LOCUS GAMR01002683 3237 bp mRNA linear TSA 22-AUG-2013 DEFINITION TSA: Callithrix jacchus SAMPLE1_10064 mRNA sequence. ACCESSION GAMR01002683 VERSION GAMR01002683.1 DBLINK BioProject: PRJNA203643 Sequence Read Archive: SRR867043 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Callithrix jacchus (white-tufted-ear marmoset) ORGANISM Callithrix jacchus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix. REFERENCE 1 (bases 1 to 3237) AUTHORS Maudhoo,M.D., Ren,D., Gradnigo,J.S., Gibbs,R.M., Lubker,A.C., Moriyama,E.N., French,J.A. and Norgren,R.B. Jr. TITLE De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences JOURNAL Gigascience 3, 14 (2014) PUBMED 25243066 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3237) AUTHORS Maudhoo,M.D., Ren,D., Grandnigo,J.S., Gibbs,R.M., Lubker,A.C., Moriyama,E.N., French,J.A. and Norgren,R.B. Jr. TITLE Direct Submission JOURNAL Submitted (09-AUG-2013) Department of Genetics, Cell Biology & Anatomy, University of Nebraska Medical Center, 985805 Nebraska Medical Center, Omaha, NE 68198-5805, USA COMMENT Paired-end, 101 bp sequencing was performed on the Illumina platform. All reads were aligned with the human RefSeq mRNA transcripts using BLAST. Any reads with an alignment length difference with respect to the human reference sequence of 15 or greater were removed prior to assembly. For a given pair of reads, if one sequence was filtered, its pair was also filtered. The assembler used was Velvet followed by Oases. Velveth was performed as recommended and the kmer was set at 31. The output files from velveth were passed to velvetg. After performing velvetg, the working directory was passed to oases where the final assembly was performed. Default parameters were used for velvetg and oases. ##Assembly-Data-START## Assembly Method :: Velvet 1.2.08; Oases 0.2.08 Sequencing Technology :: Illumina HiSeq ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3237 /organism="Callithrix jacchus" /mol_type="mRNA" /isolation_source="2219" /db_xref="taxon:9483" /tissue_type="cerebral cortex" gene 1..3237 /gene="CAB39" CDS 419..1444 /gene="CAB39" /codon_start=1 /product="calcium-binding protein 39" /protein_id="JAB31249.1" /db_xref="GI:532344113" /translation="MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVS KNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIF NNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKII LWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL HSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFH VFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLK RPAQQEA" BASE COUNT 947 a 665 c 734 g 891 t ORIGIN 1 gtcaaagccg ggctcgggcc gcgagtgggg cgcggggatc ggggagcggc gcggcctggg 61 agacacagaa ccttcaggcg ccggggcggg ggcataggcg aagactaagg cggcgtcgag 121 tcccgcagca gcagccgcag cccgagtgag agcagcaccg cggcagccgc cgcgggagcc 181 cctgggccgc cgtccgcccg tgcagccgcc gccgcgggag cccgtcgcct gaagcaggag 241 cgggcggaag acaacggagg ggcccagcgt ccgagccacg ccgcggggac tgaacgagca 301 gcccgaggcg gcggcagccg aggacgggga cggcgacgac gcggaggcag agaagggaac 361 gcccagccca gccccgtagc acaggcggag tgcagcggag gcccctgccc ctgccgtcat 421 gccgttcccg ttcgggaagt ctcacaaatc tccagcagac attgtgaaga atctgaagga 481 aagcatggcc gttctggaaa agcaagacat