LOCUS GL193062 1019262 bp DNA linear CON 24-JUL-2016 DEFINITION Ailuropoda melanoleuca unplaced genomic scaffold scaffold1429, whole genome shotgun sequence. ACCESSION GL193062 ACTA01000000 VERSION GL193062.1 DBLINK BioProject: PRJNA38683 BioSample: SAMN00008160 KEYWORDS WGS. SOURCE Ailuropoda melanoleuca (giant panda) ORGANISM Ailuropoda melanoleuca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda. REFERENCE 1 (bases 1 to 1019262) AUTHORS Li,R., Fan,W., Tian,G., Zhu,H., He,L., Cai,J., Huang,Q., Cai,Q., Li,B., Bai,Y., Zhang,Z., Zhang,Y., Wang,W., Li,J., Wei,F., Li,H., Jian,M., Li,J., Zhang,Z., Nielsen,R., Li,D., Gu,W., Yang,Z., Xuan,Z., Ryder,O.A., Leung,F.C., Zhou,Y., Cao,J., Sun,X., Fu,Y., Fang,X., Guo,X., Wang,B., Hou,R., Shen,F., Mu,B., Ni,P., Lin,R., Qian,W., Wang,G., Yu,C., Nie,W., Wang,J., Wu,Z., Liang,H., Min,J., Wu,Q., Cheng,S., Ruan,J., Wang,M., Shi,Z., Wen,M., Liu,B., Ren,X., Zheng,H., Dong,D., Cook,K., Shan,G., Zhang,H., Kosiol,C., Xie,X., Lu,Z., Zheng,H., Li,Y., Steiner,C.C., Lam,T.T., Lin,S., Zhang,Q., Li,G., Tian,J., Gong,T., Liu,H., Zhang,D., Fang,L., Ye,C., Zhang,J., Hu,W., Xu,A., Ren,Y., Zhang,G., Bruford,M.W., Li,Q., Ma,L., Guo,Y., An,N., Hu,Y., Zheng,Y., Shi,Y., Li,Z., Liu,Q., Chen,Y., Zhao,J., Qu,N., Zhao,S., Tian,F., Wang,X., Wang,H., Xu,L., Liu,X., Vinar,T., Wang,Y., Lam,T.W., Yiu,S.M., Liu,S., Zhang,H., Li,D., Huang,Y., Wang,X., Yang,G., Jiang,Z., Wang,J., Qin,N., Li,L., Li,J., Bolund,L., Kristiansen,K., Wong,G.K., Olson,M., Zhang,X., Li,S., Yang,H., Wang,J. and Wang,J. TITLE The sequence and de novo assembly of the giant panda genome JOURNAL Nature 463 (7279), 311-317 (2010) PUBMED 20010809 REFERENCE 2 (bases 1 to 1019262) AUTHORS Wang,J., Li,R., Fan,W., Tian,G., Zhu,H., Huang,Q. and Li,J. TITLE Direct Submission JOURNAL Submitted (09-JUL-2009) Sequencing and Bioinformatics, Beijing Genomics Institute at Shenzhen, Beishan industry zone, Yantian district, Shenzhen, Guangdong 518000, China COMMENT Assembly Method: SOAPdenovo Assembly Name: AilMel_1.0 Genome Coverage: 60x Sequencing Technology: Illumina GA. FEATURES Location/Qualifiers source 1..1019262 /organism="Ailuropoda melanoleuca" /mol_type="genomic DNA" /submitter_seqid="scaffold1429" /db_xref="taxon:9646" /chromosome="Unknown" /sex="female" /geo_loc_name="China: Chengdu province" gene complement(<6554..>17549) /locus_tag="PANDA_012969" mRNA complement(join(<6554..6716,6870..7026,7455..7570, 8232..8353,8714..9139,9585..9731,10689..10876, 11334..11523,12545..12653,13100..13215,13305..13399, 14318..14468,15017..15132,15385..15568,16403..16506, 16646..16805,17421..>17549)) /locus_tag="PANDA_012969" /product="hypothetical protein" CDS complement(join(<6554..6716,6870..7026,7455..7570, 8232..8353,8714..9139,9585..9731,10689..10876, 11334..11523,12545..12653,13100..13215,13305..13399, 14318..14468,15017..15132,15385..15568,16403..16506, 16646..16805,17421..>17549)) /locus_tag="PANDA_012969" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15607.1" /db_xref="UniProtKB/Swiss-Prot:Q8TBZ2" /db_xref="UniProtKB/TrEMBL:Q658Z8" /translation="EKKRAKVAEQLTPPIQEEPEPVSNVLQGDDILALAIKKENLKKQ HIPRFIETQARPAITQKFIVRKLKPKDPKRKVCHLVARPATPDAATKPLDYSGPGDSF HGCDQILPHHILGSLQDFKRIAVAQGNTQLAELIRSPPGLVTLISAKEEPKQKVPKEK KPHPWAPPPQHNFLKNWQRHIALRKKQQEALSEHLKKPVSELLMHTGETYRQIQEERE LIDRILPTQHDGKCREETSGFWSRLEYLGDELTGLVMTKTKAQRGLLEPITHVRKPQC IQAEMGGPRHTWDRSLFLIYRRMELQRLLAELDFSQQDIDGLEVVGRGQPFTSVKVED DSVFDRSQESSSEDTVSLDFASYPDVVPVPILGPSLLFCGKPACWIRGSNPQDKKHVG IAVRLTFETLEGEKTSSELTVVNNGTVAIWYDWRRRSQLDSFQGLKRNRMPRFYFNNR EGVILPGETKTFTFFFKSLQAGIFREYWEFGTHPTLLGGAPLQVNLYAVSLTQDIFRE ERKLLKRKLAAHEAVTIVESVLQELLSGILTPERAQSPVDAYLTEEDLFHHQNPRLHY QYQVVESLHGLWRQYLVLTPKAQEARPSEEEHLSPRTRAAATPPASSEKPSMIREPSA HFKSPISESQLSRPENETLRDSRDAFGSQKPGAGARVSQGKSIMEEILVEGSPDPWNT KSPWELDGLPPPEWNLCLEDFRKAVMALPEESQREDALVRLNKAALELCQEQRPLQSD FLHQVCLQLWRDVIDGLVSHSLWLRALLGLPEKETVYLDIPEEQDRKSPPGTEVKITT TKFGKEDRKGAAQEKKQLGIKEDKKAAKLPGKEACRDIGKKHKAKDDKKPTKSSSRDR LSLEDPAPDSTTPSQEPIDPLVMEKYTRGLQTEVR" assembly_gap 23425..23515 /estimated_length=91 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 30289..30297 /estimated_length=9 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 40582..40623 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 42410..43509 /estimated_length=1100 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<43731..>48181) /locus_tag="PANDA_012970" mRNA complement(join(<43731..43785,43955..44102,44735..44798, 44958..45323,47673..47877,47994..>48181)) /locus_tag="PANDA_012970" /product="hypothetical protein" CDS complement(join(<43731..43785,43955..44102,44735..44798, 44958..45323,47673..47877,47994..