LOCUS GJ062397 8185564 bp DNA linear CON 21-MAY-2010 DEFINITION TPA_asm: Bos taurus chromosome 15 genomic scaffold, whole genome shotgun sequence. ACCESSION GJ062397 DAAA02000000 VERSION GJ062397.1 DBLINK Project: 32899 KEYWORDS WGS; Third Party Data; TPA; TPA:assembly. SOURCE Bos taurus (cattle) ORGANISM Bos taurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. REFERENCE 1 (bases 1 to 8185564) AUTHORS Zimin,A.V., Delcher,A.L., Florea,L., Kelley,D.R., Schatz,M.C., Puiu,D., Hanrahan,F., Pertea,G., Van Tassell,C.P., Sonstegard,T.S., Marcais,G., Roberts,M., Subramanian,P., Yorke,J.A. and Salzberg,S.L. TITLE A whole-genome assembly of the domestic cow, Bos taurus JOURNAL Genome Biol. 10 (4), R42 (2009) PUBMED 19393038 REFERENCE 2 (bases 1 to 8185564) AUTHORS Salzberg,S.L., Zimin,A., Delcher,A., Florea,L., Kelley,D., Hanrahan,F., Marcais,G., Pertea,G., Puiu,D., Roberts,M., Schatz,M., Van Tassell,C., Yorke,J.C. and Poorani,S.J. TITLE Direct Submission JOURNAL Submitted (19-NOV-2009) Center for Bioinformatics and Computational Biology, University of Maryland, 3115 Biomolecular Sciences Building, College Park, MD 20742, USA COMMENT This assembly of the Bos taurus genome was created from the traces of Project 12555. This assembly closes thousands of gaps and corrects many inversions, deletions, translocations and single-nucleotide errors that were present on other assemblies, as determined by alignment to independent mapping data and to independently sequenced transcripts (full-length cDNAs). In this assembly synteny between the cow and human genomes and independent mapping data were used to assemble roughly 99% of the genome onto the 30 Bos taurus chromosomes. Bos_taurus_UMD3.1 (UMD3.1) is an update to the UMD3 assembly that corrects errors in the gap types. The gap type changes join many placed scaffolds together but do not change the sequences of the chromosomes or the sequences of the unplaced scaffolds. Assembly Name: Bos_taurus_UMD_3.1 (UMD3.1) Genome Coverage: 9x Annotation was produced by the NCBI Eukaryotic Genomes Annotation Pipeline Group using Gnomon, and added to the scaffolds in May 2010. FEATURES Location/Qualifiers source 1..8185564 /organism="Bos taurus" /mol_type="genomic DNA" /db_xref="taxon:9913" /chromosome="15" /note="breed: Hereford" assembly_gap 42516..42615 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 43660..43759 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 49953..50052 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 51452..52731 /estimated_length=1280 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 55455..55554 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 113089..113188 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 127453..128059 /estimated_length=607 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 147209..147856 /estimated_length=648 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 178971..179551 /estimated_length=581 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 254261..254432 /estimated_length=172 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 264152..264158 /estimated_length=7 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 320615..320714 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 328924..329447 /estimated_length=524 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 331081..331180 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 387294..387422 /estimated_length=129 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 391267..391367 /estimated_length=101 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 418502..438358 /gene="LOC618353" /locus_tag="BOS_14404" /db_xref="GeneID:618353" mRNA join(418502..418564,434175..434217,436542..436840, 437957..438358) /gene="LOC618353" /locus_tag="BOS_14404" /product="mCG4182-like" /db_xref="GeneID:618353" CDS join(418502..418564,434175..434217,436542..436840, 437957..438358) /gene="LOC618353" /locus_tag="BOS_14404" /codon_start=1 /product="mCG4182-like" /protein_id="DAA22417.1" /db_xref="GI:296480302" /db_xref="GeneID:618353" /translation="MTVTIGEQDRGRKEGEQAMVRGSVGSAQSPFGPVPGSPVMSGYY GVRRAFLSDPDFHNTKQFANDACTSSAAKPFACESSAGQGHAALLDPYFPEPYGDHRP TALTPNSGTLFSASALPPLLPPPFPSDPAHFALRDSWEQTVPEGLSQPDPVPADTLQS LAPSTGSLSQLESGGAAQHRSAGWGGPLTGVQSYSLHALEDLYHTQGYPTPAPYPFTS FMTMSNDPPPKVGPFSQDEGADTSALQDTSPWTKEDGSLAWGTYECRRAY" gene 450347..458007 /gene="LOC100294918" /locus_tag="BOS_14405" /db_xref="GeneID:100294918" mRNA join(450347..450371,455716..455945,457323..458007) /gene="LOC100294918" /locus_tag="BOS_14405" /product="hCG1647254-like" /db_xref="GeneID:100294918" CDS join(450347..450371,455716..455945,457323..457688) /gene="LOC100294918" /locus_tag="BOS_14405" /codon_start=1 /product="hCG1647254-like" /protein_id="DAA22418.1" /db_xref="GI:296480303" /db_xref="GeneID:100294918" /translation="MQGEKQPVGLYFEPEPIPSTPNYFQPREFSSCVSCEENPGFLDQ IFDSYLQPETHPDPSLSSMQSTPHYFPDSFQAAPFCFNQSLTPESPSDSSTLSGSLDY NYCPAQLPSYTAESHTALPQLDTRNCGHPSEDYTYSHPPAHAQYDSFSPASICCCASC EAERLDAFRASDCFSYPSTDYVNFAPSAAASSDLYKRETNWDICYS" assembly_gap 489596..491651 /estimated_length=2056 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<512712..>537705) /gene="POU2AF1" /locus_tag="BOS_14367" /db_xref="GeneID:528475" mRNA complement(join(<512712..514826,517719..517984, 518069..518111,518610..518740,537551..>537705)) /gene="POU2AF1" /locus_tag="BOS_14367" /product="POU domain class 2-associating factor 1" /db_xref="GeneID:528475" CDS complement(join(514512..514826,517719..517984, 518069..518111,518610..518740,537551..537566)) /gene="POU2AF1" /locus_tag="BOS_14367" /note="OCT binding factor 1; B-cell-specific coactivator OBF-1; POU domain, class 2, associating factor 1; OCT-binding factor 1" /codon_start=1 /product="POU domain class 2-associating factor 1" /protein_id="DAA22384.1" /db_xref="GI:296480269" /db_xref="GeneID:528475" /translation="MLWQKPTAPEQAPAPPRPYQGVRVKEPVKELLRRKRGHASSGAS VTPTAVVLPHQPLATYTTVGPSCLDMEVSASTVTEEGALCAGWLSQPAPAALQPLAPW TPYTEYVSHEAVSCPYSADMYVQPVCPSYTVVGPSSVLTYASQPLITNVTTRSAAAPT VGPPLEGPEHQAPLTYFPWPQPLSTLPTSTLQYQPPAPALPGPQFVQLPISIPEPVLP DAEDPRRAIGSLTIDKLLLEEEDSDTYALNHTLSVEGF" assembly_gap 543778..543871 /estimated_length=94 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 643068..643167 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 652324..652423 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(666093..681143) /gene="BTG4" /locus_tag="BOS_14383" /db_xref="GeneID:519995" mRNA complement(join(666093..666598,670458..670656, 680183..680320,680971..681143)) /gene="BTG4" /locus_tag="BOS_14383" /product="B-cell translocation gene 4-like" /db_xref="GeneID:519995" CDS complement(join(666419..666598,670458..670656, 680183..680320,680971..681143)) /gene="BTG4" /locus_tag="BOS_14383" /codon_start=1 /product="B-cell translocation gene 4-like" /protein_id="DAA22398.1" /db_xref="GI:296480283" /db_xref="GeneID:519995" /translation="MRDEIATTVFFVTRLVKKHDKLNKEQIEDFAEKLMTVLFETYRN HWHSDHPSKGQAFRCIRINNNQNKDPILERACAESNVDFSYLGLPKEMTIWVDPFEVC CRYGEKNHPFTIASFKGRWEEWKLSQQISDAVNRATLDYSSGASSDEDSCNKEPQIIP KVSNPKSIYQVENLKQPFQSWFRIPRKKNTRDGRMGLLGNAYHALHKTPKGHRPTAGH RVDRYHWVNTH" gene 695530..695613 /gene="MIR34B" /locus_tag="BOS_14381" /db_xref="GeneID:791003" ncRNA 695530..695613 /gene="MIR34B" /locus_tag="BOS_14381" /ncRNA_class="miRNA" /product="microRNA mir-34b" /db_xref="GeneID:791003" gene 696231..696307 /gene="MIR34C" /locus_tag="BOS_14382" /db_xref="GeneID:791067" ncRNA 696231..696307 /gene="MIR34C" /locus_tag="BOS_14382" /ncRNA_class="miRNA" /product="microRNA mir-34c" /db_xref="GeneID:791067" gene <697526..>731833 /gene="MGC133619" /locus_tag="BOS_14380" /db_xref="GeneID:767960" mRNA join(<697526..697754,698220..698258,698761..698831, 726451..726510,727516..727568,731637..>731833) /gene="MGC133619" /locus_tag="BOS_14380" /product="hypothetical protein LOC767960" /db_xref="GeneID:767960" CDS join(697529..697754,698220..698258,698761..698831, 726451..726510,727516..727568,731637..731694) /gene="MGC133619" /locus_tag="BOS_14380" /codon_start=1 /product="hypothetical protein LOC767960" /protein_id="DAA22397.1" /db_xref="GI:296480282" /db_xref="GeneID:767960" /translation="METRPSSSLSSPEESCEAFPQGLLVFTGSSDRDANLAKQFWIGA SMYPHNESQLVLSRGSSQRLPVARPSRSSAPEKTYFQPFFLEESKSRDVTAETLKIQE SEEKKKYLQKAKKRDEIIQLLRKQREERILKELISLPHKPKGKVHKAKKVISESDKED QEEVKALD" gene 735574..759093 /gene="LAYN" /locus_tag="BOS_14384" /db_xref="GeneID:527089" mRNA join(735574..735761,739726..740023,749882..750039, 754589..754621,755435..755518,756505..756604, 758472..759093) /gene="LAYN" /locus_tag="BOS_14384" /product="chondrolectin-like" /db_xref="GeneID:527089" CDS join(735677..735761,739726..740023,749882..750039, 754589..754621,755435..755518,756505..756604, 758472..758835) /gene="LAYN" /locus_tag="BOS_14384" /codon_start=1 /product="chondrolectin-like" /protein_id="DAA22399.1" /db_xref="GI:296480284" /db_xref="GeneID:527089" /translation="MPRGAAPQAVLLAALLAGLRGATGRLLSGQPVCRLGTQKPCYEV IYFRDASRRLNFEEARAACRRNGGQLVSIESEDEQRLIEKFIENLLASDGDFWIGLRR REDQKSNGTACQDLYAWIDGSTAAFRNWYVDEPSCGSEVCVVMYHQPSAPAGIGGPYM FQWNDDRCTMKNNFICKYSDEKPTVPSTRTGGEEIEPATPILPEDTEKADATEILKES KEAALNLAYILIPSILVLLLVVTTGVCWVWICRRRKRGQPDPSTKEQRPTWPAPQPGN SPDLEVYNVIRKQSEADLAETRPDLKNISFRARSGEASPDAVSCDYENVAVNPSESGF VTLVSMESGFVTNDDYEFSPGRAGRSKESGWVENEIYGY" assembly_gap 794982..795945 /estimated_length=964 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 807196..933448 /gene="SIK2" /locus_tag="BOS_14385" /db_xref="GeneID:539570" mRNA join(807196..807330,820558..820674,823428..823491, 893022..893183,908700..908824,909251..909374, 910738..910958,912715..912867,920130..920294, 926412..926640,927110..927394,927528..927691, 928679..928792,929693..929784,930676..933448) /gene="SIK2" /locus_tag="BOS_14385" /product="salt-inducible kinase 2" /db_xref="GeneID:539570" CDS join(807196..807330,820558..820674,823428..823491, 893022..893183,908700..908824,909251..909374, 910738..910958,912715..912867,920130..920294, 926412..926640,927110..927394,927528..927691, 928679..928792,929693..929784,930676..931246) /gene="SIK2" /locus_tag="BOS_14385" /codon_start=1 /product="salt-inducible kinase 2" /protein_id="DAA22400.1" /db_xref="GI:296480285" /db_xref="GeneID:539570" /translation="MVMADGPRHLQRGPVRVGFYEIEGTLGKGNFAVVKLGRHRITRT EVAIKIIDKSQLDEVNLEKIYREVKIMKLLDHPHIIKLYQVMETKSMLYLVTEYAKNG EIFDYLANHGRLNESEARRKFWQILSAVDYCHGRQIVHRDLKAENLLLDNNMNIKIAD FGFGNFFKSGELLATWCGSPPYAAPEVFEGQQYEGPQLDIWSMGVVLYVLVCGALPFD GPTLPILRQRVLEGRFRIPYFMSEDCEHLIRRMLVLDPAKRLTIAQIKEHKWMLVEVP VQRPVLYPQEQENEPSIGEFNEQVLRLMHGLGIDQQKTIEALQNKSYNHFAAIYYLLV ERLKSHRSSFPVEQRLDARQRRPSTIAEQTVAKAQTVGLPVTVHSPSVRAMRSALLPQ ASTVDAFAFPTSGCQAEAAFMEEECVDTPKVNGCLLDPVPPILARKGCQSLPSNMMET SIDEGLETEGEAEEDPSQAFDAFQSTRGGQRRHTLSEVTNQLVVVPGSGKIFSMSDNP SLDSVDSEYDMGSVQRDLHFLEDNPSLKDMMLANPPSPRMTSPFVSLRPANPAMQALS AQKREAHNRSPVSFREGRRASDTSLTQGIVAFRQHLQNLARTKGILELNKVQLLYEQM GSEADPSLASPAAQLQDLASSCPQEEAPPQQKSVSALPGGSAHPQLSQRHSLEAQYLQ HRLQKPSLLSKAQNTCQLYCKEPPRSLEQQLQEHRLQQKRLFLQKQSQLQAYFNQMQI AESSYPQPLPHQETPPQPSQPPPPFSLTQPLSPVLEPASEHMPFSPFLSPYPEMRLQP LPASPGARGAPPPPPPPSGGAPAPLQFYQTCELPGAATPEPEHPTPGQYPADGTPQSS MDGPDCPRSSGLQEAPSGYDPLALSEFPGLFDCEMLEAVDPQHSGYVLVN" gene complement(931804..969698) /gene="PPP2R1B" /locus_tag="BOS_14406" /db_xref="GeneID:100138150" mRNA complement(join(931804..931973,934034..934404, 934815..934954,944040..944161,948405..948496, 948889..949031,949390..949544,953541..953601, 956580..956753,957478..957612,957970..958040, 958484..958598,959263..959418,963787..963934, 964223..964455,967629..967729,968133..968223, 969072..969373,969653..969698)) /gene="PPP2R1B" /locus_tag="BOS_14406" /product="protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform-like" /db_xref="GeneID:100138150" CDS complement(join(931804..931973,934034..934404, 934815..934954,944040..944161,948405..948496, 948889..949031,949390..949544,953541..953601, 956580..956753,957478..957612,957970..958040, 958484..958598,959263..959418,963787..963934, 964223..964455,967629..967729,968133..968223, 969072..969373,969653..969698)) /gene="PPP2R1B" /locus_tag="BOS_14406" /codon_start=1 /product="protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform-like" /protein_id="DAA22419.1" /db_xref="GI:296480304" /db_xref="GeneID:100138150" /translation="MPEEGVEGFCGSLWKHLQLRKRGPGRGLHPLCRNSVPRLRLPPS SGLSPAYQGAGRGQGVGRGQGAQRAAESRRRRKNMAGAAGPATGSGAAGGDGDDSLYP IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVLLALA EQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEAHF VPLVKRLASGDWFTSRTSACGLFSVCYPRASVAVKGEIRQYFRSLCSDDTPMVRRAAA SKLGEFAKVLELDSVKSEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQEDIEALV MPTLRQAAEDKSWRVRYMVADKFSELQKAVGPKITLNDLIPAFQNLLKDCEAEVRAAA AHKVKELCENLPMEGRETIIMNQILPYIKELVSDTNQHVKSALASVIMGLSTILGKEN TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTE WAQNTIVPKVLVMANDPNYLHRMTTLFCINALSEACGQEITTKQMLPIVLKMAGDQVA NVRFNVAKSLQKIGPILDTDALQEEVKPVLQKLGQDEDMDVKYFAQEAISAMAQRLRK LDFPVKDSEEPSTPGPDKNHFLRPREPGEDTGKAQRDRVARVASEEAVEADQFRGPGA AKVSPEQTPPLLTGPMLSKDPTQRGNGQCRHERAPLPPRQGAGPPSLSGSRQPQQTGS GTAPTLRAKGTPTVCPWRSDAGREEPFSSVSSSSLTGPSCGDWRMAGVENLPPPPLFP RRQQGGGEDGASVAVSGGPSTRACCANVLCDIFGSSQDTLTLWNPGTFQGGVSPTLRR RWPPVSGVSARCSEVDPETELRLYRFE" gene complement(988473..1108448) /gene="ALG9" /locus_tag="BOS_14386" /db_xref="GeneID:504346" mRNA complement(join(988473..988708,1014718..1014848, 1048626..1048755,1049887..1050034,1050645..1050774, 1053034..1053188,1055773..1055895,1069937..1070042, 1070225..1070312,1076944..1077079,1079897..1079985, 1085552..1085622,1096996..1097130,1098118..1098256, 1099268..1099405,1106300..1106458,1106609..1106812, 1107662..1107818,1108277..1108448)) /gene="ALG9" /locus_tag="BOS_14386" /product="asparagine-linked glycosylation 9, alpha-1,2-mannosyltransferase homolog" /db_xref="GeneID:504346" CDS complement(join(988585..988708,1014718..1014848, 1048626..1048755,1049887..1050034,1050645..1050774, 1053034..1053188,1055773..1055895,1069937..1070042, 1070225..1070312,1076944..1077079,1079897..1079985, 1085552..1085622,1096996..1097130,1098118..1098256, 1099268..1099405,1106300..1106458,1106609..1106812, 1107662..1107818,1108277..1108448)) /gene="ALG9" /locus_tag="BOS_14386" /codon_start=1 /product="asparagine-linked glycosylation 9, alpha-1,2-mannosyltransferase homolog" /protein_id="DAA22401.1" /db_xref="GI:296480286" /db_xref="GeneID:504346" /translation="MAPRRLLLVGEGNFSFAVALSETLDPNTSLTATCPQRSADLARD LVVRENLRRLRERGNEVRFGVDCTHLADAFEPQDREFDRIYFNFPHCGRKAGVAKNRE LLAKFFRSCADVLAEDGEVHVALCRGQGGTPADKPMREWHNSWQVVAMAALGGFILSD VHPFNCKALPGYKCTGYRSQDKSFHIEGALNHIFTRSLPFESLQPRISRIKLGDQWFS FLEPEVLVGKLNRLAMASRGARQRLKGSGGSGGDTASAADKLRELLCSREAGSAEPRP ELSGNKAGQVWAPEGSTAFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGKGFQ TWEYSPAYAIRSYAYLLLHAWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYK AVCKKFGLHVSRMMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSFAVL GVAAGAILGWPFSAALGLPIAFDLLIMKQRWKSFFHWSLVALVLFLVPVVGIDSYYYG KLVIAPLNIVLYNVFTPHGPDLYGTEPWYFYLINGFLNFNVVFALALLVLPLTSLMEY LLQRFHVQNLGHPYWLTLAPMYIWFIIFFIQPHKEERFLFPVYPLICLCGAVALSALQ KCYHFVFQRYRLEHYTVTSNWLALGTLFLFGLLSFSRSVALFRGYHGPLDLYPEFYRI ATDPTIHSVPEGRPVNVCVGKEWHRFPSSFLLPDNWQLQFIPSEFRGQLPKPFAEGPL ATRTVPTDMNDQNLEEPSRYIDISKCHYLVDLDTMRETPREPKYSSNREEWINLAYRP FLDASRSSRLLRAFYVPFLSDQYTVYANYTILKPRKAKQTRKRSGG" assembly_gap 1073186..1073921 /estimated_length=736 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1091739..1092701 /estimated_length=963 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 1108547..1113172 /gene="MGC134087" /locus_tag="BOS_14372" /db_xref="GeneID:538766" mRNA join(1108547..1108934,1111673..1111903,1112647..1112713, 1112882..1113172) /gene="MGC134087" /locus_tag="BOS_14372" /product="hypothetical protein LOC538766" /db_xref="GeneID:538766" CDS join(1108893..1108934,1111673..1111903,1112647..1112713, 1112882..1113051) /gene="MGC134087" /locus_tag="BOS_14372" /codon_start=1 /product="hypothetical protein LOC538766" /protein_id="DAA22389.1" /db_xref="GI:296480274" /db_xref="GeneID:538766" /translation="MTATDYHCYSEFFQRQVLACFLTNPHYGSLINADGHAEVWTDWN DMSKFFQYGWRCNTNEDAYSNRTLMGNWNQERYDLKNIVQPKPLPSQFGHYFETTYDT SYNNRRPLSTHRFKREPHWFPGHQPELVPPPYKCTEKSTYMTSYSKPQTDHHSVCVWN PSNCQFQSP" assembly_gap 1113759..1113858 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<1127790..