LOCUS GL379967 315888 bp DNA linear CON 13-MAR-2015 DEFINITION Caenorhabditis brenneri unplaced genomic scaffold Scfld02_181, whole genome shotgun sequence. ACCESSION GL379967 ABEG02000000 VERSION GL379967.1 DBLINK BioProject: PRJNA20035 BioSample: SAMN02953693 KEYWORDS WGS. SOURCE Caenorhabditis brenneri ORGANISM Caenorhabditis brenneri Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 315888) AUTHORS Wilson,R.K. CONSRTM The Caenorhabditis brenneri Sequencing and Analysis Consortium TITLE Direct Submission JOURNAL Submitted (21-JUL-2010) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park Parkway, St. Louis, MO 63108, USA REFERENCE 2 (bases 1 to 315888) CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (28-JUL-2011) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park Parkway, St. Louis, MO 63108, USA REMARK Annotation update by submitter COMMENT The organism is Caenorhabditis brenneri Sudhaus & Kiontke, 2007; strain PB2801. This strain is derived from the wild isolate LKC28. It was inbred in Scott Baird's laboratory for 20 generations by transferring one gravid female per generation. The strain LKC28 was established from worms collected by Hernan Ruiz in 2003 from roots of Liriope (Convallariaceae) grown in a nursery in Costa Rica (Provinciade Alajuela) (Sudhaus & Kiontke 2007). LKC28 and three other strains of C. brenneri were described in Sudhaus & Kiontke, 2007. Annotation was added to the scaffolds in July 2011. ##Genome-Assembly-Data-START## Assembly Method :: PCAP v. 9/3/04 Assembly Name :: C_brenneri-6.0.1 Genome Coverage :: 9.5x Sequencing Technology :: ABI ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..315888 /organism="Caenorhabditis brenneri" /mol_type="genomic DNA" /submitter_seqid="Scfld02_181" /strain="PB2801" /db_xref="taxon:135651" /chromosome="Unknown" gene complement(<3318..>12449) /locus_tag="CAEBREN_08254" /db_xref="WormBase:WBGene00146979" mRNA complement(join(<3318..3454,8025..8352,8399..8637, 10243..10389,10734..10973,11024..11123,12125..12216, 12267..12320,12386..>12449)) /locus_tag="CAEBREN_08254" /product="hypothetical protein" /db_xref="WormBase:CBN08254" /db_xref="WormBase:WBGene00146979" CDS complement(join(3318..3454,8025..8352,8399..8637, 10243..10389,10734..10973,11024..11123,12125..12216, 12267..12320,12386..12449)) /locus_tag="CAEBREN_08254" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39301.1" /db_xref="WormBase:CBN08254" /db_xref="WormBase:WBGene00146979" /translation="MRCNFRTAFRISLLLAVVLINVIDASIIHKSRLVKAVRRESVPE KTRLADGTLFEKYVEKGELPPLPIEDEEEADDLNDPRIGHLDKDGGIAVPVDSDGRVL KGFEYLLKPITIDLDLEEDDDSKRKPSEDSYQIPSVSQDLGGQKDYKPYPNNQDMRPK QEFLPGDQEVNGDEYDDVSSEPKEALPNVPDLPKPDYTDSGESDEDLKGGDVDEQEPK VDRVNPVPPNVIINEVIIPSSNIELPISRDDVDEKSKSADEIEEETSIERDGDDGDKS VDIPKNRLVGDSDIDETKGLEGMEEDGDAEESGRDENDIDLSDAEVENLAKDIRDSVF NLYKTAEFDESDSKFESGAENTQDSEDENTDPNSINAQAEMPSEPETPREQVSEAEYL DGVVLPDQSLTDDEIAKIAAESLKPVEPIAPAVVPPPRPPVRGGRIGSGVQPDSATQQ NIFIQFFIVAMAMLLL" assembly_gap 15145..15154 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<16412..>18232) /locus_tag="CAEBREN_26102" /db_xref="WormBase:WBGene00164827" mRNA complement(join(<16412..16518,16567..16873,17010..17151, 17201..17505,18062..>18232)) /locus_tag="CAEBREN_26102" /product="hypothetical protein" /db_xref="WormBase:CBN26102" /db_xref="WormBase:WBGene00164827" CDS complement(join(16412..16518,16567..16873,17010..17151, 17201..17505,18062..18232)) /locus_tag="CAEBREN_26102" /note="contains similarity to Pfam domain PF10319; contains similarity to Interpro domain IPR019423 (7TM GPCR, serpentine receptor class j (Srj), Nematode)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39294.1" /db_xref="InterPro:IPR019423" /db_xref="PFAM:PF10319" /db_xref="WormBase:CBN26102" /db_xref="WormBase:WBGene00164827" /translation="MSTYQLVCTIISFILNSFLVWLILRHSPKQTGKYKWLMLYTTCF EMFWGAFDLPAEIIAHSVGCAFIVFRVNHPDSLLSSDQSSWVVLVYTAIFGASMALFA SHFIYRYGSIDNEFGNKFTSGSKFGVLFFIPVVTGVWWSTVVRVWFWPNLDMDDYTRN LIREQVGVGIENISYIGAKFYNKNVNGTESFNIPAWIGVCQMWFMVIASMTCVFGFGA FCYFRLSSQLSLVSNSANNLQVQLFYALVLQTAIPLILMHFPIAIYFLCPMLDLDFDF ASAFVASTITLYPAVDPLPSILIIKNYRRATIYSFRRLICLPGGKYAARSTATVHSNN GRSFSKTVN" gene complement(<22721..>25228) /locus_tag="CAEBREN_23893" /db_xref="WormBase:WBGene00162618" mRNA complement(join(<22721..23137,23895..24572,24977..>25228)) /locus_tag="CAEBREN_23893" /product="hypothetical protein" /db_xref="WormBase:CBN23893" /db_xref="WormBase:WBGene00162618" CDS complement(join(22721..23137,23895..24572,24977..25228)) /locus_tag="CAEBREN_23893" /note="contains similarity to Pfam domain PF00724; contains similarity to Interpro domains IPR013785 (Aldolase-type TIM barrel), IPR001155 (NADH:flavin oxidoreductase/NADH oxidase, N-terminal)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39292.1" /db_xref="InterPro:IPR001155" /db_xref="InterPro:IPR013785" /db_xref="PFAM:PF00724" /db_xref="WormBase:CBN23893" /db_xref="WormBase:WBGene00162618" /translation="MSLRRFPNAEIVPTEILGEELKFPNGRTAQNRFLKAAMTERLST YSPENPKKHGLPTEHILNIYDKWGHGQFGMTLTANVLVDPTNLEAIGNVIIFQEGDSP ERRSLYTQWAQKMKQDGSLAIVQLSHAGRQTPIYVNPHPWSASDVQLKTPDNQYGKPI GLTLEQVKTEVIDRFVYAAKFSYECGFDGVELHGAHGYLLSQFTSLTTNKRIDRYGGS LENRNRLILEIYDEIRREISSKDFLIGLKTNSVEFQSEGTTLEDAKELCRAYEKRGFD FVELSGGTAEKFLFNHERESTKKREAFFAEFAEQIRPVFKNTVVYLTGGFRTVGAMVD AIKRDTTQGIGLGRPVTAEPDLPKKILDGSVPSAVKDEFNQNEMGKTIMASCSQIEQM GRKSVEGAGGDVMDQISDFTDGNLVAKYDEAVVEFMREMKEAVTAGRTPKSIIVFN" gene complement(<26838..>28965) /locus_tag="CAEBREN_15794" /db_xref="WormBase:WBGene00154519" mRNA complement(join(<26838..26976,27026..27303,28191..28508, 28933..>28965)) /locus_tag="CAEBREN_15794" /product="hypothetical protein" /db_xref="WormBase:CBN15794" /db_xref="WormBase:WBGene00154519" CDS complement(join(26838..26976,27026..27303,28191..28508, 28933..28965)) /locus_tag="CAEBREN_15794" /note="contains similarity to Interpro domain IPR013785 (Aldolase-type TIM barrel)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39308.1" /db_xref="InterPro:IPR013785" /db_xref="WormBase:CBN15794" /db_xref="WormBase:WBGene00154519" /translation="MILTGNVAVDPTNLEAISNAIIFKEGDSSERRALFTQWAQKMKQ DGALAIIQLSHGGRQSSVWANRTPFGVSDIELKTDPPGIMCVKPVALTTEQVKSEVVD RFVYAAKFAYECGKNIRPVFKNTVVYLTGGFRTVGAMVDAVLRNTTQGIGLGRPATAE PDLPKKILNGSVLSAVQDAFNPNDLIKQMLASGSQLEQMGRNSVRKAGGNVMDQISDY SDERVVEVFNGKTMEMYGKMQKDALSGKAPKMLVVMN" gene complement(<31723..>34322) /locus_tag="CAEBREN_08623" /db_xref="WormBase:WBGene00147348" mRNA complement(join(<31723..31840,31891..32168,32766..33452, 34071..