LOCUS       FX175445                 507 bp    mRNA    linear   TSA 23-MAY-2012
DEFINITION  TSA: Pandanus boninensis mRNA, contig: Pb_c13695.
ACCESSION   FX175445
VERSION     FX175445.1
DBLINK      BioProject:PRJDA67377
            Sequence Read Archive:DRR001102
            BioSample:SAMD00011606
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Pandanus boninensis
  ORGANISM  Pandanus boninensis
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Pandanales; Pandanaceae;
            Pandanus.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Yoshimaru,H. and Suzuki,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2011)
            Contact:Hiroshi Yoshimaru
            Forestry and Forest Products Research Institute, Department of
            Forest Genetics; 1 Matsunosato, Tsukuba, Ibaraki 305-8687, Japan
REFERENCE   2
  AUTHORS   Setsuko,S., Uchiyama,K., Sugai,K. and Yoshimaru,H.
  TITLE     Development of EST-SSR markers from cDNA library of Pandanus
            boninensis Warburg (Pandanaceae)
  JOURNAL   Unpublished
COMMENT     Several-year-old seedlings of Pandanus boninensis naturally grown
            in Bonin Island were used for RNA extraction. About 3 g of inner
            bark was cut and frozen in liquid nitrogen, ground using mortar
            and pestle. Total RNA was extracted by the CTAB method (Le Provost
            et al., 2007), and contaminated DNA was removed by SV total RNA
            isolation system (Promega, Madison, WI). The cDNA library
            construction and next generation sequencing by Roche 454 GS FLX
            sequencer with titanium chemistry were carried out by the Hokkaido
            System Science Co., Ltd. (Hokkaido, Japan). To remove polyA and
            adapter sequences from the cDNA sequences, the Program cross_match
            (http://bozeman.mbt.washington.edu/phrap.docs/phrap.html) and TIGR
            SeqClean sequence trimming pipeline
            (http://compbio.dfci.harvard.edu/tgi/software/) was used prior to
            further analyses. We used a EST sequence assembler MIRA (Chevreux
            et al., 2004) to run de novo assemblies.
FEATURES             Location/Qualifiers
     source          1..507
                     /db_xref="taxon:1035881"
                     /dev_stage="several year old seedlings"
                     /mol_type="mRNA"
                     /note="contig: Pb_c13695"
                     /organism="Pandanus boninensis"
                     /tissue_type="mixture of inner bark, current year twigs
                     and terminal buds"
BASE COUNT          129 a          132 c          138 g          106 t
ORIGIN      
        1 aaccacccga ctccagatct tcggtcccaa caagctcgaa gagaagaagg agagcaagat
       61 tctcaagttc ctgggcttca tgtggaaccc actctcatgg gtcatggaga tggctgcaat
      121 acaataggac caatacgacc ctaggccaac ggtgatggac aggctcccga ctggcaggat
      181 ttcgtgggta ttgtcgtgct gcttgtcatc aactctacga tcagcttcat tgaggagaac
      241 aacgccggta atgctgctgc cgcactcatg gcaggcctcg cacccaaamm aaggtgctaa
      301 gagatggcca gtggagcgag caggacgcag cgattttggt tcccggagac atcatcagca
      361 ttaagctggg tgacatcgtc cctgctgatg ctcgtcttct cgatggagat ccattgaaga
      421 tcgatcaatc ggcgctgact ggagaatccc ttccagtgac aaagaatcca ggcgatgagg
      481 tgttctccgg ctcaacatgc aagcagg
//