical protein"
     CDS             join(361870..361887,362065..362162,362442..362477,
                     362692..362740,363006..363060,363249..363307,
                     363525..363557,363741..363788,364050..364197,
                     364434..364569,364755..365883)
                     /locus_tag="CHLNCDRAFT_141130"
                     /note="similar to Band 7 protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51336.1"
                     /db_xref="JGIDB:ChlNC64A_1_141130"
                     /translation="MLLPAQPLAAVALVLTAVAIGAQLYSAGEWPPSPSALHELNHKG
                     NASTRFMDKTARFVSRVADIAGDYVILERALPISITLGMAPKLLRTHGSVWDVGVEGF
                     TMEFKFEPYGGHHMEQGWSGVELTRVEDSWVRDMRFINCDNGVLVAGSDRVTVRGFEV
                     AVSRNRGGGPENGEGHWGARVGTSTDVLVSDWVVLPRFMHSVGADTLAHYSVFENGRT
                     RDGVMELHRALAAQILFTDIHLGVGREGLYSGGPPISGPNTGAWTVFWNLRSNSGVHP
                     LPVHNKGLPGACTFGPDMSLIGMTFKAMKDKQGRPYKLCPDWFYQPGDISPPNLFRAQ
                     LQRRRWAAADARAALAEAGAAEAAASAALAATEAEAAAETAAVAAQEAAEEAAAPGLA
                     PGAAAASAEAPGPEPTAWRAAAAAAWDSDDSEEDEVAVGKEEEEEEFDAASTGDQPVA
                     AADAGVQAQLAAGALNTTAVAAAAAARPAPAASTPPAPAAVARAAAAAAGAQPAAAAS
                     AGSTATAKAAAKLGGAAHAAAGRQAGRGAAGRPGAGATAAAASDEAARSRAGASAQAA
                     AAAQAAKVASVATGEVALVEGEGAATKDAAAEDAEE"
     assembly_gap    362294..362343
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            <366641..>368927
                     /locus_tag="CHLNCDRAFT_28144"
     mRNA            join(<366641..366726,366874..366946,367143..367230,
                     367673..367822,367947..368041,368352..368459,
                     368592..368670,368845..>368927)
                     /locus_tag="CHLNCDRAFT_28144"
                     /product="hypothetical protein"
     CDS             join(366641..366726,366874..366946,367143..367230,
                     367673..367822,367947..368041,368352..368459,
                     368592..368670,368845..>368927)
                     /locus_tag="CHLNCDRAFT_28144"
                     /note="similar to slr0418;
                     GO_function: GO:16787 - hydrolase activity"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51337.1"
                     /db_xref="InterPro:IPR004843"
                     /db_xref="JGIDB:ChlNC64A_1_28144"
                     /translation="MPLPRGPPAGCKVTLAVVGDVHSQWDADDEAALDSLGADVAVFV
                     GDFGEEDVQMIRRIAALRHPKAVMLGNHDAWWGIGRGSCGSTPAIAAQLAALGGEHIG
                     YSSKRFPGLGLTLLGARPFSKGGKQWSDVADFYAEHYGVGGHRDSALRLLDRALAAEE
                     GDCKVVVAHNGPAGLGGRRHSICGVDWTEPEADFGDPDLQEGLDMMCCQGVHTPLVLF
                     GHMHSQLSGGGDRNMVEVDPRSGTVYLNAAAVPRIR"
     gene            complement(<370548..>371902)
                     /locus_tag="CHLNCDRAFT_141132"
     mRNA            complement(join(<370548..370661,370821..370915,
                     371060..371116,371313..371563,371733..>371902))
                     /locus_tag="CHLNCDRAFT_141132"
                     /product="hypothetical protein"
     CDS             complement(join(370548..370661,370821..370915,
                     371060..371116,371313..371563,371733..371902))
                     /locus_tag="CHLNCDRAFT_141132"
                     /note="similar to Nucleotide-sensitive chloride
                     conductance regulator family protein, expressed;
                     GO_process: GO:6821; regulation of cell volume - chloride
                     transport [PMID 6884]"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51363.1"
                     /db_xref="InterPro:IPR003521"
                     /db_xref="JGIDB:ChlNC64A_1_141132"
                     /translation="MLEQAESIGLQPVAERSADGGPLLEDEESVLHKFERLQLVIGAS
                     TDQGEGSLFITEWRIVWLSAADPTLGYSCEFPAVSMHAVATDEESSHRPCLYIQLDAG
                     DEEGGLGGGAGGGSSGEEEEEGEELLPELRLIPADASQLEAMFQAFCDGAERNPDFSE
                     EDEETGACFYDEDEVLAGAAAAAIGVGDVEELVGEDPARFEDADDDEEEEEEAQQPAA
                     GGAAVQPNGC"
     gene            <372176..>375672
                     /locus_tag="CHLNCDRAFT_141133"
     mRNA            join(<372176..372201,372354..372420,372721..372810,
                     373044..373131,373333..373403,373622..373696,
                     373927..374005,374177..374248,374478..374567,
                     374816..374884,375082..375222,375548..>375672)
                     /locus_tag="CHLNCDRAFT_141133"
                     /product="hypothetical protein"
     CDS             join(372176..372201,372354..372420,372721..372810,
                     373044..373131,373333..373403,373622..373696,
                     373927..374005,374177..374248,374478..374567,
                     374816..374884,375082..375222,375548..375672)
                     /locus_tag="CHLNCDRAFT_141133"
                     /note="similar to putative succinyl-CoA ligase alpha
                     subunit;
                     GO_function: GO:3824 - catalytic activity;