>34322)) /locus_tag="CAEBREN_08623" /product="hypothetical protein" /db_xref="WormBase:CBN08623" /db_xref="WormBase:WBGene00147348" CDS complement(join(31723..31840,31891..32168,32766..33452, 34071..34322)) /locus_tag="CAEBREN_08623" /note="contains similarity to Pfam domain PF00724; contains similarity to Interpro domains IPR013785 (Aldolase-type TIM barrel), IPR001155 (NADH:flavin oxidoreductase/NADH oxidase, N-terminal)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39284.1" /db_xref="InterPro:IPR001155" /db_xref="InterPro:IPR013785" /db_xref="PFAM:PF00724" /db_xref="WormBase:CBN08623" /db_xref="WormBase:WBGene00147348" /translation="MALKRFPNALNVSSKILGEQLKFPNGRVAPNRFMKASMSERLST YSPEDPKKHGLPTEKILNVYDKWGNGQFGMIITGNVLVDPTNLEDAGNAIIFKEGDSS ERRSLYTQWAQKMKQDGALAIMQISHAGRQTSVKVNPTPWGASDIELKTDPPGSRYGK PIALTTEQVQTEVIDRFVYAAKYAYECGFDGIQLHGAFGYLLTQFTSPTTNKRSDKYG GSLENRNRLIMEIYDEIKKEIPESSGFLVGIKTNSKEWQDEGTSVEDAKVFCEAYEKK KFDFVELTGGTAEKFKFEHERESTKVREAFFVEFADAIRPVFNNTVVYLTGGFRTVGA MVDAVQKNTTQGIGLGRPSTAEPDLPKKILNGSVLSAVKDAFNPNNIIHQIMGSGTQI EEMSRNSLEKAGGNVMDQISDFSDEKVVAAFGERLAMMFGGKQAPKAVEVKA" assembly_gap 38147..38731 /estimated_length=585 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 39177..46803 /estimated_length=7627 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <48177..>50097 /gene="Cbn-col-121" /locus_tag="CAEBREN_09321" /db_xref="WormBase:WBGene00148046" mRNA join(<48177..48326,48684..48804,48851..49344, 49786..>50097) /gene="Cbn-col-121" /locus_tag="CAEBREN_09321" /product="CBN-COL-121 protein" /db_xref="WormBase:WBGene00148046" CDS join(48177..48326,48684..48804,48851..49344,49786..50097) /gene="Cbn-col-121" /locus_tag="CAEBREN_09321" /note="contains similarity to Pfam domain PF01484; contains similarity to Interpro domain IPR002486 (Nematode cuticle collagen, N-terminal)" /codon_start=1 /product="CBN-COL-121 protein" /protein_id="EGT39305.1" /db_xref="InterPro:IPR002486" /db_xref="PFAM:PF01484" /db_xref="WormBase:CBN09321" /db_xref="WormBase:WBGene00148046" /translation="MRVDVARLAARLICLVSVLTVAFTLITFVHILSKIQKTENEILG KQTGFKAKSQVIWAELMETGRSLRIPRNAYGVGASEEKKGILHQCSQCTRLHCPQGPI GEEGAPGNDGQPGTPGKPGSPGLEGIDVDLEPQDELPCSICPSGPQGPRGAQGERGLP GNQGRKGKSGKSGHPGQPGGIGASGAKGQTGTRGNPGLKGPPGDTIIAGEGIKGPPGL PGSQGPKGPPGNPGRTSNIRGPPGKPGIQGGIGGTGKFGKFGEQGGIGAPGEPGLPAA YCPSDCGVNTILSQFGSRAQHPESINGEDNGAPASNPEEYAPEETVEAPAPPAPQPTV QQQQETAAAEESFEESSYRSFFGH" assembly_gap 53763..54924 /estimated_length=1162 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 55760..55991 /estimated_length=232 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<58427..>65866) /locus_tag="CAEBREN_03315" /db_xref="WormBase:WBGene00142040" mRNA complement(join(<58427..58547,58679..59434,59492..59803, 59957..60488,60539..60697,61102..61254,61312..61528, 61625..62812,62912..63603,63864..64233,64278..64404, 64591..64887,65241..65456,65563..65654,65792..>65866)) /locus_tag="CAEBREN_03315" /product="hypothetical protein" /db_xref="WormBase:CBN03315" /db_xref="WormBase:WBGene00142040" CDS complement(join(58427..58547,58679..59434,59492..59803, 59957..60488,60539..60697,61102..61254,61312..61528, 61625..62812,62912..63603,63864..64233,64278..64404, 64591..64887,65241..65456,65563..65654,65792..65866)) /locus_tag="CAEBREN_03315" /note="contains similarity to Interpro domains IPR004083 (Regulatory associated protein of TOR), IPR015943 (WD40/YVTN repeat-like-containing domain)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39310.1" /db_xref="InterPro:IPR004083" /db_xref="InterPro:IPR015943" /db_xref="WormBase:CBN03315" /db_xref="WormBase:WBGene00142040" /translation="MSEERILAPFSSFDERLSVNMWQAQRNVEKVTLYLQERRHLEEI RGTKDLDTLEDCRRKGSDRLRTASVAIVMCLHLGVDPPEAPSRKDAPARLLSWVDPYK CGAHKAALEVAMSTQRAYEKWQPKSKTRYKICCDPPIDDVRKVATNLRRISGNDRVLF HYNGHGVPKPTDNGEIWVFNKSFTQYIPLSIFDLQGWLDYPTIYIWETHSAETILHNY RRFGEDQKISWQSRFDRWQEEQRNLPPISSKMTDADAAEALGFPEKYPRYNDCIHLAA CSAGQFLPMSNPHLPADLFTSCLTTPIRTSLAFHLSHSEHRNEYPENILDMIPGNLAE RRTVLGELNWIFTAITDTIAFTSIDSGSFQKLFRQDLLLATLFRSFLLAQRVMSKFDV LPISQPQLQDTSKHDLWKCWDQTMDMVLDYCRELMYVKECERALFCGRDVINRSSVFP FLVLIDFEHVLTYNETHQYNSFFTEQLQAFELWLDYGVNGDSAPLQLPMVLQVLLSQA HRVRALRLLARFLDFGRWAIGYALAVGIFPYVLKLLQSNISDLKISLAFIWAKILAVD PSCQMELFNECIDESAAQNQSPQQAQQTTPPPQQPSVALKQSSMFANHPPPPPLVMDK RALQINTQTGGRFQNNQNQALEMQLQYAQQQNHQRQIDPSGGQHSPNPQPKQQQQQQQ QQPQQPQGIMKQTSQQPAEKKTMLRFQYFLQLLGDPDIKPKQKTVAAFVLAQLTSNNF RLAQKELTSKGYMGMCTELMVDDAARSVKLLKLWILIGLGRLWSDYDVARWQGIRLMA HDKMILELSDDSAEVRAAAVFALGSLLRNSSRSNEHASAVEENLADELCAQCVFDSSV LVREELIVALQWFVFDFEKRFVKFVLDLTNHIKLPIPRSRSPSDNGVIEEAEEAEDAG DRLSATHRKPRYLINEYTQPSVIRKKMSTSVFSTAVEETIEEDASGNRYLVSYDSGNT VQRPVEEEVYRKRAMAQIRHLEAKTFNEAVARTWLSLLRLSLDPVERVALMAQSIVHR VEEGIPEMKANIDNTMAHLNRKMIARKTSKATVEMPRRPVGPNEEVSNLAERIKRNLE VEKETGVASQGIDFTQMNVQKQKERKGKGQIKKLQDESKVKFQVGSPGDLGQHPRNAL SPGSSITSETQSSELFSKDEESEEEEERSATEERDVATTASGRTVKNIFRKSDFMDAA TMEFTPRRTKAVPGDFTVKEESKTLRNVIENPIVSTDFVGWCSKVFVEPILHVITLDE EKQEEWEHEDEDEFMPDEYQEKIREIQKQKKKMKEEKRAKDKKEGKKERSQEDVTVTT TTISDWAIHAQEGMLQSAEIEGRDFKNSRYDECLWKVNLTHPARSIITSKLRRCMYAT DGKLMSIIRQDLDTSYFRRFDLMDNNQFCPSDITQLILINDMARELIIACGSNGIIRI WDPCFDLWSDEFTKPPELVSASFPLESQMRLSDETNKCLFDWNQQNGKLMVTGSRSVR IWDAHCEKVCQDVMYSSGSKPQGGPGARLVSKALPTAMSGNLDEEGNMIAVGYADGRV DYFDMRMANPKAARCLLTPANFSSKFDATLPGIMHLRVNRQGFGTELFAGSTDGSIYK LQLRMFKEAAPSIVTPWEPGEHSHMFVHEDSRILATSANGNLAIYDVAQNKQMAYIES NKEPDIIRRQKSANTFGLFSSQRKLSAAQLSGKSTPIGERSESGSTGGVPTILSLTMH QMRLLTVAGYSDNTVCVYGSPSPGLTSSYEKTKIANRDFHSH" gene complement(<67355..>67716) /locus_tag="CAEBREN_20568" /db_xref="WormBase:WBGene00159293" mRNA complement(join(<67355..67436,67553..>67716)) /locus_tag="CAEBREN_20568" /product="hypothetical protein" /db_xref="WormBase:CBN20568" /db_xref="WormBase:WBGene00159293" CDS complement(join(67355..67436,67553..67716)) /locus_tag="CAEBREN_20568" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39325.1" /db_xref="WormBase:CBN20568" /db_xref="WormBase:WBGene00159293" /translation="MAKSPMIILLFFVLCTTTIAVDPLDFLFSSNMAHYPRYRPIAAS SAAVTPEFGKRAPPGCVCTEFLGCHGPGCLRRMYPKA" gene complement(<70469..>81024) /locus_tag="CAEBREN_28722" /db_xref="WormBase:WBGene00190687" mRNA complement(join(<70469..70689,70790..71376,71647..72820, 72866..73907,73954..74084,74916..74980,75028..75138, 75527..75580,75625..75857,75905..76419,76464..76567, 76695..77263,77313..77437,80418..>81024)) /locus_tag="CAEBREN_28722" /product="hypothetical protein" /db_xref="WormBase:CBN28722" /db_xref="WormBase:WBGene00190687" CDS complement(join(70469..70689,70790..71376,71647..72820, 72866..73907,73954..74084,74916..74980,75028..75138, 75527..75580,75625..75857,75905..76419,76464..76567, 76695..77263,77313..77437,80418..81024)) /locus_tag="CAEBREN_28722" /note="contains similarity to Pfam domain PF12166; contains similarity to Interpro domain IPR021999 (Protein of unknown function DUF3595)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39317.1" /db_xref="InterPro:IPR021999" /db_xref="PFAM:PF12166" /db_xref="WormBase:CBN28722" /db_xref="WormBase:WBGene00190687" /translation="MVYGEFVHILDYYFRQLREYSRQAQLERETADPERRRSSWSPKH WFGVKNGGNLPPDEILKLPVHFDDLPHPSTSSSHPHNYPDTTLSSSSAPSTSNYLSTS TYSDHRRSLYKVDVEKYWEQLLLHKLLPSPADRNMLTKSIVSSSGDSGIYDDEQRGIM PYIDDDDDLTPIIVARPPIGSGYHHGRNGWHRSPRQYLTNWWSDTLVKKLHTLANDTI ELLWRFFEVHVTKVVFIIIAYFIAFNMYAMYIPLVILLSLAVCLPSAADGIFSLFMCA YLFLVALSKMIYQLDIVPELAKIDRGVGAENCTFSNISMAAWFGLKKEGNSEPIYMLF GVIISIVALAFQSIVIYRQRHHRASLGIPEALRGKVFPDFFPNQYDRSLKHAIMFFID YGFFKFGMEITLTAMGIVVWLRMDLLAAIQCIWIMVFALNKRIVCRRLWVFYVIYMAI MFPLQFISIVGLPPDNCIEYPWSHWLRSQPEESSYNLGVLLGLSTYGVDWPNSFIYWD FYLLLLSSCQLAVFRKEGVENDSIYTDDQYIIKPNNPHHDFIDTKKSYVDYFKSFIFH YGHWITLMATLAAGIAGTSLFALGYIIFTLTMLWSGNNLYVMNARIRSFEHTLKRWNV LLAYTLVTILLKVLVQVIGCVFLNFFMKTGSTGKALCIVRQLFSVTCVNDKCHFMPGM DEFDKTCTVDKAESKIGFDIIALGFIIIQNRILHSWYFQHCMVEYRSEVILANRGAVL