>1131015) /gene="CRYAB" /locus_tag="BOS_14343" /db_xref="GeneID:281719" mRNA complement(join(<1127790..1128074,1129565..1129687, 1130815..>1131015)) /gene="CRYAB" /locus_tag="BOS_14343" /product="alpha-crystallin B chain" /db_xref="GeneID:281719" CDS complement(join(1127871..1128074,1129565..1129687, 1130815..1131015)) /gene="CRYAB" /locus_tag="BOS_14343" /note="crystallin, alpha polypeptide 2; alpha(B)-crystallin" /codon_start=1 /product="alpha-crystallin B chain" /protein_id="DAA22360.1" /db_xref="GI:296480245" /db_xref="GeneID:281719" /translation="MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSL SPFYLRPPSFLRAPSWIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHG KHEERQDEHGFISREFHRKYRIPADVDPLAITSSLSSDGVLTVNGPRKQASGPERTIP ITREEKPAVTAAPKK" gene <1132050..>1133380 /gene="HSPB2" /locus_tag="BOS_14352" /db_xref="GeneID:508671" mRNA join(<1132050..1132212,1132710..>1133380) /gene="HSPB2" /locus_tag="BOS_14352" /product="heat shock 27kDa protein 2" /db_xref="GeneID:508671" CDS join(1132119..1132212,1132710..1133164) /gene="HSPB2" /locus_tag="BOS_14352" /inference="similar to AA sequence:RefSeq:NP_001091850.1" /codon_start=1 /product="heat shock 27kDa protein 2" /protein_id="DAA22369.1" /db_xref="GI:296480254" /db_xref="GeneID:508671" /translation="MSGRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEILTPTLY HGYYVRPRAAPGGEGSRAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSAR HPQRLDRHGFVSREFCRTYVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEV YISLLPAPPDPEEEEEAVGVEP" gene 1136726..1143754 /gene="LOC614490" /locus_tag="BOS_14387" /db_xref="GeneID:614490" mRNA join(1136726..1136840,1141415..1141452,1142608..1142687, 1142825..1143754) /gene="LOC614490" /locus_tag="BOS_14387" /product="hypothetical protein" /db_xref="GeneID:614490" CDS join(1136809..1136840,1141415..1141452,1142608..1142687, 1142825..1143076) /gene="LOC614490" /locus_tag="BOS_14387" /codon_start=1 /product="hypothetical protein" /protein_id="DAA22402.1" /db_xref="GI:296480287" /db_xref="GeneID:614490" /translation="MGNQLCCGRSWSCTSTLQRKKKIGSQARRTLRRQQQQPQHEWWR QLNDTKDHDTMGHTYEQVLRQPVSQERSRQSLRSEEGSLYYADIQLYRLPQPRSVQEV KHLQLKNATEYATLRFPQVTPRYDSKNGTLV" gene 1144221..1166423 /gene="LOC100295033" /locus_tag="BOS_14407" /note="The sequence of the transcript was modified to prevent a premature stop codon represented in this assembly." /pseudo /db_xref="GeneID:100295033" exon 1144221..1144321 /gene="LOC100295033" /locus_tag="BOS_14407" /number=1 /db_xref="GeneID:100295033" exon 1153163..1153464 /gene="LOC100295033" /locus_tag="BOS_14407" /number=2 /db_xref="GeneID:100295033" exon 1153597..1153691 /gene="LOC100295033" /locus_tag="BOS_14407" /number=3 /db_xref="GeneID:100295033" exon 1166226..1166423 /gene="LOC100295033" /locus_tag="BOS_14407" /number=4 /db_xref="GeneID:100295033" gene 1173266..1223706 /gene="DIXDC1" /locus_tag="BOS_14408" /db_xref="GeneID:541211" mRNA join(1173266..1173269,1173549..1173607,1176039..1176168, 1181904..1182029,1184468..1184699,1185450..1185557, 1191388..1191500,1193133..1193281,1196083..1196172, 1198255..1198308,1199670..1199720,1202061..1202165, 1202526..1202579,1203185..1203277,1203361..1203432, 1204120..1204209,1204546..1204707,1205214..1205280, 1217438..1217543,1218656..1218764,1220456..1223706) /gene="DIXDC1" /locus_tag="BOS_14408" /product="DIX domain containing 1" /db_xref="GeneID:541211" CDS join(1173266..1173269,1173549..1173607,1176039..1176168, 1181904..1182029,1184468..1184699,1185450..1185557, 1191388..1191500,1193133..1193281,1196083..1196172, 1198255..1198308,1199670..1199720,1202061..1202165, 1202526..1202579,1203185..1203277,1203361..1203432, 1204120..1204209,1204546..1204707,1205214..1205280, 1217438..1217543,1218656..1218764,1220456..1220536) /gene="DIXDC1" /locus_tag="BOS_14408" /codon_start=1 /product="DIX domain containing 1" /protein_id="DAA22420.1" /db_xref="GI:296480305" /db_xref="GeneID:541211" /translation="MGAHLDRNLALVKAEGTAACRQQLQAYVAWVNAQLKKRPAVKPV QDLRQDLRDGVILAYLIEIVAGEKLSGVQLSPSNQQEMKNNVEKVLQFVASKKIRMHQ TSAKDIVEGNLKSIMRLVLALAAHFKPGSGRTVSQGRDAGAPLQTHQPHCATAVAQGA AAALADVCHDMSRSGRDVFRYRQRNNSMDEEIENPCWSVRALVQQYEGQQRSPSESSC SSLTSPSPIHSAKSESVITQSEERADFVIIPSEGVENRTEETDSPLPRDWRPGSPRTY LETSWEEQLLEQQEHLEKEMEEAKKMISGLQALLLNGSLPEDEQERPLALCEPGVNPE EQLIIIQSRLDQSIEENQDLKKELLKYKQEARNLQGIKDALQQRLTQQDASVLQLKQE LLRANMDKDELHNQNVDLQRKLEERNRLLGEYKKELGQKDRLLLQNQAKLEEALRKLS EASYQQVDLERELEHKDVLLAHCMKREADEVTNYNNHSSQSNGFLLPAAGKGAASVVH RGSSDLQLVRDALRSLRTSFSGHDPQHHTIDSLEQGISSLMERLHAVETQRKQERRVR GKSPRTQAGSEYRESWPPNSKLPHSQSSPTVSSACTKVLYFTDRSLTPFMVNIPKRLG EVTLKDFKAAIDREGNHRYHFKALDPEFGTVKEEVFHDDDAIPGWEGKIVAWVEEDHG EN" assembly_gap 1180096..1180658 /estimated_length=563 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 1225961..1259270 /gene="DLAT" /locus_tag="BOS_14388" /db_xref="GeneID:512723" mRNA join(1225961..1226278,1226760..1226861,1227712..1227836, 1227982..1228135,1230844..1230970,1233121..1233312, 1234572..1234721,1244228..1244295,1245334..1245426, 1245788..1245895,1246719..1246834,1256505..1256667, 1257907..1258043,1258628..1259270) /gene="DLAT" /locus_tag="BOS_14388" /product="dihydrolipoamide S-acetyltransferase-like" /db_xref="GeneID:512723" CDS join(1226000..1226278,1226760..1226861,1227712..1227836, 1227982..1228135,1230844..1230970,1233121..1233312, 1234572..1234721,1244228..1244295,1245334..1245426, 1245788..1245895,1246719..1246834,1256505..1256667, 1257907..1258043,1258628..1258757) /gene="DLAT" /locus_tag="BOS_14388" /codon_start=1 /product="dihydrolipoamide S-acetyltransferase-like" /protein_id="DAA22403.1" /db_xref="GI:296480288" /db_xref="GeneID:512723" /translation="MWRVCARRAQNAAPRAGFGARWTAFREEPGAPCVTPQAGSALAR CSSKTPGYGRVRALCGWSPVSRATPRNRVLLQLWGSPSRRWYSLPPHQKVPLPSLSPT MQAGTIARWEKKEGEKINEGELIAEVETDKATVGFESVEECYMAKILVAEGTRDVPVG AIICITVDKPEDVEAFKNYTLDSSAAPAPPAAPAPTPAAPAPSPTPSAQAPGSSYPTH MQVLLPALSPTMTMGTVQRWEKKVGEKLNEGDLLAEIETDKATIGFEVQEEGYLAKIL IPEGTRDVPLGTPLCIIVEKEADIPAFADYRPAEVTDLKPPAPPPIPSPVAPVPPAPQ PVAPPPSAPRPAAPAGPKGRVFVSPLAKKLAAEKGIDLTQVKGTGPDGRIIKKDIDSF VPTKAAPTPAAAVPPPSPGVAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSI DVNMGEVLLVRKELNKMLEGKSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHV VDISVAVSTPAGLITPIVFNAHIKGLETIANDVVSLATKAREGKLQPHEFQGGTFTIS NLGMFGIKNFSAIINPPQACILAIGASEDRLVPADNEKGFDVASMMSVTLSCDHRVVD GAVGAQWLAEFRKYLEKPITMLL" gene complement(<1262325..>1268387) /gene="PIH1D2" /locus_tag="BOS_14374" /db_xref="GeneID:539917" mRNA complement(join(<1262325..1262663,1264402..1264667, 1265922..1266167,1266595..1266718,1267127..1267329, 1268357..>1268387)) /gene="PIH1D2" /locus_tag="BOS_14374" /product="PIH1 domain-containing protein 2" /db_xref="GeneID:539917" CDS complement(join(1262529..1262663,1264402..1264667, 1265922..1266167,1266595..1266718,1267127..1267303)) /gene="PIH1D2" /locus_tag="BOS_14374" /inference="similar to AA sequence:RefSeq:NP_001033278.1" /codon_start=1 /product="PIH1 domain-containing protein 2" /protein_id="DAA22391.1" /db_xref="GI:296480276" /db_xref="GeneID:539917" /translation="MESSSKGLLTQVTQFWNLLDDLAESNPESYQKFIQQQLKEGKEL CAAPEPQLCLQTRILKPKEKLLFINLCQWKRIPAPESATHPVPLSIGRPEDISETSDV YTVIDVAYHPDVLQAAEKDQVKKDQLIRMAMRCIEEQFQFTLSNCYYITKFRIKGSIQ RMKQNLMGIQTNPADLREKMRNELTLEKIRSSTVSNSDQFPQLLLPEDQVSSKTACLI EEISSTEIKVEMKRPAYELKIVADQNEKPLKIELKVELPGVNSVSLCDLSVSEDDILI EVSEKYRLYLNLPESVDTEMTTAKFIKEKATLIVTMPLV" gene 1268718..1279192 /gene="MGC143285" /locus_tag="BOS_14360" /db_xref="GeneID:513716" mRNA join(1268718..1269308,1270116..1270192,1275262..1275362, 1276891..1277040,1277975..1278028,1278460..1279192) /gene="MGC143285" /locus_tag="BOS_14360" /product="hypothetical protein LOC513716" /db_xref="GeneID:513716" CDS join(1275280..1275362,1276891..1277040,1277975..1278028, 1278460..1278964) /gene="MGC143285" /locus_tag="BOS_14360" /codon_start=1 /product="hypothetical protein LOC513716" /protein_id="DAA22377.1" /db_xref="GI:296480262" /db_xref="GeneID:513716" /translation="MWKIRELEKQMDDAYRGTKRRMLPSSSSRMRSDGFDEESQRDYW RPKNEICGALDDGFLKAKSWNKKLYDYEANMPDRWGHSGYKELYPEEFETDSSDQQDI TNGKKTSPQVKSSTHESHKHKKSKKSHKKKQKKKSHKKQKKSKKEATDITADSSSEFS EETGASSTRKRKQPHKRKKKSRKKSLKKSPLLEAESDTSPSDDSASSSSEESEERDTK KTKRKKREKKAHIPVVNNEIQERTNKRTNWKVATDERSAESSEDD" gene complement(<1281040..>1283023) /gene="TIMM8B" /locus_tag="BOS_14379" /db_xref="GeneID:618131" mRNA complement(join(<1281040..1281435,1282915..>1283023)) /gene="TIMM8B" /locus_tag="BOS_14379" /product="mitochondrial import inner membrane translocase subunit Tim8 B" /db_xref="GeneID:618131" CDS complement(join(1281268..1281435,1282915..1282998)) /gene="TIMM8B" /locus_tag="BOS_14379" /codon_start=1 /product="mitochondrial import inner membrane translocase subunit Tim8 B" /protein_id="DAA22396.1" /db_xref="GI:296480281" /db_xref="GeneID:618131" /translation="MAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKP GNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQRGGQ" gene <1283177..>1294782 /gene="SDHD" /locus_tag="BOS_14341" /db_xref="GeneID:281481" mRNA join(<1283177..1283232,1285964..1286080,1287443..1287587, 1293777..1294616,1294717..>1294782) /gene="SDHD" /locus_tag="BOS_14341" /product="succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial" /db_xref="GeneID:281481" CDS join(1283181..1283232,1285964..1286080,1287443..1287587, 1293777..1293942) /gene="SDHD" /locus_tag="BOS_14341" /inference="similar to AA sequence:RefSeq:NP_776604.1" /note="integral membrane protein; mitochondrial succinate dehydrogenase complex subunit D; QPs3; cybS; CII-4; succinate-ubiquinone reductase membrane anchor subunit" /codon_start=1 /product="succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial" /protein_id="DAA22358.1" /db_xref="GI:296480243" /db_xref="GeneID:281481" /translation="MAALWRLSVLCGAREGRALFLRTPVVRPALVSAFLQDRPAQGWC GTQHIHLSPSHHSGSKAASLHWTGERVVSVLLLGLIPAAYLNPCSAMDYSLAATLTLH SHWGIGQVVTDYVHGDAVQKAAKTGLLVLSAFTFAGLCYFNYHDVGICKAVAMLWKL" assembly_gap 1294617..1294716 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1295723..1295822 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(1312139..1319806) /gene="LOC511636" /locus_tag="BOS_14409" /note="The sequence of the transcript was modified to remove frameshifts and prevent premature stop codons represented in this assembly." /pseudo /db_xref="GeneID:511636" exon complement(1312139..1313394) /gene="LOC511636" /locus_tag="BOS_14409" /number=1 /db_xref="GeneID:511636" exon complement(1313533..1314347) /gene="LOC511636" /locus_tag="BOS_14409" /number=2 /db_xref="GeneID:511636" exon complement(1315486..1315801) /gene="LOC511636" /locus_tag="BOS_14409" /number=3 /db_xref="GeneID:511636" exon complement(1319793..1319806) /gene="LOC511636" /locus_tag="BOS_14409" /number=4 /db_xref="GeneID:511636" assembly_gap 1337417..1337516 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(1361230..1387471) /gene="IL18" /locus_tag="BOS_14340" /db_xref="GeneID:281249" mRNA complement(join(1361230..1361474,1364025..1364158, 1364966..1365100,1369160..1369171,1370073..1370159, 1387331..1387471)) /gene="IL18" /locus_tag="BOS_14340" /product="interleukin-18 precursor" /db_xref="GeneID:281249" CDS complement(join(1361253..1361474,1364025..1364158, 1364966..1365100,1369160..1369171,1370073..1370151)) /gene="IL18" /locus_tag="BOS_14340" /note="IL-18; IL-1 gamma; interleukin-1 gamma; IFN-gamma-inducing factor; interferon-gamma-inducing factor; interleukin-18" /codon_start=1 /product="interleukin-18 precursor" /protein_id="DAA22357.1" /db_xref="GI:296480242" /db_xref="GeneID:281249" /translation="MAAEQVEDYCISFVEMKFINNTLYFVAENDEDLESDHFGKLEPK LSIIRNLNDQVLFINQGNQPVFEDMPDSDCSDNAPQTIFIIYMYKDSLTRGLAVTISV QCKKMSTLSCENKIVSFKEMNPPDNIDNEESDIIFFQRSVPGHDDKIQFESSLYKGYF LACKKENDLFKLILKKQDDNRDKSVMFTVQNQN" assembly_gap 1374263..1375087 /estimated_length=825 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1385189..1385441 /estimated_length=253 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 1390651..1395163 /gene="TEX12" /locus_tag="BOS_14350" /db_xref="GeneID:506012" mRNA join(1390651..1390701,1392675..1392753,1393483..1393594, 1393685..1393736,1394498..1395163) /gene="TEX12" /locus_tag="BOS_14350" /product="testis expressed sequence 12" /db_xref="GeneID:506012" CDS join(1392691..1392753,1393483..1393594,1393685..1393736, 1394498..1394642) /gene="TEX12" /locus_tag="BOS_14350" /codon_start=1 /product="testis expressed sequence 12" /protein_id="DAA22367.1" /db_xref="GI:296480252" /db_xref="GeneID:506012" /translation="MMASQLVKPDTRNCKRPRELEPQMPDSPQLSSLGKSDSSLSESS GLFYKDEALEKDLNDMSKEINLMLSTYAKILSERAAVDASYIDEIDGLFKEANTIENF LIQKRELLRQRLTVIANTLHR" gene 1399045..1466750 /gene="BCO2" /locus_tag="BOS_14361" /db_xref="GeneID:514135" mRNA join(1399045..1399196,1402343..1402547,1438345..1438556, 1438771..1438886,1439679..1439781,1445525..1445653, 1447500..1447660,1448576..1448743,1463098..1463235, 1463824..1464006,1464930..1465040,1466134..1466750) /gene="BCO2" /locus_tag="BOS_14361" /product="beta-carotene dioxygenase 2" /db_xref="GeneID:514135" CDS join(1399109..1399196,1402343..1402547,1438345..1438556, 1438771..1438886,1439679..1439781,1445525..1445653, 1447500..1447660,1448576..1448743,1463098..1463235, 1463824..1464006,1464930..1465040,1466134..1466247) /gene="BCO2" /locus_tag="BOS_14361" /codon_start=1 /product="beta-carotene dioxygenase 2" /protein_id="DAA22378.1" /db_xref="GI:296480263" /db_xref="GeneID:514135" /translation="MFSQIFLRSVSDFSTIAVDFLSMILRRIPVLKKYMEKTHQKTVI FGQEKTLPCIAPLLTTVEETPQVISAGVQGHFPEWLSGYLLRVGPGKFEFGKDKYNHW FDGMALLHQFKVEKGTVTYRSKFLQSDTYKANSDRDRIVISEFGTLALPDPCKNVFER FMSKFEKPAITDNTNVNYVLYKGDYYLSTETNFMNKVDIETLEKTEKVNWTKFIAVNG ATAHPHYDPDGTTYNMGNSYGKHGSCYNVIRVPPEKSDPGETIHGAQVICSIASEEGM RPSYYHSFGMTRNYIIFIEQPLKINLWRIISSKIRGKAFSDGISWEPQYNTRFHVVDK HTGQLLPGMYFSKPFVTFHQINAFEDQGCVVIDLCCQDDGGILEVYQLQNLRKTGKEL DQVYNLIARNSPRRFVLPLLGNLNAPEGENLSPLTYSSASAVKQADGKIWCSYENLYP EDLKEEGSIEFPQINYGQFNGKKYQFFYGCGFRHLVGDSLIKVDVVNKTRRVWREDGF YPSEPVFVPVPGASKEDDGVILSVVITPNQNKKNFLLVLDAKNFEELGRAEVPVQMPY GFHGTFVTI" assembly_gap 1431679..1431754 /estimated_length=76 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 1473052..1481202 /gene="PTS" /locus_tag="BOS_14351" /db_xref="GeneID:506860" mRNA join(1473052..1473176,1475937..1476016,1477307..1477329, 1477708..1477764,1480373..1480443,1480615..1481202) /gene="PTS" /locus_tag="BOS_14351" /product="6-pyruvoyl tetrahydrobiopterin synthase" /db_xref="GeneID:506860" CDS join(1473094..1473176,1475937..1476016,1477307..1477329, 1477708..1477764,1480373..1480443,1480615..1480738) /gene="PTS" /locus_tag="BOS_14351" /EC_number="4.2.3.12" /codon_start=1 /product="6-pyruvoyl tetrahydrobiopterin synthase" /protein_id="DAA22368.1" /db_xref="GI:296480253" /db_xref="GeneID:506860" /translation="MNGAGSGPRRRARVSRLVSFSATHRLHSKSLSNEENLKLFGKCN NPNGHGHNYKVVVTVHGEVDPVTGMVMNLTDLKKYMEEAIMKPLDHKNLDLDVPYFAD IVSTTENVAVYIWENLQKFLPVGVLYKVKVYETDNNIVVYKGE" assembly_gap 1503983..1504082 