>48181)) /locus_tag="PANDA_012970" /note="GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004109 - coproporphyrinogen oxidase activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_process: GO:0006779 - porphyrin biosynthetic process [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15608.1" /db_xref="InterPro:IPR006638" /db_xref="InterPro:IPR007197" /db_xref="InterPro:IPR010723" /db_xref="UniProtKB/Swiss-Prot:A5D7B1" /db_xref="UniProtKB/TrEMBL:B2RTE1" /translation="GPGPLDRPSPRLSTPAPQWPYCEKRCSYCNFNKYIPRGVEEAAM RSCLVTEAQTLLRLSGVQRVESVFFGGGTPSLASPNTVAAVLEAVDQISHLPADSEVT LEANPTSASGSKLAAFGAAGVNRLSIGLQSLDDTELRLLGRTHSASDALQTLAEARRL FPGRVSVDLMLGLPAQQVGPWLGQLQTLLGCCDDHLSLYQLTLERGTALFTQVQRGTL PAPDPELTAEMYQEGRAVLREAGFRQYEVSNFARNGALSTHNWTYWQCGQYLGIGPGA HGRFVLQGAGGHTREARIQTLEPDNWMKEVMLFGHSTRRRVPLGQLELLEEVLAMGLR TDVGITHQ" assembly_gap 48468..48469 /estimated_length=2 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 48565..48686 /estimated_length=122 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 55065..55561 /estimated_length=497 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 55632..>58772 /locus_tag="PANDA_012971" mRNA join(55632..56405,58204..58367,58634..>58772) /locus_tag="PANDA_012971" /product="hypothetical protein" CDS join(55632..56405,58204..58367,58634..>58772) /locus_tag="PANDA_012971" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15609.1" /db_xref="InterPro:IPR000372" /db_xref="InterPro:IPR000483" /db_xref="InterPro:IPR001611" /db_xref="InterPro:IPR003591" /db_xref="UniProtKB/Swiss-Prot:O15335" /db_xref="UniProtKB/TrEMBL:A8K812" /translation="MARPLLWLSLGLLAGLLPALAACPQNCHCHGDLQHVICDKVGLQ KIPKVSEKTKLLNLQRNNFPVLAANSFRAMPNLVSLHLQHCQIREVAAGAFRGLKQLI YLYLSHNDIRVLHAGAFDDLTELTYLYLDHNKVTELPRGLLSPLVNLFILQLNNNKIR ELRAGAFQGAKDLRWLYLSENALTSLQPGALDDVENLAKFHLDKNQLSSYPAAALSKL RVVEELKLSHNPLKSIPDNAFQSFGRYLETLWLDNTNLEKLSDGAFLGVTTLKHVHLE NNRLSQLPSNFPFDSLETLTLTNNPWKCTCQLRGLRRWLEAKTSRPDATCASPAKFKG QHIRDTDAFRGCKFPTKRSKKAGRH" gene complement(59757..83344) /locus_tag="PANDA_012972" mRNA complement(join(59757..59917,60202..60293,60585..60742, 60862..60957,61531..61696,61813..61931,62165..62218, 62468..62596,62976..63171,82683..82750,83222..83344)) /locus_tag="PANDA_012972" /product="hypothetical protein" CDS complement(join(59757..59917,60202..60293,60585..60742, 60862..60957,61531..61696,61813..61931,62165..62218, 62468..62596,62976..63171,82683..82750,83222..83344)) /locus_tag="PANDA_012972" /note="GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15610.1" /db_xref="InterPro:IPR000873" /db_xref="UniProtKB/Swiss-Prot:Q96CM8" /db_xref="UniProtKB/TrEMBL:A7RFX5" /translation="MAIYIGMLRLARLCARSPGGDPRRPRPGLAGNEIAGRPPPQVLR NTAFVPCYLLGLFPCPQCKSSREADNTVPLPIGGLSYVQGLTKHSLIHKTVGQCLEGT AQRVPDREALVVPQENIRLTFAQLKEEVDKAASGLLSIGLGKGDRLGMWGPNSYAWVL MQLATAQAGIILVSVNPAYQAMELEYALKKVGCKALVFPKQFKSQQYYNILKQICPEL EKAQPGALKSQRLPDLTTLISVDHPLPGTLLLDEVVATGSKKQHLAQLRYTQQFLSCH DPVNIQFTSGTTGNPKGATLSHYNIVNNSNLIGDRLRLRLKMPEELRMVLPSPLYHCL GSVAGTMVCLIYGATLILASPTFDGKKALEAISKERGSFVYGTPTMFVDILNQPDFSS YDISAMRGGVIAGSPAPPELIRAIIDKLNMKELVVSGRRLGWGCGQGAGQAGVRTDWW VWG" assembly_gap 70038..70057 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 80034..80198 /estimated_length=165 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 83376..83388 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 83496..83558 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 83685..83765 /estimated_length=81 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 84196..84236 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 86510..86532 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 87624..87712 /estimated_length=89 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 94575..105342 /locus_tag="PANDA_012973" /pseudo CDS join(94575..94679,95815..95874,97473..97631,97860..97964, 101199..101271,103314..103487,105112..105164, 105166..105342) /locus_tag="PANDA_012973" /note="similar to Q5E9X4; contains short intron which is an attempt to correct a frameshift in the coding region" /pseudo /codon_start=1 gene complement(<107335..112416) /locus_tag="PANDA_012974" mRNA complement(join(<107335..107508,107739..107928, 108681..108796,109032..109194,109334..109455, 109548..109637,111417..111544,111633..112416)) /locus_tag="PANDA_012974" /product="hypothetical protein" CDS complement(join(<107335..107508,107739..107928, 108681..108796,109032..109194,109334..109455, 109548..109637,111417..111544,111633..112416)) /locus_tag="PANDA_012974" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15611.1" /db_xref="UniProtKB/Swiss-Prot:Q5NVA9" /db_xref="UniProtKB/TrEMBL:A6QQB5" /translation="MALKKSSLSRGSSESDSEELPTFTFLKKEPSSTKRGQPQREEKI VVVVTSDSEASCPPSPRLKAVPPIPDTAEPVTQTEPVRVLSSESEDGEELMPLAERLT CKFLTRKQLSPEDSSSPVTNVWDHQNSEGASCDWKKQLFPKVTDLPLHDTSERHASNN KDPAGDNPYHQLPAFKATCPVQDSSWTVTRTNVEVLPFQKRTRHSQKFQRGGSQGCQP RRQASQERALRQQERMKKTALVNRLKAQRPEECLKHVIVGLDPVLLQTEGGGQLLGAL QSMECRCVIEAQAVPCSITWRRRAGAAEDGQEDWVEEPMVLVLLPAEAFVSMVQNFRQ GSLGSSEKGRETLRSFVTDATARAAGKALSLVIVDQEKCFSLELLLSGFLPCSRAPNP PRRRKQGVADRGQAKEKQQRQPEAIAGHVVSRVDVEEALVDLQLYTQAQARVVRSWKE LADFACAFTKAVAEAPFKKLRDQTSFSFCLESDWAGGAKVDRAGRGLALVWRRQIQQL NRVSLDMASAIVDTYPSPQLLVQAYRRCLSEQERQNLLADIQVRRGEGVTATSRRVGP ELSRRIYLQMTTQQPDLSLDSAD" gene <115873..>118771 /locus_tag="PANDA_012975" mRNA join(<115873..116038,116489..116556,118568..>118771) /locus_tag="PANDA_012975" /product="hypothetical protein" CDS join(<115873..116038,116489..116556,118568..