KNQLIEKEMKEQNEQQKAKFNDIRQRTEAIRDRYQKQIERGSAERDFEPKTYGQAKRA GDYYMFKYDPENDGLVEPIDSFVPEMDPKATAYDRLDPGQIMYAATAHDLDLAKTVQQ VKKGDTIKDPDDRALAAVSEPEPRKPAGADETDAPKPEDEDAKDSKVESTGKFIQKMI ASALDLCSVTLNKLCREHRYVGFVLSKEKQKLKAGHSESLSNTSRKLTEIRTDVDLPS LQLVHSENDVEKMENAVSVDWQQKSSATRLLNAVVNCVGAHTDILCYFFAIMTQAMTG GLITLPLPLMSLFWGNLSNPRPSKFFWVTMITYTEMVIVVKFICQFAFMPFNAQTWKT EHEMNPISLEKLFGVQKQSSFAIWDIILLFALFFHRYMLRKLGLWKDANLTETFKDDS TLSRSPAGSDAGSPKKKKNVEPKVVVTRSDAQEGTSGGEIVIPSDPNAVVAEDPDETV EEPPEKPSGPIGRFVHQLFHPKFRYIRDLYPIMFGIDVICFLIMTFGYSSFGEGGSGN VLDDVKASRIPVTLVVMLVGMTLAIIVDRALYLRKSVVGKLIYQIFMITFLHIWIFLV LPNMTRRAAAMNSVAKALYIIKSCYFLVSAWQIRNGYPELCIGNLLTHSYGMTNMIAF KVFMNIPFLFELRTAIDWTWTDTSMPLFDFFNMENFYAHIFNIKCARQFEAAYPAPRG IAKGKLVKYMMGFPIIIGVVVFIFSPLLLWSLLNQIGTISMPEKVTLRIAIEGYPPLY EMEAQGRNHDNKELSLITPDQLGVLNNALTEMYTARDGDSVLRSRMSVSYLKGYTYED ILIVRFRPESEIYWPISQDSRTAMIDKLDSVATSVNFEVTLEFTRPYDPNENTALKHS KSWLVPIAQDATIRKNIQDALNGTGSVAITIPSIMPAYIQVPNAGELSLPTSIGNSIV QDGSPPINTTGMTQTQISQAWFDTLTLNLQQGNGPNEKMWIGASKHPGDSKNAVWVPT ENTTYSHRPYLQVVGFIDRAFPSFLAKVFKGGVIAVYLSVILVVGRGIVRGVFTTSPS SVMFTELPNADHLLKICLDIYLVREAKDFMLEQDLFAKLIFLFRSPATLIEWTRMSKK KQE" gene complement(<83994..>90953) /locus_tag="CAEBREN_32206" /db_xref="WormBase:WBGene00194171" mRNA complement(join(<83994..84189,84261..84352,84866..84970, 86045..86218,87369..87524,88124..88432,88479..88784, 89374..89487,89709..89807,89822..90317,90372..90693, 90740..>90953)) /locus_tag="CAEBREN_32206" /product="hypothetical protein" /db_xref="WormBase:CBN32206" /db_xref="WormBase:WBGene00194171" CDS complement(join(83994..84189,84261..84352,84866..84970, 86045..86218,87369..87524,88124..88432,88479..88784, 89374..89487,89709..89807,89822..90317,90372..90693, 90740..90953)) /locus_tag="CAEBREN_32206" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39319.1" /db_xref="WormBase:CBN32206" /db_xref="WormBase:WBGene00194171" /translation="MTVPPVFKSCTVKLVLPAALLSGKNFEFEFLNLDFLFSAAIIRP CFLSIGYVVLALLSAVLPPIRKSLALPKSIGTFVTITFLFCLAVALGVGSYQISEQVV HKNDRTYICNRSDTTLFRSIGLVRFHPTGTFESTRAFLPEIIATSGSLLTFIIVMFLS HRDEQLDVVGDVVTVRSESGREQRRQRKMAAIMWSAIGNSLRRLTNFVIFLFTAYVGV VKPSVSNFTYFAAFLFISTWWATYTPLRHGVYNKIKKFLIFYSAIHLIVLYTYQIPIV HNSWLPTGSFLSRLFGLNVLMDSSCPDWWKFPFVAPDFDDNDLIMKWPLYANPIVVLV RFLRFEEYINMFYYLTVAQYKFTRNGSRQYIDDNDYGSSVHEERFVSAGTVETNVDDV GQLISVSESSASAPSGRGRGNTLLLSTASSSNEDEQGRARSRSPARNGEGQNSIPMRK VTSQVVDRNKLSNIFNSKFSIELKSEKTTKTKDSAPGEQESAASKGMIAVMTFVIFHS YSIALTAMMTWALLYHSIFGLALLILTCILWIFRDTRKSSFTMAPLILIYIEFLLVLQ YFLSMDIHAEIGDPGWMNFVGIQWATIPVHALIILCVQVSFLSAKLCLCTLTRRTLLS LPVFLLLRLARREKYYESLSDFERQRRINSYGTFGASKTGAGGVAVAKDPKSRKFAAF VEYLSNKVSIYFIFIVSFVLLMVATHFKPNFYNILFFALWALNLIYLKFSFRLYRGLA YAFWLTLTFYTSIVIIALYIYQFPGVSQWIIANTNLSKEWLDAIGLVDYSAIGESGAL FLQLFAPIALFVVTMLQLKFFHGPWSRATSPRRAEDNPPSSSTEVATTSGRANAAGEF SKRI" assembly_gap 87923..87932 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 93311..93320 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 95517..95526 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<97791..>104814) /locus_tag="CAEBREN_26133" /db_xref="WormBase:WBGene00164858" mRNA complement(join(<97791..97813,98285..98457,98529..98620, 99133..99237,100219..100392,101550..101705,102035..102295, 102342..102439,102494..102647,103572..103670, 103720..104182,104232..104553,104601..104699, 104748..>104814)) /locus_tag="CAEBREN_26133" /product="hypothetical protein" /db_xref="WormBase:CBN26133" /db_xref="WormBase:WBGene00164858" CDS complement(join(97791..97813,98285..98457,98529..98620, 99133..99237,100219..100392,101550..101705,102035..102295, 102342..102439,102494..102647,103572..103670, 103720..104182,104232..104553,104601..104699, 104748..104814)) /locus_tag="CAEBREN_26133" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39306.1" /db_xref="WormBase:CBN26133" /db_xref="WormBase:WBGene00164858" /translation="MTVPPVFKSCTVKLVLPAALLSAAIIRPCFLSIGYVILALLSAV LPPIRKSLALPKSIGTFVTITFLFCLAVALGVGSYQISEQVVHKNDRTYICNRSDTTL FRSIGLVRFHPTGTFESTRAFLPEIIATSGSLLTFIIVMFLSHRDEQLDVVGDVVTVR SESGREQRRQRKMAAIMWSAIGNSLRRLTNFVIFLFTAYVGVVKPSVSNFTYFAAFLF ISTWWATYTPLRHGVYNKIKKFLIFYSAIHLIVLYTYQIPIVHNSWLPTGSFLSRLFG LNVLMDSSCPDWWKFPFVAPDFDDNDLIMKWPLYANPIVVLMFYYLTVAQYKFTRNGS RQYIDDNDYGSSVHEELLSTASSSNEDEQGRARSRSPARNGEGQNSIPMRKVTSQVVD RNKLSNIFNTPGEQESAASKGMIAVMTFVIFHSYSIALTAMMTWALLYHSIFGLALLI LTCILWIFRDTRKSSFTMAPLILIYIEFLLVLQYFLSMDIHAEIGDPGWMNFVGIQWA TIPVHALIILCVQTLLSLPVFLLLRLARREKYYESLSDFERQRRINSYGTFGASKTGA GGVAVAKDPKSRKFAAFVEYLSNKVSIYFIFIVSFVLLMVATHFKPNFYNILFFALWA LNLIYLKFSFRLYRGLAYAFWLTLTFYTSIVIIALYIYQFPGVSQWIIANTNLSKEWL DAIGLVDYSAIGESGALFLQLFAPIALFVVTMLQLKFFHGPWSRATSPRRAEDNPPSS STEVATTSGRANAAVLKDDDF" gene complement(<107500..>107917) /locus_tag="CAEBREN_04906" /db_xref="WormBase:WBGene00143631" mRNA complement(join(<107500..107626,107676..>107917)) /locus_tag="CAEBREN_04906" /product="hypothetical protein" /db_xref="WormBase:CBN04906" /db_xref="WormBase:WBGene00143631" CDS complement(join(107500..107626,107676..107917)) /locus_tag="CAEBREN_04906" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39313.1" /db_xref="WormBase:CBN04906" /db_xref="WormBase:WBGene00143631" /translation="MSNSMDVNTLMRINYRTVEVCLSAWTNQDLNFFLTSWAAGKSNS KMECANLNISEVIDLGIVLNSLSPEFRDPRTTKRKFSRDGKTYSVFGGIDIQRNDGKV ATIQWIRHAMEDGIESVPQE" gene complement(<109967..>111051) /locus_tag="CAEBREN_18368" /db_xref="WormBase:WBGene00157093" mRNA complement(join(<109967..110234,110285..>111051)) /locus_tag="CAEBREN_18368" /product="hypothetical protein" /db_xref="WormBase:CBN18368" /db_xref="WormBase:WBGene00157093" CDS complement(join(109967..110234,110285..111051)) /locus_tag="CAEBREN_18368" /note="contains similarity to Pfam domain PF07735; contains similarity to Interpro domain IPR012885 (F-box associated domain, type 2)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39289.1" /db_xref="InterPro:IPR012885" /db_xref="PFAM:PF07735" /db_xref="WormBase:CBN18368" /db_xref="WormBase:WBGene00157093" /translation="MSKKPTAVQLDFVLGPFVRLRFPNGGWEEWGFKPDEKHAQKDCY SGQRGCFQEYRFHCDHLVPTILKLLDNILYVFNSELHAAILAESRLKNDEFDSVLNWI KFNSTRETMRSIQFYLDSEMMFYHALEFLKSFKKQIPHLTCSVSSQKDSEISKRFRRE SEICNIDDLCISTNLMTNSMDVNTLTRINYRSVEICRSTWTNRDVNFFLKSWASGNSN SRMEYADLNINEVIDLDVILNGLSPEFRDPRTTKRKFVRDGKTYSVFGGIDIQRNDGK VATIQWIRHAMKDDIDSIPQEWIDEFESKRLVNTPPLFEEKEVLEVLREKRKFLLPKW YDMSLYIIVW" gene <111414..>113807 /locus_tag="CAEBREN_10573" /db_xref="WormBase:WBGene00149298" mRNA join(<111414..111664,111710..112285,112341..112475, 112782..112903,112957..113057,113111..113385, 113438..>113807) /locus_tag="CAEBREN_10573" /product="hypothetical protein" /db_xref="WormBase:CBN10573" /db_xref="WormBase:WBGene00149298" CDS join(111414..111664,111710..112285,112341..112475, 112782..112903,112957..113057,113111..113385, 113438..113807) /locus_tag="CAEBREN_10573" /note="contains similarity to Pfam domain PF06432; contains similarity to Interpro domain IPR009450 (Phosphatidylinositol N-acetylglucosaminyltransferase)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39295.1" /db_xref="InterPro:IPR009450" /db_xref="PFAM:PF06432" /db_xref="WormBase:CBN10573" /db_xref="WormBase:WBGene00149298" /translation="MTTIPLFRFPCLVQESLFKILEYPDIFQLSFCSEKTKSAIKKFR WKTVAGILFHFRQDLATIALIFPNKDYKIVMELMKSPIPITFLPIFKKGSELEFFVRL QRHALDLFSKTPNLFFYYVTDDCTKFKQVESVRRARFPSDVKVEHLEEFIKNHQELQY LTLDKQVTGEILPTSNINDIKSLWILEPSLNFDTFLLNFRGENVALFTPVGYESHIEN MIENWLNGRYSENLRVVFIASKERDFPDFGLVDKFEFMEYFSIWDEDETPPIYECDEV MQFQFSLEPDVFDCREAAFIRRELDGKSALASFRYEPHYFVFYVWVCVRQMTSPTGWQ KILYKKQPFPDNYSGGDAQFLKELKKNVSVVHYDYRSAVFGCMNFLTHLDMLTMYFVL FLNILHANWSINVLYTVFTSTILFYFFFCEYLSSNPANGKEHGRTIVTLFLFAYAFTP VIRTLTTSISTDTIYATSIITAILSCFFHDYGVKAPVVSYPTSVSSGLSSAIFLLSRL EDDKPTLLLLVVAFTLHAYGAEFRNRLFHVYPRFSSFAFCLLSSFSIYCISAFSVELS VFWALLHVFILFICPLILVLKQTGKCTIHGPWDEAVPIKSVKN" gene <114133..