                     GO_process: GO:8152 - metabolism"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51338.1"
                     /db_xref="InterPro:IPR003781"
                     /db_xref="InterPro:IPR005811"
                     /db_xref="JGIDB:ChlNC64A_1_141133"
                     /translation="MRGVQRLAGLLRRSAAVEELLPSCSRALSTEAYNPAVFVDKDTK
                     VIVQGFTGKNGTFHSEQAIQYGTQVVGGVNPKKGGTTHLGLPVFASVREAKEATGCHA
                     TAIYVPPPGAAKAILEAVEAELDLVVCITEAIPQHDMVRVKKVLSEQSKTRLIGPNCP
                     GIIKPGECKIGIMPGYIHTPGKIGIVSRSGTLTYEAVFQTTNEGLGQSTVVGIGGDPF
                     NGTNFVDCLERFVLDPQTEGIIMIGEIGGSAEEEAAEFLIASGTTKPVVSFIAGLTAP
                     PGRRMGHAGAIISGGKGTAQDKIKALEAAGVTVTNSPAQMGVTMKRVMQERGLA"
     gene            complement(<376181..>376636)
                     /locus_tag="CHLNCDRAFT_141134"
     mRNA            complement(<376181..>376636)
                     /locus_tag="CHLNCDRAFT_141134"
                     /product="hypothetical protein"
     CDS             complement(376181..376636)
                     /locus_tag="CHLNCDRAFT_141134"
                     /note="similar to cyclic nucleotide gated channel beta 1"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51364.1"
                     /db_xref="JGIDB:ChlNC64A_1_141134"
                     /translation="MLAWMGGKQRLVAAGKQKTKQRREGGSTTKPAPAWSVPGPATAA
                     AAATHKKRQVVAEEEVRAAAAAGEPAAAGPSRRAAGAAAAGQPRLKRVKAVPHSLDLA
                     ALAMPAEWEAPQAAPDTAEDQAAEHPRQQQPLQSPVQHTPASSSTGSQA"
     gene            complement(<377635..>380666)
                     /locus_tag="CHLNCDRAFT_55198"
     mRNA            complement(join(<377635..377899,378069..378173,
                     378362..378447,378692..378829,379095..379225,
                     379390..379582,379727..379873,380076..380198,
                     380382..>380666))
                     /locus_tag="CHLNCDRAFT_55198"
                     /product="hypothetical protein"
     CDS             complement(join(377635..377899,378069..378173,
                     378362..378447,378692..378829,379095..379225,
                     379390..379582,379727..379873,380076..380198,
                     380382..380666))
                     /locus_tag="CHLNCDRAFT_55198"
                     /note="similar to tRNA delta(2)-isopentenylpyrophosphate
                     transferase (IPP transferase)
                     (Isopentenyl-diphosphate:tRNA isopentenyltransferase)
                     (IPTase) (IPPT); expressed;
                     GO_function: GO:4811; ATP binding - tRNA
                     isopentenyltransferase activity [PMID 5524];
                     GO_process: GO:8033 - tRNA processing"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51365.1"
                     /db_xref="InterPro:IPR002627"
                     /db_xref="JGIDB:ChlNC64A_1_55198"
                     /translation="MLGCARKGLVLVPHSRLNALRALAARQRRAMAGNTSAAATAASD
                     APCRPKVLILTGPTAVGKTKASLALAEALGGEIISADSVQVYRGLDIGSDKISAAERR
                     GIPHHLLDVLDPHQDFSAGDFFVRARAAADDILQRGKTPIVAGGTGFYLRWFILGKPS
                     TPPASPASEAAATQRLEQVLSWGGEAYAATEAAAGRPLSVGERWEAGAALVAALGDEE
                     SAARLRREPNNQYRLLRIVDILLQSGGRPLADQDLDAGTPTHYDCRCFFLHRPRLELY
                     RRIDGRVEEMVAAGLLQECQLLLEAGVAPSSNCASRAIGYRQALDFLRRCHDDPQAHA
                     TEAGVIQLVKAIQTASRQLCHRQMSWFRDEGMFRWVDATAGEEAVLAEVLERWHQPQH
                     EGGCGDGGRLTKEQAEEMKRYVPKLRLYFSGSDAMQRTLAELRQLLQRHKEWQAAQAQ
                     AQAQQQEERQQEGEAGAAGGEGQAAEAVSAVAANTAAPPP"
     gene            380891..>385046
                     /locus_tag="CHLNCDRAFT_33124"
     mRNA            join(380891..381272,381383..381527,381725..381893,
                     382080..382161,382352..382540,382764..382851,
                     383092..383196,383364..383474,383743..383844,
                     384092..384179,384969..>385046)
                     /locus_tag="CHLNCDRAFT_33124"
                     /product="hypothetical protein"
     CDS             join(381116..381272,381383..381527,381725..381893,
                     382080..382161,382352..382540,382764..382851,
                     383092..383196,383364..383474,383743..383844,
                     384092..384179,384969..>385046)
                     /locus_tag="CHLNCDRAFT_33124"
                     /note="similar to unknown protein; expressed"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51339.1"
                     /db_xref="InterPro:IPR008509"
                     /db_xref="JGIDB:ChlNC64A_1_33124"
                     /translation="MEPFYAALFGVAAVLAAVLEYGNRAGRNAPGNTTREFTMFRNNY
                     LLVYSLMMAGDWLQGPYVYALYQYYGFERGDIGKLFIAGFGSSMVFGTIVGSLADKHG
                     RKRAALTYCVTYTLGCFTKHFNNFWILAGGRVLCGIATSLLFSAFESWLVAEHFKRGY
                     VADWLGNTFSQAVFLGNGLMAILSGLVAHTLVETAAWGPVAPFDAAATVLAIGGLIIL