>118771) /locus_tag="PANDA_012975" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15612.1" /db_xref="InterPro:IPR001684" /db_xref="UniProtKB/Swiss-Prot:Q32PC3" /db_xref="UniProtKB/TrEMBL:B2RE14" /translation="ASLNNISVLSAVTALLSPPQAASLAVRYASKKTGGSSKNLGGKS PGKRFGLKKMEGHYVHAGNIIATQRHFRWHPGAHVGLGKKKYLYALEEGVVHYTKEVY VPSPSNAEAVDLVTRLPQGAVLYKTFVHVVPAKPEGTFRLVAML" gene complement(125088..131572) /locus_tag="PANDA_012976" /pseudo CDS complement(join(125088..125407,126826..127159, 127768..127963,128251..128513,128777..128953, 129077..129293,129546..129626,130024..130226, 130435..130610,131091..131406,131408..131572)) /locus_tag="PANDA_012976" /note="similar to Q5QQ50; contains short intron which is an attempt to correct a frameshift in the coding region" /pseudo /codon_start=1 assembly_gap 130860..131020 /estimated_length=161 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 134831..134934 /estimated_length=104 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 137750..138276 /estimated_length=527 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 146752..146907 /estimated_length=156 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 150301..150309 /estimated_length=9 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 166538..166642 /estimated_length=105 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 182479..182482 /estimated_length=4 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 185062..185071 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 186158..191398 /estimated_length=5241 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<199282..>199982) /locus_tag="PANDA_012977" mRNA complement(join(<199282..199386,199609..199804, 199912..>199982)) /locus_tag="PANDA_012977" /product="hypothetical protein" CDS complement(join(<199282..199386,199609..199804, 199912..>199982)) /locus_tag="PANDA_012977" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15613.1" /db_xref="UniProtKB/Swiss-Prot:Q6UXU6" /db_xref="UniProtKB/TrEMBL:A4IFP4" /translation="CPKGFKCCGDSCCQEYELFSGPLRVFVITVLIILPLLCICGLAK RFCRSCGEQEQDPPVDHQGLPEPPSIVPPERVRTPTFEPPPPYSEIILKPVLPPMEPP PPYSFSPEEYTQVRRGVDNPAF" assembly_gap 204327..204482 /estimated_length=156 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 215750..215751 /estimated_length=2 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(222899..222968) /locus_tag="PANDA_012978" ncRNA complement(222899..222968) /ncRNA_class="snoRNA" /locus_tag="PANDA_012978" /product="Small nucleolar RNA U2-30" gene complement(223108..223186) /locus_tag="PANDA_012979" ncRNA complement(223108..223186) /ncRNA_class="snoRNA" /locus_tag="PANDA_012979" /product="Small nucleolar RNA U2-19" assembly_gap 239454..239639 /estimated_length=186 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 246704..246715 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 260554..260695 /estimated_length=142 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 260859..260868 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 261485..261691 /estimated_length=207 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <261828..>276171 /locus_tag="PANDA_012980" mRNA join(<261828..262023,262107..262141,262248..262283, 262379..262480,263284..263355,263613..263657, 264050..264103,264299..264352,264874..264927, 265048..265101,265430..265483,265576..265620, 265738..265791,265907..265951,266114..266167, 266406..266504,266600..266644,266740..266838, 266973..267026,267136..267243,267324..267377, 267652..267750,267918..267971,268060..268158, 268743..268796,269022..269075,269180..269233, 269338..269391,269853..269897,269990..270088, 270351..270458,270898..271005,271208..271261, 271431..271484,271728..271835,271923..271976, 272096..272159,272241..272422,272508..272615, 272775..272882,272990..273043,273151..273258, 273624..273677,273792..273899,274197..274250, 274541..274648,274741..275023,275161..275351, 275667..275909,276028..>276171) /locus_tag="PANDA_012980" /product="hypothetical protein" CDS join(<261828..262023,262107..262141,262248..262283, 262379..262480,263284..263355,263613..263657, 264050..264103,264299..264352,264874..264927, 265048..265101,265430..265483,265576..265620, 265738..265791,265907..265951,266114..266167, 266406..266504,266600..266644,266740..266838, 266973..267026,267136..267243,267324..267377, 267652..267750,267918..267971,268060..268158, 268743..268796,269022..269075,269180..269233, 269338..269391,269853..269897,269990..270088, 270351..270458,270898..271005,271208..271261, 271431..271484,271728..271835,271923..271976, 272096..272159,272241..272422,272508..272615, 272775..272882,272990..273043,273151..273258, 273624..273677,273792..273899,274197..274250, 274541..274648,274741..275023,275161..275351, 275667..275909,276028..