>115603 /locus_tag="CAEBREN_19122" /db_xref="WormBase:WBGene00157847" mRNA join(<114133..114204,114271..114424,114719..115359, 115409..>115603) /locus_tag="CAEBREN_19122" /product="hypothetical protein" /db_xref="WormBase:CBN19122" /db_xref="WormBase:WBGene00157847" CDS join(114133..114204,114271..114424,114719..115359, 115409..115603) /locus_tag="CAEBREN_19122" /note="contains similarity to Pfam domain PF03643; contains similarity to Interpro domain IPR005377 (Vacuolar protein sorting-associated protein 26)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39285.1" /db_xref="InterPro:IPR005377" /db_xref="PFAM:PF03643" /db_xref="WormBase:CBN19122" /db_xref="WormBase:WBGene00157847" /translation="MAMLFGFGQSAEIQIRLSNEDTRKIVKARGDDGNMHDHFLYYDG ESVAGVVLVNLKKANHKFEHQGIRIEFIGQIEVYYDRGNQQDFISLTRELARPGDLTQ NAQFPFEFNNVEKPFETYMGTNVKLRYFLRVTVIRRLTDLTKELDLVVHALSSYPDND KSIKMEVGIEDCLHIEFEYNKNKYHLQDVIVGKIYFLLVRIKIKYMEIAILKTEIVGS GPNTFKESETVAKFEIMDGAPVRGESIPIRLFLAGYDLAPSMRDVGKKFSVKYFLNLV LIDEEDRRYFKQQEVTLWRKADKVMRHPGSQDDEMPTSIPGTQKFNAQSVVEHPKPES PRSDPKSGSTSPDDNSDSS" gene <116044..>116661 /locus_tag="CAEBREN_21934" /db_xref="WormBase:WBGene00160659" mRNA join(<116044..116109,116287..>116661) /locus_tag="CAEBREN_21934" /product="hypothetical protein" /db_xref="WormBase:CBN21934" /db_xref="WormBase:WBGene00160659" CDS join(116044..116109,116287..116661) /locus_tag="CAEBREN_21934" /note="contains similarity to Pfam domain PF04588; contains similarity to Interpro domain IPR007667 (Hypoxia induced protein, conserved region)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39304.1" /db_xref="InterPro:IPR007667" /db_xref="PFAM:PF04588" /db_xref="WormBase:CBN21934" /db_xref="WormBase:WBGene00160659" /translation="MSEKLNTAPHDFRDHKAHMQWTQERDEYRANVPLIPQDMSGGSR GQTAATTVLQKALNNPLVPLGMLATTGCLIGMMVATLRRSSRDAQLFMRGRVVAQGLT VAALVGGAVMFGIGAPTDAALRAPGKGQANVVSLTPPPAVQNHH" gene complement(<116997..>117877) /locus_tag="CAEBREN_08946" /db_xref="WormBase:WBGene00147671" mRNA complement(join(<116997..117176,117234..117595, 117650..117719,117773..>117877)) /locus_tag="CAEBREN_08946" /product="hypothetical protein" /db_xref="WormBase:CBN08946" /db_xref="WormBase:WBGene00147671" CDS complement(join(116997..117176,117234..117595, 117650..117719,117773..117877)) /locus_tag="CAEBREN_08946" /note="contains similarity to Pfam domain PF00153; contains similarity to Interpro domains IPR018108 (Mitochondrial substrate/solute carrier), IPR001993 (Mitochondrial substrate carrier)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39287.1" /db_xref="InterPro:IPR001993" /db_xref="InterPro:IPR018108" /db_xref="PFAM:PF00153" /db_xref="WormBase:CBN08946" /db_xref="WormBase:WBGene00147671" /translation="MKQEGIRKLYRGLLPPLIMRMNNRALMFGVYDNFESLLSCSASS NTSLTICHAQAGFLSGICEAMLCPLERVQVLLQTSKYHDQFKHTLNAFNQLRDYGYRE YYRGFSVVLLRNGLSNALYFTLKGPLKQKVLELLHDTNKPSSAHEIIGDFVSGAILGA FISTLFFPLGVVKNHMQAKVGVPYDSAIQVFREVWKERNRSLRGLYLGVHLNFTRSLL AWGIITGMHGVIKRKLAQYE" gene <119210..>120817 /locus_tag="CAEBREN_00334" /db_xref="WormBase:WBGene00139059" mRNA join(<119210..119355,119399..119462,120122..120601, 120650..>120817) /locus_tag="CAEBREN_00334" /product="hypothetical protein" /db_xref="WormBase:CBN00334" /db_xref="WormBase:WBGene00139059" CDS join(119210..119355,119399..119462,120122..120601, 120650..120817) /locus_tag="CAEBREN_00334" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39314.1" /db_xref="WormBase:CBN00334" /db_xref="WormBase:WBGene00139059" /translation="MDFLDDFDPSDDEDQTQKTNNYPPFIPNFHDKYWYRDVSKENQT ATAINEIDLFRVADFFDAGNYEAAEKILSELRENTKNNRTHEIMLIDSLLQCSIKKSD SFESSTCLQLLSDYESLLVDFGDQLQFLRTKALLLIKLPFNEQIQNDFKNTMALLCQL CGSFENWQLFENGSKFFNDKENFGLRMKMKRVLHYEIEHSKGFVRENLQRRMKRIEEE VQVLEKKLKQEDISSILSSLNDHKDVFSPESASEFRAHESRSKNKLIPSSDQPAVISD FFHRFSFLS" gene <122377..>124275 /locus_tag="CAEBREN_07614" /db_xref="WormBase:WBGene00146339" mRNA join(<122377..122544,122625..122746,123404..123501, 123559..123618,123842..123947,124000..124063, 124192..>124275) /locus_tag="CAEBREN_07614" /product="hypothetical protein" /db_xref="WormBase:CBN07614" /db_xref="WormBase:WBGene00146339" CDS join(122377..122544,122625..122746,123404..123501, 123559..123618,123842..123947,124000..124063, 124192..124275) /locus_tag="CAEBREN_07614" /note="contains similarity to Pfam domain PF06879; contains similarity to Interpro domain IPR009673 (Protein of unknown function DUF1261)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39326.1" /db_xref="InterPro:IPR009673" /db_xref="PFAM:PF06879" /db_xref="WormBase:CBN07614" /db_xref="WormBase:WBGene00146339" /translation="MRSVALCLLLLVGASQSYLLQDYTLSDDEIQLMAFREQPQNAAI SACQDIQFNYCQTTFNTFFGMDESISWRNGTYIFNTVQKYLMMNVTELVKVCNTRTQF YQCLGSSYYTCMNLYTLLNKPQPDFSNTFDYVRTFRGLEGMCVGGFSEVVYQWDCLGT FPTTMAYQNCINNFNQTVAANNFCPAVQQTGVCLNDAYNAACGAPAAGYFGCELFRIT FDNSCWGLRCMVDGA" gene <128295..>129284 /locus_tag="CAEBREN_03651" /db_xref="WormBase:WBGene00142376" mRNA join(<128295..128679,128726..128785,128890..128995, 129041..129104,129216..>129284) /locus_tag="CAEBREN_03651" /product="hypothetical protein" /db_xref="WormBase:CBN03651" /db_xref="WormBase:WBGene00142376" CDS join(128295..128679,128726..128785,128890..128995, 129041..129104,129216..129284) /locus_tag="CAEBREN_03651" /note="contains similarity to Pfam domain PF06879; contains similarity to Interpro domain IPR009673 (Protein of unknown function DUF1261)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39302.1" /db_xref="InterPro:IPR009673" /db_xref="PFAM:PF06879" /db_xref="WormBase:CBN03651" /db_xref="WormBase:WBGene00142376" /translation="MRSAVIALVVFVAVSRSDFLLPFQLSDDLINYTAQLEQPINNET VCPLAQLNYCQYSFNMNFGLNSSITYSNGSDIFSTIQNYMNMNTTELNKVCKARTNFY HCLGHSYFTCMNLHTRLQSNNTDSSNGFDYVRTFRSLEWICGGGLRDANNQFTSFGSF SNSTIYQGCMTTFNQTATTNNFCSSVQATGNCLSSANSNSTGQAAAGRFGCESFRYTF NKACPGLQC" gene <131018..>131837 /locus_tag="CAEBREN_09541" /db_xref="WormBase:WBGene00148266" mRNA join(<131018..131134,131187..>131837) /locus_tag="CAEBREN_09541" /product="hypothetical protein" /db_xref="WormBase:CBN09541" /db_xref="WormBase:WBGene00148266" CDS join(131018..131134,131187..131837) /locus_tag="CAEBREN_09541" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39296.1" /db_xref="WormBase:CBN09541" /db_xref="WormBase:WBGene00148266" /translation="MDDNNQYGDFDDPEGEELSDFADNKPDMNRAMESAKVSENPGFD ELDVQEEYQEEVFYEEPQERADGYPDVVLYDDEYAEEPEYIVDPEGIILEEEVLYEVD GGEAHVDTDKGTKIDRVRSPKTTSKERSRFYNLPPERKQHYHQNRVESIRRQREEANH ILSIPTSQATPEIFAKAQEILEKQSKETEKYKMRYQNMSVDERQELRRKQAAAKKIRQ QAAFDPSDPYGVFAEMEKEVVERTKKAWKIVMAQRGM" gene <142866..