                     TSWSENYGDASEHSSAVDGFKKAGALIWNEPKIALLGAMQSLFEGSMYTFVFLWTPAL
                     SPKGERIPHGMIFACFMVSSMVGSAIAGKLLANNSKWKVEKYMQVVFGLSACMLFVPV
                     LYHQTSTKDVAPGTDAGGITGDGKVQLVAFCLFEVLVGIFWPSMMTMRSAYVPEEMRS
                     TIINFFRIPLNLFVCVVLYNVSSFPLATMFGMCSLFLLVCLACQRQ"
     gene            <386391..>390519
                     /locus_tag="CHLNCDRAFT_141139"
     mRNA            join(<386391..386495,386718..386992,387248..388374,
                     388585..388672,388845..388995,389180..389242,
                     389435..389889,390064..390133,390301..>390519)
                     /locus_tag="CHLNCDRAFT_141139"
                     /product="hypothetical protein"
     CDS             join(386391..386495,386718..386992,387248..388374,
                     388585..388672,388845..388995,389180..389242,
                     389435..389889,390064..390133,390301..390519)
                     /locus_tag="CHLNCDRAFT_141139"
                     /note="predicted protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51340.1"
                     /db_xref="InterPro:IPR001611"
                     /db_xref="JGIDB:ChlNC64A_1_141139"
                     /translation="MQPPVRAGHAATPSAAALSFQLSGVSSFPPAADTLALEPQPGHT
                     PPAWCDAPWLAAAPPAAPATPPPGPAPAPARPVAAIQAPSRAAQLPVELLACIVELVA
                     QDDKAQQRRQAGLGRPAARRRARSGHTAQFVSRAWLAAYRGVAYRRLTLHVATALRRL
                     QRRRGLSEGAAAAAVLQWLAARLPYAEEVVLAGVPQPLAAPPQQWPASGLQQQAGPHP
                     SGPTALLAWQLGELLLAALAGSSRLRRLSCDSLPHLPLLLAARAQLADAPGCQLAPLE
                     ELGVTAMPAAQVLCHLPLLQRLPLRVLGVSDAACLPEEESTALAAALGSLTQLSSLSL
                     GGSAASRQFESGGSGASSCAAMGQALAAPSTKAACGFGVRVRGASPPPLPPLAALPAS
                     PAAAPSIPGVSLPALALVAAAAGLPRLQQLELSLTFSKQQSEVQQAYLQHLGCVLRQQ
                     RSQREAAGCSCMPRDDAGVSAGEGACACACQASQGSRVSVTVHEHVQGDLSAVPVASC
                     SLNLDWDDESNPIEARCAAPRCAATLRRLLIAAQLPLQAGQFRPARLAALQVLEVAGC
                     CYIPAYFAEALCSMQQLRRLALRDCQLEAIAAVPWQEVLPRLPLLTEVCVERCSGAVL
                     LHTLWLGLAGCANVRSLRITGGPALGGGPPAAAATATPYQPLAAVAPGGGLMGWQHLV
                     VPGPPAAAAGHWACYCASQQQAQPAAPACGIPDCVALLQQLRSLDLSHNGLHALPDAL
                     AWCQQLSCVTLRGNRLLGIPRGVAALGALRKLDLSSNQVTTLDGGPYLPQLEELLLGG
                     NPQLLPSQLPLELLVARRLCRLGLPAWWRAAGAAAVDGALLAHMPWLLLEHS"
     gene            complement(<391459..>394024)
                     /locus_tag="CHLNCDRAFT_141140"
     mRNA            complement(join(<391459..391507,391617..391711,
                     391896..391939,392081..392124,392298..392413,
                     392585..392645,392869..392946,393165..393285,
                     393401..393561,393696..>394024))
                     /locus_tag="CHLNCDRAFT_141140"
                     /product="hypothetical protein"
     CDS             complement(join(391459..391507,391617..391711,
                     391896..391939,392081..392124,392298..392413,
                     392585..392645,392869..392946,393165..393285,
                     393401..393561,393696..394024))
                     /locus_tag="CHLNCDRAFT_141140"
                     /note="predicted protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51366.1"
                     /db_xref="JGIDB:ChlNC64A_1_141140"
                     /translation="MWEQQQAALPAKQPQSAAPAAALRAPGAAQRPPAKPAPARPAAA
                     AKAAAGRGAEPCLEEGEITEEGNSSSSCSDSDDGASRRRQRQRASRRRRSRSPLRRVA
                     GGAAAGKRRAATQACAAPSGPLEAQHALASLVESMSAEAASLHRQLGRLGASSGAIRP
                     APHGGARGGGEPAQPASSAVGVAGAADMERQLATLSSKLGQLQLPSASEAGVTLVCWD
                     TNVYMDHCRLIQECWERLLASGCADLRFLVPLAVVRELDGMKKCLFRGLWARRAIRRL
                     ADMQGHPALRGQREDELLRGQLRRNDDGILDCLLYFRARGAQVELCTRDVNLALRARI
                     EGIPCCEPQEARRRLIQRLEAASAEGKQAAK"
     gene            complement(<395648..>397111)
                     /locus_tag="CHLNCDRAFT_141141"
     mRNA            complement(join(<395648..395765,395952..396301,
                     396533..>397111))
                     /locus_tag="CHLNCDRAFT_141141"
                     /product="hypothetical protein"
     CDS             complement(join(395648..395765,395952..396301,
                     396533..397111))
                     /locus_tag="CHLNCDRAFT_141141"
                     /note="similar to unnamed protein product"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51367.1"
                     /db_xref="InterPro:IPR000225"
                     /db_xref="InterPro:IPR002893"
                     /db_xref="JGIDB:ChlNC64A_1_141141"
                     /translation="MASSTYVSALLRRLCSSGECQAVDAARTLGDLSAGSADSRTAIV
                     EAGAIPALVQRISRTAPGEDLLEAAARLLRNLSAGNSRNAAAIAAAGAIPPLLQCLFT
                     SRSEAVQVQAAMALSGLSFDSLDCSVAISAAGGIPAVLQHLRSSSCSEHVQLQAARVL
                     VILVRDPEIREAVAAAGGIPLLVQCLSSSTSEAILRTTASEQVQAAAAGALALLSRDS
                     PDNSAAIAASGGIVALQQLLYSSPKEEVREIAAAALHSLSNSEQAGAAVLDSEGAAQV
