LOCUS GABE01008189 2668 bp mRNA linear TSA 31-OCT-2012 DEFINITION TSA: Pan troglodytes Chimpanzee_0128441 mRNA sequence. ACCESSION GABE01008189 VERSION GABE01008189.1 DBLINK BioProject: PRJNA173089 Sequence Read Archive: SRR544874 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Pan troglodytes (chimpanzee) ORGANISM Pan troglodytes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan. REFERENCE 1 (bases 1 to 2668) AUTHORS Maudhoo,M.D., Meehan,D.T. and Norgren,R.B. Jr. TITLE De novo assembly of the reference chimpanzee transcriptome from NextGen mRNA sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 2668) AUTHORS Maudhoo,M.D., Meehan,D.T. and Norgren,R.B. Jr. TITLE Direct Submission JOURNAL Submitted (15-OCT-2012) Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, 985805 Nebraska Medical Center, Omaha, NE 68198-5805, USA COMMENT Paired-end, 101 bp sequencing was performed on the Illumina platform. All reads were aligned with the human RefSeq mRNA transcripts using BLAST. Any reads with an alignment length difference with respect to the human reference sequence of 2 or greater were removed prior to assembly. For a given pair of reads, if one sequence was filtered, its pair was also filtered. Velveth was performed as recommended. kmer was set at 31. The output files from Velveth were passed to Velvetg. After performing Velvetg, this output file was passed to Oases where the final assembly was performed. Default parameters were used for Velvetg and Oases. ##Assembly-Data-START## Assembly Method :: Velvet 1.2.07; Oases 0.2.08 Sequencing Technology :: Illumina HiSeq ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2668 /organism="Pan troglodytes" /mol_type="mRNA" /isolation_source="Clint" /db_xref="taxon:9598" /cell_line="untransformed myoblast cells" /tissue_type="skeletal muscle" gene 1..2668 /gene="MAB21L2" CDS 1016..2095 /gene="MAB21L2" /codon_start=1 /product="mab-21-like 2" /protein_id="JAA36550.1" /db_xref="GI:410335207" /translation="MIAAQAKLVYQLNKYYTERCQARKAAIAKTIREVCKVVSDVLKE VEVQEPRFISSLSEIDARYEGLEVISPTEFEVVLYLNQMGVFNFVDDGSLPGCAVLKL SDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQAVDKCSYRDVVKMIADTSEVKL RIRERYVVQITPAFKCTGIWPRSAAQWPMPHIPWPGPNRVAEVKAEGFNLLSKECYSL TGKQSSAESDAWVLQFGEAENRLLMGGCRNKCLSVLKTLRDRHLELPGQPLNNYHMKT LLLYECEKHPRETDWDESCLGDRLNGILLQLISCLQCRRCPHYFLPNLDLFQGKPHSA LESAAKQTWRLAREILTNPKSLDKL" BASE COUNT 723 a 734 c 660 g 551 t ORIGIN 1 agagaagcag ggggagagcg gggcgagaaa gaggtcggag gggagaggag ggggagagac 61 gactcagaaa gtggaatctg taaaagcaac ctagaggaga agaaggaaaa ccctgaatcg 121 ttataactac accccagatg caacgcaagc aacgacttcg tcacactaaa acggattttg 181 tgagggccaa aagtataaat tacgaagcag aaatgattat caaacaactt ccagcggttt 241 gcacctaaag aaacacaagg agaacccact acaaacaaac aaacccagtc caaacaacgc 301 ctccagtagg