>143989 /locus_tag="CAEBREN_20302" /db_xref="WormBase:WBGene00159027" mRNA join(<142866..143016,143406..>143989) /locus_tag="CAEBREN_20302" /product="hypothetical protein" /db_xref="WormBase:CBN20302" /db_xref="WormBase:WBGene00159027" CDS join(142866..143016,143406..143989) /locus_tag="CAEBREN_20302" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39324.1" /db_xref="WormBase:CBN20302" /db_xref="WormBase:WBGene00159027" /translation="MDEAPEFDNEEEVETEHYVEDRFGVLAKMEMQMKRQLEEARRKK ERSEASAYRPSKKPFKHNARRHVQETPEMIDEVEKVMQNALPGTFEDVANEREQKDRS TLYPYYPRSMRPSQMRKRTGATDVTAPSDRFGVVAKRRKIETDKLPTSSLYPYYPSIR EVKEKERRNAAEISKNQESVAEERDEKSRKKIHEKNAADVKQGTHDAPSKTMEAVDER EKRNHQSSSHPYYPGRARWMRESENS" gene <144705..>147125 /locus_tag="CAEBREN_30599" /db_xref="WormBase:WBGene00192564" mRNA join(<144705..144797,144921..145083,146071..146502, 146548..>147125) /locus_tag="CAEBREN_30599" /product="hypothetical protein" /db_xref="WormBase:CBN30599" /db_xref="WormBase:WBGene00192564" CDS join(144705..144797,144921..145083,146071..146502, 146548..147125) /locus_tag="CAEBREN_30599" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39318.1" /db_xref="WormBase:CBN30599" /db_xref="WormBase:WBGene00192564" /translation="MSKMIFDSRIATSSEYNPCLNSASEYTVANENISNEENIDVDNE EEWKRVKRKEEMIAEKRRIHNEKRRSRYEEMPDEEKQAYIRKGPSKEHVDNGQLLPTP TMREAPDVSPKRRQNILENENYIESIKARLQAMTRKERRIFIRKRTQAHIDYHQNEIS NLKKTEEIRTQNRSLTSNKGEEQHDPLNLLGVTSEMQKEVIQQSVEAKDHQEEERTLL ETLNVAEPYSDDLTSNVLPKTGAKSKPKPDKSQLAQRERERKDTANAAQRARYHAMTP EERTIYNKKWRDSRKEKGNAARRAKYQAMTPEERRSCRTRQTAEERRIHNENARMKYL EVKNVSRYAKNRKKPTIEEEDKKRNVSEVESQNEKEICNGKPPEHINHHPDEQLQPEK MIAATTQETIAANKFRLCGFFPLTISYDN" gene <147944..>148955 /locus_tag="CAEBREN_20390" /db_xref="WormBase:WBGene00159115" mRNA join(<147944..148328,148375..148434,148623..148728, 148774..148837,148887..>148955) /locus_tag="CAEBREN_20390" /product="hypothetical protein" /db_xref="WormBase:CBN20390" /db_xref="WormBase:WBGene00159115" CDS join(147944..148328,148375..148434,148623..148728, 148774..148837,148887..148955) /locus_tag="CAEBREN_20390" /note="contains similarity to Pfam domain PF06879; contains similarity to Interpro domain IPR009673 (Protein of unknown function DUF1261)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39297.1" /db_xref="InterPro:IPR009673" /db_xref="PFAM:PF06879" /db_xref="WormBase:CBN20390" /db_xref="WormBase:WBGene00159115" /translation="MRSAVIALLVFVAISRSDFLLPFQLSDDLINYTAQLEQPINNET VCPLAQLNYCQYSFNMNFGLNSSITYSNGSDIFSTIQNYMNMNTTELNKVCKARTNFY HCLGHSYFTCMNLHTRLQSNNTDSSNGFDYVRTFRSLEWICGGGLRDANNQFTSFGSF SNSTVYQGCMTTFNQTATTSNFCSSVQSTGNCLSSANSNSTGQAAAGRFGCESFRYTF NKACPGLQC" gene <151897..>152858 /locus_tag="CAEBREN_05571" /db_xref="WormBase:WBGene00144296" mRNA join(<151897..152281,152329..152388,152518..152623, 152674..152737,152784..>152858) /locus_tag="CAEBREN_05571" /product="hypothetical protein" /db_xref="WormBase:CBN05571" /db_xref="WormBase:WBGene00144296" CDS join(151897..152281,152329..152388,152518..152623, 152674..152737,152784..152858) /locus_tag="CAEBREN_05571" /note="contains similarity to Pfam domain PF06879; contains similarity to Interpro domain IPR009673 (Protein of unknown function DUF1261)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39312.1" /db_xref="InterPro:IPR009673" /db_xref="PFAM:PF06879" /db_xref="WormBase:CBN05571" /db_xref="WormBase:WBGene00144296" /translation="MRSAVIALVVFVAISRSDFLLPFQLSDDLINYTAQLEQPINNET VCPLAQLNYCQYSFNMNFGLDASVSYNNGTVIFNTIQSFMSMNVTELNRVCKARTNFY HCLGHSYYTCMNLHTRLESNTTDSSNGFDYVRTFRTLEWVCGGGYRETINQFDCFGSV PTTSAYQDCMTSFNQTVSTSNFCPAIQQNSNCLKSAYQHHCEDSYAGLFGCESFRYTF SKACPTLKCTM" gene <156546..>157598 /locus_tag="CAEBREN_07716" /db_xref="WormBase:WBGene00146441" mRNA join(<156546..156710,156752..156873,156947..157035, 157081..157140,157185..157290,157388..>157598) /locus_tag="CAEBREN_07716" /product="hypothetical protein" /db_xref="WormBase:CBN07716" /db_xref="WormBase:WBGene00146441" CDS join(156546..156710,156752..156873,156947..157035, 157081..157140,157185..157290,157388..157598) /locus_tag="CAEBREN_07716" /note="contains similarity to Pfam domain PF06879; contains similarity to Interpro domain IPR009673 (Protein of unknown function DUF1261)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39298.1" /db_xref="InterPro:IPR009673" /db_xref="PFAM:PF06879" /db_xref="WormBase:CBN07716" /db_xref="WormBase:WBGene00146441" /translation="MRSGVIALLVFVAISRSDFLLPFQLSDDLINYTAQLEQPINNET ICQFTQLNFCQNAFNNYLGINTSLTYRDGSNLFNSIQSLLNMNVTEFNKVCQARTNFY HCLGQSYYACMNLHTRLENDAANAFDYVRSFRGLEWICGGGFRESVGQYDCLEGIPTT NTYQSCINYFHQTVSTGNFCPFIQLTGDCLNDGYKSVCGDNAVCFSIFLHYSNLISRL VIMDVRASVTSSTGLAQDSSAQGEINKFRKVL" gene complement(<157868..>158240) /locus_tag="CAEBREN_15780" /db_xref="WormBase:WBGene00154505" mRNA complement(join(<157868..157981,158039..158097, 158147..>158240)) /locus_tag="CAEBREN_15780" /product="hypothetical protein" /db_xref="WormBase:CBN15780" /db_xref="WormBase:WBGene00154505" CDS complement(join(157868..157981,158039..158097, 158147..158240)) /locus_tag="CAEBREN_15780" /note="contains similarity to Pfam domain PF05493; contains similarity to Interpro domain IPR008389 (ATPase, V0 complex, subunit E)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39309.1" /db_xref="InterPro:IPR008389" /db_xref="PFAM:PF05493" /db_xref="WormBase:CBN15780" /db_xref="WormBase:WBGene00154505" /translation="MGILIPLVSVSAFWAIIGFGGPWIVPKGPNRGIIQLMIVMTAVC CWMFWIMVFLHQLNPLIGPQINVKTIRWISEKWGNADPSKLIDN" gene <158892..>160399 /locus_tag="CAEBREN_05754" /db_xref="WormBase:WBGene00144479" mRNA join(<158892..158938,158986..159105,160279..>160399) /locus_tag="CAEBREN_05754" /product="hypothetical protein" /db_xref="WormBase:CBN05754" /db_xref="WormBase:WBGene00144479" CDS join(158892..158938,158986..159105,160279..160399) /locus_tag="CAEBREN_05754" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39286.1" /db_xref="WormBase:CBN05754" /db_xref="WormBase:WBGene00144479" /translation="MGKICPLMGPKMSAFCMVMSVWGVIFLGLLGVFFYIQAVTLFPD LHFEGEGKVPSSVIDAKYNEKATQCWIAAGLYAVTLIAVFWQNKYNTQQIF" gene complement(<160868..>161491) /locus_tag="CAEBREN_19909" /db_xref="WormBase:WBGene00158634" mRNA complement(join(<160868..160902,160953..161040, 161420..>161491)) /locus_tag="CAEBREN_19909" /product="hypothetical protein" /db_xref="WormBase:CBN19909" /db_xref="WormBase:WBGene00158634" CDS complement(join(160868..160902,160953..161040, 161420..161491)) /locus_tag="CAEBREN_19909" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39291.1" /db_xref="WormBase:CBN19909" /db_xref="WormBase:WBGene00158634" /translation="MSGRQGGKAKPLKAPKKGEKDLSEEDIEFKKKQQEEAKKIKEMA AKAGQRGPLLGGGIKKSGKK" gene <161616..>162670 /locus_tag="CAEBREN_05692" /db_xref="WormBase:WBGene00144417" mRNA join(<161616..161820,161864..161993,162042..162160, 162210..162328,162373..162498,162542..