>276171) /locus_tag="PANDA_012980" /note="GO_component: GO:0005581 - collagen [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_function: GO:0005201 - extracellular matrix structural constituent [Evidence IEA]; GO_process: GO:0006817 - phosphate transport [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15614.1" /db_xref="InterPro:IPR000885" /db_xref="InterPro:IPR001007" /db_xref="InterPro:IPR008160" /db_xref="InterPro:IPR008161" /db_xref="UniProtKB/Swiss-Prot:Q9XSJ7" /db_xref="UniProtKB/TrEMBL:A3KNA1" /translation="VPPVTCVQNGLRYYDRDVWKPEACRICVCDNGNVLCDDVICDET KNCPGAQVPPGECCPVCPDGEASPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPG QPGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEKSTGGISVPGPMGPSGPRGLPGPPG APGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGA RGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGER GRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGARGSEGPQG VRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGP PGPKGNSGEPGAPGNKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPTGLPGPP GERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG SPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGV PGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKP GEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPG APGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGP AGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDA GAKGDAGPPGPAGPTGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSV DAAPLLPAQGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPG ADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGP PGPMGPPGLAGPPGESGREGSPGAEGSPGRDGSPGPKGDRGETGPAGPPGAPGAPGAP GPVGPAGKSGDRGETGPAGPAGPIGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRG FSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGR TGDAGPVGPPGPPGPPGPPGPPSGGFDFSFLPQPPQEKAHDGGRYYRADDANVVRDRD LEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDA IKVFCNMETGETCVYPTQPHVAQKNWYISKNPKEKRHVWYGESMTDGFQFEYGGQGSD PADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEG NSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGMDVGP VCFL" gene complement(<285340..>293642) /locus_tag="PANDA_012981" mRNA complement(join(<285340..285517,290552..290578, 290776..290984,291917..292079,292490..292688, 293038..293110,293269..293423,293525..>293642)) /locus_tag="PANDA_012981" /product="hypothetical protein" CDS complement(join(<285340..285517,290552..290578, 290776..290984,291917..292079,292490..292688, 293038..293110,293269..293423,293525..>293642)) /locus_tag="PANDA_012981" /note="GO_component: GO:0016012 - sarcoglycan complex [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15615.1" /db_xref="InterPro:IPR006644" /db_xref="InterPro:IPR008908" /db_xref="UniProtKB/Swiss-Prot:Q16586" /db_xref="UniProtKB/TrEMBL:Q0V8C6" /translation="LLAGLGDAEAQETTLQPLVGRVFVHTLDQETVLRGPEHADVPPT APVTYHAHLQGHPDLPRWLRYTQRSPRQPGFLYGTPTPEDRGRQVIEVTTYNRDRFDT TRQRLVLLIGDPEGPLLPYQAEFLVCSHDVEEVLPSTPASRFLTALRGLWEPGELQLL NITSALDRGGRVPLPIEGRKEGVYIKVGSASPFSTCLKMVASPDSHARCAQGQPPLLS CYDTLAPHFRVDWCNVSLVDKSVPEPADEVPTPGDGILEHDPFFCPPTEATARDFLTD ALVTLLVPLLVALLLTVLLAYVMCCRREGRLKRDLATSDIQMVHHCTIRGNTEELRQM ASSREVPRPLSTLPMFNVRTGERLPPQVDSAQVPLILDQH" assembly_gap 287089..287112 /estimated_length=24 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 294041..294074 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 295183..295199 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 296240..296329 /estimated_length=90 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 303227..303336 /estimated_length=110 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 308193..308327 /estimated_length=135 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 308659..308772 /estimated_length=114 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 308872..309138 /estimated_length=267 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 309140..322756 /locus_tag="PANDA_012982" /pseudo CDS join(309140..309340,309343..309898,313753..313899, 315160..315280,317131..317235,318300..318435, 319061..319213,319325..319378,321891..322120, 322448..322544,322706..322756) /locus_tag="PANDA_012982" /note="similar to Q96SB3; contains short intron which is an attempt to correct a frameshift in the coding region" /pseudo /codon_start=1 assembly_gap 309345..309347 /estimated_length=3 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 320464..320502 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 324044..324093 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 327353..327608 /estimated_length=256 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 328027..328042 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 328142..328197 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <336580..>341334 /locus_tag="PANDA_012983" mRNA join(<336580..336747,337227..337512,338263..338350, 338444..338518,338623..338782,339838..339897, 339969..340088,340173..340328,341182..>341334) /locus_tag="PANDA_012983" /product="hypothetical protein" CDS join(<336580..336747,337227..337512,338263..338350, 338444..338518,338623..338782,339838..339897, 339969..340088,340173..340328,341182..