LOCUS       GAMT01002207            1217 bp    mRNA    linear   TSA 22-AUG-2013
DEFINITION  TSA: Callithrix jacchus BLADDER_07552 mRNA sequence.
ACCESSION   GAMT01002207
VERSION     GAMT01002207.1
DBLINK      BioProject: PRJNA203643
            Sequence Read Archive: SRR866208
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Callithrix jacchus (white-tufted-ear marmoset)
  ORGANISM  Callithrix jacchus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Platyrrhini; Cebidae; Callitrichinae; Callithrix.
REFERENCE   1  (bases 1 to 1217)
  AUTHORS   Maudhoo,M.D., Ren,D., Gradnigo,J.S., Gibbs,R.M., Lubker,A.C.,
            Moriyama,E.N., French,J.A. and Norgren,R.B. Jr.
  TITLE     De novo assembly of the common marmoset transcriptome from NextGen
            mRNA sequences
  JOURNAL   Gigascience 3, 14 (2014)
   PUBMED   25243066
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1217)
  AUTHORS   Maudhoo,M.D., Ren,D., Grandnigo,J.S., Gibbs,R.M., Lubker,A.C.,
            Moriyama,E.N., French,J.A. and Norgren,R.B. Jr.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2013) Department of Genetics, Cell Biology &
            Anatomy, University of Nebraska Medical Center, 985805 Nebraska
            Medical Center, Omaha, NE 68198-5805, USA
COMMENT     Paired-end, 101 bp sequencing was performed on the Illumina
            platform. All reads were aligned with the human RefSeq mRNA
            transcripts using BLAST. Any reads with an alignment length
            difference with respect to the human reference sequence of 15 or
            greater were removed prior to assembly. For a given pair of reads,
            if one sequence was filtered, its pair was also filtered. The
            assembler used was Velvet followed by Oases. Velveth was performed
            as recommended and the kmer was set at 31. The output files from
            velveth were passed to velvetg. After performing velvetg, the
            working directory was passed to oases where the final assembly was
            performed. Default parameters were used for velvetg and oases.
            
            ##Assembly-Data-START##
            Assembly Method       :: Velvet 1.2.08; Oases 0.2.08
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1217
                     /organism="Callithrix jacchus"
                     /mol_type="mRNA"
                     /isolation_source="2218"
                     /db_xref="taxon:9483"
                     /tissue_type="bladder"
     gene            1..1217
                     /gene="TRADD"
     CDS             1..939
                     /gene="TRADD"
                     /codon_start=1
                     /product="tumor necrosis factor receptor type 1-associated
                     DEATH domain protein"
                     /protein_id="JAB09654.1"
                     /db_xref="GI:532215203"
                     /translation="MAAGQNGHEECVGSAYLFVESSLDKVVLSDAYVHPQQKMAVYRA
                     LQTALAESGGSPDVLQMLKIHRSDPQLIVQLRFCGRQPCSRFLRAYREGALCAALQRS
                     LAAAVSQHSLSLQLELRAGAERLDALLADEEYCLSCILAQQPDRLRDEELAELEDALR
                     NLKCGLGAQGGDREVSLDPSQLPVPSLSEVKPRPPPTPAQTFLFQGQPVVNRPLSLQD
                     QQTFARSVGLKWRKVGRSLQRSCRALRDPALDSLAYEYEREGLYEQAFQLLRRFVQAE
                     GRRATLQRLVEALEENELTSLAEDLLGLTDPNGSLA"
BASE COUNT          204 a          370 c          416 g          227 t
ORIGIN      
        1 atggcagctg ggcaaaatgg gcacgaagag tgtgtgggca gcgcatacct gtttgtggag
       61 tcctcgctgg acaaggtggt cctgtcggat gcctacgtgc acccccagca gaagatggca
      121 gtgtacaggg ctttgcagac tgccttggca gagagcggtg ggagcccgga cgtgctgcag
      181 atgctgaaga tccatcgcag cgacccgcag ctgatcgtgc agttgcgatt ctgtgggcgc
      241 cagccctgca gccgcttcct ccgcgcctac cgcgaggggg cgctatgcgc cgcgctgcag
      301 aggagcctgg cggccgccgt ctcccaacac tcgctatcgc tgcaactgga gctgcgcgcc
      361 ggcgccgaac ggctggacgc tttgctggcg gacgaggagt actgtttgag ttgcatccta
      421 gcccagcagc ccgaccggct ccgggacgaa gaactggctg agctggagga tgcactgagg
      481 aacctgaagt gcggcttggg ggcccagggt ggcgacaggg aggtctcttt ggacccctct
      541 cagctccccg tgccctctct gtcggaggtg aagccgcggc cgcctccaac gcctgcccag
      601 acttttctgt tccagggtca gcctgtagtg aaccggccgc tgagcctgca ggaccaacag
      661 acgttcgcac gctccgtggg cctaaagtgg cgcaaggtgg ggcgctcgct gcagcggagc
      721 tgcagagcgc tgcgggaccc ggcgctggac tcgctggcct atgagtacga gcgcgagggg
      781 ttgtatgagc aggccttcca gctgctgcgg cgcttcgtgc aggccgaggg ccgccgcgcc
      841 acgctgcagc gcctggtgga ggcacttgag gagaatgagc tcaccagcct ggcagaggac
      901 ttgctgggcc tgactgatcc caatggcagc ctggcctaga ccaggggtgc cgccagcttt
      961 tggagaacct ggatggccct agggttcctt ctgctgctat tgctgaaccc ttgtccatcc
     1021 acgggaccct gagatcccac ttggcctatc tgctggacct gctgaggcag ggttgactgc
     1081 cttccccagg agccagacca gcacccaccg agccccctgg gggtgcacca ttggggattc
     1141 tgcctcaggt actttgatag agtgtgtggg ggacctgctt cggagatcag cctcacctgt
     1201 aagggttatt gccgagg
//