                     RTAPAGAAPTTAPTTAGDAPAVVDAEAAAPAARVCRGVRYCSEACSRAHWRTHKPECR
                     RLHAAAAAAAAAQP"
     gene            complement(<397906..>399184)
                     /locus_tag="CHLNCDRAFT_141142"
     mRNA            complement(join(<397906..397919,398236..398434,
                     398666..398821,398924..>399184))
                     /locus_tag="CHLNCDRAFT_141142"
                     /product="hypothetical protein"
     CDS             complement(join(397906..397919,398236..398434,
                     398666..398821,398924..399184))
                     /locus_tag="CHLNCDRAFT_141142"
                     /note="similar to DEHA0C15917g"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51368.1"
                     /db_xref="InterPro:IPR000225"
                     /db_xref="JGIDB:ChlNC64A_1_141142"
                     /translation="MASSTYISALVRCLRSGDNRAAIVAAGGIPALVQRISSSDAGDD
                     LLEAAARLLNNLSVGSPANAAAIAAAGGIPAVVQCLCSSRSERHLRSSSCSEHVQLQA
                     ARVLVILVRDPEIREAVAAAGGIPLLVQCLSSSTSEAILRTTASEQVQAAAAGALALL
                     SRDSPDNSAAIAASGGIVALQQLLYSPPSEAVRRATAASLVSLSNSAGV"
     gene            complement(<399397..>402425)
                     /locus_tag="CHLNCDRAFT_141143"
     mRNA            complement(join(<399397..399418,399627..399862,
                     400066..400189,400360..400457,400711..401157,
                     401705..401795,401984..402120,402414..>402425))
                     /locus_tag="CHLNCDRAFT_141143"
                     /product="hypothetical protein"
     CDS             complement(join(399397..399418,399627..399862,
                     400066..400189,400360..400457,400711..401157,
                     401705..401795,401984..402120,402414..402425))
                     /locus_tag="CHLNCDRAFT_141143"
                     /note="similar to Dimethyladenosine transferase
                     (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
                     dimethyltransferase) (16S rRNA dimethylase) (High level
                     kasugamycin resistance protein ksgA) (Kasugamycin
                     dimethyltransferase);
                     GO_function: GO:179; rRNA methyltransferase activity -
                     rRNA (adenine-N6,N6-)-dimethyltransferase activity [PMID
                     8649];
                     GO_process: GO:154 - rRNA modification"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51369.1"
                     /db_xref="InterPro:IPR001737"
                     /db_xref="JGIDB:ChlNC64A_1_141143"
                     /translation="MQGHPAAAEQRERDSRPAEAPAVPAVGWLWDKKAADTRKRLQEQ
                     NLRPKKSLGQNFMLDDDVLAAIVAAAGVQPGDLVLEVLELRLVCGDILRQNLPQLLHG
                     MQQHRTGWLAARQPAAYPAAAPAEAPQPRPEDGGGGSAQDVQQPAASQQQHLDGAPPL
                     HLHQHATPQQQATRQQQAAPQQQAAPQQQAQQDPRVLVVANLPYYITKDCLAQMLPLG
                     GRVAALYFMLQHEVGVRLTQEDPGASDWRAMNLVTQYYSQAQYLFEIDRRKYHPSPKV
                     NGAVVRFALTPPSQRLAVPSEPDFLKLIKKAFSQRRKVVRNALRPLYEPGQVAAALAA
                     AGLSEDARAQDLTLLQFGELAWRLQASGSELGPSAAGNEDGGGAEQPGPGVAQE"
     gene            complement(<406161..>411022)
                     /locus_tag="CHLNCDRAFT_28127"
     mRNA            complement(join(<406161..406346,406588..406642,
                     406888..406970,407251..407319,407524..407580,
                     407805..407858,407994..408068,408291..408359,
                     408697..408804,409441..409578,409943..410023,
                     410327..410380,410612..410700,410983..>411022))
                     /locus_tag="CHLNCDRAFT_28127"
                     /product="hypothetical protein"
     CDS             complement(join(406161..406346,406588..406642,
                     406888..406970,407251..407319,407524..407580,
                     407805..407858,407994..408068,408291..408359,
                     408697..408804,409441..409578,409943..410023,
                     410327..410380,410612..410700,410983..>411022))
                     /locus_tag="CHLNCDRAFT_28127"
                     /note="similar to ATP-dependent helicase;
                     GO_function: GO:3676; helicase activity - nucleic acid
                     binding [Evidence 5524] [PMID 4386]"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51370.1"
                     /db_xref="InterPro:IPR001650"
                     /db_xref="InterPro:IPR011545"
                     /db_xref="JGIDB:ChlNC64A_1_28127"
                     /translation="VKTVTQGDSFYTSAKTFEELGLSQELLQGLYTEMKFERPSRIQA
                     QTLPMILTPPFRSLIAQAHNGSGKTTCFTLGMLGRVDPKVQAPQALCVCPTRELVVQN
                     QMVLERMGKFTGGTGWFGRGRARRRGGGRPSTVIIGTHGKLRDWMQKRVLDVRSIAIL
                     VFDEADEMLKQDGFADDTVRMIKQLRAANPQIQILLFSATFNERVKRFAQKIVPDANQ
                     VFVPKEELSLDVIKQYRVLCPHGSDKVKVLKDMIFPLCEKLGQTIIFVRTRETARSLH
                     AVMEQEGHRCTSIEGGMDRQARDKVVKEFRDGTTKILISTDVLSRGFDVTLVINFDVP