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1505265..1505364 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1515114..1515213 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(1539175..1551283) /gene="PLET1" /locus_tag="BOS_14349" /db_xref="GeneID:505518" mRNA complement(join(1539175..1540140,1542320..1542381, 1546450..1546651,1551063..1551283)) /gene="PLET1" /locus_tag="BOS_14349" /product="placenta-expressed transcript 1 protein precursor" /db_xref="GeneID:505518" CDS complement(join(1539860..1540140,1542320..1542381, 1546450..1546651,1551063..1551246)) /gene="PLET1" /locus_tag="BOS_14349" /inference="similar to AA sequence:RefSeq:NP_001107010.1" /codon_start=1 /product="placenta-expressed transcript 1 protein precursor" /protein_id="DAA22366.1" /db_xref="GI:296480251" /db_xref="GeneID:505518" /translation="MAILRSLLLPLGLLLCLWLLCSPASCTNSTTNCKPFLSVTTKKS SLIHISPDIYKSNTLYTVSTQVSHGIISVVLEARDQNKSVIGSWENPSDHCEGRAEYY LKGNFSTLFKAKWMSPNSTDITTVKINIYTVNSLRNAELDSITLPEVGTVTVKHVSTK QVITTPTHKPTPAPPKPTTNPQKTTTNHSIPTTSLPKPTTSLYTSHPKLTTTHKSSAN RAFLCPVREAIQILFIFLIGTLLF" assembly_gap 1565808..1566354 /estimated_length=547 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1601511..1602008 /estimated_length=498 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1646088..1646251 /estimated_length=164 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 1723661..1723760 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2131337..2131378 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2190819..2190981 /estimated_length=163 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2250772..2251643 /estimated_length=872 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2261337..2261436 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2360508..2360607 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene 2368186..2726558 /gene="NCAM1" /locus_tag="BOS_14345" /db_xref="GeneID:281941" mRNA join(2368186..2368587,2654046..2654120,2655792..2656010, 2658023..2658166,2658562..2658699,2659794..2659911, 2660339..2660505,2672057..2672199,2678547..2678576, 2682730..2682880,2683176..2683360,2683899..2683995, 2684310..2684480,2686545..2686676,2705972..2706096, 2709879..2710056,2720628..2720835,2722439..2722555, 2725782..2726558) /gene="NCAM1" /locus_tag="BOS_14345" /product="neural cell adhesion molecule 1 precursor" /db_xref="GeneID:281941" CDS join(2368536..2368587,2654046..2654120,2655792..2656010, 2658023..2658166,2658562..2658699,2659794..2659911, 2660339..2660505,2672057..2672199,2678547..2678576, 2682730..2682880,2683176..2683360,2683899..2683995, 2684310..2684480,2686545..2686676,2705972..2706096, 2709879..2710056,2720628..2720835,2722439..2722555, 2725782..2725893) /gene="NCAM1" /locus_tag="BOS_14345" /inference="similar to AA sequence:RefSeq:NP_776824.1" /note="cell adhesion molecule, neural; NCAM-1; N-CAM-1" /codon_start=1 /product="neural cell adhesion molecule 1 precursor" /protein_id="DAA22362.1" /db_xref="GI:296480247" /db_xref="GeneID:281941" /translation="MLQTKNLIWTLFFLGTAVSLQVDIVPSQGEISVGESKFFLCQVA GDAKDKDISWFSPNGEKLTPNQQRISVVWNDDSSSTLTIYNANIDDAGIYKCVVTAED GTESEATVNVKIFQKLMFKNAPTPQEFREGEDAVIVCDVVSSLPPTIIWKHKGRDVIL KKDVRFIVLTNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQ SIVNATANLGQSVTLVCNAEGFPEPTVSWTKDGEQIENEEDEKYLFSDDSSELTIRKV DKNDEAEYVCIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDP IPSITWRTSTRNISSEEKASWTRPEKQETLDGHMVVRSHARVSSLTLKSIQYTDAGEY VCTASNTIGQDSQSMYLEVQYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRD GQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAMGEEVWHSKWYDAKEASM EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGN SIKVKLIKQDDGGSPIRHYLVKYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYV VAENQQGKSKAAHFVFRTSAQPTAIPANGSPTSGLSTGAIVGILVVTFVLLLVAVDVT CYFLNKCGLLMCIAVNLCGKAGPGAKGKDMEEGKAAFSKDESKEPIVEVRTEEERTPN HDGGKHTEPNETTPLTEPEKGPVEAKPETETKPAPAEVQTVPNDATQIKENESKA" assembly_gap 2521485..2521575 /estimated_length=91 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2542626..2542725 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2560476..2560575 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2666516..2666896 /estimated_length=381 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2680480..2680626 /estimated_length=147 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2693752..2693851 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene 2770033..2814976 /gene="TTC12" /locus_tag="BOS_14389" /db_xref="GeneID:515758" mRNA join(2770033..2770094,2774795..2774954,2775494..2775515, 2776165..2776242,2777272..2777393,2781658..2781717, 2787067..2787138,2793874..2793934,2794357..2794545, 2796074..2796143,2796906..2796994,2799058..2799226, 2805177..2805269,2806321..2806381,2807390..2807527, 2807982..2808080,2808526..2808594,2811138..2811239, 2812631..2812730,2813503..2813728,2814822..2814976) /gene="TTC12" /locus_tag="BOS_14389" /product="Tetratricopeptide repeat protein 12-like" /db_xref="GeneID:515758" CDS join(2770033..2770094,2774795..2774954,2775494..2775515, 2776165..2776242,2777272..2777393,2781658..2781717, 2787067..2787138,2793874..2793934,2794357..2794545, 2796074..2796143,2796906..2796994,2799058..2799226, 2805177..2805269,2806321..2806381,2807390..2807527, 2807982..2808080,2808526..2808594,2811138..2811239, 2812631..2812730,2813503..2813728,2814822..2814897) /gene="TTC12" /locus_tag="BOS_14389" /codon_start=1 /product="Tetratricopeptide repeat protein 12-like" /protein_id="DAA22404.1" /db_xref="GI:296480289" /db_xref="GeneID:515758" /translation="MADYQEEDLQKFLKNVDEISNLIQEMNSDDPVVREKAVLETEKR LQFTEGGREEDECRTTVNKTVISPPQAPTKDTDEINTEAFLASLEKDAKERAKRRREN KVLADALKEKGNAAFVRGDYETAILCYSEGLEKLKDMKVLYTNRAQAYIKLGDYRKAL VDCDWALKCDEKCTKAYFHMGKAHLALKNYSVSRECYQKILEINPQLQTQVKEYLNQV DLREKADVQEKEAQESLDSGKNSAVTTKNLLETLSKPDQIPLFYAGGIEILTEMMKDC TERTLFRTNNGFNIISENEVIRRCFSTAGKDAVEETVCLSVLRLWQAVCSENEENQRL LVLRPDTGPLLPSLLASRVPAIRQQSLALLLQLAQTENGRSLIIGHLDLIRLLEALVS FLDFSDKKANSAMGLLTDLALQERFQAWFQTSLPDVLPVLTGVLKRDPKVTNISALCQ CLAIMGNFSAEAAAQRQMSASEDFGAACLGLMAKCEEDADLFRDVMYALLGLVMNLCL QSPFVSEVWAMEVSKKCLSLLNSQDGGILTRAAGVLSRTLSSSLKIVEEALRAGVVKK MIKFLKAGGQTASRYAVKILAICTNSYQEAREEVLRLDKKLGVLMQLLDSEDEILVGN AALCLGNCMEVPRAASSLLSTDIVPVLLKLAGSDAQQTAVQLNAGIALGKLCTAEPRF AALLRELHGMEILNSTMKYVESS" gene 2838579..2852378 /gene="ANKK1" /locus_tag="BOS_14410" /note="The sequence of the transcript was modified to remove frameshifts and prevent a premature stop codon represented in this assembly." /pseudo /db_xref="GeneID:785303" exon 2838579..2839207 /gene="ANKK1" /locus_tag="BOS_14410" /number=1 /db_xref="GeneID:785303" exon 2839412..2839501 /gene="ANKK1" /locus_tag="BOS_14410" /number=2 /db_xref="GeneID:785303" exon 2844981..2845290 /gene="ANKK1" /locus_tag="BOS_14410" /number=3 /db_xref="GeneID:785303" exon 2846716..2846876 /gene="ANKK1" /locus_tag="BOS_14410" /number=4 /db_xref="GeneID:785303" exon 2847123..2847167 /gene="ANKK1" /locus_tag="BOS_14410" /number=5 /db_xref="GeneID:785303" exon 2847741..2847900 /gene="ANKK1" /locus_tag="BOS_14410" /number=6 /db_xref="GeneID:785303" exon 2848999..2849148 /gene="ANKK1" /locus_tag="BOS_14410" /number=7 /db_xref="GeneID:785303" exon 2849783..2849813 /gene="ANKK1" /locus_tag="BOS_14410" /number=8 /db_xref="GeneID:785303" exon 2850157..2850162 /gene="ANKK1" /locus_tag="BOS_14410" /number=9 /db_xref="GeneID:785303" exon 2851093..2852378 /gene="ANKK1" /locus_tag="BOS_14410" /number=10 /db_xref="GeneID:785303" gene complement(2864007..2876979) /gene="DRD2" /locus_tag="BOS_14339" /db_xref="GeneID:281126" mRNA complement(join(2864007..2865252,2866129..2866456, 2868011..2868097,2869002..2869192,2870368..2870504, 2871510..2871619,2876692..2876979)) /gene="DRD2" /locus_tag="BOS_14339" /product="d(2) dopamine receptor" /db_xref="GeneID:281126" CDS complement(join(2865059..2865252,2866129..2866456, 2868011..2868097,2869002..2869192,2870368..2870504, 2871510..2871619,2876692..2876976)) /gene="DRD2" /locus_tag="BOS_14339" /inference="similar to AA sequence:RefSeq:NP_776468.1" /exception="annotated by transcript or proteomic data" /note="dopamine D2 receptor" /codon_start=1 /product="d(2) dopamine receptor" /protein_id="DAA22356.1" /db_xref="GI:296480241" /db_xref="GeneID:281126" /translation="MDPLNLSWYDDDPESRNWSRPFNGSEGKADRPPYNYYAMLLTLL IFVIVFGNVLVCMAVSREKALQTTTNYLIVSLAVADLLVATLVMPWVVYLEVVGEWKF SRIHCDIFVTLDVMMCTASILNLCAISIDRYTAVAMPMLYNTRYSSKRRVTVMIAIVW VLSFTISCPMLFGLNNTDQNECIIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIVLRR RRKRVNTKRSSRAFRANLKAPLKGNCTHPEDMKLCTVIMKSNGSFPVNRRRVEAARRA QELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHHGLHSTPDSPAKPEKNGHAKTV NPKIAKIFEIQSMPNGKTRTSLKTMSRRKLSQQKEKKATQMLAIVLGVFIICWLPFFI THILNIHCDCNIPPVLYSAFTWLGYVNSAVNPIIYTTFNIEFRKAFLKILH" assembly_gap 2914979..2915078 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2933578..2933677 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 2994461..2995235 /estimated_length=775 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3060287..3060641 /estimated_length=355 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(3138443..3149682) /gene="TMPRSS5" /locus_tag="BOS_14411" /db_xref="GeneID:615090" mRNA complement(join(3138443..3139077,3140097..3140252, 3140524..3140666,3141075..3141173,3142968..3143146, 3144137..3144299,3144929..3144972,3146229..3146342, 3146685..3146823,3148173..3148292,3148792..3148890, 3149259..3149370,3149569..3149682)) /gene="TMPRSS5" /locus_tag="BOS_14411" /product="transmembrane protease, serine 5-like" /db_xref="GeneID:615090" CDS complement(join(3139069..3139077,3140097..3140252, 3140524..3140666,3141075..3141173,3142968..3143146, 3144137..3144299,3144929..3144972,3146229..3146342, 3146685..3146823,3148173..3148292,3148792..3148890, 3149259..3149370,3149569..3149682)) /gene="TMPRSS5" /locus_tag="BOS_14411" /codon_start=1 /product="transmembrane protease, serine 5-like" /protein_id="DAA22421.1" /db_xref="GI:296480306" /db_xref="GeneID:615090" /translation="MLRGSVDALHADEGAVKSVGFGVSPVEARVSAVPLTGWSPMLDG QAPTEAQDAEEGPGSAEPGDLLRRPETQQQPMSGAGRWCAGRRCWAVLGALGLLAGVG VGSWLLVLYLWPAASQPTPETLQDEMTLNCSEASSEEALLPSIPRTVSFRINTSEDFL LEVQLRARQDWLLVCHEGWSSALGARVCRSLGHLRLTHHKAVNLSDVRLNSSREFAQL SPRLEGFPEEVWQPRDRCASGQIVSLKCSECGARPLASRIVGGQAAAPGRWPWQASVT LGSRHTCGASVLGPRWVVTAAHCTHSFRLSRLSSWRVHAGLVSHSTVRPHQGAVVQRI ITHPLYSAQNHDYDVALLQLRTPLHFSDTVGAVCLPAEERDFPRGSECWVSGWGHTDP GHTRSSDVLQDSVVPLLSTQLCNSSCVYSGALTPRMLCAGYLDGRADACQGDSGGPLV CLDEGTWRLVGVVSWGHGCAEPSHPGVYAKVAEFLDWIQDTAAQVH" gene 3149810..3158255 /gene="LOC787274" /locus_tag="BOS_14412" /note="The sequence of the transcript was modified to remove frameshifts and prevent a premature stop codon represented in this assembly." /pseudo /db_xref="GeneID:787274" exon 3149810..3149820 /gene="LOC787274" /locus_tag="BOS_14412" /number=1 /db_xref="GeneID:787274" exon 3155473..3155567 /gene="LOC787274" /locus_tag="BOS_14412" /number=2 /db_xref="GeneID:787274" exon 3157458..3158255 /gene="LOC787274" /locus_tag="BOS_14412" /number=3 /db_xref="GeneID:787274" assembly_gap 3172271..3172518 /estimated_length=248 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(3177535..3212877) /gene="ZW10" /locus_tag="BOS_14356" /db_xref="GeneID:511084" mRNA complement(join(3177535..3178059,3180849..3181051, 3181818..3181949,3182586..3182716,3183560..3183729, 3186453..3186524,3189221..3189459,3193388..3193570, 3194461..3194624,3202922..3203113,3203542..3203694, 3205170..3205329,3205483..3205560,3205767..3205868, 3210452..3210586,3212768..3212877)) /gene="ZW10" /locus_tag="BOS_14356" /product="centromere/kinetochore protein zw10" /db_xref="GeneID:511084" CDS complement(join(3177939..3178059,3180849..3181051, 3181818..3181949,3182586..3182716,3183560..3183729, 3186453..3186524,3189221..3189459,3193388..3193570, 3194461..3194624,3202922..3203113,3203542..3203694, 3205170..3205329,3205483..3205560,3205767..3205868, 3210452..3210586,3212768..3212872)) /gene="ZW10" /locus_tag="BOS_14356" /codon_start=1 /product="centromere/kinetochore protein zw10" /protein_id="DAA22373.1" /db_xref="GI:296480258" /db_xref="GeneID:511084" /translation="MASFVTEVLAHSGRLEKEDLGTRISRLTQRVEEIKGEVCSMISK KYSEFLPSMQSAQDLVTQVDKLSDDIGLLKSRIETEVRRDLHVSTAEFTDLKQQLERD SVVLCLLRQLQEFSTAIEEYNCALAGKKYISAAQHLEEAQKCLKLLKSRKCFDLKILK SLSMELTIQKQNILYHLGEEWQKLIVWKFPPSKDISNLESCLQTELHLCTEQSQKEEK NPVPPISSVLLAFSLLGELHTKLKSFGQMLLKYILKPLASCPSLLAMIESQPNITIIR FESVMTDLEHPSPSEVFAKIRLVLEVVQKQLLDLPLDADLENLKTSKITLAEMLGDII WEDLSECLIKDCLVYSIPTNSSKLQQYEEIIQSTEEFENALKEMRFLKGDTTDLLKYA RNINSHFANKKCQDVIVAARNLMTSEIHNTVKITPASQISVPDLLRPNEDDKLQVQEV STAQCNEVANLEPENTLDQHSFSLPTCRISESVKKLMELAYQTLLEATTSSDQCAVQL FYSVRNIFHLFHDVVPTYHKENLQKLPQLAAIHHNNCMYIAHHLLTLGHQFRLRLAPI LCDGTTTFVDLVPGFRRLGTECFLAQMRAQKGELLERLSSARNFSNMDDEDNYSAASK AVRQVLHQLKRLGVVWQDVLPVNIYCKAMGTLLNTAVSEIIGRITALEDISTEDADRL YSLCKTVVDEGPQVFAPLSEENENKKYREEVPVYVSKWMPFKELMMMLQASLQEIGDR WADGKGPLATAFSSSEVKALIRALFQNTERRAATLAKIK" assembly_gap 3200502..3200601 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene 3221648..3222340 /gene="LOC522679" /locus_tag="BOS_14390" /db_xref="GeneID:522679" mRNA 3221648..3222340 /gene="LOC522679" /locus_tag="BOS_14390" /product="claudin 25-like" /db_xref="GeneID:522679" CDS 3221648..3222340 /gene="LOC522679" /locus_tag="BOS_14390" /codon_start=1 /product="claudin 25-like" /protein_id="DAA22405.1" /db_xref="GI:296480290" /db_xref="GeneID:522679" /translation="MSWSFHGKIQLGGLLLSLLGCICLCVTTILPRWKTLSLELNEME TWTMGLWEVCVDQEEVATVCKAFESFLSLPQELQASRILMVASHGLGLMGLLLSGFGA ECFQFHRIRRVLKRRLCLLGGTLEASAAATTLLPVSWVAYATIQDFWDDSIPEIVPRW EFGDAFYLGWASGVFLALGGLLLVFSACLGKEDVTFPHMAVPTTAPPSCAPAEVSDGS FYLMPRPRTLLI" gene complement(3229749..3293916) /gene="USP28" /locus_tag="BOS_14391" /db_xref="GeneID:508902" mRNA complement(join(3229749..3230978,3232087..3232282, 3233706..3233829,3234363..3234442,3235852..3235930, 3236027..3236205,3236898..3236993,3238305..3238444, 3239034..3239228,3241215..3241443,3242293..3242363, 3243181..3243401,3245717..3245896,3250056..3250151, 3252895..3253022,3255025..3255173,3256333..3256409, 3257311..3257384,3258266..3258403,3259102..3259188, 3262428..3262587,3263514..3263619,3273218..3273347, 3274283..3274360,3293829..3293916)) /gene="USP28" /locus_tag="BOS_14391" /product="ubiquitin specific peptidase 28" /db_xref="GeneID:508902" CDS complement(join(3230803..3230978,3232087..3232282, 3233706..3233829,3234363..3234442,3235852..3235930, 3236027..3236205,3236898..3236993,3238305..3238444, 3239034..3239228,3241215..3241443,3242293..3242363, 3243181..3243401,3245717..3245896,3250056..3250151, 3252895..3253022,3255025..3255173,3256333..3256409, 3257311..3257384,3258266..3258403,3259102..3259188, 3262428..3262587,3263514..3263619,3273218..3273347, 3274283..3274360,3293829..3293885)) /gene="USP28" /locus_tag="BOS_14391" /codon_start=1 /product="ubiquitin specific peptidase 28" /protein_id="DAA22406.1" /db_xref="GI:296480291" /db_xref="GeneID:508902" /translation="MTAELQQDDAAGATDRHGSSCQMLLNQLREITGIQDPSFLHEAL KASNGDITQAVSLLTDERVKEPSQETAAEPSEEEGSAASKEELAKVIDLTHDSKDDLQ AAIALSLLESPKIQADGRDLNRMHEATSAETKRSKRKRCEVWGENPNPNDWRRVDGWP VGLKNVGNTCWFSAVIQSLFQLPEFRRLVLSYSLPQNVLENCPSHTEKRNIVFMQELQ YLFALMMGSNRKFVDPSAALDLLKGAFRSPEEQQQDVSEFTHKLLDWLEDAFQLAVNV NNPRNKSENPMVQLFYGTFLTEGIREGKPFCNNETFGQYPLQVNGYRNLDECLEGAMV EGDIELLPSDHSVKYGQERWFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQIIY MDRYMYRSKELVRSKRDCIRKLKEEIKILQQKLERYVKYGSGPARFPLPDMLKYVIEF ASTKPASESSASQSDACMTEPLSSAHCLTSDLTSKESTSEESTSQEAEGTFSSSEDSG RKSRMAEQPLKPPRSSVEMPAHPAPRTVTDEEINFVKTCLQRWRNEIEQDIQDLKNSI ASTTQTIEQMYCDPLLRQVPYRLHAVLVHEGQANAGHYWAYVYNQPRQVWLKYNDISV