>341334) /locus_tag="PANDA_012983" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15616.1" /db_xref="InterPro:IPR001660" /db_xref="UniProtKB/Swiss-Prot:Q8IZD0" /db_xref="UniProtKB/TrEMBL:A6QL51" /translation="DLDLAVPETVRLDSSLHKARAQLLAKGRRHRPSRSRLRDSASSA EDGEGSDGPGGKVTDGCGSPLHRLRSPLHSGPGSPAGGSFCLEPPGLRRSLDEDEPPP SPLTRYRPLHNAAXXXXXXXXXXPPRSAPSSDSSPSFVRRHPRAEPHSEDDSRDASPP EPASPTIGLDKKTRRKFLDLGVTLRRASTSKSRKDKGSNRLSMGSRESVEGSGRSGGS PFLPFSWFTDSGKGSASSGSTTSPACSPKHEGFSPKKSASQEALSYSWCPVASFSSIQ MRAESTLSDDSTPPSSSPKIPSGPRQETKCSYPYHTLSQSSDEFLDEPLPTVHHWTSQ QVGQWLHSLNLEQYAAEFAARQVDGPQLLQLDGSKLKSLGLSNSHDRTLVKRKVKELA AAAEKERKAQEKAARQREKLRRREQEAKKS" assembly_gap 337405..337433 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 337541..337574 /estimated_length=34 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 343237..343255 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<344159..358866) /locus_tag="PANDA_012984" mRNA complement(join(<344159..344296,344885..344998, 345539..345646,345807..345905,345999..346075, 348190..348267,348476..348565,349082..349266, 349647..349718,356713..356854,358749..358866)) /locus_tag="PANDA_012984" /product="hypothetical protein" CDS complement(join(<344159..344296,344885..344998, 345539..345646,345807..345905,345999..346075, 348190..348267,348476..348565,349082..349266, 349647..349718,356713..356854,358749..358866)) /locus_tag="PANDA_012984" /note="GO_function: GO:0000155 - two-component sensor activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0018106 - peptidyl-histidine phosphorylation [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15617.1" /db_xref="InterPro:IPR003594" /db_xref="InterPro:IPR005467" /db_xref="UniProtKB/Swiss-Prot:Q15119" /db_xref="UniProtKB/TrEMBL:Q4R567" /translation="MRWVCALLKNASLAGAPKYIEHFSKFSPSPLSIKQFLDFGSSNA CEKTSFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKD PEDHRNLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYL SRISIRMLINQHTLIFDGSTNPAHPKHIGSIDPNCNVSEVVKDAYDTAKLLCDKHYMA SPDLEIQEINTSNSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLVLPPIKVM VALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISR LYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLPVYNKSAWRHYQTIQEAGDWC VPSTEPKNTSTYRVS" assembly_gap 358705..358720 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 358872..359003 /estimated_length=132 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<364957..>383837) /locus_tag="PANDA_012985" mRNA complement(join(<364957..365109,366363..366488, 369064..369162,370123..370236,370980..371102, 371307..371489,371633..371735,372264..372341, 372452..372531,373363..373431,373711..373858, 374170..374267,374365..374514,375126..375262, 375335..375402,376511..376597,376753..376889, 377017..377105,378752..378948,379376..379583, 379967..380053,381313..381562,383313..383392, 383711..>383837)) /locus_tag="PANDA_012985" /product="hypothetical protein" CDS complement(join(<364957..365109,366363..366488, 369064..369162,370123..370236,370980..371102, 371307..371489,371633..371735,372264..372341, 372452..372531,373363..373431,373711..373858, 374170..374267,374365..374514,375126..375262, 375335..375402,376511..376597,376753..376889, 377017..377105,378752..378948,379376..379583, 379967..380053,381313..381562,383313..383392, 383711..>383837)) /locus_tag="PANDA_012985" /note="GO_component: GO:0008305 - integrin complex [Evidence IEA]; GO_process: GO:0007155 - cell adhesion [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15618.1" /db_xref="InterPro:IPR000413" /db_xref="InterPro:IPR013517" /db_xref="InterPro:IPR013519" /db_xref="InterPro:IPR013649" /db_xref="UniProtKB/Swiss-Prot:P17852" /db_xref="UniProtKB/TrEMBL:Q6P6I1" /translation="LLAGAPRDLAVPDGYTNRTGAVYLCPLTAHKNDCERMDISEKSD PDHHIIEDMWLGVTVASQGPAGRVLVCAHRYTQVLWSGSEDQRRMVGKCYVRGNDLEL DPTDDWQTYHNEMCNSNTDYLATGMCQLGTSGGFTHNTVYFGAPGAYNWQGNSYMIQR KDWDLSEYSYKDSEKQGNLYIGYTVQVGSAVLHPTNITIVTGAPRHRHMGAVFLLSQE AGGDLRKRQVLEGTQVGAYFGSAIALADLNNDGWQDLLVGAPYYFERKEEVGGALYVF MNQAGTSFPAHPSLLLHGPSRSAFGFSVASIGDINQDGFQDVAVGAPFEGLGKVYVYH SSSRGLLGRPQQVIHGEELGLPGLATFGYSLSGQMDVDENSYPDLLVGSLSDRIVLLR ARPVINILYKTLVARPSVLDPALCTATSCVQVELCFAYNQSAGNPNYRRNITLAYTLE ADRDRRPPRLRFARSQSAVFHGFFSMPDMRCQKLELLLMDNVRDKLRPIIISMNYSLP LRMPERPRLGLRSLDPYPVLNQAQVLENHTEVHFQKECGQDNKCDSNLQMRAAFLSEL GQPLSRLQYSRDGRKLLLSIDVTNTPSRERAGEDAHEALLTLTVPPALLLSSVRPAGT CQANETIVCELGNPFKRNQRMELLIAFEVTGVTLHTRELQAQLQLSTSSHQDNLWPVT LTLLVDYTLQASLSIVNHRLQSFFGGTVMGESGMKTVEDVGSPLKYEFQVGPVGEGLA ALGTLVLGLEWPYEVINGKWLLYPAEITIHGNGSWPCRPPGDLVNPLNLTLSVPGDRP PSPQRRRRQLDPGGGPAPPPVTLAAAKKAKSETKLKCGSDQARCVWLECPIPDTPVIT NVTVQARVWNSTFIEDYRDFDRVSVSGWATLFLRTSIPTINMENKTVWFSVDIDSDLV EELPAEIELWLVLVAVSAGLLLLGLIILLLWKCDFFKRTRYYQIMPKYHAVRIREEER YPPPGSTVPPKKHWVTSWQTRDRYY" assembly_gap 384601..384608 /estimated_length=8 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 391323..391348 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 391442..391879 /estimated_length=438 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 391935..391936 /estimated_length=2 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 392031..392073 /estimated_length=43 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 429379..>432717 /locus_tag="PANDA_012986" mRNA join(429379..429703,430605..430792,432373..>432717) /locus_tag="PANDA_012986" /product="hypothetical protein" CDS join(429379..429703,430605..430792,432373..