                     VERDLRTPAFETYLHRIGRSGRFGRKGAAFNLVTGETVRRWLGVGGGGWGV"
     assembly_gap    408958..409096
                     /estimated_length=139
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
     gene            <412921..>416937
                     /locus_tag="CHLNCDRAFT_141146"
     mRNA            join(<412921..413111,413232..413692,413866..415162,
                     415324..415528,415992..416087,416308..>416937)
                     /locus_tag="CHLNCDRAFT_141146"
                     /product="hypothetical protein"
     CDS             join(412921..413111,413232..413692,413866..415162,
                     415324..415528,415992..416087,416308..416937)
                     /locus_tag="CHLNCDRAFT_141146"
                     /note="predicted protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51341.1"
                     /db_xref="InterPro:IPR002893"
                     /db_xref="JGIDB:ChlNC64A_1_141146"
                     /translation="MTLDEGPWADHHIQLDALLRELEASIEDDTPGDTGALAERARMF
                     AALPWRRRAQPGEPPEELRSRVRQAVQQLLVANGRILGRMQDRMQDRVGAPDRQSAAA
                     GHVSIASMLFTGCIDLAPADCARGVQLLLGSGTLVLMSTATLEREAGDALADDLLALV
                     EAQVTAMLHVLECSRMEPDNGASLESLATQHAPPGQLMDWVEAVVQAMQALLASGPAG
                     PVHMRILGPMAHVLRHMVKCPRFFSPHRDEWLRRLDLSHSLLMLLLPALSATAAAVQL
                     PEERRPQRACWELAASLAIVVSCGAIRHALLELLAASAQDSSSPAATSIARLTRAATA
                     LMQHVPLGDPTQAAVAGGPQAVPDHRFWIAFSMSKLLGLSAYLQWQLLDRQPATARPS
                     DAAQRHAHFLPLFPRLGRVLGMAIGAAKHSPGNASWSLVSDMFAFVDYLAQLLCILAE
                     PRSNPHGALKVECPLIRAPLSRSTLDALAAWCSCAADALQLLPLVAKAEAEAEASRLR
                     LGPVAAEVDAQLLDVPDQLAARLAGLPCLVVLACKVFSHLGEPDHPTAVAAVLAEDGQ
                     RGEVLLSSLRRLHASGCRYVHWRAADGDAPLPCYMAMLEVVAQPASVCCQLHDIVERC
                     SGTSTGDISGDSSGGTAAALAMAPSRWLQGLCAAHAQAVQVLLPRMHGTGLSQVQHLH
                     VACCLLDVVAWAPAALATSRELQLGLTYALEALAPQAAALVLGSGSGAARAATTDLLA
                     HAAKAEICASVNYVPDSILLTLHSFAAAARQAIAVVSAASSAGTAASTGDELMLELAA
                     AQRELEAVINPAPSRHSNALVALLEQAIAAADGSVQQQKQAAQSLQQHLQQVQLPAAQ
                     RLAVALLRWWRRPQQEEADRLELAQAAATRSCAYLACANLGAEGGAGAGEGVGSKRCS
                     GCRAVWYCGTACSHADWRAGGHRRVCKALEAARKAARQQLHAARA"
     gene            <417408..>421749
                     /locus_tag="CHLNCDRAFT_141147"
     mRNA            join(<417408..417741,417926..418018,418233..418531,
                     418923..419719,419894..420221,420466..420602,
                     420810..420935,421125..421185,421373..421457,
                     421631..>421749)
                     /locus_tag="CHLNCDRAFT_141147"
                     /product="hypothetical protein"
     CDS             join(417408..417741,417926..418018,418233..418531,
                     418923..419719,419894..420221,420466..420602,
                     420810..420935,421125..421185,421373..421457,
                     421631..421749)
                     /locus_tag="CHLNCDRAFT_141147"
                     /note="similar to ATP binding / catalytic/ protein kinase/
                     protein phosphatase type 2C/ protein serine/threonine
                     kinase/ protein-tyrosine kinase;
                     GO_function: GO:4672; ATP binding - protein kinase
                     activity [Evidence 3824] [PMID 5524];
                     GO_process: GO:6468 - protein amino acid phosphorylation"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51342.1"
                     /db_xref="InterPro:IPR000719"
                     /db_xref="InterPro:IPR001932"
                     /db_xref="JGIDB:ChlNC64A_1_141147"
                     /translation="MTVVAPPPLQPPPAAPSGPRTSVADAIAAMAAAVQRGDFAGAEA
                     AGAAAEVHLALPKQALRDLAPLSDGAQACVFSAQLAPECAHLVPGLDPAAPGGLAVAV
                     KRAHIRNSADLDRFRREAALLAQLRHPHIARLLGARLLPPGYQMVLQLEATSAASELH
                     SAGWRPAWPRLLRLAAQLAAALAHMHAAGCVHRDIKPANVLLNAARDAARLADLGLAA
                     AAAELAEGAVSHAKPTGGFHKQRMVGTLEYMAPEVLLGSPHSPASDVFALAVTVNELA
                     TGQLPYSDCTRDNPLAHTILEMGYGRQELAAAVAAEGLRPTLAPGTPAPLRLLLQGCW
                     ARQPGERPAAGEVASALEGMARAAEAAAAEVAAEVGAEAGEACRSSKVAAAAQAPPAP
                     SAAQEAGQPASQQQERQRDMPGGAAAEASRDADMPDAAGLADAASAAPAPGGPTAGGL
                     PAWLAAGGAAASAPVFTGSFLTAGKRDQMEDMVVVLPDAFGTAGAPGCTAVGVFDGHR
                     GASAAEFLTHNLQQLLSARLHAAAVGAGQLLAGALADADVAYRAQQDAVWAVRLARMG
                     AAAAGARPAPGSTATLVLVYPRRQPGQAQAQQALAVANLGDSRVVLCRDGQAVQLTRD
                     HTAELPNERRRVAAAGGACAVRAGGWRVGAAGLQVTRRASIGDADLKGEGVSAEAEVA
                     EVALTPRDAFFIAATDGLWDRVSNEDAVALVQDTVKHPGMCAQRLVLEALARGSTDNI
                     AAVVAFLNSDGSTVERVYDHGQLKYGGAAAAAARRKAAAATPPSADELQDTY"
     gene            complement(<422062..>425090)
                     /locus_tag="CHLNCDRAFT_28101"
     mRNA            complement(join(<422062..422216,422392..422460,
                     422623..422671,422913..422973,423326..423438,