>162670) /locus_tag="CAEBREN_05692" /product="hypothetical protein" /db_xref="WormBase:CBN05692" /db_xref="WormBase:WBGene00144417" CDS join(161616..161820,161864..161993,162042..162160, 162210..162328,162373..162498,162542..162670) /locus_tag="CAEBREN_05692" /note="contains similarity to Pfam domains; contains similarity to Interpro domains IPR004033 (UbiE/COQ5 methyltransferase), IPR013216 (Methyltransferase type 11), IPR007823 (Methyltransferase-related)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39290.1" /db_xref="InterPro:IPR004033" /db_xref="InterPro:IPR007823" /db_xref="InterPro:IPR013216" /db_xref="WormBase:CBN05692" /db_xref="WormBase:WBGene00144417" /translation="MNLLLHIFSLLGRLWLWFFDRFIMYPLMKIVAPKLGVRFMNLGY WPSDKPEDDKLRAFMEEVGHLEDYEPHKSHVYLYEKAMSMHPNYPDFENLEILEVSCG QGYSLEWIENWHGPTKCLIGCDKVVTRNVNNIVYGDATNLPFADDSFDFILNVEAAHL YSDFRKFFKECFRVLRSGGVFCYVDVRYPRDVSVLNDTAKSIGFNTKHLELCTAEVVE GLNHTARKHDELLERAPLFVKMFKKSLRATYCAPGTDAYERLRTEQKIYAAVMWMKD" gene complement(<162920..>164244) /locus_tag="CAEBREN_22940" /db_xref="WormBase:WBGene00161665" mRNA complement(join(<162920..163246,163293..164135, 164185..>164244)) /locus_tag="CAEBREN_22940" /product="hypothetical protein" /db_xref="WormBase:CBN22940" /db_xref="WormBase:WBGene00161665" CDS complement(join(162920..163246,163293..164135, 164185..164244)) /locus_tag="CAEBREN_22940" /note="contains similarity to Pfam domains; contains similarity to Interpro domains IPR000717 (Proteasome component (PCI) domain), IPR019585 (26S proteasome, regulatory subunit Rpn7)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39282.1" /db_xref="InterPro:IPR000717" /db_xref="InterPro:IPR019585" /db_xref="WormBase:CBN22940" /db_xref="WormBase:WBGene00161665" /translation="MSEAPKQAKKPVDDGNFDKEVISRWPDLELAQTRFMLNHPEVDA SVKEAKLAKLQQDIKENDMAPFYELVCQDFKIAVDATQLAAMKAANTKRIAEITAEIE DAEKNLGESEVRQGLLRKFEYYCQIGDKENAQKAYTATYEKTVGMGYRIDLVFAMIRV GLFFLDHHLINKYITKAKELMEQGGDWERKNRLRSYEALYRMSVRDFAGAADLFLEAV PTFGSYELMTYENLILYTVITTTFALDRPDLRTKVIRCNEVQEQLTGGGLNGTLIPVR EYLESYYDCHYDRFFIQLAALESERFKFDRYLSPHFNYYSRGMRQRAYEQFLTPYKTV RIDMMAKDFGVSRTFIDRELHRLIATGQLQCRIDAVNGVIEVNHRDSKNHLYKAVIKD GDILLNRIQKLARVINA" gene <164650..>165693 /locus_tag="CAEBREN_14890" /db_xref="WormBase:WBGene00153615" mRNA join(<164650..164788,164844..164944,164989..>165693) /locus_tag="CAEBREN_14890" /product="hypothetical protein" /db_xref="WormBase:CBN14890" /db_xref="WormBase:WBGene00153615" CDS join(164650..164788,164844..164944,164989..165693) /locus_tag="CAEBREN_14890" /note="contains similarity to Pfam domain PF00627; contains similarity to Interpro domains IPR000449 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39323.1" /db_xref="InterPro:IPR000449" /db_xref="InterPro:IPR015940" /db_xref="PFAM:PF00627" /db_xref="WormBase:CBN14890" /db_xref="WormBase:WBGene00153615" /translation="MVYLHMKTTSKEIPISDIIATGHIPFFTDLSENSAEFKGQSNID RFRLIYNGKVLKEEELTKITDNDSIRVILLPEPIIKKPIEDASKVSVDKEIHILTAPF RLREDTRLGPFADSFDLPDHVSNILKAHPQLVFDSHFLVAMSDWFMFRSYCTRNVYKG DATRNMFKYQNPEFLKIVKEIVFRLGGKFGYVFGQQRLAQRQAVAPAPAAAPPITQAL LQNALQAALAGVSANPQARAPGPAAALAPAPAAAPAPVRPQPPPQPAEEPMQQGYEQQ AAILREYGFENDDLIQLALEQCNGDVHAAMEFLIELQN" gene <171274..>172430 /locus_tag="CAEBREN_30523" /db_xref="WormBase:WBGene00192488" mRNA join(<171274..171286,171465..171593,171849..171956, 172001..172132,172182..172281,172328..>172430) /locus_tag="CAEBREN_30523" /product="hypothetical protein" /db_xref="WormBase:CBN30523" /db_xref="WormBase:WBGene00192488" CDS join(171274..171286,171465..171593,171849..171956, 172001..172132,172182..172281,172328..172430) /locus_tag="CAEBREN_30523" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39316.1" /db_xref="WormBase:CBN30523" /db_xref="WormBase:WBGene00192488" /translation="MKKKDSPNTFITMNTISEKLSTDHQNYFSMPAPPKPTRICGYFG VHKISIFGICFNAIFLFAAYVYALVRLIQKTPKNYVEFIVICSIVIVLILKFSMLFIM AVSCARPKFLLPYIVLNTILFFAYAGAVIGSTITVPDEIREEINGQDRSSKIADIILL RVAFLVFGAFEIFFIYSYIWTYVDCRRLYLFNRR" gene <172615..>174845 /locus_tag="CAEBREN_28608" /db_xref="WormBase:WBGene00190573" mRNA join(<172615..172622,173178..173313,174235..174363, 174414..174554,174609..>174845) /locus_tag="CAEBREN_28608" /product="hypothetical protein" /db_xref="WormBase:CBN28608" /db_xref="WormBase:WBGene00190573" CDS join(172615..172622,173178..173313,174235..174363, 174414..174554,174609..174845) /locus_tag="CAEBREN_28608" /note="contains similarity to Pfam domain PF10184; contains similarity to Interpro domain IPR018790 (Protein of unknown function DUF2358)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39322.1" /db_xref="InterPro:IPR018790" /db_xref="PFAM:PF10184" /db_xref="WormBase:CBN28608" /db_xref="WormBase:WBGene00190573" /translation="MLQNEHIHSMQMRVLNSLPQNNQIPPHSLLDPRRRGERRMQKPE SYKTMLLPSRVSSIAKAIPCRCFSIDFSHEKPAPHQLEHVTTRLNETVPLMFRQRMDY TFYRRDVVCDDQIFSIQKRGIEQLMSHFGMIGTLGQVFLPHVEMEVLSVVPVIDEGNV RLRWRVKYVSFLRLLTNPRLLRFDYRVKNLSWFDGYSVLTVDGNGEVYKVTLQKVF" assembly_gap 173411..174108 /estimated_length=698 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <175446..>179727 /locus_tag="CAEBREN_01708" /db_xref="WormBase:WBGene00140433" mRNA join(<175446..175551,175597..175684,175951..176357, 176410..176568,176627..177256,177306..178093, 178147..>179727) /locus_tag="CAEBREN_01708" /product="hypothetical protein" /db_xref="WormBase:CBN01708" /db_xref="WormBase:WBGene00140433" CDS join(175446..175551,175597..175684,175951..176357, 176410..176568,176627..177256,177306..178093, 178147..179727) /locus_tag="CAEBREN_01708" /note="contains similarity to Pfam domains; contains similarity to Interpro domains IPR000330 (SNF2-related), IPR014001 (DEAD-like helicase, N-terminal), IPR001650 (DNA/RNA helicase, C-terminal), IPR000276 (7TM GPCR, rhodopsin-like)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39315.1" /db_xref="InterPro:IPR000276" /db_xref="InterPro:IPR000330" /db_xref="InterPro:IPR001650" /db_xref="InterPro:IPR014001" /db_xref="WormBase:CBN01708" /db_xref="WormBase:WBGene00140433" /translation="MSEEKEEESSVKEEPEDAEVEEEDVERMERGDEKKEEAAEEEEQ ELVNIRIPTQTKKSLKRKHIRTDFGAADLEADVSEAQRLEKQRLERLEKIKPENDHIQ QIESLFLSGAGESALPQLDIDDDDFEQMFGFNVESDNKRFRDKFENEQKPDAYFLNQP LHHLPSTSRGPVDVVDLTMDDSDDDCMITDIKSVIPASVPGRRMRWAQAEKDRIDADQ MEIQHNVEARRLQKMRSAKDLESTEKKGGRLLVNAGHPEEDPDIFVIAHLTHVLQPHQ LGGIRFMYDNTIESLSEYKRSDGFGCILAHSMGLGKTIQVITFSEIFLRATKAKKVLI IVPINTIQNWYAEYDKWIPKFSDTGDRIRNFEVFLLGDGVKTFDQRVNLIEEWDQKGG ILLIGYDMFRLLIKMTMPKKAKKGRPKLNLFGISSGSSRGDQYDDAQAREEEMEFETG FTNGGRVRQEAYSLIRHALLEPGPDLVVCDEGHKIKNITAEISTTLGAIVTKRRIVLT GYPLQNNLMEYFCMIDFVRPKYLGVRKSFIERFEKPIKNGQCVDSSPADVKLALQRTH VLVELVKGFVQRRTHHLLKRILPESKEYVLLLRKSQIQRQLYRNFVLWAKAEIAANND SVFNPLMAFSACSKIWNHPDILFKVVEQKRKNEEEKRRLEYQKFQLQQQKQQQQQQLQ QQQQQHGMMMMMGHNGMMPGFGAQFPPQQLPNGMNGMNGMMMSNNPWQHNHHQNNYQI PSPFTISSSPSTPTTSSGTPKPGSKKQRKQRTTKKSAGRSDEEDEGDEKESRMKYDWT FELFEKYQEGVLENGYKIVVSLEILDESTRIGEKILIFSQNLTALDMLEEILRKRQIA EKDDKYGERWEKNRNYLRLDGTTSGADREKLINRFNSEPGLRLFLISTRAGSLGINLV SANRCIIIDACWNPCHDAQAVCRVYRYGQQKKTFVYRLIMDNSMERSIFNRQISKHGL QQRVVDDAQVDANISQKELETLLMYDEAQDVKHDKWDTNDWDFGDTVLDTITKKMSQM FSQKPFLHETLIMESEQSLSEQEKREAQLLFERERRMENYDPSSLGSSNFYNNMPGSS SMMPMYNNNNFNTWPNPPPPQQQQQFQTNFQQPPYPNQSPFPQPSPFPNNIAPPRPTP TPHTLRLNVGQFHQQGGHTMTSYNNGYVNNNSMGSQHQMLAPIDPSAFPGACMSRKPV FSAAGVIQYVVTDRGWYRKKHLKNYNFGNLQHSFSQSLVFVSNCARCQ" assembly_gap 181836..181845 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<182653..>184588) /locus_tag="CAEBREN_08434" /db_xref="WormBase:WBGene00147159" mRNA complement(join(<182653..182882,182929..183355, 183535..183642,183903..184143,184191..184288, 184514..