TESSWEELERDSYGGQRNVSAYCLMYINDKLPHFNAEAAPNELDQMSGEVEALSVELK HYIQEDNWRFEQEVEEWEEEQSCKIPQMASSTSSASQDFSPSQESSVASSHGARCLSS EHAVIVKEQTAQAIANTAHAYENSGVEAALSEVMLSPAMQGVILAIAKARQTFDRDGS EAGLIKAFHEEYSRLYQLAKETPTSHSDPRLQHVLIYFFQNEAPKRVVERTLLEQFAD KNLSYDERSISIMKVAQAKLKEIGPDDMNMEEYKKWHEDYSLFRKVSVYLLTGLELYQ KGKYQEALSYLVYAYQSNATLLMKGPQRGVKESVIALYRRKCLLELNAKAASLFETND EHSVTEGINVMNELIIPCIHLIINNDISKDDLDAIEVMRNHWCSYLGQDIAENLQLCL GEFLPRLLDPSAEIIVLKEPPTIRPNSPYDLCSRFAAVMESIQGVSAVTVK" assembly_gap 3281603..3282313 /estimated_length=711 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 3334880..3376655 /gene="HTR3B" /locus_tag="BOS_14413" /db_xref="GeneID:541055" mRNA join(3334880..3334919,3340873..3341033,3359604..3359648, 3360115..3360224,3362580..3362749,3363259..3363416, 3374213..3374423,3374811..3374993,3376423..3376655) /gene="HTR3B" /locus_tag="BOS_14413" /product="5-hydroxytryptamine (serotonin) receptor 3B" /db_xref="GeneID:541055" CDS join(3334880..3334919,3340873..3341033,3359604..3359648, 3360115..3360224,3362580..3362749,3363259..3363416, 3374213..3374423,3374811..3374993,3376423..3376655) /gene="HTR3B" /locus_tag="BOS_14413" /codon_start=1 /product="5-hydroxytryptamine (serotonin) receptor 3B" /protein_id="DAA22422.1" /db_xref="GI:296480307" /db_xref="GeneID:541055" /translation="MAPLWPFVLAAASGILAIGMPHSRSPALHHLTKQLLQTYRKEVR PVHNWTQATTVYLDVSVHAVLDVDTQNQKLKTSIWYREVWDDEFLSWNSSMFDEIREI SLPLSAIWAPDIIINEYVDIERSPDLPYVYVNSSGTIKHSKPIQVVSACNLETYAFPF DVQNCSLTFSSILHTVEDVDLAFLRSTEDITHDQKAFLNDSEWELLSVSSTYSILQNS AGDFAQIQFNVVIRRHPLVYVVSLLIPSIFLMLVDLGSFYLPPTCQARILFKTSVLVG YTVFRVNMSDEVPRSAGSTPLIGVFFTVCMAFLVLSLSKSILLVKFLYDERCSQQEQT LLCLRGDMDTNQRQMDPGAQLAGVTESPVCQEDQAPSGTLKEVWSQLRSISSYFQTQD QVDRQELGWLALLERFDRLLFQSYLIVLGLYAVTLCSLWVSWSG" assembly_gap 3351628..3352096 /estimated_length=469 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 3399672..3412500 /gene="HTR3A" /locus_tag="BOS_14392" /db_xref="GeneID:617674" mRNA join(3399672..3399741,3402001..3402167,3403552..3403596, 3404724..3404833,3406248..3406417,3409211..3409371, 3409679..3409889,3409992..3410213,3412202..3412500) /gene="HTR3A" /locus_tag="BOS_14392" /product="5-hydroxytryptamine (serotonin) receptor 3A" /db_xref="GeneID:617674" CDS join(3399672..3399741,3402001..3402167,3403552..3403596, 3404724..3404833,3406248..3406417,3409211..3409371, 3409679..3409889,3409992..3410213,3412202..3412500) /gene="HTR3A" /locus_tag="BOS_14392" /codon_start=1 /product="5-hydroxytryptamine (serotonin) receptor 3A" /protein_id="DAA22407.1" /db_xref="GI:296480292" /db_xref="GeneID:617674" /translation="MLPWLPRALLGLLLPTLLAPWGEAKHRGDPQPPNASRPALLRLS DHLLANYKKGVRPVRDWRTPTTVSIDVIVYAILSVDEKNQVLTTYIWYRQYWTDEFLQ WDPEDFDNITKLSIPTDSIWVPDILINEFVDVGKSPNIPYVYVRHHGEVQNYKPLQVM TACTLDIYNFPFDIQNCSLTFTSWLHTIQDINISLWRLPEKVKFDRSVFMNQGEWELL GVLTQFQEFSIESSDSYAEMKFYVVIRRRPLFYAVSLLLPSIFLMVVDIVGFYLPPDS GERVSFKITLLLGYSVFLIIVSDTLPATAIGTPLIGVYFVVCMALLVISLAETILIVR LVHKQDLQQPVPAWLRHLVLERVTLLLCLGDQSTARRPAATSQAAKTDDCSDMGNHYS HLGGPRDLEKTPRGRGSPPPPPREASLAVRGLLQELTSIRHFLEKREGSREVARDWLR VGSVLDRLLFRIYLLAVLAYSITLVTLWSIWQYS" assembly_gap 3422237..3422336 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3423593..3423692 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3431923..3432022 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3462021..3462059 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(3477929..3482102) /gene="LOC100337344" /locus_tag="BOS_14414" /db_xref="GeneID:100337344" mRNA complement(join(3477929..3478099,3481570..3482102)) /gene="LOC100337344" /locus_tag="BOS_14414" /product="hypothetical protein" /db_xref="GeneID:100337344" CDS complement(join(3477929..3478099,3481570..3481632)) /gene="LOC100337344" /locus_tag="BOS_14414" /codon_start=1 /product="hypothetical protein" /protein_id="DAA22423.1" /db_xref="GI:296480308" /db_xref="GeneID:100337344" /translation="MMTTSHSVPASLIWLALHRSPPGAVGWVCVPLGGVCLCLGGVLL GNCCSRYHGGSGGIARQFAVPALIALNSSVLRG" gene <3477938..>3677155 /gene="ZBTB16" /locus_tag="BOS_14369" /db_xref="GeneID:534401" mRNA join(<3477938..3478109,3481427..3482784,3575325..3575422, 3610582..3610668,3668927..3669097,3674276..3674443, 3676805..>3677155) /gene="ZBTB16" /locus_tag="BOS_14369" /product="promyelocytic leukemia zinc finger protein" /db_xref="GeneID:534401" CDS join(3481517..3482784,3575325..3575422,3610582..3610668, 3668927..3669097,3674276..3674443,3676805..3677034) /gene="ZBTB16" /locus_tag="BOS_14369" /codon_start=1 /product="promyelocytic leukemia zinc finger protein" /protein_id="DAA22386.1" /db_xref="GI:296480271" /db_xref="GeneID:534401" /translation="MDLTKMGMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQE FHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDL LYAAEILEIEYLEEQCLKILETIQASDDNDTEATMAEGGAEEEEDRKARYLKNIFISK HSSEESGYASVAAQSLPGPMVDQSPSVSTSFGLSAMSPTKAAVDSLMTIGQSLLQGAL QPPAGPEEPTLAGGGRHPAVAEVKPEMMQVDEVPGQESPGTVESSISAGMGDKVEERG KEGPGTPTRSSVITSARELHYGREESTEQLPPPVEAGQGPPGRLEPPAHPAEKHLGLY SVLPNHKADAVLSMPSSVTSGLHVQPALAVSMDFSTYGGLLPQGFIQRELFSKLGELA VGMKAESRSVGEQCSVCGVELPDNEAVEQHRKLHSGMKTYGCELCGKRFLDSLRLRMH LLAHSAGAKAFVCDQCGAQFSKEEALETHRQTHTGTDMAVFCLLCGKRFQAQSALQQH MEVHAGVRSYICSECNRTFPSHTALKRHLRSHTGDHPYECEFCGSCFRDESTLKSHKR IHTGEKPYECNGCGKKFSLKHQLETHYRVHTGEKPFECKLCHQRSRDYSAMIKHLRTH NGASPYQCTICSEYCPSLSSMQKHMKGHKPEEIPPDWRIEKTYLYLCYV" assembly_gap 3625437..3625536 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 3627181..3627280 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene 3703714..3708772 /gene="LOC511161" /locus_tag="BOS_14415" /db_xref="GeneID:511161" mRNA join(3703714..3703981,3706517..3706724,3708340..3708772) /gene="LOC511161" /locus_tag="BOS_14415" /product="Nicotinamide N-methyltransferase-like" /db_xref="GeneID:511161" CDS join(3703831..3703981,3706517..3706724,3708340..3708772) /gene="LOC511161" /locus_tag="BOS_14415" /codon_start=1 /product="Nicotinamide N-methyltransferase-like" /protein_id="DAA22424.1" /db_xref="GI:296480309" /db_xref="GeneID:511161" /translation="MALQERQEPDVYQENFEPTSYLEYYRMNQDPVGDEVLHFLLKHY NATFKPGGLEGKLLIDIGSGPTIYQFLSACESFQEIIATDYTDKNLQELEKWLKKMPG AFDWSPVVKYVCELEGNRDKWAEKEERVRRAVTQVLKCDVLKERPLEPAVLPPADGLI SSLCLEAACPTPQACRDALRHLRTLLRPGGHLVLSGGFETTFFMVGDKRFSTLPLNEK FLREALQEAGFIIEKLEKVTRAAETHLDNRSDYTGLFFLVARRGD" gene 3729588..3743178 /gene="LOC782610" /locus_tag="BOS_14416" /note="The sequence of the transcript was modified to remove a frameshift represented in this assembly." /pseudo /db_xref="GeneID:782610" exon 3729588..3729613 /gene="LOC782610" /locus_tag="BOS_14416" /number=1 /db_xref="GeneID:782610" exon 3742750..3743178 /gene="LOC782610" /locus_tag="BOS_14416" /number=2 /db_xref="GeneID:782610" assembly_gap 3779877..3780405 /estimated_length=529 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<3816192..>3817016) /gene="C15H11orf71" /locus_tag="BOS_14378" /db_xref="GeneID:615529" mRNA complement(<3816192..>3817016) /gene="C15H11orf71" /locus_tag="BOS_14378" /product="hypothetical protein LOC615529" /db_xref="GeneID:615529" CDS complement(3816250..3816648) /gene="C15H11orf71" /locus_tag="BOS_14378" /codon_start=1 /product="hypothetical protein LOC615529" /protein_id="DAA22395.1" /db_xref="GI:296480280" /db_xref="GeneID:615529" /translation="MAQNSVSLSAGDRRSRVAYLSSSHGDLSSSALALAMVSGDSFLV TRPEAILPEPVPRSSVRLNFRTESRRAPGGGRSPTRFNEGREMEARSRSRQARFSPYP GPAVKLDLLRSVLQQRLVALGGVIVARLSA" gene 3816971..3824262 /gene="RBM7" /locus_tag="BOS_14362" /db_xref="GeneID:515307" mRNA join(3816971..3817073,3817974..3818136,3818808..3818895, 3821845..3821926,3822819..3824262) /gene="RBM7" /locus_tag="BOS_14362" /product="RNA-binding protein 7" /db_xref="GeneID:515307" CDS join(3816978..3817073,3817974..3818136,3818808..3818895, 3821845..3821926,3822819..3823178) /gene="RBM7" /locus_tag="BOS_14362" /note="RNA-binding motif protein 7" /codon_start=1 /product="RNA-binding protein 7" /protein_id="DAA22379.1" /db_xref="GI:296480264" /db_xref="GeneID:515307" /translation="MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKD KDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRAGSSHASQEVSLSYPQH HVGNSSPTSTSPSRTVDNMTPSAQTIQRSFSSSENFQRQAVMNNVLRQMSYGGKFGSP HLDQSGFSPSAQSHNHTFNQSSSSQWRQDTPSSQRKVRLNSHPYVMDRHYSREQRYSD LSDHHYRGNRDDFFYEDRNHDGWSHDYDNRRDSGRNGKWRSSRH" gene <3854104..>3864857 /gene="REXO2" /locus_tag="BOS_14375" /db_xref="GeneID:540139" mRNA join(<3854104..3854312,3855336..3855419,3859062..3859139, 3859749..3859860,3861183..3861291,3862474..3862527, 3864420..>3864857) /gene="REXO2" /locus_tag="BOS_14375" /product="oligoribonuclease, mitochondrial precursor" /db_xref="GeneID:540139" CDS join(3854166..3854312,3855336..3855419,3859062..3859139, 3859749..3859860,3861183..3861291,3862474..3862527, 3864420..3864549) /gene="REXO2" /locus_tag="BOS_14375" /note="small fragment nuclease; RNA exonuclease 2 homolog; oligoribonuclease, mitochondrial" /codon_start=1 /product="oligoribonuclease, mitochondrial precursor" /protein_id="DAA22392.1" /db_xref="GI:296480277" /db_xref="GeneID:540139" /translation="MLGGSLGSRLLRGVGGTRGQFRARGVREGGAAMAAGESMAQRMV WVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHG KSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMK HLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIKELQFYRNNIFKKK TDEKKRKIIENGENEKTVS" gene complement(3874421..3874903) /gene="LOC781913" /locus_tag="BOS_14393" /note="The sequence of the transcript was modified to prevent a premature stop codon represented in this assembly." /pseudo /db_xref="GeneID:781913" exon complement(3874421..3874903) /gene="LOC781913" /locus_tag="BOS_14393" /number=1 /db_xref="GeneID:781913" assembly_gap 3914638..3915026 /estimated_length=389 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(3927643..3939909) /gene="LOC782499" /locus_tag="BOS_14417" /note="The sequence of the transcript was modified to remove frameshifts and prevent premature stop codons represented in this assembly." /pseudo /db_xref="GeneID:782499" exon complement(3927643..3927768) /gene="LOC782499" /locus_tag="BOS_14417" /number=1 /db_xref="GeneID:782499" exon complement(3927823..3927945) /gene="LOC782499" /locus_tag="BOS_14417" /number=2 /db_xref="GeneID:782499" exon complement(3930482..3930584) /gene="LOC782499" /locus_tag="BOS_14417" /number=3 /db_xref="GeneID:782499" exon complement(3930616..3930696) /gene="LOC782499" /locus_tag="BOS_14417" /number=4 /db_xref="GeneID:782499" exon complement(3937961..3938636) /gene="LOC782499" /locus_tag="BOS_14417" /number=5 /db_xref="GeneID:782499" exon complement(3939801..3939909) /gene="LOC782499" /locus_tag="BOS_14417" /number=6 /db_xref="GeneID:782499" gene complement(<3980008..>3994854) /gene="MGC127492" /locus_tag="BOS_14363" /db_xref="GeneID:515648" mRNA complement(join(<3980008..3981258,3984105..3984314, 3986045..3986106,3986631..3987361,3994747..>3994854)) /gene="MGC127492" /locus_tag="BOS_14363" /product="hypothetical protein LOC515648" /db_xref="GeneID:515648" CDS complement(join(3980723..3981258,3984105..3984314, 3986045..3986106,3986631..3987361,3994747..3994776)) /gene="MGC127492" /locus_tag="BOS_14363" /inference="similar to AA sequence:RefSeq:NP_001029675.1" /codon_start=1 /product="hypothetical protein LOC515648" /protein_id="DAA22380.1" /db_xref="GI:296480265" /db_xref="GeneID:515648" /translation="MELCKVFKLELRTALKLPFSLHHWNFVMKTQPEPPPNPIVSPTE TALRIQRIMEKLDQLVPPRPFTNVSSTTSATHSRATVLSPRDTYCRGDRLDVLLEMRD HLGRRKEYGGDFLRARMSSPALKAGASGKVTDFNNGTYLVSFTLFWEGQVSLSVLLIH PSEGVSALWRARNQGYDRVIFTGQFNRGTSQVNTDCALALNSSAELCEYLDTRDQEAF YCVKPPNVPCAALTHMHSKNKDVSYLSKQERSLFERSNVGVEMMAKFNAITVSKCHSE KTVPVKRQCKFGMASTIPSGHVWKDTWNPVSCSLAAIEMKECLRGKFIYLLGDSTIRQ WMEYFKSSINTLKSVDLHESGKLQKQLAVDLNENINIQWQRHSYPLIGSLTYSVKEIE YIAQVIDRIGGEKNTIIVISLGQHFRPFPIDVFIRRALNIHDAVQRLLLRSPETVVII KAENIREMNVDVERFSDFHGYIQYLALKDIFQDLNVGIIDAWDITIAYGTNNVHPPQS VVRNQINILLNFIC" assembly_gap 3988981..3989080 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene 4045675..4085662 /gene="LOC782358" /locus_tag="BOS_14394" /db_xref="GeneID:782358" mRNA join(4045675..4045742,4046778..4046883,4076374..4077107, 4082015..4082076,4084530..4084745,4085127..4085662) /gene="LOC782358" /locus_tag="BOS_14394" /product="hypothetical protein" /db_xref="GeneID:782358" CDS join(4045717..4045742,4046778..4046883,4076374..4077107, 4082015..4082076,4084530..4084745,4085127..4085662) /gene="LOC782358" /locus_tag="BOS_14394" /codon_start=1 /product="hypothetical protein" /protein_id="DAA22408.1" /db_xref="GI:296480293" /db_xref="GeneID:782358" /translation="MMEKTFIHRLLALFPNAIAHKLLLMWMFILAFWVISFSLKDHTK FLFSLRNSISLNHWNIFRNSTYLEAPPNPEISPTETELRIQRIMEKLDQLVPPRPFTN VSSTTSATHSRATVLSPRDTYCRGDRLDVLLEMRDHLGRRKEYGGDFLRARIFSPGLK AGASGKVTDFSNGTYLVSFTLFWEGQVSLSVLLIHPSEGVSALWRARNQGYDRVNFTG QFANGPSPVFSKCGLTLHTSAELCEYLDDRDQEAFYCLKPPRVPCEALTHVTTRSANI SYIRQKEWALFHRSNVGVEMMKNFASIKVLACGKSKNIEAKCRLGMKSPFPSGYTVKR KWIAAFCKQIELNETKTINDCLKRKLIYLMGDSTLRQWIQYLPKMVKTLKDFDLHGVG PFKTHMLLDAERHTLIQWKKHGHPFVTQSLFSVKDDNYIPREIDRIAGDKDTAIVITL GQHLRPFPIKIFIRRAINVQKAIERLFLRSPETKVILKTENTRRMFDNAEMFSDFHGY IQNLIMRDIFMDLNVGIIDAWDMTIADSTNNIHPPDYVIENQINMFLNYIC" assembly_gap 4066956..4067509 /estimated_length=554 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4068675..4068859 /estimated_length=185 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4115766..4115865 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(4116281..4117202) /gene="LOC510786" /locus_tag="BOS_14418" /note="The sequence of the transcript was modified to remove a frameshift and prevent a premature stop codon represented in this assembly." /pseudo /db_xref="GeneID:510786" exon complement(4116281..4117202) /gene="LOC510786" /locus_tag="BOS_14418" /number=1 /db_xref="GeneID:510786" assembly_gap 4135385..4135484 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4138400..4138410 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4143737..4143954 /estimated_length=218 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4155727..4156107 /estimated_length=381 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4158080..4158179 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4159176..4159275 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4160237..4160336 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4161231..4161330 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4286764..4286885 /estimated_length=122 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4323922..4324718 /estimated_length=797 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4336008..4336107 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4397095..4397194 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4511647..4511746 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4533068..4533167 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4543528..4543625 /estimated_length=98 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4589222..4589321 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<4662138..>5012335) /gene="CADM1" /locus_tag="BOS_14368" /db_xref="GeneID:529873" mRNA complement(join(<4662138..4662334,4664367..4664498, 4699665..4699837,4703013..4703112,4715992..4716150, 4718600..4718737,4726371..4726523,4728107..4728253, 5012182..