>432717) /locus_tag="PANDA_012986" /note="GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003700 - transcription factor activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15619.1" /db_xref="InterPro:IPR000047" /db_xref="InterPro:IPR001356" /db_xref="UniProtKB/Swiss-Prot:O60479" /db_xref="UniProtKB/TrEMBL:B3KQL6" /translation="MSGSFDRKLSSILTDISSSLSCHAGSKDSPTLPESSVTDLGYYS APQHDYYSGQPYGQTVNPYTYHHQFNLNGLAGTGAYSPKSEYTYGASYRQYGAYREQP LPAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTYSSYQLAALQRRFQKAQYLALPERAE LAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTA SHATPAPARSQLPPPLPYSASPSYLDDPTNSWYHAQNLSGPHLQQQPPQPAALHHASP GPPPNPGAVY" assembly_gap 430836..430844 /estimated_length=9 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<448649..453136) /locus_tag="PANDA_012987" mRNA complement(join(<448649..448888,449299..449495, 452881..453136)) /locus_tag="PANDA_012987" /product="hypothetical protein" CDS complement(join(<448649..448888,449299..449495, 452881..453136)) /locus_tag="PANDA_012987" /note="GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003700 - transcription factor activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15620.1" /db_xref="InterPro:IPR000047" /db_xref="InterPro:IPR001356" /db_xref="UniProtKB/Swiss-Prot:Q92988" /db_xref="UniProtKB/TrEMBL:A5D7U2" /translation="MTSLPCPLPGRDASKAIFSDFAPVPSVVATYPLGLSPATSVASD LPYSGPYGHLLSYSYTAPATPGDSYLPCQQPAAPSQPEPKADSEKPPLSPESSEQRRQ APTKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKR SKYKKLRKQSSGEQEGGFPGRPPSLSPCSPPLPSLWDLPKVGALPTGGYRNSFGAWYQ HHSPDVLAPSQMM" assembly_gap 453784..453790 /estimated_length=7 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 454048..454062 /estimated_length=15 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 458177..458239 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 474391..474431 /estimated_length=41 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 495282..495294 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 509565..509935 /estimated_length=371 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 520285..520322 /estimated_length=38 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 549353..549360 /estimated_length=8 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 553297..553316 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 553534..553693 /estimated_length=160 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <559515..>559616 /locus_tag="PANDA_012988" mRNA <559515..>559616 /locus_tag="PANDA_012988" /product="hypothetical protein" CDS <559515..>559616 /locus_tag="PANDA_012988" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15621.1" /db_xref="InterPro:IPR013055" /db_xref="UniProtKB/Swiss-Prot:Q6ECK6" /translation="SLLLQDGGIHLQLQEVKRGKASQFFGLMGKRVRG" gene complement(<573544..>600067) /locus_tag="PANDA_012989" mRNA complement(join(<573544..573642,574420..574526, 575110..575256,577435..577528,578555..578695, 578904..578993,581686..581877,583562..583672, 586523..586621,588050..588139,591182..591264, 595410..595649,597244..597420,599917..>600067)) /locus_tag="PANDA_012989" /product="hypothetical protein" CDS complement(join(<573544..573642,574420..574526, 575110..575256,577435..577528,578555..578695, 578904..578993,581686..581877,583562..583672, 586523..586621,588050..588139,591182..591264, 595410..595649,597244..597420,599917..>600067)) /locus_tag="PANDA_012989" /note="GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003700 - transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15622.1" /db_xref="InterPro:IPR002515" /db_xref="InterPro:IPR002717" /db_xref="UniProtKB/Swiss-Prot:O95251" /db_xref="UniProtKB/TrEMBL:B3KN74" /translation="QRNAGSSSDGTEDSDFSTDLEHTDSSESDGTSRRSARVTRSSAR LSQSSQDSSPVRNLQSFGTEEPAYSTRRVTRSQQQPTPVTPKKYPLRQTRSSGSETEQ VVDFSDRETKNTADHDESPPRTPTGNAPSSESDIDISSPNVSHDESIAKDMSLKDSGS DLSHRPKRRRFHESYNFNMKCPTPGCNSLGHLTGKHERHFSISGCPLYHNLSADECKV RAQSRDKQIEERMLSHRQDDNNRHATRHQAPTERQLRYKEKVAELRKKRNSGLSKEQK EKYMEHRQTYGNTREPLLENLTSEYDLDLFRRAQARASEDLEKLRLQGQITEGSNMIK TIAFGRYELDTWYHSPYPEEYARLGRLYMCEFCLKYMKSQTILRRHMAKCVWKHPPGD EIYRKGSISVFEVDGKKNKIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVMTEADNTGC HLIGYFSKEKNSFLNYNVSCILTMPQYMRQGYGKMLIDFSYLLSKVEEKVGSPERPLS DLGLISYRSYWKEVLLRYLHNFQGKEISIKEISQETAVNPVDIVSTLQALQMLKYWKG KHLVLKRQDLIDEWIAKEAKRSNSNKTMDPSCLKWTPPKGT" assembly_gap 622300..622496 /estimated_length=197 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 622830..622837 /estimated_length=8 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <646711..>663860 /locus_tag="PANDA_012990" mRNA join(<646711..646881,655231..655326,657063..657173, 657636..657770,658894..659095,660501..660651, 663563..>663860) /locus_tag="PANDA_012990" /product="hypothetical protein" CDS join(<646711..646881,655231..655326,657063..657173, 657636..657770,658894..659095,660501..660651, 663563..>663860) /locus_tag="PANDA_012990" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15623.1" /db_xref="UniProtKB/Swiss-Prot:Q7TNF9" /db_xref="UniProtKB/TrEMBL:A7MAZ6" /translation="ASVPCSVAPEKSVCRPQPPQVRRTFSLDTILSSYLLGQWPRDAD GAFTCCTNDKATQTPLSWQELEGERASSCTHKRSASWGSTDHRKEISKLKQQLQRTKL SRSGKEKERGSPLQGDHAVRGALRASPPSFPSGSPVLRLSPCLHRSLEGLNQELEEVF VKEQGEEELLRILDIPDGHRAPAPPQSGSCDHPLLLLEPGNLASSPSVPLASPQPSGR ASREEQRGAVEELASIPNDKASSPGRPACLEDSSPSPVLAFAASPRPNHSYVFKREPP EGCERVRVFEEAVSPGPDLAFLTSCPDKNKVHFNPTGSAFCPVSLMKPLFPSMGFIFR NCPSSPGSPLPPASPRPPPRKDPEASKAASLPSEPWQRAPPSEEPVLFQSSLVV" assembly_gap 667219..667238 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="unspecified" gene <667240..>672086 /locus_tag="PANDA_012991" mRNA join(<667240..667313,667949..668052,668619..668749, 669025..669055,669631..669788,670778..670904, 671665..671771,671931..