                     423581..423679,423871..423957,424240..424281,
                     424524..424693,424976..>425090))
                     /locus_tag="CHLNCDRAFT_28101"
                     /product="hypothetical protein"
     CDS             complement(join(422062..422216,422392..422460,
                     422623..422671,422913..422973,423326..423438,
                     423581..423679,423871..423957,424240..424281,
                     424524..424693,424976..425090))
                     /locus_tag="CHLNCDRAFT_28101"
                     /note="similar to Os07g0523600"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51371.1"
                     /db_xref="JGIDB:ChlNC64A_1_28101"
                     /translation="MYRPHLPRRYAFNIAFNLLNKSTLNIFPAPWFLATFQLIASGAF
                     MCTLWALRLQPVPRVSWGDIRALAPVALFHTIGHVSACLSFSQMAVSFAHVVKSAEPV
                     LSVVLAQVILGEVYPYYVWLSLLPIIAGCSLAAMKEVSFAWSGFNNAMVSNVGMVLRN
                     IYSKKFLGQLNLDGINLFAILSIISIFYCLPCALVLEGGCPRPAACLHDLAAFIKLLA
                     AGGLFYHLYNQASYMVLDQGISPVTFSVGNTMKRVAVVVSSVLFFKNPVSILNWVGSM
                     VALLGTGLYSLAKQKASDEAKAQAKARSRSVSPTPWRDLPPRG"
     gene            complement(<428616..>432411)
                     /locus_tag="CHLNCDRAFT_141150"
     mRNA            complement(join(<428616..429242,429468..429635,
                     429816..430017,430173..430680,430801..431469,
                     431673..432127,432224..>432411))
                     /locus_tag="CHLNCDRAFT_141150"
                     /product="hypothetical protein"
     CDS             complement(join(428616..429242,429468..429635,
                     429816..430017,430173..430680,430801..431469,
                     431673..432127,432224..432411))
                     /locus_tag="CHLNCDRAFT_141150"
                     /note="predicted protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51372.1"
                     /db_xref="InterPro:IPR002893"
                     /db_xref="JGIDB:ChlNC64A_1_141150"
                     /translation="MADELQAGLEAQLIELAEAVLPEFEQPFPAAAPLDRGTVLIDKV
                     MKFTDLSEQLTATSAELRRSLRRTIQQLLELDRRVRRRASRREEGAPPVIRGDQITAA
                     SILFTGCIMLAPEDCAPGVQLLLGSGTLVLQDLAGMLEQGHAFTENALTSLVYTPRFQ
                     VAAMHTLLGLTRLAGGEALARVVAGCAPPVQLVAWMDQVVQSAALLEQAMGRPTGYLH
                     ARVVVPLAECLWFMHRSGPAFGAHFEELQQLQLQQPQQQEQQSMRRKLLLLLLPALAS
                     TAVALQLPEERRPAGSSWVQAASLAFVVAHPALRIARDMLAAEVQLGFATGTSIVRLL
                     RAAALLMQHVPLDELAAEDPQRLPQRDDFWVACAMARLLAAAAYLQHFVTDSTPGDVQ
                     QQRKQAALLLPLIPPLSRLLGATAAAVQAGALSRRQLSTMCSYVRDCLRLLPLVAEAV
                     RLQRHGAQVAADELDGDPALLAKYLCRLAHYVGSTCVGTMLRPEPEQEAALAAMAADG
                     GQEAGGSLAALHSAVGQLHAAGCRMAHWCAAGRAVLLPDMLGPLQRWHLAIFPAMTAL
                     QLQLRACGVVPHQADVSLGNYDIMAPLPDPTTQPPRVPPSRWLQALCATTWQAFQCGA
                     ADWPPTDRDQYHLLALLAEWAPAAVATSTELQGRLAKAVQTEMGVGRPFEGQDDMEAI
                     FYAGSELLQVAERSPVATALLLGGDDVTADVVTASMVGLALDASVLKAVDRIVGHILR
                     AAGGMVAAAQAEAAAAASCPGTAVGTSGELLTALGEGMAALEAVLYPSGGRTVALAAL
                     VQQAMAAADGALRQQAEAEEALRQHLLDNELLAARRLAAALLRWWRRPQQEEADRLEL
                     AQAAATRSCAYLACANLGAEGGAGAGEGVGSKRCSGCRAVWYCGTACSHADWRAGGHR
                     RVCKALAAARQAARQQRQERAGPP"
     gene            complement(<433161..>434792)
                     /locus_tag="CHLNCDRAFT_141151"
     mRNA            complement(join(<433161..433557,433692..433876,
                     434044..434154,434434..434515,434710..>434792))
                     /locus_tag="CHLNCDRAFT_141151"
                     /product="hypothetical protein"
     CDS             complement(join(433161..433557,433692..433876,
                     434044..434154,434434..434515,434710..434792))
                     /locus_tag="CHLNCDRAFT_141151"
                     /note="similar to hypothetical chloroplast RF66"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51373.1"
                     /db_xref="InterPro:IPR010004"
                     /db_xref="JGIDB:ChlNC64A_1_141151"
                     /translation="MVNVDISPSVVLGVGLIGAGVSLWQIRRVKPWISKDYDVVVSCI
                     SLLVGGILIFQGWRLDPLLLFGQLMTTGAAVSFAIEALRLRSEQYESEEKAALQDVFK
                     RRGPGGGGEGGAFQLPPPDPQAAAPWGEQGGEQGWAAQRQWEQEQQQQEGAGFFDYQQ
                     PGSAEGYDPQQQQQQYGSSADAQWYYGDNGQYQVADYPVPGSAGSDAGRGAFASSRGR
                     SDGGGPAEFVFPTSYGDDASGAPGDGSWGAPGEGQQPQWGPPGQQQQQQPPPAAPGRG
                     GSGYEMDDW"
     gene            <435471..>436313
                     /locus_tag="CHLNCDRAFT_55205"
     mRNA            join(<435471..435747,435882..436005,436226..>436313)
                     /locus_tag="CHLNCDRAFT_55205"
                     /product="hypothetical protein"
     CDS             join(435471..435747,435882..436005,436226..436313)
                     /locus_tag="CHLNCDRAFT_55205"