>5012335)) /gene="CADM1" /locus_tag="BOS_14368" /product="cell adhesion molecule 1" /db_xref="GeneID:529873" CDS complement(join(4662216..4662334,4664367..4664498, 4699665..4699837,4703013..4703112,4715992..4716150, 4718600..4718737,4726371..4726523,4728107..4728253, 5012182..5012314)) /gene="CADM1" /locus_tag="BOS_14368" /note="immunoglobulin superfamily, member 4" /codon_start=1 /product="cell adhesion molecule 1" /protein_id="DAA22385.1" /db_xref="GI:296480270" /db_xref="GeneID:529873" /translation="MASAVLPSGPQCAAAAAAAAAAAPPGLRLRLLLLLLSAAALIPT GDGQNLFTKDVTVIEGEVATISCQVNKSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQL LNFSSSELKVSLTNVSISDEGRYFCQLYTDPPQESYTTITVLVPPRNLMIDIQKDTAV EGEEIEVNCTAMASKPATTIRWFKGSKELKGKSEVEEWSDMYTVTSQLMLKVHKEDDG VPVICQVEHPAVTGNLQTQRYLEVQYKPQVHIQMTYPLQGLTREGDALELTCEAIGKP QPVMVTWVRVDDEMPQHAVLSGPNLFINNLNKTDNGTYRCEASNIVGKAHSDYMLYVY DSRAGEEGAIRAVDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDA ADADTAIINAEGGQNNSEEKKEYFI" assembly_gap 4834072..4834325 /estimated_length=254 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4866176..4866596 /estimated_length=421 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 4945635..4945713 /estimated_length=79 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5123904..5124003 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5126922..5127021 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5130814..5130913 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5134723..5134822 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5136362..5136461 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5139653..5139752 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5141831..5141930 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5145720..5145819 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5147334..5147433 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5148730..5148829 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5152607..5152706 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5156312..5156411 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5157647..5157746 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5161022..5161121 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5162241..5162340 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5165524..5165623 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5182955..5183054 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5187288..5187643 /estimated_length=356 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5239049..5239148 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5273323..5273399 /estimated_length=77 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5286304..5286403 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5357621..5357720 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5360515..5360614 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5414097..5414196 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5488479..5489377 /estimated_length=899 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5490387..5490486 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5491473..5491572 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5492560..5492659 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5733435..5733754 /estimated_length=320 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5775286..5775896 /estimated_length=611 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5793767..5794024 /estimated_length=258 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5796794..5797612 /estimated_length=819 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5839286..5839374 /estimated_length=89 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5852671..5853147 /estimated_length=477 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5890225..5890465 /estimated_length=241 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5896661..5897326 /estimated_length=666 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5909989..5910351 /estimated_length=363 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 5986985..5987084 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 6014790..6014916 /estimated_length=127 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 6027240..6027481 /estimated_length=242 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 6072900..6072999 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(6394816..6419462) /gene="BUD13" /locus_tag="BOS_14354" /db_xref="GeneID:510313" mRNA complement(join(6394816..6395222,6406427..6406508, 6406751..6406935,6407253..6407391,6407753..6407858, 6409712..6410010,6411628..6412356,6415430..6415514, 6417335..6417428,6419310..6419462)) /gene="BUD13" /locus_tag="BOS_14354" /product="BUD13 homolog" /db_xref="GeneID:510313" CDS complement(join(6395129..6395222,6406427..6406508, 6406751..6406935,6407253..6407391,6407753..6407858, 6409712..6410010,6411628..6412356,6415430..6415514, 6417335..6417428,6419310..6419452)) /gene="BUD13" /locus_tag="BOS_14354" /codon_start=1 /product="BUD13 homolog" /protein_id="DAA22371.1" /db_xref="GI:296480256" /db_xref="GeneID:510313" /translation="MAAAPPLSKAEYLKRYLSGADGGVDGGPESGRKRRKKRPKPSGA GGKGMRIVDDDVSWTSISTTKAEKEEEEDDGDLPVVAEFVDERPEEVKQMEAFRSSAK WKLLGSHSEDTPSHRQFCHDTPDSSPPRKVRHDTPDPSSPRRVRHDTPDPSPPRRVRH DTPDPSPPRKVRHDTPDSSPPRKARHDTPDSSPPRKIRHDTLDSAPPRKVRHDTPDPS PPRRTRHDTPDSSPPRRTYHSSSDLSPARRARNCSPDTAQPRRTLDSVDRSQLRKAHH NSSDLAANVPHSLPRTKSSEAPESSSKTSPHCKGPGPSHPSLPKNSKYEYDSDLSPSR KKQATSHVGNKQHDSKGSSPTHRKHHTGSPPRKHHTLDSSSYPGDSRKTSDSDLSPPR HKQSSGPQDSDSDLSPPRNRPRHRSSDSDLSPPRRKQRAKSSDSDLSPPRRSQPLGKK AAHMYSGAKTGLVLTDIQREQQELKKRDQETMAFEAEFQHAETVFRDKSGRKRNLKLE RLEQRRKAEKDSKREELYAQWGKGLAQTRQQQQNVEDAMKEMQKPLARYIDDEDLDRM LREQEREGDPMANFIKKNKAKENKNKKVRPRYSGPAPPPNRFNIWPGYRWDGVDRSNG FEQKRFARLASKKAVEELAYKWSVEDM" gene complement(6421654..6430400) /gene="ZNF259" /locus_tag="BOS_14348" /db_xref="GeneID:504523" mRNA complement(join(6421654..6422025,6422815..6422880, 6424514..6424600,6425281..6425391,6425859..6425948, 6426641..6426711,6427122..6427188,6427365..6427412, 6427635..6427757,6427904..6427990,6428933..6429003, 6429375..6429465,6429856..6430017,6430201..6430400)) /gene="ZNF259" /locus_tag="BOS_14348" /product="zinc finger protein ZPR1" /db_xref="GeneID:504523" CDS complement(join(6421891..6422025,6422815..6422880, 6424514..6424600,6425281..6425391,6425859..6425948, 6426641..6426711,6427122..6427188,6427365..6427412, 6427635..6427757,6427904..6427990,6428933..6429003, 6429375..6429465,6429856..6430017,6430201..6430371)) /gene="ZNF259" /locus_tag="BOS_14348" /codon_start=1 /product="zinc finger protein ZPR1" /protein_id="DAA22365.1" /db_xref="GI:296480250" /db_xref="GeneID:504523" /translation="MSAGGAVEPGLPAAAAAPSAAPARDPGPGHLFRPISAEDEEQQP TEIESLCMNCYRNGMTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVR YTLTVRAQEDMDREVVKTDSATTRIPELDFEIPAFSQKGALTTVEGLISRAISGLEQD QPTRRANEEAVAERIDEFIAKLKELKQVASPFTLIIDDPSGNSFVENPHAPRKDDALV ITHYNRTLQQEEMLGLQAEAPEEKPEEEDIRNEVLQFNTNCPECNAPAQTNMKLVQIP HFKEVIIMATNCENCGHRTNEVKSGGAVEPLGTRITFHITDPSDMTRDLLKSETCSVE IPELEFELGMAVLGGKFTTLEGMLKDIRELVTKNPFTLGDSSSPGQTEKLQEFSQKLD QILEGILKAHFIMDDPAGNSYLQNVYAPEDDPEMKVEHYKRTFDQNEELGLNDMKTEG YETGLPAQR" gene complement(<6432474..>6435138) /gene="APOA5" /locus_tag="BOS_14373" /db_xref="GeneID:538914" mRNA complement(join(<6432474..6433627,6434330..6434435, 6434557..6434613,6435127..>6435138)) /gene="APOA5" /locus_tag="BOS_14373" /product="apolipoprotein A-V" /db_xref="GeneID:538914" CDS complement(join(6432676..6433627,6434330..6434435, 6434557..6434605)) /gene="APOA5" /locus_tag="BOS_14373" /codon_start=1 /product="apolipoprotein A-V" /protein_id="DAA22390.1" /db_xref="GI:296480275" /db_xref="GeneID:538914" /translation="MASVAAFLTWALALLSLLSPTEARRGFWDYFSQSSGDKGKVEQQ QKLAREPTSLKERLEPDLSDMDKFLEKLGPLNGQGREIPRLPRDPVGMWQQLQEELEE VRARLEPYMAEVHERVGWNLEGLRRQLQPYTVELMEQVALRVHELQEQLRVVGEGTKA QFLGGVDEARGLLQELQNRVAHHTGRVKALFHPYAERLVSGIGHHVQELHRSVAPHAI ASPARLSRCVQMLSSKLTLKAKALHERIQQNLDQLREELSAFAGARGDDAEEAAQPDP QVLSQEVRQRLQAFRQDTFRQIAAFTHAIDRETEQVQQQLAPPPPGHSAFAPEFLQAD RGKARGELQARFDDLWEDINYSLRDHSPGYRGEP" gene complement(6444814..6452523) /gene="LOC786851" /locus_tag="BOS_14419" /note="The sequence of the transcript was modified to remove frameshifts and prevent a premature stop codon represented in this assembly." /pseudo /db_xref="GeneID:786851" exon complement(6444814..6445689) /gene="LOC786851" /locus_tag="BOS_14419" /number=1 /db_xref="GeneID:786851" exon complement(6452488..6452523) /gene="LOC786851" /locus_tag="BOS_14419" /number=2 /db_xref="GeneID:786851" gene complement(<6467403..>6470175) /gene="APOA4" /locus_tag="BOS_14370" /db_xref="GeneID:537301" mRNA complement(join(<6467403..6468526,6469526..6469652, 6470017..>6470175)) /gene="APOA4" /locus_tag="BOS_14370" /product="apolipoprotein A-IV precursor" /db_xref="GeneID:537301" CDS complement(join(6467560..6468526,6469526..6469652, 6470017..6470065)) /gene="APOA4" /locus_tag="BOS_14370" /inference="similar to AA sequence:RefSeq:NP_001032557.1" /note="apo-AIV; apoA-IV" /codon_start=1 /product="apolipoprotein A-IV precursor" /protein_id="DAA22387.1" /db_xref="GI:296480272" /db_xref="GeneID:537301" /translation="MFLKAVVLSLALVAVTGAEAEVNADQVATVIWDYFSQLGNNAKK AVEHIQKSELTQQLNTLFQDKLGEVSTYTDDLQKKLVPFATELHERLTKDSEKLKEEI RKELEDLRARLLPHATEVSQKIGDNVRELQQRLGPYAEELRTQVDTQAQQLRRQLTPY AERMEKVMRQNLDQLQASLAPYAEELQATVNQRVEELKGRLTPYADQLQTKIEENVEE LRRSLAPYAQDVQGKLNHQLEGLAFQMKKHAEELKAKISAKAEELRQGLVPLVNSVHG SQLGNAEDLQKSLAELSSRLDQQVEDFRRTVGPYGETFNKAMVQQLDTLRQKLGPLAG DVEDHLSFLEKDLRDKVSSFFNTLKEKESQAPALPAQEEMPVPLGG" gene 6475485..6478075 /gene="ApoC3" /locus_tag="BOS_14347" /db_xref="GeneID:408009" mRNA join(6475485..6475518,6476127..6476194,6476343..6476466, 6477776..6478075) /gene="ApoC3" /locus_tag="BOS_14347" /product="apolipoprotein C-III precursor" /db_xref="GeneID:408009" CDS join(6476140..6476194,6476343..6476466,6477776..6477887) /gene="ApoC3" /locus_tag="BOS_14347" /note="apo-CIII; apoC-III" /codon_start=1 /product="apolipoprotein C-III precursor" /protein_id="DAA22364.1" /db_xref="GI:296480249" /db_xref="GeneID:408009" /translation="MQPRLLLLAAFLALLVLPEATKAEEGSLLDKMQGYVKEATKTAK DALSSVQESQVAQQARDWMTESFSSLKDYWSSFKGKFTDFWESATSPTQSPP" gene complement(6480326..6483716) /gene="LOC100297695" /locus_tag="BOS_14420" /db_xref="GeneID:100297695" mRNA complement(join(6480326..6480881,6483646..6483716)) /gene="LOC100297695" /locus_tag="BOS_14420" /product="apolipoprotein A-I-like" /db_xref="GeneID:100297695" CDS complement(join(6480326..6480881,6483646..6483716)) /gene="LOC100297695" /locus_tag="BOS_14420" /codon_start=1 /product="apolipoprotein A-I-like" /protein_id="DAA22425.1" /db_xref="GI:296480310" /db_xref="GeneID:100297695" /translation="MCVEPLEEAALSLLGGNGPVSPGSLKLLDNWDTLASTLSKVREQ LGPVTQEFWDNLEKETASLRQEMHKDLEEVKQKVQPYLDEFQKWHEEVEIYRQKVAPL GEEFREGARQKVQELQDKLSPLAQELRDRARAHAETLRQQLAPYSDDLRPRLTARLEA LKEGGGSLAEYHAKASEQLKALGEKAKPALEHLRQEGSNRKEIENQAK" gene 6487949..6490879 /gene="LOC614237" /locus_tag="BOS_14395" /note="The sequence of the transcript was modified to remove a frameshift represented in this assembly." /pseudo /db_xref="GeneID:614237" mRNA join(6487949..6488082,6488708..6488775,6488923..6489019, 6490571..6490879) /gene="LOC614237" /locus_tag="BOS_14395" /product="apolipoprotein C-III-like" /db_xref="GeneID:614237" gene complement(<6493003..>6494890) /gene="APOA1" /locus_tag="BOS_14342" /db_xref="GeneID:281631" mRNA complement(join(<6493003..6493668,6494275..6494428, 6494612..6494674,6494873..>6494890)) /gene="APOA1" /locus_tag="BOS_14342" /product="apolipoprotein A-I preproprotein" /db_xref="GeneID:281631" CDS complement(join(6493068..6493668,6494275..6494428, 6494612..6494654)) /gene="APOA1" /locus_tag="BOS_14342" /note="apolipoprotein A1; apo-AI; apoA-I" /codon_start=1 /product="apolipoprotein A-I preproprotein" /protein_id="DAA22359.1" /db_xref="GI:296480244" /db_xref="GeneID:281631" /translation="MKAVVLTLAVLFLTGSQARHFWQQDDPQSSWDRVKDFATVYVEA IKDSGRDYVAQFEASALGKQLNLKLLDNWDTLASTLSKVREQLGPVTQEFWDNLEKET ASLRQEMHKDLEEVKQKVQPYLDEFQKKWHEEVEIYRQKVAPLGEEFREGARQKVQEL QDKLSPLAQELRDRARAHVETLRQQLAPYSDDLRQRLTARLEALKEGGGSLAEYHAKA SEQLKALGEKAKPVLEDLRQGLLPVLESLKVSILAAIDEASKKLNAQ" gene complement(6502620..6767531) /gene="SIK3" /locus_tag="BOS_14421" /db_xref="GeneID:506539" mRNA complement(join(6502620..6503450,6504163..6504333, 6505395..6505527,6506416..6506579,6515346..6516214, 6516990..6517329,6518334..6518443,6518874..6518959, 6519227..6519352,6520094..6520244,6526365..6526435, 6529922..6530077,6530302..6530455,6531819..6531928, 6532370..6532447,6532880..6533023,6533250..6533360, 6533907..6534025,6552357..6552480,6553109..6553233, 6582519..6582680,6616449..6616512,6620064..6620180, 6767259..6767531)) /gene="SIK3" /locus_tag="BOS_14421" /product="KIAA0999 protein-like" /db_xref="GeneID:506539" CDS complement(join(6504176..6504333,6505395..6505527, 6506416..6506579,6515346..6516214,6516990..6517329, 6518334..6518443,6518874..6518959,6519227..6519352, 6520094..6520244,6526365..6526435,6529922..6530077, 6530302..6530455,6531819..6531928,6532370..6532447, 6532880..6533023,6533250..6533360,6533907..6534025, 6552357..6552480,6553109..6553233,6582519..6582680, 6616449..6616512,6620064..6620180,6767259..6767531)) /gene="SIK3" /locus_tag="BOS_14421" /codon_start=1 /product="KIAA0999 protein-like" /protein_id="DAA22426.1" /db_xref="GI:296480311" /db_xref="GeneID:506539" /translation="MAAAAASGAGGAAGAGAGGAGPAGRLLPPPAPGPPAAPAAVPPA AGPPRPPAPASRGPVPARIGYYEIDRTIGKGNFAVVKRATHLVTKAKVAIKIIDKTQL DEENLKKIFREVQIMKMLCHPHIIRLYQVMETERMIYLVTEYASGGEIFDHLVAHGRM AEKEARRKFKQIVAAVYFCHCRNIVHRDLKAENLLLDANLNIKIADFGFSNLFTPGQL LKTWCGSPPYAAPELFEGKEYDGPKVDIWSLGVVLYVLVCGALPFDGSTLQNLRARVL SGKFRIPFFMSTECEHLIRHMLVLDPNKRLSMEQICKHKWMKLGDADPNFDRLIAECQ QLKEERQMDPLNEDVLLAMENMGLDKERTLQSLRSDAYDHYSAIYSLLCDRHKRHKTL RVGVPPGMPRTMGFQPPVNLQAEQAGTTMNISVPQVQLINPENQIVEPDGAVNVDSDE GEEPSPEALVRYLSMRRHTVGVADPRTEVMEDLQKLLPGFPGVNPQAPFLQVAPNVNF MHNLLPMQNLQPTGQLEYKEQSLLQPPTLQLLNGMGPLGRRASDGGANIQLHAQQLLK RPRGPSPLVTMTPAVPAVTPVDEESSDGEPDQEAVQSSTYKDSNTLHLPTERFSPVRR FSDGAASIQAFKAHLEKMGNNSSIKQLQQECEQLQKMYGGQIDERTLEKTQQQHMLYQ QEQHHQILQQQIQDSICPPQPSPPLQAACENQPALLTHQLQRLRIQPSSPPPNHPNNH LFRQPSNSPPPMSSAMMQSHGATSSSQFQGFPSRSAIFQQQPENCSPPPSVALTCLGI QQPPQSQQVTIQVQEPVDMLSSMPGAAAASAGRGVSISPNTSQVQMQLRTSLMAALSY GHRPLSKQLSADSAEAHSLNVNRFSPANYDQAHLHPHLFSDQSRGSPSSYNPSSGAGL PPTQALKVPPLDQFPTFPPSAHQQPPHYTTSALQQALLSPTPPDYTRHQQVPHILQGL LSPRHSLTGHSDMRLPPAEFAQLIKRRQRQQQQQEYQELFRHMNQGDAGSLAPGLGGQ SMTERQALPYQNADSYHHHHTSPQHLLQIRAQECISQVSSPTPTHSYAPQAALVHSES MEEECSCEGAKDGFPDRKSGNTLTKGCHDSPLLLSTGGPGDPESLLGTVNHAQELGIH PYRQPAAAFTRNKVSSRESVLGKCMDRSSPGQAMELPDHNGLGYPAHPSVSEHQRPRT LQRHHTIQNSDDAYVQLDNLPGMSLVAGKALSSARMSDAVLSQSSLMGSQQFQDGENE ECGESLGGQEHPDLTDGSQHLNSSCYPSTCITDILLSYKHPEVSFSMEQAGV" assembly_gap 6767591..6767690 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene <6820894..>6847682 /gene="PAFAH1B2" /locus_tag="BOS_14346" /db_xref="GeneID:282514" mRNA join(<6820894..6821287,6831332..6831419,6839866..6839955, 6840872..6840988,6842335..6842457,6846309..>6847682) /gene="PAFAH1B2" /locus_tag="BOS_14346" /product="platelet-activating factor acetylhydrolase IB subunit beta" /db_xref="GeneID:282514" CDS join(6831339..6831419,6839866..6839955,6840872..6840988, 6842335..6842457,6846309..6846587) /gene="PAFAH1B2" /locus_tag="BOS_14346" /EC_number="3.1.1.47" /note="platelet-activating factor acetylhydrolase, isoform Ib, beta subunit (30kD); platelet-activating factor acetylhydrolase, isoform Ib, beta subunit 30kDa; PAFAH subunit beta; PAF-AH subunit beta; PAF-AH 30 kDa subunit; PAF acetylhydrolase 30 kDa subunit; platelet-activating factor acetylhydrolase, isoform Ib, subunit 2 (30kDa)" /codon_start=1 /product="platelet-activating factor acetylhydrolase IB subunit beta" /protein_id="DAA22363.1" /db_xref="GI:296480248" /db_xref="GeneID:282514" /translation="MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLF VGDSMVQLMQQYEIWRELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWV GTNNHENTAEEVAGGIEAIVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLL KVSLPKLANVQLLDTDGGFVHSDGAISCHDMFDFLHLTGGGYAKICKPLHELIMQLLE ETPEEKQTTIA" gene <6861688..