>672086) /locus_tag="PANDA_012991" /product="hypothetical protein" CDS join(<667240..667313,667949..668052,668619..668749, 669025..669055,669631..669788,670778..670904, 671665..671771,671931..>672086) /locus_tag="PANDA_012991" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15624.1" /db_xref="InterPro:IPR013657" /db_xref="UniProtKB/Swiss-Prot:Q8MII5" /db_xref="UniProtKB/TrEMBL:Q2HJG6" /translation="RLRLPLCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALT LVFIQCVINAVFAKILIQFFDTARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPT QVLGKSCKPIPVMLLGVTLLKKKYPMAKYLCVLLIVAGVALFMYKPKKVVGMEEHTVG YGELLLLLSLTLDGLTGVSQDHMRAHYQTGSNHMMLNINLWSTLLLGAGILLTGELWE SLSFAERHPAIIYNILLFGLTSALGQSFIFMTVVYFGPLTCSIITTTRKFFTILASVI LFANPISPLQWVGTVLVFLG" assembly_gap 672635..672781 /estimated_length=147 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 732075..>751614 /locus_tag="PANDA_012992" mRNA join(732075..732152,732810..732931,735400..735551, 735688..735815,742437..742614,745425..745480, 746181..746303,750041..750183,751473..>751614) /locus_tag="PANDA_012992" /product="hypothetical protein" CDS join(732075..732152,732810..732931,735400..735551, 735688..735815,742437..742614,745425..745480, 746181..746303,750041..750183,751473..>751614) /locus_tag="PANDA_012992" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15625.1" /db_xref="InterPro:IPR000210" /db_xref="InterPro:IPR002083" /db_xref="InterPro:IPR013069" /db_xref="InterPro:IPR013089" /db_xref="UniProtKB/Swiss-Prot:Q5NVK7" /db_xref="UniProtKB/TrEMBL:B2RYD9" /translation="MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFC REEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKF KFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCE VSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAIL AARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAA ADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLE TSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS" gene complement(<769462..>770163) /locus_tag="PANDA_012993" mRNA complement(<769462..>770163) /locus_tag="PANDA_012993" /product="hypothetical protein" CDS complement(<769462..>770163) /locus_tag="PANDA_012993" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15626.1" /db_xref="InterPro:IPR010450" /db_xref="UniProtKB/Swiss-Prot:O95157" /db_xref="UniProtKB/TrEMBL:Q8NDC3" /translation="VIYGQDDGPPGSEDPERDDHESQPRPRMPRKRGHISPKSRSVAN STLLGLLAPPGEAWGVLGQPPNRPNHSPPPSAKVKKIFGWGDFYSNIKTVALNLLVTG KIVDHGNGTFSVHFRHNATGQGNISISLVPPSKAVEFHQEQQIFIEAKASKIFNCRME WEKVERGRRTSLCTHDPAKTCSRDHAQSSAAWSCSQPFKVVCVYIAFYSTDYRLVQKV CPDYNYHSGTPYYPSG" assembly_gap 771838..772065 /estimated_length=228 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 772289..772328 /estimated_length=40 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 772674..772784 /estimated_length=111 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 779376..779454 /estimated_length=79 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 796150..796276 /estimated_length=127 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<816893..>827069) /locus_tag="PANDA_012994" mRNA complement(join(<816893..817219,817859..817961, 819386..819638,823262..823597,826928..>827069)) /locus_tag="PANDA_012994" /product="hypothetical protein" CDS complement(join(<816893..817219,817859..817961, 819386..819638,823262..823597,826928..>827069)) /locus_tag="PANDA_012994" /note="GO_function: GO:0004872 - receptor activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15627.1" /db_xref="InterPro:IPR000488" /db_xref="InterPro:IPR001368" /db_xref="InterPro:IPR013032" /db_xref="UniProtKB/Swiss-Prot:P08138" /db_xref="UniProtKB/TrEMBL:A5PJV7" /translation="VSLGAAKEACPTDLYTHSGECCKACNLGEGVAQPCGANQTVCEP CLDTATEPCKPCTECVGLQSMSAPCVEADDAVCRCAYGYYQDETTGRCEACRVCEAGS GLVFSCQDRQNTVCEECPDGTYSDEANHVDPCLPCTVCEDTERQLRECTRWADAECEE IPGRWITRSTPSEGSDSTAPSTEEPEGPPEQDVIASTVADVVTTVMGSSQPVVTRGTT DNLIPVYCSILAAVVVGLVAYIAFKRWNSCKENKQGANSRPANQTPPPEGEKLHSDSG ISPLMPPGFLAALKGDGGLYSSLPPAKREEVEKLLNGSAGDTWRHLAGELGYQPEHID SFTHEACPVRALLASWAAQDSATLDALLAALRRIERADIVESLCSESTATSPV" assembly_gap 817811..817828 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 831674..831708 /estimated_length=35 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 832785..832793 /estimated_length=9 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 833884..833889 /estimated_length=6 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 835200..835264 /estimated_length=65 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 840149..840174 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 854441..854578 /estimated_length=138 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 857948..857954 /estimated_length=7 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 861093..861097 /estimated_length=5 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 890736..890979 /estimated_length=244 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 898236..906509 /locus_tag="PANDA_012995" /pseudo CDS join(898236..898323,899664..899825,902026..902108, 902111..902167,902327..902443,904905..905000, 906300..906509) /locus_tag="PANDA_012995" /note="similar to P35232; contains short intron which is an attempt to correct a frameshift in the coding region" /pseudo /codon_start=1 assembly_gap 912978..913177 /estimated_length=200 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 913607..913711 /estimated_length=105 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 920660..920733 /estimated_length=74 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 937079..937512 /estimated_length=434 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 954402..954403 /estimated_length=2 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 963498..964522 /estimated_length=1025 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 978064..