aaaagaggaa aactgcgata acacgacccc ccgagaagag acgagaccaa 361 cacgctgaga ctgcggggcg tcagcaaacc tccaagtgca cggcggactg agttgtactt 421 cgcagctctc tggacattaa ttacctcctg caccttccaa tttgggggag ggtgaggaag 481 aaggcactca cctacactga gcgaagaagt cccatcagcg tggaagagaa gtttaagaat 541 gaaccactga atgtttcgct tttattttta aatttacttt ggcacttaaa aaacctcatt 601 tccagatttc tggacaatct cggctgcaga catctaagcc taaccttttg gtatcctgag 661 ttttttccct ctccttctcc ttcctcaccc ccaccccgct tctctcgcac acggtcatct 721 ttacatatca agagaaagca aaaaggttcc aagaggtact tttcttttta gaaaatcacc 781 ttttctcccc taattcttct gcagaagaaa agaggtttcg aaagagggaa aaggaaaaaa 841 caagccggct acggtatcag ccggtcagcc caggtggaaa acgagagtga aagtagggct 901 taacggggag cgcaccgcct ctttcgaaag ccgctgggcc accaccagtg cgtgagcctt 961 ggatccctca acgtattgcg agacgccggt gtatagcccg gacctgtgcc ccaacatgat 1021 cgccgctcag gccaagctgg tttaccagct caataagtac tacactgagc gctgtcaggc 1081 gcgcaaggcg gccatcgcca aaaccatccg agaggtctgt aaggtggtct cggacgtgct 1141 caaggaagtg gaggtgcagg agcctcgctt catcagctcc ttgagcgaga tcgatgcccg 1201 ctacgagggg ctcgaggtca tttcgcccac cgaatttgag gtggtgctct acctaaacca 1261 gatgggcgtc ttcaacttcg tggacgacgg ctcgctgccc ggctgcgcag tgctcaaact 1321 gagcgatggg cggaagcgga gcatgtctct ctgggtcgag ttcatcacgg cgtcgggcta 1381 tctctcagcg cgtaagatcc gctcgcgttt ccagacgctg gtggcccagg cggtggacaa 1441 gtgcagctat cgggatgtgg tcaagatgat cgcggacacc agcgaggtca agttgcgcat 1501 cagggagcgc tatgtggtgc aaatcactcc ggcgttcaag tgcaccggga tctggcctcg 1561 cagcgcggca cagtggccta tgccccacat cccctggccc ggccccaatc gggtggccga 1621 ggtcaaggcc gaagggttca acttgctctc gaaggagtgc tactcgctga ccggcaagca 1681 gagctcggca gagagcgacg cctgggtgct acagttcggg gaggcggaga accgcctgct 1741 gatgggcggc tgccgaaaca agtgcctctc agtgctgaag actctgcggg accgccacct 1801 ggagctaccc ggccagccgc tcaacaacta ccacatgaag acgctgctgc tgtacgagtg 1861 cgagaaacac ccacgagaaa cggactggga cgagtcgtgc ctgggcgacc ggctcaacgg 1921 catcctgctg cagctcatct cctgcctgca gtgccgccgc tgccctcact actttctgcc 1981 caacctcgac ctctttcagg gcaagcccca ttcggccctg gagagcgctg ccaagcagac 2041 ctggaggttg gccagggaaa ttctcaccaa tcccaaaagc ctggacaaac tatagggtgc 2101 tggggactgc ttgaaaagcg acacaaacgg gcgtgctctc tcagacacac aacacacaac 2161 tcagctataa acagcagaaa ctctggacac aaacttttat gtaagtcacc tgaaatagga 2221 atccggcaga agaccttcgt taattaagaa gcaaacaaaa agagagcaac ccaaccaaaa 2281 caaatcacat tcttgcacaa aagtgatcgt tttcttccaa acaatgtgaa tttaaaaggt 2341 cacacaaaag aagcaatcgg gctccgccac cacaaaatga aacccaaggt acattttcaa 2401 atcaatgtat agtagctccc cccccctttt ccttctttcc ccctatcctt tttctctcca 2461 ccccatcctc ccctctcatt tcgttttgct tttggttgcc tgaatgttgt caccaagtga 2521 aaaaattatt taactatatg taaaatttct cttttaaaaa aagttttact gatgttaaac 2581 gttctcagtg ccaatgtcag actgtgctcc tccctctcct gaacctctac cctcaccctg 2641 agctgtcttg ttgaaaacag taataaaa //