ttctgacaaa aaagcagaaa aggctacaga 541 agaagtttcc aaaaatctgg ttgccatgaa agaaattctg tatggcacaa atgaaaaaga 601 gcctcagaca gaagcagtgg cccagcttgc tcaagaactc tataatagtg ggcttcttag 661 caccctggta gctgatttac agctcattga ctttgagggc aaaaaagacg tggctcaaat 721 tttcaacaat attctcagaa gacaaattgg tacaagaact cctactgttg aatacatctg 781 cacccaacag aatattttgt tcatgttatt gaaagggtat gaatctccag aaatagcttt 841 aaattgtgga ataatgttaa gagaatgcat cagacatgaa ccacttgcaa aaatcatttt 901 gtggtcagaa cagttttatg atttcttcag atatgtcgaa atgtcaacat ttgacatagc 961 ttcagatgca tttgccacat tcaaggattt acttacaaga cataaattgc tcagtgcaga 1021 atttttggaa cagcattatg atagattttt cagtgaatat gagaagttac ttcattcaga 1081 aaattacgtg acaaaaagac agtcactcaa gcttctcggt gaactactac tagacagaca 1141 caacttcaca attatgacaa aatacatcag taaacctgag aacctcaagt taatgatgaa 1201 cctgctgcga gacaaaagtc gcaacatcca gtttgaggcc tttcacgttt ttaaggtgtt 1261 tgtagccaat cctaacaaga cacagcccat cctagacatc ctcctcaaga accagaccaa 1321 actcatagag ttcctcagca agtttcagaa tgacaggacg gaggatgagc agtttaatga 1381 cgagaagacc tatttagtta aacagatcag ggatttgaag agaccagctc agcaagaagc 1441 ttaatctcca gtaaacatct atattaaatc caaattcagc gtttgctgtt agctattcag 1501 catcaggcac tcttattgat tcatgaggaa cattactgct aatctactgt taagtgaacg 1561 gtttttcatt ttaccctttt gtttttcagt ccaggttgga gatcgtagct gctgctgctt 1621 gcacactagg gcacatgtgg gctttctctt gatctttgtg tcatttcaga attcaaagac 1681 tccgtgtgct gcgggagttc tgaacatggc tgggttcatg aaggcaaatg tatggatgag 1741 agtgtggttt agggaagagg gcattgatac gatcagatta gacctatgtg tttgcaccca 1801 tctttgctgg cgatctgagt gcagtgtggc atgcgcacac ctggcatccc tgcgtcagat 1861 cgcgcgcctt cactgaagga tgatcacgca gagctttatc tgaaatcaga ggggaactgt 1921 atccaaaaat gggagtttcg gggcagataa agttgacatg cgaataaatt gatactgaaa 1981 cttagcaact tcttaaaagt gtgaagaagc ctcataaggt cataaggaaa atgtatatat 2041 gcttttcaca gctttctaga atttttgaca tttgattttc ttgagacttg taaacctgga 2101 tatgttgaag agtatttgtt aattttactt tttgaagata ttttaaaaca gtagagctag 2161 caatgacacc ttgcatttca tttcaacact gcttacaggt ttcttttgta tataattctt 2221 agaatgctct tttcttttca atggtttaat ttgtacagca gaggaatgtt actgtagtag 2281 tatgtaacta tacctaatac tgagtttttg caaaaaacaa tgaatgctca tatgtaattg 2341 aaatacttca gatcacatga aaatgctgat ttaacattta agtatcacag cattaaaagg 2401 aaaaaaaagt aaaccaatcc tttgtattca gttacctaat ggggtgccat caataagcct 2461 agatccagcc ctggagctca gtcagccaca ctttcctgca tcctattggc cttattcatt 2521 taaagtgagt taacgaatcc gccagatctg tgaatgatag agattatgct aaattaatgc 2581 tgattctgtg tgtgtgtgtg tgtgtgtgtg tgaaatatat ggccagtgct tgtgttcttt 2641 ctttcctctg tagagcacct ttcctttctt agactaagta acccagtaca gtagttgtga 2701 aactgaataa tgaaaacttc tgcttctctt agaaaaagaa gagctcctag tcataggtgt 2761 cctctgggga aatttatttt ttttaatgtc ctgttcctta atgctgcaaa ttatcagtat 2821 ttataaagta actgattttg caccactttt ttgttactgt gaccatggca gaacaatgtc 2881 ttctagactc tatctatgta aagttattag aatggtctct gttcatttta gtaatacaaa 2941 gatcacaact aacaacttaa caaatcagag tttgccagtt caaattcagc atggctgcag 3001 ctgattaaga aattgatacg attattcttt gctagcctct ctaactaatg gaattatata 3061 ttggccagta aaatgggcct cccaattgct gtttcagcag gcttttaaac cttcaaggaa 3121 caccagcgaa gatggttcca gagcatagag atagatttta tttttattaa aacggcagtc 3181 tgtatcctaa ttggctcttc ctgagactgt ctgtaccaga atctgtgtga gttaatt //