>991129 /locus_tag="PANDA_012996" mRNA join(978064..978966,981469..981616,981964..982079, 982548..982692,990621..>991129) /locus_tag="PANDA_012996" /product="hypothetical protein" CDS join(978064..978966,981469..981616,981964..982079, 982548..982692,990621..>991129) /locus_tag="PANDA_012996" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="EFB15628.1" /db_xref="InterPro:IPR007087" /db_xref="InterPro:IPR015880" /db_xref="UniProtKB/Swiss-Prot:Q9Y2D9" /db_xref="UniProtKB/TrEMBL:A4QPD9" /translation="MSHTASSRQELVESCAARAVGMAQEDSRRAPVPSTFYHGANQEL DLSTKVYKRESGSPYSVLVDTKMSKPHLHEAEEQPYFREPRAVSDVRAVKEDRENSDD TEEEEEEEVSYKREQIIVEVNLNNQTLNVSKGEKGVSSQSKETPVLKTSSEEEEEESE EEATDDSNDYGENGRQKKKEKAAEKASVTQRRTRRAGSVAAATTSPTPRTTRGRRKSV EPPKRKKRAAKEPKAPVQKAKCEEKETLTCEKCPRVFNTRWYLEKHMNVTHRRMQICD KCGKKFVLESELSLHQQTDCEKNIQCVSCNKSFKKLWSLHEHIKIVHGYAEKKFSCEI CEKKFYTMAHVRKHMVAHTKDMPFTCETCGKSFKRSMSLKVHSLQHSGEKPFRCENCD ERFQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQYFDEHMKTHTGEKPFICEICGKS FTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVTSPVNVPPAVQIP LTTSPATPVPSVVNTPATPTPPISMNPVSALPPRPIPHPFSHLHIHPHPHHPHHLPIP PVPHLPPPPALFKSEPLNHRGQGEDNFLRHLAEKNSSAQHH" assembly_gap 984792..984841 /estimated_length=50 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1012645..1012671 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1015746..1016002 /estimated_length=257 /gap_type="within scaffold" /linkage_evidence="unspecified" CONTIG join(ACTA01050982.1:1..23424,gap(91),ACTA01058982.1:1..6773,gap(9), ACTA01066982.1:1..10284,gap(42),ACTA01074982.1:1..1786,gap(1100), ACTA01082982.1:1..4958,gap(2),ACTA01090982.1:1..95,gap(122), ACTA01098982.1:1..6378,gap(497),ACTA01106982.1:1..14476,gap(20), ACTA01114982.1:1..9976,gap(165),ACTA01122982.1:1..3177,gap(13), ACTA01130982.1:1..107,gap(63),ACTA01138982.1:1..126,gap(81), ACTA01146981.1:1..430,gap(41),ACTA01154980.1:1..2273,gap(23), ACTA01162979.1:1..1091,gap(89),ACTA01170977.1:1..43147,gap(161), ACTA01178975.1:1..3810,gap(104),ACTA01186973.1:1..2815,gap(527), ACTA01194971.1:1..8475,gap(156),ACTA01002984.1:1..3393,gap(9), ACTA01010984.1:1..16228,gap(105),ACTA01018984.1:1..15836,gap(4), ACTA01026984.1:1..2579,gap(10),ACTA01034984.1:1..1086,gap(5241), ACTA01042983.1:1..12928,gap(156),ACTA01050983.1:1..11267,gap(2), ACTA01058983.1:1..23702,gap(186),ACTA01066983.1:1..7064,gap(12), ACTA01074983.1:1..13838,gap(142),ACTA01082983.1:1..163,gap(10), ACTA01090983.1:1..616,gap(207),ACTA01098983.1:1..25397,gap(24), ACTA01106983.1:1..6928,gap(34),ACTA01114983.1:1..1108,gap(17), ACTA01122983.1:1..1040,gap(90),ACTA01130983.1:1..6897,gap(110), ACTA01138983.1:1..4856,gap(135),ACTA01146982.1:1..331,gap(114), ACTA01154981.1:1..99,gap(267),ACTA01162980.1:1..206,gap(3), ACTA01170978.1:1..11116,gap(39),ACTA01178976.1:1..3541,gap(50), ACTA01186974.1:1..3259,gap(256),ACTA01194972.1:1..418,gap(16), ACTA01002985.1:1..99,gap(56),ACTA01010985.1:1..9207,gap(29), ACTA01018985.1:1..107,gap(34),ACTA01026985.1:1..5662,gap(19), ACTA01034985.1:1..15449,gap(16),ACTA01042984.1:1..151,gap(132), ACTA01050984.1:1..25597,gap(8),ACTA01058984.1:1..6714,gap(26), ACTA01066984.1:1..93,gap(438),ACTA01074984.1:1..55,gap(2), ACTA01082984.1:1..94,gap(43),ACTA01090984.1:1..38762,gap(9), ACTA01098984.1:1..22939,gap(7),ACTA01106984.1:1..257,gap(15), ACTA01114984.1:1..4114,gap(63),ACTA01122984.1:1..16151,gap(41), ACTA01130984.1:1..20850,gap(13),ACTA01138984.1:1..14270,gap(371), ACTA01146983.1:1..10349,gap(38),ACTA01154982.1:1..29030,gap(8), ACTA01162981.1:1..3936,gap(20),ACTA01170979.1:1..217,gap(160), ACTA01178977.1:1..68606,gap(197),ACTA01186975.1:1..333,gap(8), ACTA01194973.1:1..44381,gap(20),ACTA01002986.1:1..5396,gap(147), ACTA01010986.1:1..99056,gap(228),ACTA01018986.1:1..223,gap(40), ACTA01026986.1:1..345,gap(111),ACTA01034986.1:1..6591,gap(79), ACTA01042985.1:1..16695,gap(127),ACTA01050985.1:1..21534,gap(18), ACTA01058985.1:1..13845,gap(35),ACTA01066985.1:1..1076,gap(9), ACTA01074985.1:1..1090,gap(6),ACTA01082985.1:1..1310,gap(65), ACTA01090985.1:1..4884,gap(26),ACTA01098985.1:1..14266,gap(138), ACTA01106985.1:1..3369,gap(7),ACTA01114985.1:1..3138,gap(5), ACTA01122985.1:1..29638,gap(244),ACTA01130985.1:1..21998,gap(200), ACTA01138985.1:1..429,gap(105),ACTA01146984.1:1..6948,gap(74), ACTA01154983.1:1..16345,gap(434),ACTA01162982.1:1..16889,gap(2), ACTA01170980.1:1..9094,gap(1025),ACTA01178978.1:1..20269,gap(50), ACTA01186976.1:1..27803,gap(27),ACTA01194974.1:1..3074,gap(257), ACTA01002987.1:1..3260) //