>184588)) /locus_tag="CAEBREN_08434" /product="hypothetical protein" /db_xref="WormBase:CBN08434" /db_xref="WormBase:WBGene00147159" CDS complement(join(182653..182882,182929..183355, 183535..183642,183903..184143,184191..184288, 184514..184588)) /locus_tag="CAEBREN_08434" /note="contains similarity to Pfam domain PF00149; contains similarity to Interpro domains IPR004843 (Metallo-dependent phosphatase), IPR006186 (Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39288.1" /db_xref="InterPro:IPR004843" /db_xref="InterPro:IPR006186" /db_xref="PFAM:PF00149" /db_xref="WormBase:CBN08434" /db_xref="WormBase:WBGene00147159" /translation="MIVRIEKFGTLEGFADSDIHEMLKTMKELLEPLPCLIEVVAPVI VFGDIHGQLSDLMEFTKEVGRPPDFQYLFLGDYVDRASKSLEVVVWLFCMKILYPKKV HLLRGNHEVRRVNALYGFREEMLRKRNGQLWKMFNDVFAELPICASINRKILCMHGGI SPKIESWLSLSEMSKPRIHGDCESGIYVDLMWSDPNRKEDKCQFNVHRGISSLFGKTA VEELCALLDIDMIIRAHELKNRGHEFEFDNRLLTVFSAPYYSGHNSNSGSVVAISQSL KVQIITLKPKKGADMMRLDKQTLHDFEKNFQPLDEDPLKTVTCKSNFPPANSSHTSPI LGAYSMFAHETKNCKKTNEAPLKPLVWLVQSSFSILFLTCSVFARPKRIPRWQRFVKR " assembly_gap 191793..192958 /estimated_length=1166 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <195976..>197746 /locus_tag="CAEBREN_00181" /db_xref="WormBase:WBGene00138906" mRNA join(<195976..196029,196082..196841,197065..197532, 197580..>197746) /locus_tag="CAEBREN_00181" /product="hypothetical protein" /db_xref="WormBase:CBN00181" /db_xref="WormBase:WBGene00138906" CDS join(195976..196029,196082..196841,197065..197532, 197580..197746) /locus_tag="CAEBREN_00181" /note="contains similarity to Interpro domain IPR013084 (Zinc finger, CCHC retroviral-type)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39283.1" /db_xref="InterPro:IPR013084" /db_xref="WormBase:CBN00181" /db_xref="WormBase:WBGene00138906" /translation="MKKQRQERSGADNCNAFVALTYYFKDERAPNPWPQVPKQSGGAF GSLGRSSAQPKKFGGGFGSSVSSSTGFGGSLIGRSSGGGGGGVEPDPDTIFNLLPSSF KQRKETAGFNVSRGGFGVGGGFGAAVSPSSRLLTSEPSSLMDIKSDDRCATPKSTENV VAGNISASRRGGFGNSPRTSEVMSPSKRSRTGRRTGRRGPRGPGHCFHCQEHGHISRE CPKKATETDDIDESGGAEGTETDRFVYQVAVNESPTQPPTPSAQSTLPSLTTRDAHLN AKLENQKQRESYYAGYGYGKTTTSTAATGGSGIGSLMNSSSNTGFESGGRSSGAIVGV VAVSGGGCGVAAGAGGGSIKSPEVDKFSEQLDNALKLHHVAESTPTQSPRGLTQMGKG GGGGESSRITSNKHQQHHETMPTKSDSLPGRDPIKDISSEMLTIETRRIVMREGECHL EETTIINFPRLLPPNVRVITAQFVPVTSPQGV" gene complement(<197968..>200158) /locus_tag="CAEBREN_18949" /db_xref="WormBase:WBGene00157674" mRNA complement(join(<197968..198151,198198..198278, 198323..198455,198502..198928,199108..199215, 199472..199712,199761..199858,200084..>200158)) /locus_tag="CAEBREN_18949" /product="hypothetical protein" /db_xref="WormBase:CBN18949" /db_xref="WormBase:WBGene00157674" CDS complement(join(197968..198151,198198..198278, 198323..198455,198502..198928,199108..199215, 199472..199712,199761..199858,200084..200158)) /locus_tag="CAEBREN_18949" /note="contains similarity to Pfam domain PF00149; contains similarity to Interpro domains IPR004843 (Metallo-dependent phosphatase), IPR006186 (Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39300.1" /db_xref="InterPro:IPR004843" /db_xref="InterPro:IPR006186" /db_xref="PFAM:PF00149" /db_xref="WormBase:CBN18949" /db_xref="WormBase:WBGene00157674" /translation="MIVRIEKFGTLEGFADSDIHEMLKTMKELLEPLPCLIEVVAPVI VFGDIHGQLSDLMEFTKEVGRPPDFQYLFLGDYVDRASKSLEVVVWLFCMKILYPKKV HLLRGNHEVRRVNALYGFREEMLRKRNGQLWKVFNDVFAELPICASINRKILCMHGGI SPKIESWLSLSEMSKPRIHGDCESGIYVDLMWSDPNRKEDKCQFNVHRGISSLFGKTA VEELCALLDIDMIIRAHELKNRGHEFEFDNRLLTVFSAPYYSGHNSNSGSVVAISQSL KVQIITLKPKKGADMMRLDKQTQHDFEKNFQPLDEDPLKTVTCKSNFPPANSSHTSPI LGAYSMFAHETKNCKKTNEAPLKPLVCVRPAEENTALATIRKTMKGYGMAFSLKDESM SLESIRRKLGMSDTKEKIQLVPPPPPPVKTPSHDPLGGPPPPPPTPPVSRSPPHHA" gene <203621..>204341 /locus_tag="CAEBREN_31950" /db_xref="WormBase:WBGene00193915" mRNA join(<203621..203681,204253..>204341) /locus_tag="CAEBREN_31950" /product="hypothetical protein" /db_xref="WormBase:CBN31950" /db_xref="WormBase:WBGene00193915" CDS join(203621..203681,204253..204341) /locus_tag="CAEBREN_31950" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39320.1" /db_xref="WormBase:CBN31950" /db_xref="WormBase:WBGene00193915" /translation="MISVSLVLLLLFGVRCFDSAGQLVNCFFQELSRKRIEYYSSDLR IELQI" gene <208008..>229979 /locus_tag="CAEBREN_29003" /db_xref="WormBase:WBGene00190968" mRNA join(<208008..208011,208969..209396,209503..209580, 209682..209922,210117..210274,212676..212786, 212827..213016,213264..213337,218773..219010, 219957..220057,220238..220392,220434..220653, 222119..222210,222264..222390,222609..222722, 223301..223400,223451..223609,223666..223864, 225392..225473,225803..225922,225973..226321, 228949..229022,229357..229644,229692..229817, 229896..>229979) /locus_tag="CAEBREN_29003" /product="hypothetical protein" /db_xref="WormBase:CBN29003" /db_xref="WormBase:WBGene00190968" CDS join(208008..208011,208969..209396,209503..209580, 209682..209922,210117..210274,212676..212786, 212827..213016,213264..213337,218773..219010, 219957..220057,220238..220392,220434..220653, 222119..222210,222264..222390,222609..222722, 223301..223400,223451..223609,223666..223864, 225392..225473,225803..225922,225973..226321, 228949..229022,229357..229644,229692..229817, 229896..229979) /locus_tag="CAEBREN_29003" /note="contains similarity to Pfam domain PF00041; contains similarity to Interpro domains IPR008957 (Fibronectin type III domain), IPR003961 (Fibronectin, type III), IPR013783 (Immunoglobulin-like fold)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39321.1" /db_xref="InterPro:IPR003961" /db_xref="InterPro:IPR008957" /db_xref="InterPro:IPR013783" /db_xref="PFAM:PF00041" /db_xref="WormBase:CBN29003" /db_xref="WormBase:WBGene00190968" /translation="MCQINDDSPLFIRTSIDASLNINITLEKKPYFTGSVTGYKLYFT KDQSQTIDEYENWNHQEVLSHENSYQFVLDSKKNGIVSGVVYRVRATVYFNNVESVPT GVITVNTRQAAPKPPLIVNTKILHNSSVLISFVPADDVNAIENYTLMYKQMEDEDWKS TNFQSDIDGKVLLDGLTPNQTYEIKMFVTGESIQGSPSNSAMFTTNSTALALVKTDPD EEYTADPQTNEPLSITCTVKSVSKASVLWKVNGIKVSVDSSFYTVVTSVHEDFIESTI RAKSRTRSAKFTCIATNDAGDSAKDVNVIIKGPGSPPSEITLVAEKRGYTISWKPPSH PNGEITKYVVYHTLNREDPLSDWRKIDLDGSEKLVRIIMDTEESFYGRVQAATELGPG IISDIVAMERDTQPISVESDLGGGPVAMTVVNPRELLSIHCTARGKPRPSISVAISDR KNASQVEVDVWNRLQATSSAGVVSAMHNFTVLTSKFVHCRAKNSAGSNYSTIELKVDK PGDAPTQIQVLSVNALDATVVWHSPQFPNLPITWNTELRIREKLDNPYPFSDFQSYIV LVSNDEKEDKSTWLQYESNAKETQINRMLLPTGSLEKSTEYFVCVRAKNAAGIGPTSS LTSFTTLNGGPDAPPDSLKVLINEANQVIVYWNTPNSTTEVTGYLIYYTRDLSLSNDD YKNWQFVEMNNNSTRYKFDLSVGLKPKTFYRVRIAGKNSHADGPPSDVVEFETAYSGF SEVPIPTDLKTEVQDDNTIHIKFNAVRDPDDHSKAIDEYRIDLAATDDVLHAPMEAYR TEIYQNRRDQFDDVEIDGDSVEKNRMYWVKVTARLDNPSWGMHSSKPRWFRTGHGSLF LFFIAVSKLMTSVTLEGSPLIEKEPNLYEKLSVNCTGTGSPAPIITWEWMNESIENGT EGWEVHNVQLDDTTVISKITRNNIRESGELTCLANNNEGNSSASVEIRVLGPGNPPEN IKLTAYRNQINVTWQESTLPNGDIMKYIVYYSENENDDLSDWNKFETAELETYVEAFG PSVSHFIRVQAVSDRGPGIISETHSCLSDVLCEFFVLQSRSHSELLANEPLEASSMEQ RKTLIGLFRGSKKQVGQSWSFFFQRKKLEYNLYLSNYKTKVSGPPVKIPDIPLAVNIS LRISAENEYGEGEKTFPISIPTPNGGPKTAPILSSLHAQDSKVYIFWAEPRLPNGEIQ NYTIFIRKETRRAEEVESEDDGEEQQEEWKKFVYGPNVTHVIIGTDEGLEENERYQMK MTASNERHEGPETKSRYHFEFPHFQQFETETVSVSETPLNM" assembly_gap 226781..228908 /estimated_length=2128 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 230249..241356 /estimated_length=11108 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 242660..242669 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<243939..