                     /note="predicted protein"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51343.1"
                     /db_xref="JGIDB:ChlNC64A_1_55205"
                     /translation="MALAEGGPVAQSSAQHHALPTLVSLRSLWTPTAQPAGLGATAAA
                     PALGSGCRRFNSGGVAAQQAAAQPAAEEQHEEEESLEQIRARIFGTHIGNGLRSGRKV
                     LRRPLLGQKLVDYYPPDPIKADPLMLNLKAENAKLKLDRLRRRGKAPPKKGAGKRAGK
                     KR"
     gene            complement(<436888..>438887)
                     /locus_tag="CHLNCDRAFT_55206"
     mRNA            complement(join(<436888..436972,437128..437200,
                     437309..437479,437676..437750,437935..438092,
                     438265..>438887))
                     /locus_tag="CHLNCDRAFT_55206"
                     /product="hypothetical protein"
     CDS             complement(join(436888..436972,437128..437200,
                     437309..437479,437676..437750,437935..438092,
                     438265..438887))
                     /locus_tag="CHLNCDRAFT_55206"
                     /note="similar to ATP binding / kinase/ transferase,
                     transferring phosphorus-containing groups;
                     GO_function: GO:5524; kinase activity - ATP binding
                     [Evidence 16772] [PMID 16301];
                     GO_process: GO:103 - sulfate assimilation"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51374.1"
                     /db_xref="InterPro:IPR002891"
                     /db_xref="JGIDB:ChlNC64A_1_55206"
                     /translation="MPCHAPFVGTAQPQACCDRPRQRPARGAAAARRPQRLPVAAAAP
                     GGENGNGAPATTAALHANGSGPPLETTTVGKSTNIRWQESMVSRDDKERLLGQRGCVL
                     WFTGGCPVAAACVTASVLLLRSQFMRPVAPASLSVGGGKASQAGATAGYLTAYAEPPH
                     HCIPGLSGSGKSTVSCTLEHMLHELGHFTSLLDGDNVRHGLNKDLGFSAEDRTENIRR
                     IGEVAILFKETGTPDAAHLEPATCRRQLLLSGSHYLPPSTCCRAVTMTSFISPYRADR
                     DMVRQRCRPGEFLEVFMNIPLEVCEQRDPKGLYKKARAGLIKNFTGIDDPYEAPLEPE
                     IVVDCFDADGQQRTPRDMAEQILKTLQEQGYLRDPTMPTLAVANALLRKHSDGILDFA
                     QL"
     gene            complement(<439917..>441914)
                     /locus_tag="CHLNCDRAFT_141154"
     mRNA            complement(join(<439917..440001,440166..440238,
                     440384..440629,440772..440836,440979..441108,
                     441454..441667,441903..>441914))
                     /locus_tag="CHLNCDRAFT_141154"
                     /product="hypothetical protein"
     CDS             complement(join(439917..440001,440166..440238,
                     440384..440629,440772..440836,440979..441108,
                     441454..441667,441903..441914))
                     /locus_tag="CHLNCDRAFT_141154"
                     /note="similar to ATP binding / kinase/ transferase,
                     transferring phosphorus-containing groups;
                     GO_function: GO:5524; kinase activity - ATP binding
                     [Evidence 16772] [PMID 16301];
                     GO_process: GO:103 - sulfate assimilation"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51375.1"
                     /db_xref="InterPro:IPR002891"
                     /db_xref="JGIDB:ChlNC64A_1_141154"
                     /translation="MCQQAAPRDVSAQAAAAPAAVAPPHAVGTNNAVAGPHLSTTDVG
                     NSTNIRWHDSMVARTDKEMLLGQRGCVLWFTGLSGSGKSTVACTLEHLLHERGHFTSL
                     LDGDNIRHGLNKDLGFSAEDRAENIRRIGEVARLFADAGAITMTSFISPYRADREMVR
                     ERCNAGEFLEVFMNIPLEVCEQRDPKGLYKKARAGLIKNFTGIDDPYEAPLEPEIVVD
                     CFDADGQQRSPRDMAEQILEVLDGMGYLRDPRMPTLTAYGALQRKHSDGILDFAQL"
     gene            complement(<443699..>448259)
                     /locus_tag="CHLNCDRAFT_7260"
     mRNA            complement(join(<443699..443771,443954..444045,
                     444231..444291,444548..444628,444802..444852,
                     444996..445097,445256..445320,445448..445538,
                     445677..445726,445892..445949,446143..446233,
                     446368..446515,446902..447000,447182..447254,
                     447418..447521,447629..447680,447834..447890,
                     448041..448144,448239..>448259))
                     /locus_tag="CHLNCDRAFT_7260"
                     /product="hypothetical protein"
     CDS             complement(join(<443699..443771,443954..444045,
                     444231..444291,444548..444628,444802..444852,
                     444996..445097,445256..445320,445448..445538,
                     445677..445726,445892..445949,446143..446233,
                     446368..446515,446902..447000,447182..447254,
                     447418..447521,447629..447680,447834..447890,
                     448041..448144,448239..>448259))
                     /locus_tag="CHLNCDRAFT_7260"
                     /note="similar to 6-4 photolyase;
                     GO_function: GO:3913 - DNA photolyase activity;