>6877125 /gene="SIDT2" /locus_tag="BOS_14358" /db_xref="GeneID:513462" mRNA join(<6861688..6861903,6863558..6863679,6863948..6864112, 6864213..6864258,6864673..6864774,6864872..6864955, 6865689..6865788,6865983..6866048,6866958..6867051, 6867392..6867444,6868167..6868238,6868369..6868449, 6869484..6869590,6869883..6869956,6870044..6870110, 6870653..6870726,6870873..6870996,6871230..6871347, 6872145..6872281,6872475..6872583,6872813..6872889, 6873064..6873110,6873379..6873484,6874137..6874247, 6875483..6875596,6875669..>6877125) /gene="SIDT2" /locus_tag="BOS_14358" /product="SID1 transmembrane family, member 2" /db_xref="GeneID:513462" CDS join(6861721..6861903,6863558..6863679,6863948..6864112, 6864213..6864258,6864673..6864774,6864872..6864955, 6865689..6865788,6865983..6866048,6866958..6867051, 6867392..6867444,6868167..6868238,6868369..6868449, 6869484..6869590,6869883..6869956,6870044..6870110, 6870653..6870726,6870873..6870996,6871230..6871347, 6872145..6872281,6872475..6872583,6872813..6872889, 6873064..6873110,6873379..6873484,6874137..6874247, 6875483..6875596,6875669..6875731) /gene="SIDT2" /locus_tag="BOS_14358" /inference="similar to AA sequence:RefSeq:NP_001019701.2" /codon_start=1 /product="SID1 transmembrane family, member 2" /protein_id="DAA22375.1" /db_xref="GI:296480260" /db_xref="GeneID:513462" /translation="MFALGLPFWALLVASVESHLGVLGPKNVSQKDAEFERTYVDEVN SELVNIYTFNHTVTRNRTEGVRVSVNVLNKQKGAPLLFVVRQKEAVVSFQVPLILRGL FQRKYLYQKVERTLCQPPTKNESEVQFFYVDVSTLSPVNTTYQLRVSRMDDFVLRTGE PFSFNTTAAQPQYFKYEFPEGVDSVIVKVASNTAFPCSVISIQDVLCPVYDLDNNVAF IGMYQTMTKKAAITVQRKDFPSNSFYVVVVVKTEDQACGGSLPFYPFIEDEPVDQGHR QKTLSVLVSRAVTSEAYVGGMLFCLGIFLSFYLLTVLLACWENWRQRKKSLLVAVDRA CPESGHPRVLADSFPGSSPYDGYNYGSFENGSGSTGSTDGPVDSAGPGDLSYNYPDPP GTRPRLDSMSSVEEDDYDTLADVDSDKNVIRTKQYLYVADLARKDKRVLRKKYQIYFW NIATIAVFYALPVVQLVITYQTVVNVTGNQDICYYNFLCAHPLGNLSAFNNILSNLGY ILLGLLFLLIILQREINHNRALLRNDLCALECGIPKHFGLFYAMGTALMMEGLLSACY HVCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHPDINASAYSAYACLAIVIFFSVLGVV FGKGNTAFWIIFSVIHITATLLLSTQLYYMGRWKLDSGICRRILHVLYTDCIRQCSGP LYVDRMVLLVMGNIINWSLAAYGLIMRPNDFASYLLAIGICNLLLYFAFYIIMKLRSG ERIKLIPLLCIVCTSVVWGFALFFFFQGLSTWQKTPAESREHNRDCILLDFFDDHDIW HFLSSIAMFGSFLVLLTLDDDLDTVQRDKIYVF" gene <6879216..>6884472 /gene="TAGLN" /locus_tag="BOS_14359" /db_xref="GeneID:513463" mRNA join(<6879216..6879272,6882681..6882872,6882986..6883163, 6883440..6883542,6883886..>6884472) /gene="TAGLN" /locus_tag="BOS_14359" /product="transgelin" /db_xref="GeneID:513463" CDS join(6882693..6882872,6882986..6883163,6883440..6883542, 6883886..6884030) /gene="TAGLN" /locus_tag="BOS_14359" /note="SM22-alpha; 25 kDa F-actin-binding protein; smooth muscle protein 22-alpha" /codon_start=1 /product="transgelin" /protein_id="DAA22376.1" /db_xref="GI:296480261" /db_xref="GeneID:513463" /translation="MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGPDVGR PDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAE DYGVTKTDMFQTVDLFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHK REFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS" gene complement(6884573..6912012) /gene="PCSK7" /locus_tag="BOS_14396" /db_xref="GeneID:515398" mRNA complement(join(6884573..6886054,6886312..6886429, 6886628..6886721,6887698..6887792,6888454..6888610, 6895837..6895939,6896339..6896446,6896870..6897037, 6899821..6899921,6905808..6905946,6906371..6906425, 6907293..6907383,6908765..6908930,6909750..6909884, 6910936..6911415,6911890..6912012)) /gene="PCSK7" /locus_tag="BOS_14396" /product="proprotein convertase subtilisin/kexin type 7" /db_xref="GeneID:515398" CDS complement(join(6885692..6886054,6886312..6886429, 6886628..6886721,6887698..6887792,6888454..6888610, 6895837..6895939,6896339..6896446,6896870..6897037, 6899821..6899921,6905808..6905946,6906371..6906425, 6907293..6907383,6908765..6908930,6909750..6909884, 6910936..6911403)) /gene="PCSK7" /locus_tag="BOS_14396" /codon_start=1 /product="proprotein convertase subtilisin/kexin type 7" /protein_id="DAA22409.1" /db_xref="GI:296480294" /db_xref="GeneID:515398" /translation="MPKGRQKVPHSDAPLGLPTGLWLELAGLFLLLPWVMGLVGAGGP RAQGPRGLSWAVRLDGPEGEGAEESLERRADALAQATGLMNAGRIGELQGHYLLVQPA GHRQARQVKAIRQQVEAVLARHEAVRWHSEQRLLKRTKRGVHFNDPKYPQQWHLNNRR SPGRDINVTGVWERNVTGRGVTVVVVDDGVEHTIQDIAPNYSPEGSYDLNSNDPDPMP HPDLENGNHHGTRCAGEIAAVPNNSFCAVGVAFGSRIAGIRVLDGPLTDSMEAVAFNK HYQINDIYSCSWGPDDDGKTVDGPHQLGKAALQHGVIAGRQGFGSIFVVASGNGGQHN DNCNYDGYANSIYTVTIGAVDEEGRMPFYAEECASMLAVTFSGGDKMLRSIVTTDWDL QKGTGCTEGHTGTSAAAPLAAGMIALMLQVRPCLTWRDVQHIIVFTATRYEDRHADWI TNEAGFSHSHQHGFGLLNAWRLVNAAKIWTSVPYLASYVSPVLKENKAIPLSARPLEV LWNVSRMDLDMSGLKTLEHVAVTISITHPRRGSLEVKLFCPSGMMSLIGAPRSLDSDP NGFNDWTFSTVRCWGERAKGTYRLVIRDVGDETSQAGVLRQWQLTLYGSVWSPVDIRD RQRLLESAMSGKYLHDGFTLPCPPGLNIPEEDGYTITPNTLKTLVLIGCFTVFWTIYY TLEVYLSQRNVAFGPICRSGPCHWPQRSQKAKEEGTELESMPLCSSQDPGGVGLESEG SPTTSRLHAPDLLDQGDWSLSQSRGALDVPQLLPPDLLQGKEAQMC" gene 6914491..6957974 /gene="RNF214" /locus_tag="BOS_14397" /db_xref="GeneID:616238" mRNA join(6914491..6914496,6916087..6916202,6918466..6918976, 6919692..6919751,6922994..6923134,6926172..6926311, 6953487..6953583,6953809..6953897,6954489..6954579, 6954782..6954880,6955068..6955444,6955579..6955711, 6956059..6956163,6956442..6956537,6957414..6957974) /gene="RNF214" /locus_tag="BOS_14397" /product="ring finger protein 214" /db_xref="GeneID:616238" CDS join(6916093..6916202,6918466..6918976,6919692..6919751, 6922994..6923134,6926172..6926311,6953487..6953583, 6953809..6953897,6954489..6954579,6954782..6954880, 6955068..6955444,6955579..6955711,6956059..6956163, 6956442..6956537,6957414..6957479) /gene="RNF214" /locus_tag="BOS_14397" /codon_start=1 /product="ring finger protein 214" /protein_id="DAA22410.1" /db_xref="GI:296480295" /db_xref="GeneID:616238" /translation="MAASEVAGVVATAPNPPESSSSVCASKPDEGPPDGLSPKDPAQK HKNSPLSSVSNQTITKENNRNAHLEHPEQNPGSSAGDTSAAHRAVLGENLIATALGLS GGGSQSDLKDVASTAGEEGDTCLQESLHPATRSLKAGCHTKQLASGNCPEEKAPQASI LKEGSRDPGLEFPPVVPPANGVEGVRVDQDDDQDSSSLKLSQNIAVQTDFKTTDSEVN TDQDIEKNLDKMMTERTLLKERYQEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEI LKAIQDVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQ DGEINRNIMEETERAWKAEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETV RSKQEWETRLNGVRIMKKNVRDQFNNHIQLVRNGAKLSSLPQIPTPTLPPPPSETDFM LQVFQPSPSLAPRMPFSIGQVTMPMVMPSADPRSLSFPILNPALSQPNQPSPPLPGSH GRNSPSLGSLVGPHGPHVPPAASIPPPPGLGGVKASTETPRPQPVDKLEKILEKLLTR FPQCNKAQMTNILQQIKTARTTMAGLTMEELIQLVAARLAEHERVAASTQPLGRIRAL YPAPLAQISTPMFLPSAQVSYPGRSSHAPATCKLCLMCQKLVQPSELHPMACTHVLHK ECIKFWAQTNTNDTCPFCPTLK" gene complement(6961489..6983147) /gene="BACE1" /locus_tag="BOS_14377" /db_xref="GeneID:614333" mRNA complement(join(6961489..6962286,6962920..6963091, 6963354..6963503,6963828..6963929,6964857..6964991, 6965690..6965827,6966292..6966508,6967825..6967913, 6982475..6983147)) /gene="BACE1" /locus_tag="BOS_14377" /product="beta-secretase 1 precursor" /db_xref="GeneID:614333" CDS complement(join(6962045..6962286,6962920..6963091, 6963354..6963503,6963828..6963929,6964857..6964991, 6965690..6965827,6966292..6966508,6967825..6967913, 6982475..6982735)) /gene="BACE1" /locus_tag="BOS_14377" /EC_number="3.4.23.46" /note="memapsin-2; beta-site APP cleaving enzyme 1; membrane-associated aspartic protease 2; beta-site amyloid precursor protein cleaving enzyme 1; beta-secretase 1" /codon_start=1 /product="beta-secretase 1 precursor" /protein_id="DAA22394.1" /db_xref="GI:296480279" /db_xref="GeneID:614333" /translation="MAQALPWLLLWMGSGVLPAHGSQPGIRLPLRSGLGGAPLGLRLP RETDEESEEPGRRGSFVEMVDNLRGKSGQGYYVEMTLGSPPQTLNILVDTGSSNFAVG AAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANI AAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGA GFPLNQSEALASVGGSMIIGGIDHSLYMGSLWYTPIRREWYYEVIIVRVEINGQDLKM DCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAG TTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGT VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEGPFVTPDMEDCGYNIPQT DESTLMTIAYVMAAICALFMLPLCLMVCQWRCLRCLRHQHDDFADDISLLK" gene 6991833..7063433 /gene="CEP164" /locus_tag="BOS_14398" /note="The sequence of the transcript was modified to prevent a premature stop codon represented in this assembly." /db_xref="GeneID:514284" mRNA join(6991833..6991878,7000536..7000638,7004366..7004477, 7013772..7013982,7022806..7022961,7023332..7023466, 7024125..7024202,7033627..7033995,7034907..7034987, 7037111..7037194,7041512..7041606,7042553..7042720, 7043429..7043566,7048800..7049009,7052206..7052337, 7052455..7052671,7053598..7053675,7053906..7054037, 7054340..7054462,7055583..7055726,7056167..7056250, 7056362..7056430,7056705..7056880,7057233..7057359, 7057707..7057791,7058250..7058452,7059433..7059540, 7060136..7060250,7060607..7060951,7061667..7061733, 7062413..7062535,7062702..7063433) /gene="CEP164" /locus_tag="BOS_14398" /product="hypothetical protein" /db_xref="GeneID:514284" CDS join(7000557..7000638,7004366..7004477,7013772..7013982, 7022806..7022961,7023332..7023466,7024125..7024202, 7033627..7033995,7034907..7034987,7037111..7037194, 7041512..7041606,7042553..7042720,7043429..7043566, 7048800..7049009,7052206..7052337,7052455..7052671, 7053598..7053675,7053906..7054037,7054340..7054462, 7055583..7055726,7056167..7056250,7056362..7056430, 7056705..7056880,7057233..7057359,7057707..7057791, 7058250..7058452,7059433..7059540,7060136..7060250, 7060607..7060951,7061667..7061733,7062413..7062535, 7062702..7062798) /gene="CEP164" /locus_tag="BOS_14398" /codon_start=1 /transl_except=(pos:7057755..7057757,aa:OTHER) /product="hypothetical protein" /protein_id="DAA22411.1" /db_xref="GI:296480296" /db_xref="GeneID:514284" /translation="MAGRPIRIGDQLVLEEDYDENYIPSEHEILEFAREIGIDPIKEP QLMWLAREGIVAPLPVEWKPCQDITGDIYYFNFANGQSTWDHPCDEHYRNLVIQERGK LSTPGATKKKEKKKKKEKEKKDKKDKETSKSPLALGSSLAPVHVPLGGLAPLRGLVDA PPSALHGPQSVSLGSSVESGQLGELLLPSQGLKPSAATKGLLGSIHEDKNALSLLALG EETNEEDEAESDNQSVRSSSELLRNLHLDIGALGGDFEYEESPRASQPEEKDVSLDSD AAGPLTSGKPFSQGADSSLSSADDKERQRREASWLPGKGKTEKNDPGTSRSGVDPGGD QPANTTEKEAPEDPVDAGEQGSRKEEAAEDPKEEASVPKESRSEVSEESEISEHGEQL QLSDSAASDPKSFLGLGFGFRSQISERLLDMDVHSSVLDGARWEAQRLGREDKDASQS SQEELQSKQSGGSERYRVLSPPLLREERLQSLLHSQATDEGPPQAPEGQPEWKEAAEP EEGSLGSPPPSVSLQREALPSPPAAHERGQEWRPQAEGPGPGQEEPKEKVAVSPTPPG SPEVRSAEPAALREQLSEAALEATDEAVTRELEQEQTRLLESKQEKMQRLREKLCREE EAEALQLHQQKEKALSSLKEQLQRATEEEETQMREQERQRLSRLRAQVQSSSEADEDQ IRAEQEASLQRLREELESLQKAERASLEERSRQTLEQLREEMEASEKREQAALKVEKE RALQQLREQLEGERREAAAALEREHREELERLSSSLEAKHREVVSSLQKKMQEAHQKE EAQLQESLGRAEQRAHHRVYQVLEYEQELSGLLREKRQEVEREHERKMDRMKEEHQQV VAEARQQYEAEERKQRAELLGHLTGELERLRRAHERELESVRQEQDRQLEDLRRRHRE QERKLQDLEVELETRTKDVKARLAQLDVQKEAARKEKQQLLDVQRQVVLESEEATATH QHLEEAKKEHTHLLESNQQLRRILEELQARKLELESQVELLQAQSQRLQKHVSDLEVQ AQKKQDLLKELEVKDSNTSPHLEPDLLLEDLRRSPRTNQTKEVSFSLFPEQGDXPILG QVRSNNLWHYLSAEGVALRNAKEFLMQQSRSMRRRQTALKAAQQHWRQELASAQEADK DPPGTKALEDVCKDLEEETRHLDEMKSALWKGHDLLKKKEEKLHQLESSLREEASDED MLRGLPTKKVVTFDLSDLEDGSSDSSDSCPLPRFNLTPSPTFPNKIHYLSSSLQSISS QLNGVLSVVGSLNAQPPPLFTSTPVPLPTQASRSTLAPPHPSLTRGSASSPARPTSAQ WTWDPGLGPRLSSSAAQTVDDFLVEKWRKYFPTGIPFLSSGPAPLENRLGYVSASEQL RRLQHPSSRVPQVGTSNLQDMIAANRKWLEHYKNDPKLPLFSSVPKPAAGSSFLQLDL DENNRLKIYHY" gene complement(7085226..7451386) /gene="DSCAML1" /locus_tag="BOS_14399" /db_xref="GeneID:538739" mRNA complement(join(7085226..7085701,7087532..7087843, 7089648..7089842,7090464..7090616,7090919..7091037, 7091186..7091216,7093280..7093435,7095545..7095832, 7096216..7096404,7097103..7097201,7097594..7097757, 7098133..7098250,7100461..7100614,7106810..7106949, 7115012..7115167,7117938..7118084,7121590..7121830, 7126086..7126156,7127333..7127500,7134507..7134635, 7135252..7135348,7135903..7136102,7158253..7158429, 7159349..7159468,7159879..7160157,7169450..7169722, 7171406..7171702,7173196..7173471,7176997..7177275, 7183892..7184038,7429371..7429517,7433883..7434200, 7451164..7451386)) /gene="DSCAML1" /locus_tag="BOS_14399" /product="Down syndrome cell adhesion molecule like 1" /db_xref="GeneID:538739" CDS complement(join(7085226..7085701,7087532..7087843, 7089648..7089842,7090464..7090616,7090919..7091037, 7091186..7091216,7093280..7093435,7095545..7095832, 7096216..7096404,7097103..7097201,7097594..7097757, 7098133..7098250,7100461..7100614,7106810..7106949, 7115012..7115167,7117938..7118084,7121590..7121830, 7126086..7126156,7127333..7127500,7134507..7134635, 7135252..7135348,7135903..7136102,7158253..7158429, 7159349..7159468,7159879..7160157,7169450..7169722, 7171406..7171702,7173196..7173471,7176997..7177275, 7183892..7184038,7429371..7429517,7433883..7434200, 7451164..7451386)) /gene="DSCAML1" /locus_tag="BOS_14399" /codon_start=1 /product="Down syndrome cell adhesion molecule like 1" /protein_id="DAA22412.1" /db_xref="GI:296480297" /db_xref="GeneID:538739" /translation="MTGAREPRREEPPPPSAGLRSGESGARSAGGWERAERGRGAAAR PATGPPPRRIGPLYGMWLVTFLLLLDSLHKARLEDVGTSLYFVNDSLQQVTFSSSVGV VVPCPAAGSPSAALRWYLATGDDIYDVPHIRHVHANGTLQLYPFSPSAFNSFIHDNDY FCTAENAAGKIRSPNIRVKAVFREPYTVRVEDQRSMRGSVAVFKCLIPSSVQEYVSVV SWEKDTVAIVPENRFLITSHGGLYISDVQKEDALSTYRCITKHKYSGETRQSNGARLS VTDPAESIPTILDGFHSQEVWAGHTMELPCTASGYPIPAIRWLKDGRPLPADSRWTKR ITGLTISDLRTEDSGTYICEVTNTFGSAEVTGTLTVIDPLHVTLTPKNLKTGIGSTVI LSCALLGSPEFTIRWYRNTELVLPSEAISIRGLSNETLLITSAQKSHSGAYQCFATRK TQTAQDFAIIVLEDGTPRIVSSFSEKVVNPGEQFSLMCAAKGAPPPTITWALDDEPIV RDGSHRTNQYTMSDGTTISHMNVTGPQIRDGGVYRCTARNSVGSAEYQARINVRGPPS IRAMRNITAVAGRDTLVNCRVIGYPYYSIKWYKDALLLPDNHRQVVFENGTLKLTDVQ KGMDEGEYLCSVLIQPQLSISQSVHVAVKVPPLIQPFEFPPASIGQLLYIPCVVSSGD MPIRITWRKDGQVIISGSGVTIESKEFMSSLQISSVSLKHNGNYTCIASNAAATVSRE RQLIVRVPPRFVVQPNNQDGIYGKAGVLNCSVDGYPPPKVMWKHAKGSGNPQQYHPVP LTGRIQILPNSSLLIRHVLEEDIGYYLCQASNGVGTDISKSMFLTVKIPAMITSHPNT TIAIKGHAKELNCTARGERPIIIRWEKGDTVIDPDRVMRYAIATKDNGDEVVSTLKLK PADRGDSVFFSCHAINSYGEDRGLIQLTVQEPPDPPELEIREVKARSMNLRWTQRFDG NSIITGFDIEYKNKTDSWDFKQSTRNISPTINQANIVDLHPASVYSIRMYSFNKIGRS EPSKELTISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYREN SPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLE DVPSQPPENVRALSITSDVAVISWSEPPRSTLNGVLKGYRVIFWSLYVDGEWGEMQNI TTTRERVELRGMEKFTNYSVQVLAYTQAGDGVRSSVLYIQTKEDVPGPPAGIKAVPSS ASSVVVSWLPPTKPNGVIRKYTIFCSSPGSGQPAPSEYETSPEQLFYRIAHLNRGQQY LLWVAAVTSAGRGNSSEKVTIEPAGKAPAKIISFGGTVTTPWMRDVRLPCNSVGDPAP AVKWTKDSEDSAIPVSMDGHRLIHTNGTLLLRAVKAEDSGYYTCTATNTGGFDTIIVN LLVQVPPDQPRLTVSKTSASSITLTWIPGDNGGSSIRGFVLQYSVDNSEEWKDVFVSS SERSFRLDSLKCGTWYKVKLAAKNSVGSGRISEIIEAKTHGREPSFSKDQHLFTHINS THARLNLQGWNNGGCPITAIMLEYRPKGTWAWQGLRANSSGEVFLTELREATWYELRM RACNSAGCGNETAQFATLDYDGSTIPPIKSAQGEGDDVKKLFTIGCPVILATLGVALL FIVRKKRKEKRLKRLRDAKSLAEMLISKNNRSFDTPVKGPPQGPRLHIDIPRVQLLIE DKEGIKQLGDDKATIPVTDAEFSQAVNPQSFCTGVSLHHPALIQSSGPLIDMSDIRPG TNPVSRKNVKSAHSTRNRYSSQWTLTKCQASTPARTLTSDWRTVGSQHGVTVTESDSY SASLSQDTDKGRNSMVSTESASSTYEELARAYEHAKLEEQLQHAKFEITECFISDSSS DQMTTGTNENADSMTSMSTPSEPGICRFTASPPKPQDADRGKNVAVPIPHRANKSDYC NLPLYAKSEAFFRKAEGREPCPVVPPREASIRNVTRTYHPQARHLTLDPASKPLGLPH PGAPTAASTATLPQRTLAMPAPPAGPAPAAPGPAPAEPPAAPSTAPPAPSTEPPRAGG PHTKMGGSRDSLLEMSTSGVGRSQKQGAGAYSKSYTLV" assembly_gap 7142384..7142483 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7179719..7179925 /estimated_length=207 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7290707..7290806 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7379209..7379520 /estimated_length=312 /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<7470120..>7477630) /gene="FXYD2" /locus_tag="BOS_14344" /db_xref="GeneID:281773" mRNA complement(join(<7470120..7470308,7470884..7470914, 7471090..7471126,7472780..7472854,7473021..7473059, 7477571..