>245160) /locus_tag="CAEBREN_09278" /db_xref="WormBase:WBGene00148003" mRNA complement(join(<243939..244080,244125..244685, 245093..>245160)) /locus_tag="CAEBREN_09278" /product="hypothetical protein" /db_xref="WormBase:CBN09278" /db_xref="WormBase:WBGene00148003" CDS complement(join(243939..244080,244125..244685, 245093..245160)) /locus_tag="CAEBREN_09278" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39293.1" /db_xref="WormBase:CBN09278" /db_xref="WormBase:WBGene00148003" /translation="MNPLPTIVQKKPVNAQADTKPLRWRPWGIEYIDKDYGPIQRMTQ NHINGLFHLSDIDLELCRENLKQGYYPDILNVTDILVTLDSVQSNTLHEILQMHPNVK SLKIREIDGVVPADSILFKIEEVALHGSFRFLPTFLDNFSGRRAYLSFPGISARDVIN CVIDWISGRRLHNLSMLYMGVGLNDSIVSFSLRPLAKNIVMPDTYEGSFRFIGCRRIG SHKWQGSDEQFLHFERETDQKIATLVYSESSSTLLVWD" assembly_gap 247953..255853 /estimated_length=7901 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<266213..>267629) /locus_tag="CAEBREN_02156" /db_xref="WormBase:WBGene00140881" mRNA complement(join(<266213..266452,266496..266783, 266845..266962,267006..267317,267367..267503, 267549..>267629)) /locus_tag="CAEBREN_02156" /product="hypothetical protein" /db_xref="WormBase:CBN02156" /db_xref="WormBase:WBGene00140881" CDS complement(join(266213..266452,266496..266783, 266845..266962,267006..267317,267367..267503, 267549..267629)) /locus_tag="CAEBREN_02156" /note="contains similarity to Interpro domain IPR007087 (Zinc finger, C2H2-type)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39311.1" /db_xref="InterPro:IPR007087" /db_xref="WormBase:CBN02156" /db_xref="WormBase:WBGene00140881" /translation="MNNAFNLSNLPKMHQNLLYGNLQVADEQIIYCETEYEEESGSIF HVEERNDVRCNIMEDYFSAEAMEAANQDHSICYYCKEDLRNKRFYNHLFDQHGFTKQQ CEMMKQQKRLETSKTKAKRKALHGCMECGMEFITRSGLNSHLSKKGTTCYQEVESEEG PSKINLIVCPAYACPAEFPTYLELAIHVDAFHRDYVTKYDAFMIRRANFTDKASFQAW KKEREEETNSEFFLRSSQKVSFAVRTVLYKCLCSNSRGLNKKKCEQCPAFIKVCQRRG GKFDVVACFGHLGHDHPTETTKAKENRLKAAEELNMYRNEGLIPQRPKLSHVTAPNHI VVNQYKNQEQYMNEMDILMPGEAMNEEDDDDEDEYQQVIVDDDASHQNVYYQSSSHY" gene <267905..>270010 /locus_tag="CAEBREN_25209" /db_xref="WormBase:WBGene00163934" mRNA join(<267905..267990,268041..268104,268147..268302, 268350..268467,268519..268661,269007..269434, 269481..269574,269621..>270010) /locus_tag="CAEBREN_25209" /product="hypothetical protein" /db_xref="WormBase:CBN25209" /db_xref="WormBase:WBGene00163934" CDS join(267905..267990,268041..268104,268147..268302, 268350..268467,268519..268661,269007..269434, 269481..269574,269621..270010) /locus_tag="CAEBREN_25209" /note="contains similarity to Interpro domains IPR012677 (Nucleotide-binding, alpha-beta plait), IPR000504 (RNA recognition motif, RNP-1)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39303.1" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR012677" /db_xref="WormBase:CBN25209" /db_xref="WormBase:WBGene00163934" /translation="MTEIDESVLLGEASETHDEPLDENVLLDEKDLKDEEVDDLYDVA LAPTTTEEIKVKEQVTTPNSVVTPTNTLMAKPAASSEGRKYCCYVGNLLWYTTDADLM KAIISTGLPRSQFADMKFFENRTNGQSKGYALLVLNSDSAVKQIMEQLPTKTIHGQSP TVLGYNKTNQAKLEEVMAKNQTRPDVKKKQTFDDGCVNMGTIRIGTAGNQAGRAGTNN TGRAGPPPLMMQQVRPTPLMSSQAPILQNQQQVPQMRLQINGQPVPMVNRAPVAQQGL MGTAPMGGMSQPMQQPQMMMGQQQVRPMMQPTLGVQPMMGVNMTAPPPMANQFQNRPP QLGMQPLMQMNTAMRPPVNGLPPVHINPQMFPGIQGPAVSDAEFEDVMTRNQTVSSSA MARALTDASVGDIKGASETILTAIALIKNSRIGHDDRCRQLVYGLEQTLKGLESKGYS SRSSKSHRDRSRSRERDRKRRRRSRTRSRSYSRSPSPRRRRY" gene 268751..268823 /locus_tag="CAEBREN_27220" /pseudo /db_xref="WormBase:WBGene00187831" tRNA 268751..268823 /locus_tag="CAEBREN_27220" /product="tRNA-OTHER" /pseudo /db_xref="WormBase:CBN27220" /db_xref="WormBase:WBGene00187831" gene <271794..>272913 /locus_tag="CAEBREN_24465" /db_xref="WormBase:WBGene00163190" mRNA join(<271794..271951,272215..272734,272782..>272913) /locus_tag="CAEBREN_24465" /product="hypothetical protein" /db_xref="WormBase:CBN24465" /db_xref="WormBase:WBGene00163190" CDS join(271794..271951,272215..272734,272782..272913) /locus_tag="CAEBREN_24465" /note="contains similarity to Pfam domain PF00153; contains similarity to Interpro domains IPR018108 (Mitochondrial substrate/solute carrier), IPR001993 (Mitochondrial substrate carrier)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39299.1" /db_xref="InterPro:IPR001993" /db_xref="InterPro:IPR018108" /db_xref="PFAM:PF00153" /db_xref="WormBase:CBN24465" /db_xref="WormBase:WBGene00163190" /translation="MPSEDGSVVRWLVCGATAGLAVDIGLYPLDTIKSRMQSKQGFIA AGGFKDIYRGMSSVLVGSAPGAAIFFLTYKYINTQMKKSIKGRDSLLDALSASLAEIA ACAVRVPTELCKQRGQVNKNTRLTLICKEIMETKGLKGFYQGYGSTVAREIPFSIIQF PIWEALKRMVAEKKESGRCSPIEGAACGSVAGCIAAGLTTPLDVAKTRIMLTKTGPAP GILSTLKEVYTSGGIGGLYSGVVPRVMWISGGGFVFFGAYETAMHFTKFLD" gene <275818..>282636 /locus_tag="CAEBREN_11754" /db_xref="WormBase:WBGene00150479" mRNA join(<275818..275843,276927..277129,277225..277373, 278330..278557,278763..278890,278938..279028, 280859..281014,281059..281201,281427..281525, 281573..281689,282235..282424,282469..>282636) /locus_tag="CAEBREN_11754" /product="hypothetical protein" /db_xref="WormBase:CBN11754" /db_xref="WormBase:WBGene00150479" CDS join(275818..275843,276927..277129,277225..277373, 278330..278557,278763..278890,278938..279028, 280859..281014,281059..281201,281427..281525, 281573..281689,282235..282424,282469..282636) /locus_tag="CAEBREN_11754" /note="contains similarity to Pfam domain PF07690; contains similarity to Interpro domain IPR011701 (Major facilitator superfamily MFS-1)" /codon_start=1 /product="hypothetical protein" /protein_id="EGT39307.1" /db_xref="InterPro:IPR011701" /db_xref="PFAM:PF07690" /db_xref="WormBase:CBN11754" /db_xref="WormBase:WBGene00150479" /translation="MITADKLKTPFFSATRCSTDFVPAYKSFLHRTRFLLLLLVILLN AIVYSNTILINFAVICMSESNLELMLNGDHNDYEVVREAVASSMNDFRSSWFTFNGLE RSIIFMMAPLGALVMIYPTWMLIMKHGYRRVCSVACLISTFLTAFLPWSIFFGFPYVL FVQFLLGASAPSALLLVPSVIRKWSTRKNDHFCFLVLSTFQQISPSSIYPIAAYISKS FFGWPVIFYFQSILSFMVTILFFYFYKETPVRHANVSDNELEKIQRGESVRGNIDYKK MFLCPQFQSVCFSIFIYFLPISFFIQYLPSYLYDIMDQSLEKTAWTISLIMMVHLVLK VFISRIFEKNSALTSIYSIKFLSLASFVGSAVIMITLFVTKFQFEIQLILYVAIFAFL SLSWPSIFKSSNIISNKYYLPVIVRTHIILFYFSSLMSNILPLIFGRKDSWDSWRYIW LVLSILLISSVIFFWLTFRFEKSDWDVYIPPEPPQPVRAEDIAPVSHPRPCRFTTSFD DEIVVSIISRGLDRCDTCKKHGIDARVHPKDENEIIPTRKMYDELVQGQQDVSITRF" assembly_gap 306399..306435 /estimated_length=37 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 307574..308573 /estimated_length=1000 /gap_type="within scaffold" /linkage_evidence="unspecified" CONTIG join(ABEG02004682.1:1..15144,gap(10),ABEG02004683.1:1..22992, gap(585),ABEG02004684.1:1..445,gap(7627),ABEG02004685.1:1..6959, gap(1162),ABEG02004686.1:1..835,gap(232),ABEG02004687.1:1..31931, gap(10),ABEG02004688.1:1..5378,gap(10),ABEG02004689.1:1..2196, gap(10),ABEG02004690.1:1..77884,gap(698),ABEG02004691.1:1..7727, gap(10),ABEG02004692.1:1..9947,gap(1166),ABEG02004693.1:1..33822, gap(2128),ABEG02004694.1:1..1340,gap(11108),ABEG02004695.1:1..1303, gap(10),ABEG02004696.1:1..5283,gap(7901),ABEG02004697.1:1..50545, gap(37),ABEG02004698.1:1..1138,gap(1000),ABEG02004699.1:1..7315) //