                     GO_process: GO:6281 - DNA repair"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51376.1"
                     /db_xref="InterPro:IPR005101"
                     /db_xref="InterPro:IPR006050"
                     /db_xref="JGIDB:ChlNC64A_1_7260"
                     /translation="SIIWFRKGLRLHDNPALLAAAAGADHLCPIFILDPWFLKSDKIG
                     VNRIQFLLESLTDLDASFRARGSRLLVLRGRSEEAPSCQAAASLPGALQEWGVTRLCF
                     EHDTEPYAKRRDVAVRQLAEAAGVEVVAPVSHTLYDPQVLLQRNGGRAPLTMQSFTKL
                     VDGGGCAAGYRCIAAPSWPQAAALVSSSVAVPSLTDIGYPPTGTTPFKGGESAALARM
                     ADYLSDKGWVCAFEKPKGNPAAFVRPSTTVLSPYLKFGCLSPRLFHAKLQQIYAERNG
                     MHTQPPVSLRGQLLWREFFTLCGAAIPNFDRMAGNPICKQIPWVDDPERIAAWEHSRT
                     GYPWIDAIMAQLRQQGWMHHLARHSVACFLTRGDLWCSWEAGQAVFDKYLIDADWSLN
                     AANWQWLSASAFFSQYFRVYSPIAFGKQYDKNGDYIRRFLPVLKDMPVRYIYEPWTAP
                     LSVQQAAGCVVGKDYPRPIVDHQAAMKENMARMKAAYGASK"
     gene            448625..453117
                     /locus_tag="CHLNCDRAFT_59267"
     mRNA            join(448625..448905,449047..449101,449304..449379,
                     449610..449680,449805..449859,450076..450180,
                     450384..450476,450619..450681,450844..450909,
                     451046..451176,451388..451607,451849..451967,
                     452143..452196,452372..452453,452671..452773,
                     452932..453117)
                     /locus_tag="CHLNCDRAFT_59267"
                     /product="hypothetical protein"
     CDS             join(448634..448905,449047..449101,449304..449379,
                     449610..449680,449805..449859,450076..450180,
                     450384..450476,450619..450681,450844..450909,
                     451046..451176,451388..451607,451849..451967,
                     452143..452196,452372..452453,452671..452773,
                     452932..453031)
                     /locus_tag="CHLNCDRAFT_59267"
                     /note="similar to putative aminoacyl-histidine
                     dipeptidase; expressed;
                     GO_function: GO:8237 - metallopeptidase activity;
                     GO_process: GO:6508 - proteolysis and peptidolysis"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="EFN51344.1"
                     /db_xref="InterPro:IPR002933"
                     /db_xref="JGIDB:ChlNC64A_1_59267"
                     /translation="MLSRTATFFSLSRVIAHRTQARPFAPPASLPYRRTPPPTRSAFA
                     CLHRDMPSAVAANGGLPAALQGLQPEGLWRHFGELSKIPRPSKHEERVLEWLKRFATD
                     RGLDWKQDKVGNIVIYRPGSGGGEKAPPVIIQGHVDMVCEKNADVSHDFMSDPIRLVR
                     DGDWITADGTTLGSDNGIGVCAALALLDLPQSELLPPLECLFTIDEETGLTGAFQLDG
                     TMLHGRTLLNLDTEDWGDVFIGCAGSGDSILLLKPELEPVPAGFVGVEVEVKGLLGGH
                     SGININEDRGNAVAMAAAVAEASLAHVPAARLVTMQGGDKRNAIPRECSALLVVPADQ
                     LHMLKGAIGHRFAAFEQEFGKKEPGLSITATPAATIPATCLTAAGGQQLLDLLLTLPH
                     GVIKNSHAVPGLVETSSNLASIEPQEVASGKAAFAVQCSTRSSLMPALEQVRSSITRI
                     GRLCGAEVEQDVAYPGWAPNPSSAIVKMTAEAIGRVTGKAPEVKAIHAGLECGIIGEK
                     LPGLECVSYGPTITGAHSPDERVLIPTVPPFWQATVEILRQLARRT"
     assembly_gap    453561..453614
                     /estimated_length=54
                     /gap_type="within scaffold"
                     /linkage_evidence="unspecified"
CONTIG      join(ADIC01002881.1:1..1334,gap(20054),ADIC01002882.1:1..3172,
            gap(219),ADIC01002883.1:1..4707,gap(50),ADIC01002884.1:1..6495,
            gap(50),ADIC01002885.1:1..23716,gap(1947),ADIC01002886.1:1..10491,
            gap(50),ADIC01002887.1:1..1129,gap(3611),ADIC01002888.1:1..890,
            gap(7769),ADIC01002889.1:1..1069,gap(410),ADIC01002890.1:1..1313,
            gap(4021),ADIC01002891.1:1..13768,gap(21613),
            ADIC01002892.1:1..1835,gap(384),ADIC01002893.1:1..1704,gap(272),
            ADIC01002894.1:1..2946,gap(50),ADIC01002895.1:1..8827,gap(50),
            ADIC01002896.1:1..14607,gap(277),ADIC01002897.1:1..1021,gap(407),
            ADIC01002898.1:1..3748,gap(50),ADIC01002899.1:1..6754,gap(241),
            ADIC01002900.1:1..5625,gap(1292),ADIC01002901.1:1..879,gap(832),
            ADIC01002902.1:1..32598,gap(1686),ADIC01002903.1:1..8098,gap(50),
            ADIC01002904.1:1..8180,gap(50),ADIC01002905.1:1..1032,gap(50),
            ADIC01002906.1:1..7351,gap(2232),ADIC01002907.1:1..1104,gap(641),
            ADIC01002908.1:1..1203,gap(12313),ADIC01002909.1:1..2201,gap(143),
            ADIC01002910.1:1..4487,gap(354),ADIC01002911.1:1..33900,gap(1006),
            ADIC01002912.1:1..18565,gap(50),ADIC01002913.1:1..7686,gap(564),
            ADIC01002914.1:1..4511,gap(2190),ADIC01002915.1:1..2419,gap(2449),
            ADIC01002916.1:1..1655,gap(1498),ADIC01002917.1:1..6632,gap(1224),
            ADIC01002918.1:1..2618,gap(3527),ADIC01002919.1:1..8347,gap(50),
            ADIC01002920.1:1..46614,gap(139),ADIC01002921.1:1..44464,gap(54),
            ADIC01002922.1:1..984)
//