>7477630)) /gene="FXYD2" /locus_tag="BOS_14344" /product="sodium/potassium-transporting ATPase subunit gamma" /db_xref="GeneID:281773" CDS complement(join(7470890..7470914,7471090..7471126, 7472780..7472854,7473021..7473059,7477571..7477589)) /gene="FXYD2" /locus_tag="BOS_14344" /note="sodium pump gamma chain; FXYD domain-containing ion transport regulator 2; sodium/potassium-transporting ATPase gamma chain; Na(+)/K(+) ATPase subunit gamma" /codon_start=1 /product="sodium/potassium-transporting ATPase subunit gamma" /protein_id="DAA22361.1" /db_xref="GI:296480246" /db_xref="GeneID:281773" /translation="MDRWYLGGSPKENEDPFYYDYETVRNGGLIFAALAFIVGLVIIL SKRFRCGAKRQHRQIPEDGL" gene complement(7487564..7524613) /gene="FXYD6" /locus_tag="BOS_14355" /db_xref="GeneID:511064" mRNA complement(join(7487564..7488757,7490644..7490694, 7491228..7491277,7492003..7492039,7492616..7492690, 7492796..7492834,7493443..7493505,7524583..7524613)) /gene="FXYD6" /locus_tag="BOS_14355" /product="FXYD domain-containing ion transport regulator 6 precursor" /db_xref="GeneID:511064" CDS complement(join(7490666..7490694,7491228..7491277, 7492003..7492039,7492616..7492690,7492796..7492834, 7493443..7493500)) /gene="FXYD6" /locus_tag="BOS_14355" /note="phosphohippolin; FXYD domain-containing ion transport regulator 6" /codon_start=1 /product="FXYD domain-containing ion transport regulator 6 precursor" /protein_id="DAA22372.1" /db_xref="GI:296480257" /db_xref="GeneID:511064" /translation="MEVVLLFLCGLLAPAVLASATEQEKEKDPFHYDYQTLRIGGLVF AVVLFSVGILLILSRRCKCSFNQKPRAPGDEEAQVENLVTANATEPQKAEN" gene 7494231..7500922 /gene="LOC616353" /locus_tag="BOS_14422" /db_xref="GeneID:616353" mRNA join(7494231..7494281,7500560..7500922) /gene="LOC616353" /locus_tag="BOS_14422" /product="histone cluster 1, H2bc-like" /db_xref="GeneID:616353" CDS join(7494231..7494281,7500560..7500922) /gene="LOC616353" /locus_tag="BOS_14422" /codon_start=1 /product="histone cluster 1, H2bc-like" /protein_id="DAA22427.1" /db_xref="GI:296480312" /db_xref="GeneID:616353" /translation="METGSQSINAQPPLPQQSAPAPKKGSKKAVTKAQKKDGKKCKRS RKESYSVYVYQVLKQVHPDTGISSKAMGIMNSFINDILARIAGEASSLAHYNKRSTIT FKEIQTAVRLLLPGELAKHAVSEGTKAVTKCTSSK" assembly_gap 7499249..7499813 /estimated_length=565 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7523391..7523490 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7528004..7528103 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(7561435..7592933) /gene="TMPRSS13" /locus_tag="BOS_14400" /db_xref="GeneID:529120" mRNA complement(join(7561435..7561690,7562388..7562540, 7562692..7562834,7565125..7565223,7570501..7570673, 7571907..7572069,7573116..7573159,7574090..7574182, 7576021..7576150,7577077..7577199,7580004..7580108, 7581179..7581413,7592835..7592933)) /gene="TMPRSS13" /locus_tag="BOS_14400" /product="transmembrane protease, serine 13-like" /db_xref="GeneID:529120" CDS complement(join(7561664..7561690,7562388..7562540, 7562692..7562834,7565125..7565223,7570501..7570673, 7571907..7572069,7573116..7573159,7574090..7574182, 7576021..7576150,7577077..7577199,7580004..7580108, 7581179..7581413,7592835..7592855)) /gene="TMPRSS13" /locus_tag="BOS_14400" /codon_start=1 /product="transmembrane protease, serine 13-like" /protein_id="DAA22413.1" /db_xref="GI:296480298" /db_xref="GeneID:529120" /translation="MERDSRRNASPAGTPPPRAFPGRAPAARASPSRSSSGRSSSTMS PLTTSSPTRVYLVRATPVGTVPVHASPAGPTPAARAARESPGITLPKFTWQEGQKRLL LIGCVLLLIALVVSLIILFYFWRGHTGVNYKEPRESCPSHAVRCDGVEDCKLKSDELG CVRFDWDKSLLKVYSGSSHQWLPVCSDSWNDSYSQKTCQQLGFESAYWTTKVDNRNVD SSFSVSEFNSTIQQSTYRSDCPSQQYVALQCSHCGLRAMTGRIVGGARAPESKWPWQV SLQFSRTHICGGTLIDAQWILTAAHCFFITREKILEGWKVYVGTNDLHHLPESASVAQ IIINSNYSDDQDDYDIALMRLSKPLTLSAHVHPACLPMHGQTFGLNEICWITGFGKTK ETDERTSPFLREVQVNLIDFKKCNDYLVYDSYLTPRMMCAGDLRGGRDSCQGDSGGPL VCEQNGRWYLAGVTSWGTGCGQRNKPGVYTKVTEVLPWIYSKMEREMRFRKS" assembly_gap 7650545..7651413 /estimated_length=869 /gap_type="within scaffold" /linkage_evidence="unspecified" gene 7651766..7663409 /gene="IL10RA" /locus_tag="BOS_14401" /db_xref="GeneID:513478" mRNA join(7651766..7651844,7654238..7654352,7654954..7655144, 7656253..7656422,7657294..7657441,7659457..7659578, 7662359..7663409) /gene="IL10RA" /locus_tag="BOS_14401" /product="interleukin 10 receptor, alpha-like" /db_xref="GeneID:513478" CDS join(7651766..7651844,7654238..7654352,7654954..7655144, 7656253..7656422,7657294..7657441,7659457..7659578, 7662359..7663288) /gene="IL10RA" /locus_tag="BOS_14401" /codon_start=1 /product="interleukin 10 receptor, alpha-like" /protein_id="DAA22414.1" /db_xref="GI:296480299" /db_xref="GeneID:513478" /translation="MLSHQIVKLVALLSLLLGSRAHGKDLELPRPPSAWFEAEFFHHV LYWTPIPNQSESTYYEVELLRYGVEPTSWKSIQRCSQMLMMSCDVTMETLDLYRSNGY RARVRAVDGSQHSNWTSPNTRFSMDEVTLTVASVKLEVHNSNIVGAIQLPRPEVAPEG DTYENIFHNFREYQIEVRKAPGHYESHGKVKNESFKLPIPRGVGEFCVRVKPSVGSRV NKEVWSKEECILLTSQYFTVTNISIFLTFVLLLYGALAFCLTFQLYVRRRGKLPAVLV FKKPSPFNLISQFSHPETQDTVHTLDEEAFPKVTPELRNSDMHGSTDSGFGSAKPSLQ TEEPQFLLPASDPQAGGTLEKGMPQELENSCGSAGSSNSADSGICLPDPRLCPGTEPS WEPQVGSDSRDREDSGIGLVQNSRGQPEDAQGGSASGHVSPLGPEEPVEEDSVAGAFQ GYLKQTQCPEEKAAQAGGLEEESSSTEDLDPQFRTCLDTEAGWPLPALAKGYVQQDPP EMILAPLQTPEEQWDRPTEDWSFLGLTSCGDLGTSDWSFAHDLAPLDCVPAPGGLLGS FDSDLVTLPLITSLQSNE" assembly_gap 7683953..7684052 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7735047..7735146 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene <7754296..>7794301 /gene="TMPRSS4" /locus_tag="BOS_14357" /db_xref="GeneID:513343" mRNA join(<7754296..7754531,7772388..7772421,7774936..7775049, 7777993..7778145,7779912..7780041,7783108..7783209, 7784496..7784536,7787610..7787769,7789042..7789208, 7790333..7790431,7790618..7790760,7792659..7792808, 7793744..>7794301) /gene="TMPRSS4" /locus_tag="BOS_14357" /product="transmembrane protease, serine 4" /db_xref="GeneID:513343" CDS join(7754499..7754531,7772388..7772421,7774936..7775049, 7777993..7778145,7779912..7780041,7783108..7783209, 7784496..7784536,7787610..7787769,7789042..7789208, 7790333..7790431,7790618..7790760,7792659..7792808, 7793744..7793755) /gene="TMPRSS4" /locus_tag="BOS_14357" /codon_start=1 /product="transmembrane protease, serine 4" /protein_id="DAA22374.1" /db_xref="GI:296480259" /db_xref="GeneID:513343" /translation="MENSEDRRARVDPEINRPLNSLDVTPLRKSRTPLEIFKKVGIPI IAAVLILATIIVVAVLIKVILDSYFFFCGQPLLFIPREQVCDGHQDCASGEDEKYCVK KLPDGPPVAVRLSRDRSTLQVLNPATKNWASACFDSFTEALAKTACRQMGYDSKPTFR AVDAGPAQDLDIVKVTENLQELQVQNSSGPCLSGSLVSLQCLACGQSVKAPRVVGGKE ASVDSWPWQVSIQYDKQHICGGSILDPHWILTAAHCFWKHLDVPNWKVRAGSDRLGSF PSLPVAKIFILEPNATYPREHDIALVKLQLPLTFSGTIRPICLPFSDEELTPGTPLWV IGWGFTEENGGKMSDILQQGSVQLINRTRCNAEDAYQGEVTKTMMCAGLPEGGVDTCQ GDSGGPLMYHSDWWQVVGIVSWGHGCGGPTTPGVYTKVTAYLNWIYNVRKSDP" assembly_gap 7763518..7763642 /estimated_length=125 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7774270..7774369 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7791989..7792088 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(7818248..7838114) /gene="SCN4B" /locus_tag="BOS_14371" /db_xref="GeneID:538100" mRNA complement(join(7818248..7821870,7825848..7825977, 7827650..7827878,7829313..7829485,7837934..7838114)) /gene="SCN4B" /locus_tag="BOS_14371" /product="sodium channel subunit beta-4 precursor" /db_xref="GeneID:538100" CDS complement(join(7821777..7821870,7825848..7825977, 7827650..7827878,7829313..7829485,7837934..7837994)) /gene="SCN4B" /locus_tag="BOS_14371" /note="sodium channel subunit beta-4" /codon_start=1 /product="sodium channel subunit beta-4 precursor" /protein_id="DAA22388.1" /db_xref="GI:296480273" /db_xref="GeneID:538100" /translation="MPGARDQGAARARWLGIGLLGLFLLPVSLSLEVSVGKATTIYAV NGTEILLPCTFSSCFGFENLHFWWSYNSSDTYKILIDGTVKNEKSDPKVKLKDDDRIT LEGSTKEKMNNISISLKNLEFSDTGKYTCHVKNPKENDFQHQATIFLQVVDKLEEVDN TVTLIILGVVGGVIGLLIFILLVKKFIAFIIKKTQEKKKECLVSSSGNDNTENGLPGS KAEEKAPTKV" assembly_gap 7838699..7838798 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(7852157..7864060) /gene="SCN2B" /locus_tag="BOS_14402" /db_xref="GeneID:538722" mRNA complement(join(7852157..7852590,7854154..7854364, 7854678..7854844,7863894..7864060)) /gene="SCN2B" /locus_tag="BOS_14402" /product="sodium channel, voltage-gated, type II, beta-like" /db_xref="GeneID:538722" CDS complement(join(7852391..7852590,7854154..7854364, 7854678..7854844,7863894..7863963)) /gene="SCN2B" /locus_tag="BOS_14402" /codon_start=1 /product="sodium channel, voltage-gated, type II, beta-like" /protein_id="DAA22415.1" /db_xref="GI:296480300" /db_xref="GeneID:538722" /translation="MHRNAWLPRPAFSLTGLSLFFSLVPPGRSMEVTVPNTLNVLNGS DARLSCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFRDRVEFS GNPSKYDVSVTLKKVQLEDEGTYNCYIMNPPDRHRGHGKIYLQVLMEEPPERDSTVAV IVGASVGGFLAVVILVLMVVKCVRRKKEQKLSTDDLKTEEEGKTDGEGNADDGAK" gene complement(7874545..7905718) /gene="AMICA1" /locus_tag="BOS_14353" /db_xref="GeneID:509575" mRNA complement(join(7874545..7875047,7878662..7878748, 7882046..7882106,7885043..7885181,7888394..7888631, 7890371..7890483,7895895..7896120,7897778..7897932, 7901097..7901159,7903202..7903306,7905673..7905718)) /gene="AMICA1" /locus_tag="BOS_14353" /product="adhesion molecule, interacts with CXADR antigen 1" /db_xref="GeneID:509575" CDS complement(join(7874955..7875047,7878662..7878748, 7882046..7882106,7885043..7885181,7888394..7888631, 7890371..7890483,7895895..7896120,7897778..7897932, 7901097..7901139)) /gene="AMICA1" /locus_tag="BOS_14353" /inference="similar to AA sequence:RefSeq:NP_001073719.1" /codon_start=1 /product="adhesion molecule, interacts with CXADR antigen 1" /protein_id="DAA22370.1" /db_xref="GI:296480255" /db_xref="GeneID:509575" /translation="MFYPLKVILIPVLLGYSLGLDDLSISAVELTVHVGDSALLGCVS QSTGEKHVTKVDWMFSSGKHIEDEYVLFYYSNISVPVGHFQNRVRLVGDILHHDGSLL LQNVEETDQGNFTCEIRFQMESLVFKKVVVLHVLPEEPKELMVHVGDSTQMRCVFHST EEKHMSRADWMFSSGEPAKEEIVLRYQRKLRTPMGYSQNWGRFLNRVNLVGDTSRNDV SIMLHGVKESDGGNYTCHIYLGNLTFRKTTVLQVILKESRTLVTPVALRPEILGGNQL VIIVGIVCATILLLPVLILIVKMAYGNKSSVTSTTLVKSLENTEKACAEKHIYSSITT QEVNDEEESSGKSEATYMTMNPVWPSLRSAPISPPDQRSTWGMAKTEQAF" gene complement(7906784..7937419) /gene="MPZL3" /locus_tag="BOS_14366" /db_xref="GeneID:521837" mRNA complement(join(7906784..7909614,7912388..7912448, 7914233..7914398,7916701..7916911,7920400..7920566, 7937310..7937419)) /gene="MPZL3" /locus_tag="BOS_14366" /product="myelin protein zero-like protein 3 precursor" /db_xref="GeneID:521837" CDS complement(join(7909588..7909614,7912388..7912448, 7914233..7914398,7916701..7916911,7920400..7920566, 7937310..7937382)) /gene="MPZL3" /locus_tag="BOS_14366" /inference="similar to AA sequence:RefSeq:NP_001091520.1" /note="myelin protein zero-like protein 3" /codon_start=1 /product="myelin protein zero-like protein 3 precursor" /protein_id="DAA22383.1" /db_xref="GI:296480268" /db_xref="GeneID:521837" /translation="MQQSGVPGSRGCALCPLLGVLFFQGVYVIFSLEIKADAHVRGYV GENIKLRCTFKSSSSITDKLTIDWTYRPPSSSRTESIFHYQSFQYPTTAGTFRDRISW VGDVYKGDASISINNPTMKDNGTFSCAVKNPPDVHHNIPATELTVTERGFGTMLSSVA LLSILVFIPSTVVVILLLVRMGRKSAGLKKRSKSGYKKSSIEVSDDTDQEGDDCMAKL CVRCAECVDSDYEETY" assembly_gap 7921122..7921221 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7922276..7922375 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7923235..7923334 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7924217..7924316 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7925227..7925326 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7926232..7926331 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene complement(<7939427..>7949970) /gene="MPZL2" /locus_tag="BOS_14376" /db_xref="GeneID:540423" mRNA complement(join(<7939427..7940626,7942229..7942303, 7945169..7945316,7947747..7947957,7948416..7948582, 7949672..>7949970)) /gene="MPZL2" /locus_tag="BOS_14376" /product="myelin protein zero-like protein 2 precursor" /db_xref="GeneID:540423" CDS complement(join(7942240..7942303,7945169..7945316, 7947747..7947957,7948416..7948582,7949672..7949729)) /gene="MPZL2" /locus_tag="BOS_14376" /note="epithelial V-like antigen 1; myelin protein zero-like protein 2" /codon_start=1 /product="myelin protein zero-like protein 2 precursor" /protein_id="DAA22393.1" /db_xref="GI:296480278" /db_xref="GeneID:540423" /translation="MYGKSPTRAVLFLLGLQLTALWPTAAVEIYTPRVLEAVNGTDVR LKCTFSSFAPVGDALTVTWNFRPRDGGPEQFVFYYHVDPFKPMSGRFKDRVAWDGNPE RYDVSILLWKLQFDDNGTYTCQVKNPPDVDGLIGEIQLSVVQTVRFSEIHFLALAIGS ACALMVIIVIVVVLFQHFRKKRRAERAHRVVEIKSKEEEKLNQEKKASVSLEYTD" assembly_gap 7973947..7974046 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 7975205..7975304 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene <8002372..>8012987 /gene="CD3E" /locus_tag="BOS_14337" /db_xref="GeneID:281054" mRNA join(<8002372..8002416,8002529..8002637,8004735..8004752, 8009513..8009530,8009956..8010177,8011022..8011189, 8011533..8011579,8012320..>8012987) /gene="CD3E" /locus_tag="BOS_14337" /product="T-cell surface glycoprotein CD3 epsilon chain precursor" /db_xref="GeneID:281054" CDS join(8002589..8002637,8004735..8004752,8009513..8009530, 8009956..8010177,8011022..8011189,8011533..8011579, 8012320..8012376) /gene="CD3E" /locus_tag="BOS_14337" /note="antigen CD3E, epsilon polypeptide (TiT3 complex); T-cell surface glycoprotein CD3 epsilon chain" /codon_start=1 /product="T-cell surface glycoprotein CD3 epsilon chain precursor" /protein_id="DAA22354.1" /db_xref="GI:296480239" /db_xref="GeneID:281054" /translation="MQSGNLWRALGLCLLLVGAWAQDADEQKPYEVSISGNTVELTCP REFEGEIHWKQNDEQMKGYTGKQLLLENFSEMDNSGYYQCYMTEGNKEAAHTLYLKAR VCQNCMEVNLMEVATIIVVDICVTLGLLLLVYYWSKSRKAKASPMTRGAGAGGRPRGQ NKGRPPPVPNPDYEPIRKGQRDLYAGLNQRGV" gene complement(<8017244..>8021410) /gene="CD3D" /locus_tag="BOS_14336" /db_xref="GeneID:281053" mRNA complement(join(<8017244..8018260,8018506..8018549, 8018820..8018951,8019372..8019581,8021326..>8021410)) /gene="CD3D" /locus_tag="BOS_14336" /product="T-cell surface glycoprotein CD3 delta chain precursor" /db_xref="GeneID:281053" CDS complement(join(8018195..8018260,8018506..8018549, 8018820..8018951,8019372..8019581,8021326..8021380)) /gene="CD3D" /locus_tag="BOS_14336" /note="antigen CD3D, delta polypeptide (TiT3 complex); T-cell receptor T3 delta chain; T-cell surface glycoprotein CD3 delta chain" /codon_start=1 /product="T-cell surface glycoprotein CD3 delta chain precursor" /protein_id="DAA22353.1" /db_xref="GI:296480238" /db_xref="GeneID:281053" /translation="MEHSRFLSCLILAALLSQVNPRILKVLEPEDKVMLECNSSITLL QGTEGQEVSGNNKTRDLGKRIQDPRGMYRCGENTQQLILQVYYRMCQNCVELDTATLA GMIITDIIATVLLALGVYCFAGHETGRFSRAADTQALMGNDQLYQPLRERNDAQYSRL GDKWARNK" gene <8023377..>8034883 /gene="CD3G" /locus_tag="BOS_14338" /db_xref="GeneID:281055" mRNA join(<8023377..8023499,8026926..8026949,8027651..8027866, 8028418..8028549,8029645..8029688,8030465..8030532, 8034352..>8034883) /gene="CD3G" /locus_tag="BOS_14338" /product="T-cell surface glycoprotein CD3 gamma chain precursor" /db_xref="GeneID:281055" CDS join(8023445..8023499,8026926..8026949,8027651..8027866, 8028418..8028549,8029645..8029688,8030465..8030515) /gene="CD3G" /locus_tag="BOS_14338" /note="antigen CD3G, gamma polypeptide; T-cell receptor T3 gamma chain; CD3G antigen, gamma polypeptide; T-cell surface glycoprotein CD3 gamma chain" /codon_start=1 /product="T-cell surface glycoprotein CD3 gamma chain precursor" /protein_id="DAA22355.1" /db_xref="GI:296480240" /db_xref="GeneID:281055" /translation="MEQGKHLAGLILAVFLLQGTMAHVKEVKVDDNREDGSVILICVT NDTTITWLKDVEQIGSGDTKKNTWNLGSSTKDPRGIYKCEGSNNQSKSLQIYYRMCQN CIELNPSTVAGFIFTEIVSIFLLAVGVYFIAGQEGVRQSRASDKQTLLNNDQLYQPLK EREDDQYSHLRKN" gene 8037627..8077525 /gene="UBE4A" /locus_tag="BOS_14365" /db_xref="GeneID:517544" mRNA join(8037627..8037669,8047649..8047810,8052074..8052247, 8052858..8052970,8054411..8054563,8055062..8055221, 8055440..8055642,8055977..8056168,8057111..8057444, 8058498..8058618,8060392..8060696,8062260..8062392, 8063724..8063911,8066080..8066180,8066290..8066403, 8067873..8068047,8073510..8073690,8074165..8074312, 8075429..8075586,8077329..8077525) /gene="UBE4A" /locus_tag="BOS_14365" /product="ubiquitin conjugation factor E4 A" /db_xref="GeneID:517544" CDS join(8047690..8047810,8052074..8052247,8052858..8052970, 8054411..8054563,8055062..8055221,8055440..8055642, 8055977..8056168,8057111..8057444,8058498..8058618, 8060392..8060696,8062260..8062392,8063724..8063911, 8066080..8066180,8066290..8066403,8067873..8068047, 8073510..8073690,8074165..8074312,8075429..8075586, 8077329..8077458) /gene="UBE4A" /locus_tag="BOS_14365" /codon_start=1 /product="ubiquitin conjugation factor E4 A" /protein_id="DAA22382.1" /db_xref="GI:296480267" /db_xref="GeneID:517544" /translation="MTDQENNNNISSNPFAALFGSLADAKQFAAIQKEQLKQQSDELP ASPDDSDNSVSESLDEFDYSVAEISRSFRSQQEICEQLNINHMIQRIFLITLDNSDPS LKSGNGIPSRCVYLEEMAVDLEDQDWLDMNNVEQAVFTRLLLQDPGNHLINMTSSTTL NLSADRDAGEKHIFCYLYSCFQRAKEEITKVPENLLPFAVQCRNLTVSNTRTVLLTPE IYVDQNIHEQLVDLMVEAILGGHFESVAEFLDEVIEALILDEEVRTFPEVMIPVFDIL SSRIKDLELCQILLYAYLDILLYFTKQKDMAKVFVDYIQPKDPSNGQMYQKTLLGVIL NISCLLKTPGVIENHGYFLNPSRSSPQEIKVQEANIHQFMARYHEKIYQMLKNLLQLS PETKHCILSWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFC KPRSSRLLTFNPTYCALKELNDEERKIKNVHMRGLDKETCLIPAVQEPKFPQNYNLVT ENLVLTEYTLYLGFHRLHDQMVKINQNLHRLQVAWRDAQQSSSPAADNLREQFERLMT VYLSTKTAMTEPQMLQNCLNLQVSMAVLLVQLAIGNEGSQLMELTFPLPDGYSSLAYV PEFFADNLGDFLIFLRRFADDILETSADSLEHVLHFITIFTGSIERMKNPHLRAKLAE VLEAVMPHMDQTPNPLVSSVFHRKRVFCNFPYASHLAEALIKVFVDIEFTGDPHQFEQ KFNYRRPMYPILKYMWGTDTYRESIKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFL LDEAIQYLSKIKIQQIEKDRGEWDNLTPEARREKEAGLQMFGQLARFHNIMSNETIGT LAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSD ICTIYLNLGDEENFCATVPKDGRSYSPTLFAQTVRVLKKINKPGNMIVAFSNLAERIK SLADLQQQEEETYADACDEFLDPIMSTLMSDPVVLPSSRVTVDRSTIARHLLSDQTDP FNRSPLTMDQIRPNTELKEKIQRWLAERKQQQKEQLE" gene 8082816..8090918 /gene="ATP5L" /locus_tag="BOS_14364" /db_xref="GeneID:515696" mRNA join(8082816..8082898,8089152..8089312,8090716..8090918) /gene="ATP5L" /locus_tag="BOS_14364" /product="ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G" /db_xref="GeneID:515696" CDS join(8082847..8082898,8089152..8089312,8090716..8090817) /gene="ATP5L" /locus_tag="BOS_14364" /EC_number="3.6.1.14" /inference="similar to AA sequence:RefSeq:NP_001019721.3" /note="F1Fo-ATP synthase complex Fo membrane domain g subunit; ATPase subunit g; ATP synthase subunit g, mitochondrial" /codon_start=1 /transl_table=2 /product="ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G" /protein_id="DAA22381.1" /db_xref="GI:296480266" /db_xref="GeneID:515696" /translation="MAQFVRNLAEKAPALVNAAVTYSKPRLATFWYYAKVELVPPTPA EIPTAIQSLKKIINSAKTGSFKQLTVKEALLNGLVATEVWMWFYVGEIMGKRGIIGYD VW" assembly_gap 8113059..8113158 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8114421..8114520 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8115490..8115586 /estimated_length=97 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8116675..8116774 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8117783..8117882 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8118804..8118903 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8120162..8120261 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8121995..8122094 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8123669..8123768 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8124867..8124966 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8126645..8126744 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8128583..8128682 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8129660..8129759 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8130748..8130847 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8132437..8132536 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8133624..8134333 /estimated_length=710 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8135446..8135446 /estimated_length=1 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8136693..8137495 /estimated_length=803 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8139317..8139416 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8140939..8141038 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8143059..8143158 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8145000..8145099 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8146066..8146165 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8147371..8147470 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8148866..8148965 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8150075..8150174 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8151771..8151870 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8153091..8153190 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8154265..8154364 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8155473..8155572 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8156536..8156635 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8157540..8157639 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8159134..8159233 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8160727..8160826 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8161888..8162517 /estimated_length=630 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8164057..8164156 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8165233..8165332 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8166312..8166411 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8168202..8169383 /estimated_length=1182 /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8171587..8171686 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8172949..8173048 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8174106..8174205 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8176195..8176294 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8177487..8177586 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8179008..8179107 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8180256..8180355 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" assembly_gap 8182061..8182160 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="unspecified" gene 8183448..8184352 /gene="LOC784741" /locus_tag="BOS_14403" /note="The sequence of the transcript was modified to remove a frameshift represented in this assembly." /db_xref="GeneID:784741" mRNA 8183448..8184352 /gene="LOC784741" /locus_tag="BOS_14403" /product="hypothetical protein" /db_xref="GeneID:784741" CDS 8183448..8183902 /gene="LOC784741" /locus_tag="BOS_14403" /inference="ab initio prediction:GNOMON" /exception="annotated by transcript or proteomic data" /codon_start=1 /product="hypothetical protein" /protein_id="DAA22416.1" /db_xref="GI:296480301" /db_xref="GeneID:784741" /translation="MSEQAEKSSSVRERPARQSSPEKPSEKELKQMKWLDRQLKQLSF QNPGPQVANFNPEVRQQIKKGQMAKKNELVPXKREVNKYDEKGRLTFNKADLCDCLDE GCLGCFYPCPKCNSTKCGPTCRCNRRWAYDTIVDENGEVISKMPFDLSE" CONTIG join(DAAA02040260.1:1..42515,gap(unk100), complement(DAAA02040261.1:1..1044),gap(unk100), DAAA02040262.1:1..6193,gap(unk100), complement(DAAA02040263.1:1..1399),gap(1280), complement(DAAA02040264.1:1..2723),gap(unk100), complement(DAAA02040265.1:1..57534),gap(unk100), complement(DAAA02040266.1:1..14264),gap(607), complement(DAAA02040267.1:1..19149),gap(648), complement(DAAA02040268.1:1..31114),gap(581), complement(DAAA02040269.1:1..74709),gap(172), complement(DAAA02040270.1:1..9719),gap(7), complement(DAAA02040271.1:1..56456),gap(unk100), complement(DAAA02040272.1:1..8209),gap(524), complement(DAAA02040273.1:1..1633),gap(unk100), complement(DAAA02040274.1:1..56113),gap(129), complement(DAAA02040275.1:1..3844),gap(101), complement(DAAA02040276.1:1..98228),gap(2056), complement(DAAA02040277.1:1..52126),gap(94), complement(DAAA02040278.1:1..99196),gap(unk100), complement(DAAA02040279.1:1..9156),gap(unk100), complement(DAAA02040280.1:1..142558),gap(964), complement(DAAA02040281.1:1..277240),gap(736), complement(DAAA02040282.1:1..17817),gap(963), complement(DAAA02040283.1:1..21057),gap(unk100), complement(DAAA02040284.1:1..66237),gap(563), complement(DAAA02040285.1:1..113958),gap(unk100), complement(DAAA02040286.1:1..1006),gap(unk100), complement(DAAA02040287.1:1..41594),gap(unk100), complement(DAAA02040288.1:1..36746),gap(825), complement(DAAA02040289.1:1..10101),gap(253), complement(DAAA02040290.1:1..46237),gap(76), complement(DAAA02040291.1:1..72228),gap(unk100), complement(DAAA02040292.1:1..1182),gap(unk100), DAAA02040293.1:1..9749,gap(unk100), complement(DAAA02040294.1:1..50594),gap(547), complement(DAAA02040295.1:1..35156),gap(498), complement(DAAA02040296.1:1..44079),gap(164), complement(DAAA02040297.1:1..77409),gap(unk100), complement(DAAA02040298.1:1..407576),gap(42), complement(DAAA02040299.1:1..59440),gap(163), complement(DAAA02040300.1:1..59790),gap(872), complement(DAAA02040301.1:1..9693),gap(unk100), complement(DAAA02040302.1:1..99071),gap(unk100), complement(DAAA02040303.1:1..160877),gap(91), complement(DAAA02040304.1:1..21050),gap(unk100), complement(DAAA02040305.1:1..17750),gap(unk100), complement(DAAA02040306.1:1..105940),gap(381), complement(DAAA02040307.1:1..13583),gap(147), complement(DAAA02040308.1:1..13125),gap(unk100), complement(DAAA02040309.1:1..221127),gap(unk100), complement(DAAA02040310.1:1..18499),gap(unk100), complement(DAAA02040311.1:1..60783),gap(775), complement(DAAA02040312.1:1..65051),gap(355), complement(DAAA02040313.1:1..111629),gap(248), complement(DAAA02040314.1:1..27983),gap(unk100), complement(DAAA02040315.1:1..81001),gap(711), complement(DAAA02040316.1:1..69314),gap(469), complement(DAAA02040317.1:1..70140),gap(unk100), complement(DAAA02040318.1:1..1256),gap(unk100), complement(DAAA02040319.1:1..8230),gap(unk100), complement(DAAA02040320.1:1..29998),gap(39), complement(DAAA02040321.1:1..163377),gap(unk100), DAAA02040322.1:1..1644,gap(unk100), complement(DAAA02040323.1:1..152596),gap(529), complement(DAAA02040324.1:1..134232),gap(389), complement(DAAA02040325.1:1..73954),gap(unk100), complement(DAAA02040326.1:1..77875),gap(554), DAAA02040327.1:1..1165,gap(185), complement(DAAA02040328.1:1..46906),gap(unk100), complement(DAAA02040329.1:1..19519),gap(unk100), complement(DAAA02040330.1:1..2915),gap(11), complement(DAAA02040331.1:1..5326),gap(218), complement(DAAA02040332.1:1..11772),gap(381), complement(DAAA02040333.1:1..1972),gap(unk100), complement(DAAA02040334.1:1..996),gap(unk100), complement(DAAA02040335.1:1..961),gap(unk100), complement(DAAA02040336.1:1..894),gap(unk100), complement(DAAA02040337.1:1..125433),gap(122), complement(DAAA02040338.1:1..37036),gap(797), complement(DAAA02040339.1:1..11289),gap(unk100), complement(DAAA02040340.1:1..60987),gap(unk100), DAAA02040341.1:1..114452,gap(unk100),DAAA02040342.1:1..21321, gap(unk100),DAAA02040343.1:1..10360,gap(98), DAAA02040344.1:1..45596,gap(unk100),DAAA02040345.1:1..244750, gap(254),DAAA02040346.1:1..31850,gap(421),DAAA02040347.1:1..79038, gap(79),DAAA02040348.1:1..178190,gap(unk100), DAAA02040349.1:1..2918,gap(unk100), complement(DAAA02040350.1:1..3792),gap(unk100), DAAA02040351.1:1..3809,gap(unk100), complement(DAAA02040352.1:1..1539),gap(unk100), complement(DAAA02040353.1:1..3191),gap(unk100), DAAA02040354.1:1..2078,gap(unk100), complement(DAAA02040355.1:1..3789),gap(unk100), DAAA02040356.1:1..1514,gap(unk100), complement(DAAA02040357.1:1..1296),gap(unk100), complement(DAAA02040358.1:1..3777),gap(unk100), DAAA02040359.1:1..3605,gap(unk100), complement(DAAA02040360.1:1..1235),gap(unk100), DAAA02040361.1:1..3275,gap(unk100),DAAA02040362.1:1..1119, gap(unk100),DAAA02040363.1:1..3183,gap(unk100), DAAA02040364.1:1..17331,gap(unk100),DAAA02040365.1:1..4233, gap(356),DAAA02040366.1:1..51405,gap(unk100), DAAA02040367.1:1..34174,gap(77),DAAA02040368.1:1..12904, gap(unk100),DAAA02040369.1:1..71217,gap(unk100), DAAA02040370.1:1..2794,gap(unk100),DAAA02040371.1:1..53482, gap(unk100),DAAA02040372.1:1..74282,gap(899), complement(DAAA02040373.1:1..1009),gap(unk100), complement(DAAA02040374.1:1..986),gap(unk100), DAAA02040375.1:1..987,gap(unk100),DAAA02040376.1:1..240775, gap(320),DAAA02040377.1:1..41531,gap(611),DAAA02040378.1:1..17870, gap(258),DAAA02040379.1:1..2769,gap(819),DAAA02040380.1:1..41673, gap(89),DAAA02040381.1:1..13296,gap(477),DAAA02040382.1:1..37077, gap(241),DAAA02040383.1:1..6195,gap(666),DAAA02040384.1:1..12662, gap(363),DAAA02040385.1:1..76633,gap(unk100), DAAA02040386.1:1..27705,gap(127),DAAA02040387.1:1..12323,gap(242), DAAA02040388.1:1..45418,gap(unk100),DAAA02040389.1:1..694591, gap(unk100),DAAA02040390.1:1..374693,gap(unk100), DAAA02040391.1:1..37235,gap(207),DAAA02040392.1:1..110781, gap(unk100),DAAA02040393.1:1..88402,gap(312), DAAA02040394.1:1..119728,gap(565),DAAA02040395.1:1..23577, gap(unk100),DAAA02040396.1:1..4513,gap(unk100), DAAA02040397.1:1..122441,gap(869),DAAA02040398.1:1..32539, gap(unk100),DAAA02040399.1:1..50994,gap(unk100), DAAA02040400.1:1..28371,gap(125),DAAA02040401.1:1..10627, gap(unk100),DAAA02040402.1:1..17619,gap(unk100), DAAA02040403.1:1..46610,gap(unk100),DAAA02040404.1:1..82323, gap(unk100),complement(DAAA02040405.1:1..1054),gap(unk100), complement(DAAA02040406.1:1..859),gap(unk100), complement(DAAA02040407.1:1..882),gap(unk100), complement(DAAA02040408.1:1..910),gap(unk100), complement(DAAA02040409.1:1..905),gap(unk100), DAAA02040410.1:1..47615,gap(unk100),DAAA02040411.1:1..1158, gap(unk100),DAAA02040412.1:1..137754,gap(unk100), complement(DAAA02040413.1:1..1262),gap(unk100), complement(DAAA02040414.1:1..969),gap(97), complement(DAAA02040415.1:1..1088),gap(unk100), DAAA02040416.1:1..1008,gap(unk100), complement(DAAA02040417.1:1..921),gap(unk100), complement(DAAA02040418.1:1..1258),gap(unk100), DAAA02040419.1:1..1733,gap(unk100), complement(DAAA02040420.1:1..1574),gap(unk100), DAAA02040421.1:1..1098,gap(unk100),DAAA02040422.1:1..1678, gap(unk100),DAAA02040423.1:1..1838,gap(unk100), DAAA02040424.1:1..977,gap(unk100),DAAA02040425.1:1..988, gap(unk100),complement(DAAA02040426.1:1..1589),gap(unk100), complement(DAAA02040427.1:1..1087),gap(710),DAAA02040428.1:1..1112, gap(1),complement(DAAA02040429.1:1..1246),gap(803), DAAA02040430.1:1..1821,gap(unk100),DAAA02040431.1:1..1522, gap(unk100),complement(DAAA02040432.1:1..2020),gap(unk100), DAAA02040433.1:1..1841,gap(unk100),DAAA02040434.1:1..966, gap(unk100),DAAA02040435.1:1..1205,gap(unk100), complement(DAAA02040436.1:1..1395),gap(unk100), DAAA02040437.1:1..1109,gap(unk100),DAAA02040438.1:1..1596, gap(unk100),complement(DAAA02040439.1:1..1220),gap(unk100), complement(DAAA02040440.1:1..1074),gap(unk100), DAAA02040441.1:1..1108,gap(unk100), complement(DAAA02040442.1:1..963),gap(unk100), complement(DAAA02040443.1:1..904),gap(unk100), DAAA02040444.1:1..1494,gap(unk100), complement(DAAA02040445.1:1..1493),gap(unk100), DAAA02040446.1:1..1061,gap(630),DAAA02040447.1:1..1539,gap(unk100), DAAA02040448.1:1..1076,gap(unk100), complement(DAAA02040449.1:1..979),gap(unk100), DAAA02040450.1:1..1790,gap(1182),DAAA02040451.1:1..2203, gap(unk100),complement(DAAA02040452.1:1..1262),gap(unk100), DAAA02040453.1:1..1057,gap(unk100),DAAA02040454.1:1..1989, gap(unk100),DAAA02040455.1:1..1192,gap(unk100), complement(DAAA02040456.1:1..1421),gap(unk100), DAAA02040457.1:1..1148,gap(unk100),DAAA02040458.1:1..1705, gap(unk100),DAAA02040459.1:1..3404) //